AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0606020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606020 MtrunA17_Chr8g0382191 94.884 1075 55 0 12 1086 10 1084 0.0 2130
Msa0606020 MtrunA17_Chr2g0279141 45.586 1110 499 27 4 1085 6 1038 0.0 848
Msa0606020 MtrunA17_Chr4g0050401 50.369 677 278 11 436 1085 382 1027 0.0 632
Msa0606020 MtrunA17_Chr4g0050401 38.676 287 142 6 7 279 9 275 9.66e-50 192
Msa0606020 MtrunA17_Chr8g0382181 61.774 327 108 5 53 366 8 330 7.42e-122 382
Msa0606020 MtrunA17_Chr8g0382181 73.469 147 39 0 458 604 330 476 1.83e-64 226
Msa0606020 MtrunA17_Chr8g0377501 43.011 558 278 13 498 1040 402 934 3.82e-120 393
Msa0606020 MtrunA17_Chr8g0377501 39.773 264 126 7 12 258 15 262 4.79e-46 180
Msa0606020 MtrunA17_Chr3g0122351 39.927 551 295 8 503 1042 386 911 1.29e-102 345
Msa0606020 MtrunA17_Chr3g0122351 57.377 122 52 0 12 133 8 129 3.32e-42 167
Msa0606020 MtrunA17_Chr4g0068161 33.129 652 384 16 434 1073 310 921 1.04e-86 300
Msa0606020 MtrunA17_Chr4g0068161 53.147 143 64 1 12 151 26 168 1.25e-34 143
Msa0606020 MtrunA17_Chr2g0294711 33.226 620 369 14 434 1039 298 886 1.67e-84 294
Msa0606020 MtrunA17_Chr2g0294711 47.647 170 80 2 12 181 26 186 7.68e-41 163
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0606020 AT2G22300.2 47.477 1110 457 28 5 1082 7 1022 0.0 902
Msa0606020 AT2G22300.1 47.477 1110 457 28 5 1082 7 1022 0.0 902
Msa0606020 AT5G64220.1 45.604 1092 498 29 3 1067 5 1027 0.0 850
Msa0606020 AT5G64220.2 45.604 1092 498 29 3 1067 5 1027 0.0 850
Msa0606020 AT2G22300.3 47.448 1058 430 28 57 1082 1 964 0.0 842
Msa0606020 AT5G09410.4 49.629 673 291 14 436 1082 231 881 0.0 619
Msa0606020 AT5G09410.2 49.629 673 291 14 436 1082 352 1002 0.0 617
Msa0606020 AT5G09410.2 62.963 162 58 2 12 173 17 176 2.82e-57 215
Msa0606020 AT5G09410.3 49.629 673 291 14 436 1082 411 1061 0.0 617
Msa0606020 AT5G09410.3 53.125 192 58 3 12 173 76 265 4.63e-52 199
Msa0606020 AT5G09410.1 49.629 673 291 14 436 1082 334 984 0.0 616
Msa0606020 AT5G09410.1 62.963 162 58 2 12 173 17 176 2.95e-57 215
Msa0606020 AT1G67310.1 40.214 562 288 11 501 1040 442 977 2.15e-103 349
Msa0606020 AT1G67310.1 47.333 150 69 1 12 161 37 176 4.16e-39 158
Msa0606020 AT3G16940.3 32.315 622 368 14 434 1039 217 801 8.12e-79 276
Msa0606020 AT3G16940.3 55.645 124 55 0 16 139 1 124 3.90e-37 151
Msa0606020 AT3G16940.1 32.315 622 368 14 434 1039 244 828 8.93e-79 276
Msa0606020 AT3G16940.1 51.095 137 67 0 3 139 15 151 2.57e-38 155
Msa0606020 AT3G16940.2 30.857 525 318 13 434 942 244 739 2.76e-54 203
Msa0606020 AT3G16940.2 54.688 128 58 0 12 139 24 151 1.31e-38 155

Find 220 sgRNAs with CRISPR-Local

Find 399 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTTATTGGGTTCTGTTTC+AGG 0.110677 4_2:-52126311 None:intergenic
TCCAACATTGTTAATGTATT+TGG 0.116953 4_2:-52126192 None:intergenic
GATAGGGGACAGTTAGAATA+AGG 0.169692 4_2:-52125764 None:intergenic
ATTCCCCTTCTAGTGCTTAT+TGG 0.214001 4_2:+52127291 Msa0606020:CDS
AGGGAGAAGTGCATATTATT+TGG 0.230772 4_2:-52130531 None:intergenic
TGTTATAGTTAGTGAGAATT+TGG 0.234871 4_2:-52123870 None:intergenic
GAATACGATGGTGACAAATT+TGG 0.239421 4_2:+52129286 Msa0606020:CDS
ATGAACAACCAAACATATTA+TGG 0.239719 4_2:-52130350 None:intergenic
GAAATTTACCTTTGAGAGAT+AGG 0.252450 4_2:-52125781 None:intergenic
ACTATTGATTCCCGTGTTAT+TGG 0.255860 4_2:-52126324 None:intergenic
TGTGAACTCTCAAAAGTTCT+TGG 0.257449 4_2:+52126221 Msa0606020:CDS
TCTACGTAACATGTTCTAAT+AGG 0.258394 4_2:+52127869 Msa0606020:CDS
GCAAGATATCTTAGAAAATA+AGG 0.263006 4_2:+52126256 Msa0606020:CDS
GCCTGAATAGGCACTATCTT+TGG 0.278496 4_2:-52126940 None:intergenic
TTCCCCTTCTAGTGCTTATT+GGG 0.285574 4_2:+52127292 Msa0606020:CDS
AGCAACAATTGTTGGTTCTA+AGG 0.288908 4_2:-52128325 None:intergenic
ATTTGAAGACTCGGAAATTA+AGG 0.297823 4_2:+52127448 Msa0606020:CDS
AAAACTATGGGAAGATAATT+TGG 0.298279 4_2:+52129623 Msa0606020:CDS
CCACCTTCATCTAATACATT+TGG 0.299243 4_2:-52128258 None:intergenic
TTGGTTGTTCATTGTATGTA+TGG 0.312248 4_2:+52130361 Msa0606020:three_prime_UTR
ATACCTTCACTTCCCGATAA+TGG 0.312933 4_2:-52125152 None:intergenic
GTGAACTTCCGCGATGTAAA+TGG 0.316217 4_2:+52128357 Msa0606020:CDS
CGTTGATCTTGAAGCATTGT+TGG 0.336518 4_2:+52130281 Msa0606020:CDS
TTGCTTCCCTCATATCTCTT+GGG 0.341997 4_2:+52128936 Msa0606020:CDS
CAGCCTTTCTTGGCTACGAT+TGG 0.345539 4_2:+52128301 Msa0606020:CDS
CCCAAAGATAGTGCCTATTC+AGG 0.346532 4_2:+52126939 Msa0606020:CDS
GATACAGTTGAAAGCGAAAA+TGG 0.348848 4_2:+52127314 Msa0606020:CDS
CAGCTGAAGCTGAAGGAAAT+TGG 0.351228 4_2:+52126426 Msa0606020:CDS
GACAAGTTAAAATCAGATCT+AGG 0.361350 4_2:+52127113 Msa0606020:CDS
CACCTTCATCTAATACATTT+GGG 0.362638 4_2:-52128257 None:intergenic
GGCATGCATTAAAGTTGCTT+TGG 0.362966 4_2:-52125373 None:intergenic
GGCTATTTCTGAGGGAACTA+TGG 0.368661 4_2:+52129720 Msa0606020:CDS
ATGAAGCAGAAGATTGTAAA+TGG 0.369204 4_2:+52127749 Msa0606020:CDS
GTCGGTTGGGATTGTGGAAA+AGG 0.373416 4_2:+52129645 Msa0606020:CDS
GTTGCTTCCCTCATATCTCT+TGG 0.375690 4_2:+52128935 Msa0606020:CDS
CTATTGATTCCCGTGTTATT+GGG 0.377443 4_2:-52126323 None:intergenic
ATTCAATAGCCATGCAAATT+CGG 0.381684 4_2:+52125682 Msa0606020:CDS
AGCTGATCATAGCAAATAGA+TGG 0.386884 4_2:-52127392 None:intergenic
GGTTAGATTGTAACATAATC+AGG 0.390531 4_2:+52130383 Msa0606020:three_prime_UTR
TGAAATTGTGATAGATGATC+AGG 0.393656 4_2:+52126112 Msa0606020:intron
GCGTCCATCCATAATATGTT+TGG 0.399301 4_2:+52130342 Msa0606020:three_prime_UTR
ATGGATGGACTGCTCTTCAT+TGG 0.403464 4_2:+52128376 Msa0606020:CDS
ACCAAATACATTAACAATGT+TGG 0.404096 4_2:+52126191 Msa0606020:CDS
TGGTATTGGTCTCTTGCATC+TGG 0.406003 4_2:-52129859 None:intergenic
CCATGCCCACAACATCCTTC+TGG 0.406110 4_2:+52128983 Msa0606020:CDS
TTAGAAAAGATGGACATAAC+TGG 0.406867 4_2:+52124083 Msa0606020:CDS
GGAAGATAATTTGGTCGGTT+GGG 0.407139 4_2:+52129632 Msa0606020:CDS
CATTCAACAACCTGTGGTAT+TGG 0.408725 4_2:-52129873 None:intergenic
ACGTGAGAGGTCACCAGGTT+AGG 0.411787 4_2:+52129599 Msa0606020:CDS
ACATCGTTCTAGTCCATTAT+CGG 0.412410 4_2:+52125139 Msa0606020:CDS
GTATCCCAATAAGCACTAGA+AGG 0.413133 4_2:-52127296 None:intergenic
AATTTGGTCGGTTGGGATTG+TGG 0.413549 4_2:+52129639 Msa0606020:CDS
GCCGACCTAGCTTCTGCAAA+TGG 0.416041 4_2:+52129016 Msa0606020:CDS
TTTCCTTGTGAACAGGCCTC+TGG 0.421100 4_2:+52126888 Msa0606020:intron
TTCACACCAGCAACAATTGT+TGG 0.422507 4_2:-52128333 None:intergenic
CTTCAGAAAACAACTGAAGA+TGG 0.424083 4_2:+52128228 Msa0606020:CDS
TTAGAACCAACAATTGTTGC+TGG 0.425908 4_2:+52128327 Msa0606020:CDS
CCTGAATAGGCACTATCTTT+GGG 0.427656 4_2:-52126939 None:intergenic
AACTGAGATACAAGAAAATC+AGG 0.429890 4_2:+52129900 Msa0606020:CDS
CATAGTTCTCCAACTGCACC+TGG 0.431472 4_2:-52127361 None:intergenic
GAATATGAAGAAGCTGAATC+AGG 0.434942 4_2:+52125504 Msa0606020:CDS
CATTGATTATTCCCCAAGTT+GGG 0.435352 4_2:+52127424 Msa0606020:CDS
ATAGGGGACAGTTAGAATAA+GGG 0.437858 4_2:-52125763 None:intergenic
GGGAAGATAATTTGGTCGGT+TGG 0.442560 4_2:+52129631 Msa0606020:CDS
GCCAGTGAATCTTTCATTGA+AGG 0.442930 4_2:-52129181 None:intergenic
CAATTTCCTTCAGCTTCAGC+TGG 0.443285 4_2:-52126425 None:intergenic
CGTGTTGCAGCAACATGAAC+AGG 0.444655 4_2:-52129382 None:intergenic
AAATTTACCTTTGAGAGATA+GGG 0.446563 4_2:-52125780 None:intergenic
AGTTGATCATGTACAAGTTC+TGG 0.447402 4_2:-52128165 None:intergenic
AATGCGAAGTCACACAAGTC+TGG 0.449069 4_2:+52129346 Msa0606020:CDS
TCATTGATTATTCCCCAAGT+TGG 0.450073 4_2:+52127423 Msa0606020:CDS
ACAACAGAGAACACTATTCC+TGG 0.452005 4_2:-52127812 None:intergenic
AGCCTTTCTTGGCTACGATT+GGG 0.452371 4_2:+52128302 Msa0606020:CDS
TGTAAATGGTCATGCATGTT+CGG 0.458202 4_2:+52127763 Msa0606020:CDS
GAGTCTTCAAATGCCCAACT+TGG 0.460974 4_2:-52127437 None:intergenic
AGTAAAATCAGTTCTTTGCT+TGG 0.461341 4_2:+52128084 Msa0606020:CDS
CAGTTCTTTGCTTGGTAGGA+AGG 0.462643 4_2:+52128092 Msa0606020:CDS
TTAGAACATGTTACGTAGAA+AGG 0.466234 4_2:-52127865 None:intergenic
AATGGACACAAAGGAATTGC+TGG 0.466727 4_2:+52129034 Msa0606020:CDS
ATATTACGTTGGCGTCGAAA+AGG 0.469061 4_2:+52129670 Msa0606020:CDS
ACGAGATACTTTAGAAAAGA+TGG 0.469912 4_2:+52124073 Msa0606020:CDS
GAAGTCTCTGCCTCTGTGTT+AGG 0.470588 4_2:-52125447 None:intergenic
ACCTCAACACAAGGCTGGAC+GGG 0.474522 4_2:+52127840 Msa0606020:CDS
TCTCAAGGATATGAGACAAT+GGG 0.476448 4_2:+52126350 Msa0606020:CDS
CCCGAGGGAAGTCATGCTCT+TGG 0.481194 4_2:-52128020 None:intergenic
ATATCTCTTGGGGCAGCACC+AGG 0.481476 4_2:+52128947 Msa0606020:CDS
ATTCCAGAGAAAACAACAAA+AGG 0.481483 4_2:+52129264 Msa0606020:CDS
CCCAAGAGCATGACTTCCCT+CGG 0.481534 4_2:+52128019 Msa0606020:CDS
TGGATGGACTGCTCTTCATT+GGG 0.482883 4_2:+52128377 Msa0606020:CDS
CCGAGGGAAGTCATGCTCTT+GGG 0.487143 4_2:-52128019 None:intergenic
GGGATCGATAAAAGCCTAGT+TGG 0.487311 4_2:+52127134 Msa0606020:CDS
CTCACACGATGAGCCTGAAT+AGG 0.489940 4_2:-52126952 None:intergenic
GGCTCACGTGAGAGGTCACC+AGG 0.496633 4_2:+52129594 Msa0606020:intron
TTGGTAGGAAGGACGGTGAA+TGG 0.497042 4_2:+52128103 Msa0606020:CDS
GTTTCAGGAAAAGACTGAAA+AGG 0.498768 4_2:-52126296 None:intergenic
TGCTTCCCTCATATCTCTTG+GGG 0.499217 4_2:+52128937 Msa0606020:CDS
AAATCAGTTCTTTGCTTGGT+AGG 0.505479 4_2:+52128088 Msa0606020:CDS
TATTCCTTCCCAGGTGCAGT+TGG 0.507207 4_2:+52127352 Msa0606020:CDS
CGTTGGCGTCGAAAAGGTAG+TGG 0.510926 4_2:+52129676 Msa0606020:CDS
TGGTAGGAAGGACGGTGAAT+GGG 0.511619 4_2:+52128104 Msa0606020:CDS
TTCAGAACAAGTTTCGCAGT+TGG 0.512320 4_2:+52129407 Msa0606020:CDS
AGTCTTCAAATGCCCAACTT+GGG 0.512638 4_2:-52127436 None:intergenic
CCAGAAGGATGTTGTGGGCA+TGG 0.516822 4_2:-52128983 None:intergenic
TGGTTGTTCATTGTATGTAT+GGG 0.517220 4_2:+52130362 Msa0606020:three_prime_UTR
ACCTTCAATGAAAGATTCAC+TGG 0.517231 4_2:+52129180 Msa0606020:CDS
TTTGTTGGTGTGTATGAAGA+AGG 0.517240 4_2:-52127040 None:intergenic
AATTTCTTCAATATCTGTTG+TGG 0.517632 4_2:-52123803 None:intergenic
AAGGTTGCCTGTCATTCCTC+AGG 0.518272 4_2:+52126136 Msa0606020:CDS
AGCTCGACAGTTTCAATCGA+TGG 0.519289 4_2:+52127228 Msa0606020:CDS
CATGGATCAGTAAGTGCTCC+TGG 0.519816 4_2:-52128965 None:intergenic
CAGTACAACTATTCCTTCCC+AGG 0.520858 4_2:+52127343 Msa0606020:CDS
GAACAAGTTTCGCAGTTGGA+AGG 0.521020 4_2:+52129411 Msa0606020:CDS
CATCGTTCTAGTCCATTATC+GGG 0.523240 4_2:+52125140 Msa0606020:CDS
CTTCTTGAGTATAATTGACT+CGG 0.525223 4_2:-52127924 None:intergenic
TGTGTCCATTTGCAGAAGCT+AGG 0.527068 4_2:-52129021 None:intergenic
GGCCCAATCGTAGCCAAGAA+AGG 0.527167 4_2:-52128304 None:intergenic
GATATCTTAGAAAATAAGGC+TGG 0.527732 4_2:+52126260 Msa0606020:CDS
TAGTTATAGTGACAATGAGC+AGG 0.528100 4_2:+52126977 Msa0606020:CDS
CGATGGATGAGTAAAGAACT+AGG 0.529382 4_2:+52127245 Msa0606020:CDS
ACAAGTTAAAATCAGATCTA+GGG 0.529700 4_2:+52127114 Msa0606020:CDS
TTCAGAAAACAACTGAAGAT+GGG 0.530144 4_2:+52128229 Msa0606020:CDS
AAGTGCCGGCAGAGATAACC+AGG 0.530702 4_2:+52127794 Msa0606020:CDS
GCAGTTGGAGAACTATGTAC+TGG 0.532695 4_2:+52127367 Msa0606020:CDS
CTATTCCTGGTTATCTCTGC+CGG 0.532774 4_2:-52127799 None:intergenic
GGCCCAAATGTATTAGATGA+AGG 0.533133 4_2:+52128255 Msa0606020:CDS
TTCTACCAGAAGGATGTTGT+GGG 0.536843 4_2:-52128988 None:intergenic
CAAATCAGAGGCTATTTCTG+AGG 0.541683 4_2:+52129711 Msa0606020:CDS
GTGCTGCCCCAAGAGATATG+AGG 0.541703 4_2:-52128943 None:intergenic
AACAAGTTTCGCAGTTGGAA+GGG 0.542396 4_2:+52129412 Msa0606020:CDS
CACCTCAACACAAGGCTGGA+CGG 0.542743 4_2:+52127839 Msa0606020:CDS
TTCTCCAACTGCACCTGGGA+AGG 0.544308 4_2:-52127356 None:intergenic
ACCCGTCCAGCCTTGTGTTG+AGG 0.545426 4_2:-52127841 None:intergenic
TCATCCACCTGAGGAATGAC+AGG 0.545608 4_2:-52126143 None:intergenic
TATTACAAGCACAATATCGA+TGG 0.548796 4_2:+52123827 Msa0606020:CDS
GAGTGTCTTCTATTCCAACT+AGG 0.550195 4_2:-52127148 None:intergenic
AGTGTATCTGTGGCAGAAGA+GGG 0.550559 4_2:+52127197 Msa0606020:CDS
TTTGCAGAAGCTAGGTCGGC+TGG 0.551088 4_2:-52129013 None:intergenic
AGAATTTGGCAAATTTCAGC+CGG 0.551681 4_2:-52123856 None:intergenic
TGAAGCTGAAGGAAATTGGC+AGG 0.551960 4_2:+52126430 Msa0606020:CDS
AAGTGTATCTGTGGCAGAAG+AGG 0.553975 4_2:+52127196 Msa0606020:CDS
TGGAAAAGGTTATATTACGT+TGG 0.554077 4_2:+52129659 Msa0606020:CDS
TATCCCAATAAGCACTAGAA+GGG 0.554536 4_2:-52127295 None:intergenic
AATTTACCTTTGAGAGATAG+GGG 0.555076 4_2:-52125779 None:intergenic
TTTATACCAGCTGAAGCTGA+AGG 0.559293 4_2:+52126419 Msa0606020:CDS
GCAGGAAGCAAACTGAGAAA+AGG 0.561949 4_2:+52129794 Msa0606020:CDS
GTATTAGATGAAGGTGGCCA+AGG 0.562370 4_2:+52128264 Msa0606020:CDS
ACAACCAAACATATTATGGA+TGG 0.563921 4_2:-52130346 None:intergenic
AAATCAGAGGCTATTTCTGA+GGG 0.564813 4_2:+52129712 Msa0606020:CDS
ACAATATCGATGGCTACGTC+CGG 0.566740 4_2:+52123837 Msa0606020:CDS
TTGTATGTTTGTTGATCACA+AGG 0.569291 4_2:-52125417 None:intergenic
AAGTTGGGCATTTGAAGACT+CGG 0.569405 4_2:+52127439 Msa0606020:CDS
CTGCAAAATGAAGCACACCT+TGG 0.570206 4_2:-52128281 None:intergenic
TCTTTGCTTGGTAGGAAGGA+CGG 0.572183 4_2:+52128096 Msa0606020:CDS
TCCATTTGCAGAAGCTAGGT+CGG 0.576737 4_2:-52129017 None:intergenic
GTCTTCAAATGCCCAACTTG+GGG 0.578425 4_2:-52127435 None:intergenic
TATACACCTCAACACAAGGC+TGG 0.578694 4_2:+52127835 Msa0606020:CDS
ATACTGTTTAGTAATGCTGA+TGG 0.578753 4_2:-52126384 None:intergenic
GCTAATTTCTAAGTGGCTGT+AGG 0.578993 4_2:-52130321 None:intergenic
AACTGTCCCCTATCTCTCAA+AGG 0.580934 4_2:+52125773 Msa0606020:CDS
GGCACTATCTTTGGGCCATG+TGG 0.581003 4_2:-52126931 None:intergenic
GGAATCAATAGTACTTCTCA+AGG 0.582466 4_2:+52126335 Msa0606020:CDS
CCAAGAGCATGACTTCCCTC+GGG 0.583296 4_2:+52128020 Msa0606020:CDS
GTTCGGCGAGATAGAAGTGC+CGG 0.585098 4_2:+52127780 Msa0606020:CDS
CTATGGGAAGATAATTTGGT+CGG 0.585590 4_2:+52129627 Msa0606020:CDS
TCATACACACCAACAAAACA+AGG 0.587677 4_2:+52127046 Msa0606020:CDS
TAAAAGATAAACTACATGCA+TGG 0.588544 4_2:+52128202 Msa0606020:CDS
GAAGCAAACTGAGAAAAGGT+TGG 0.588658 4_2:+52129798 Msa0606020:CDS
TTCTCAAGGATATGAGACAA+TGG 0.588805 4_2:+52126349 Msa0606020:CDS
TGCTGCCCCAAGAGATATGA+GGG 0.589348 4_2:-52128942 None:intergenic
GTTCTACCAGAAGGATGTTG+TGG 0.592131 4_2:-52128989 None:intergenic
TTATTATAGGCTCACGTGAG+AGG 0.593673 4_2:+52129586 Msa0606020:intron
AGTAGAAATCCGAATTTGCA+TGG 0.594305 4_2:-52125691 None:intergenic
CCATTGACTTCACTCTAGCA+AGG 0.595945 4_2:-52129828 None:intergenic
TTGCACTGCTACTACGCCCA+TGG 0.597003 4_2:+52124401 Msa0606020:CDS
CGAAAAGGTAGTGGTTTGCG+TGG 0.599858 4_2:+52129685 Msa0606020:CDS
CATTGACTTCACTCTAGCAA+GGG 0.600713 4_2:-52129827 None:intergenic
CCTTGCTAGAGTGAAGTCAA+TGG 0.603870 4_2:+52129828 Msa0606020:CDS
TTGTTATACACCTCAACACA+AGG 0.604166 4_2:+52127831 Msa0606020:CDS
ATTCTTTAAGCGCATCCACA+TGG 0.606620 4_2:+52126916 Msa0606020:CDS
ATTGATGCTTCTGATCTCAC+CGG 0.607494 4_2:-52127956 None:intergenic
AGAAACATGAGAGAAACCGT+TGG 0.609159 4_2:+52129109 Msa0606020:CDS
GACTCTATTAAGTGTATCTG+TGG 0.611735 4_2:+52127187 Msa0606020:CDS
ACTCAAGAAGTCAACACTGC+CGG 0.614091 4_2:+52127937 Msa0606020:CDS
AGTCCATTATCGGGAAGTGA+AGG 0.615277 4_2:+52125149 Msa0606020:CDS
TCGGCTGGTGTTCTACCAGA+AGG 0.617785 4_2:-52128998 None:intergenic
TTGTGATAGATGATCAGGAA+AGG 0.618020 4_2:+52126117 Msa0606020:intron
GTTGCCTGTCATTCCTCAGG+TGG 0.619752 4_2:+52126139 Msa0606020:CDS
CTATTCAGGCTCATCGTGTG+AGG 0.626917 4_2:+52126953 Msa0606020:CDS
ATGAAGAAGGAACTGTTCCA+AGG 0.628051 4_2:-52127027 None:intergenic
TCTGAGGGAACTATGGTACA+AGG 0.629731 4_2:+52129727 Msa0606020:CDS
ACTTCCGCGATGTAAATGGA+TGG 0.631116 4_2:+52128361 Msa0606020:CDS
GATGGACGCTAATTTCTAAG+TGG 0.633815 4_2:-52130328 None:intergenic
TGACCACTGTTAATGCTAGA+CGG 0.638659 4_2:-52125474 None:intergenic
ATCCCAATAAGCACTAGAAG+GGG 0.640484 4_2:-52127294 None:intergenic
GCTTCTGCAAATGGACACAA+AGG 0.643597 4_2:+52129025 Msa0606020:CDS
GGAAGCTCATGAGAGACTCA+AGG 0.645990 4_2:+52124135 Msa0606020:CDS
TGAAACAGAACCCAATAACA+CGG 0.650306 4_2:+52126313 Msa0606020:CDS
AAAACAACTGAAGATGGGAA+AGG 0.651527 4_2:+52128234 Msa0606020:CDS
TAATCGAATCTAAATCCCGA+GGG 0.653442 4_2:-52128035 None:intergenic
CCAAATGTATTAGATGAAGG+TGG 0.656043 4_2:+52128258 Msa0606020:CDS
ATGCAAGAGACCAATACCAC+AGG 0.658465 4_2:+52129863 Msa0606020:CDS
CTAATCGAATCTAAATCCCG+AGG 0.658480 4_2:-52128036 None:intergenic
GAAACAGAACCCAATAACAC+GGG 0.662228 4_2:+52126314 Msa0606020:CDS
ACGAACTTACTGGATGCTTG+AGG 0.663844 4_2:+52124448 Msa0606020:CDS
TTACCGTCTAGCATTAACAG+TGG 0.677007 4_2:+52125471 Msa0606020:CDS
GAAAAGATGGACATAACTGG+AGG 0.677852 4_2:+52124086 Msa0606020:CDS
ATGGACTGCTCTTCATTGGG+CGG 0.678377 4_2:+52128380 Msa0606020:CDS
AAACAACAAAAGGAATACGA+TGG 0.685779 4_2:+52129274 Msa0606020:CDS
TTTGCGTGGATTCAAATCAG+AGG 0.685933 4_2:+52129699 Msa0606020:CDS
TTACAACATTCAACAACCTG+TGG 0.686006 4_2:-52129879 None:intergenic
AAAATCGTAGTCATCCTCAG+TGG 0.687131 4_2:-52129761 None:intergenic
ATAGTTCTCCAACTGCACCT+GGG 0.689507 4_2:-52127360 None:intergenic
CTCAAGGATATGAGACAATG+GGG 0.695507 4_2:+52126351 Msa0606020:CDS
ATACTTGGAGGCATATACGA+AGG 0.704350 4_2:-52123913 None:intergenic
GCTTAAAGAATTAAAACCAG+AGG 0.714724 4_2:-52126904 None:intergenic
CAAAGTTATGCCTAACACAG+AGG 0.717841 4_2:+52125437 Msa0606020:CDS
CAGTCCATCCATTTACATCG+CGG 0.722444 4_2:-52128365 None:intergenic
AGTAAGATATCATCCACCTG+AGG 0.729515 4_2:-52126152 None:intergenic
AGGTGTATCATCTTCCACTG+AGG 0.765631 4_2:+52129747 Msa0606020:CDS
ACAATGCTTCAAGATCAACG+AGG 0.891821 4_2:-52130278 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAATTTATAATCCT+TGG + chr4_2:52124545-52124564 Msa0606020:intron 10.0%
!!! AAATTATTTAGTTTTAAATC+AGG + chr4_2:52126588-52126607 Msa0606020:intron 10.0%
!!! AACATATCTTTCTAATTTTA+CGG + chr4_2:52124322-52124341 Msa0606020:intron 15.0%
!!! AGAAATTGCTAATTTTTTTT+TGG + chr4_2:52125035-52125054 Msa0606020:intron 15.0%
!! GAAGAATAAAAAAATAAAGA+AGG - chr4_2:52125608-52125627 None:intergenic 15.0%
!! ATATTAAAATAGATACAAGA+AGG - chr4_2:52125637-52125656 None:intergenic 15.0%
!!! TTTCAATTTTACAATTAGTA+TGG - chr4_2:52126097-52126116 None:intergenic 15.0%
!!! TTTTATGAATTGTGATGTTT+TGG + chr4_2:52124003-52124022 Msa0606020:intron 20.0%
!!! AGTTACAACTTTAACTTAAT+TGG + chr4_2:52124211-52124230 Msa0606020:intron 20.0%
!! TCATATGTTATTCAATGTAA+TGG - chr4_2:52124354-52124373 None:intergenic 20.0%
!! TGATTAATAAAATTCCGTTA+AGG + chr4_2:52124594-52124613 Msa0606020:intron 20.0%
!!! GTATAAGTTGTTATTACAAT+TGG - chr4_2:52124713-52124732 None:intergenic 20.0%
!!! AATTGCTAATTTTTTTTTGG+TGG + chr4_2:52125038-52125057 Msa0606020:intron 20.0%
!! ACATTCTTAGTAACAATTTA+AGG + chr4_2:52125254-52125273 Msa0606020:intron 20.0%
!!! GAATACCTATATTACTTTTA+AGG - chr4_2:52125328-52125347 None:intergenic 20.0%
!!! ATTAGATTCTTCATTTTCTT+TGG - chr4_2:52125397-52125416 None:intergenic 20.0%
!!! CAACAATTTATTTTGATGTA+CGG + chr4_2:52125822-52125841 Msa0606020:intron 20.0%
!!! TTTTATATATTCCGAAATGT+TGG + chr4_2:52126039-52126058 Msa0606020:intron 20.0%
!!! AAAAATTTAAAGACTAGTCA+AGG + chr4_2:52126771-52126790 Msa0606020:intron 20.0%
!!! CTTTTAAAAGTATTTCATGA+GGG - chr4_2:52127088-52127107 None:intergenic 20.0%
!! ATTAAAAAAAATGGTATCCA+TGG + chr4_2:52127605-52127624 Msa0606020:intron 20.0%
!!! ACTACTAATATCAATTTTAC+AGG + chr4_2:52127693-52127712 Msa0606020:intron 20.0%
!!! GATACTTTTAATAAACGATT+TGG + chr4_2:52127985-52128004 Msa0606020:CDS 20.0%
!!! TGATTTTTCAATTTTCATTG+AGG + chr4_2:52128877-52128896 Msa0606020:intron 20.0%
!! ATAATAAGTTAGAGGATTAA+AGG - chr4_2:52129573-52129592 None:intergenic 20.0%
!! TTAATCCTCTAACTTATTAT+AGG + chr4_2:52129573-52129592 Msa0606020:intron 20.0%
!! AAAACATATAGTGTGAAATT+TGG - chr4_2:52129968-52129987 None:intergenic 20.0%
!!! TTACTAGTTTATCAGAAATA+CGG + chr4_2:52130033-52130052 Msa0606020:intron 20.0%
!! AATTAAATGATATTAACTGC+TGG - chr4_2:52130150-52130169 None:intergenic 20.0%
!! TGTAGTTAAAAAGAAATTGT+AGG + chr4_2:52130457-52130476 Msa0606020:three_prime_UTR 20.0%
!! GTAGTTAAAAAGAAATTGTA+GGG + chr4_2:52130458-52130477 Msa0606020:three_prime_UTR 20.0%
! AATTTCTTCAATATCTGTTG+TGG - chr4_2:52123806-52123825 None:intergenic 25.0%
! TGTTATAGTTAGTGAGAATT+TGG - chr4_2:52123873-52123892 None:intergenic 25.0%
! GAATCAGAATTAATCATACT+TGG - chr4_2:52123931-52123950 None:intergenic 25.0%
! AAAAAGATGGAAAAACTGTT+AGG + chr4_2:52124113-52124132 Msa0606020:CDS 25.0%
! AAAAGATGGAAAAACTGTTA+GGG + chr4_2:52124114-52124133 Msa0606020:CDS 25.0%
!! ATACCTAAGGTTTTTATCTT+AGG - chr4_2:52124185-52124204 None:intergenic 25.0%
! AATGTCATTAAAATCAATCC+TGG + chr4_2:52124276-52124295 Msa0606020:intron 25.0%
! ATTAAAATCAATCCTGGAAT+AGG + chr4_2:52124282-52124301 Msa0606020:intron 25.0%
!! GAATAACATATGATGTTTTC+AGG + chr4_2:52124361-52124380 Msa0606020:intron 25.0%
! TTTAGTGTGAGATTTGAAAA+TGG - chr4_2:52124492-52124511 None:intergenic 25.0%
! TAGAATTACATGCTTTAACT+AGG - chr4_2:52125006-52125025 None:intergenic 25.0%
!!! TCTTTATCCTTGTTATTTGA+TGG + chr4_2:52125205-52125224 Msa0606020:intron 25.0%
!!! ACATATAATTTTTCAGTGCT+TGG + chr4_2:52125292-52125311 Msa0606020:intron 25.0%
!! AAATTTACCTTTGAGAGATA+GGG - chr4_2:52125783-52125802 None:intergenic 25.0%
! TACATGATTGATCGATAAAA+GGG - chr4_2:52125877-52125896 None:intergenic 25.0%
! ATACATGATTGATCGATAAA+AGG - chr4_2:52125878-52125897 None:intergenic 25.0%
!!! TCTAGAATAGAATTTTACTG+CGG - chr4_2:52125989-52126008 None:intergenic 25.0%
! ACCAAATACATTAACAATGT+TGG + chr4_2:52126191-52126210 Msa0606020:CDS 25.0%
! TCCAACATTGTTAATGTATT+TGG - chr4_2:52126195-52126214 None:intergenic 25.0%
! GCAAGATATCTTAGAAAATA+AGG + chr4_2:52126256-52126275 Msa0606020:CDS 25.0%
! GTTCTATATAAGCTTCAATA+TGG + chr4_2:52126622-52126641 Msa0606020:intron 25.0%
!!! GCTTTTAAAAGTATTTCATG+AGG - chr4_2:52127089-52127108 None:intergenic 25.0%
! ACAAGTTAAAATCAGATCTA+GGG + chr4_2:52127114-52127133 Msa0606020:CDS 25.0%
! TAAAAGATAAACTACATGCA+TGG + chr4_2:52128202-52128221 Msa0606020:CDS 25.0%
! TGACAATACATGAAACTAAT+AGG + chr4_2:52128486-52128505 Msa0606020:intron 25.0%
! AATATGCTTCATTTCATCAT+AGG + chr4_2:52128615-52128634 Msa0606020:intron 25.0%
! ATATGCTTCATTTCATCATA+GGG + chr4_2:52128616-52128635 Msa0606020:intron 25.0%
! TGCTCATTTAAATAATCGAA+GGG + chr4_2:52128779-52128798 Msa0606020:intron 25.0%
!! TGCATTTTACTTTCATTATC+AGG + chr4_2:52128903-52128922 Msa0606020:intron 25.0%
!! GCATTTTACTTTCATTATCA+GGG + chr4_2:52128904-52128923 Msa0606020:intron 25.0%
! TTTGTACATAATTCATGCAA+AGG - chr4_2:52129502-52129521 None:intergenic 25.0%
! AAAACTATGGGAAGATAATT+TGG + chr4_2:52129623-52129642 Msa0606020:CDS 25.0%
!! TACTAGTTTATCAGAAATAC+GGG + chr4_2:52130034-52130053 Msa0606020:intron 25.0%
! ATGAACAACCAAACATATTA+TGG - chr4_2:52130353-52130372 None:intergenic 25.0%
TATTACAAGCACAATATCGA+TGG + chr4_2:52123827-52123846 Msa0606020:CDS 30.0%
TCAGAATTAATCATACTTGG+AGG - chr4_2:52123928-52123947 None:intergenic 30.0%
!! TGAATTGTGATGTTTTGGAT+TGG + chr4_2:52124008-52124027 Msa0606020:intron 30.0%
!! ACTTTTCTTGTTTGATCGAA+AGG + chr4_2:52124048-52124067 Msa0606020:CDS 30.0%
! ACGAGATACTTTAGAAAAGA+TGG + chr4_2:52124073-52124092 Msa0606020:CDS 30.0%
TTAGAAAAGATGGACATAAC+TGG + chr4_2:52124083-52124102 Msa0606020:CDS 30.0%
CAACCTAAGATAAAAACCTT+AGG + chr4_2:52124179-52124198 Msa0606020:intron 30.0%
TGTAACTGTAACAATACCTA+AGG - chr4_2:52124198-52124217 None:intergenic 30.0%
TTCAGTTTATTTCCTATTCC+AGG - chr4_2:52124297-52124316 None:intergenic 30.0%
!!! ATTGTCATTTTGTTCTCCAT+GGG - chr4_2:52124420-52124439 None:intergenic 30.0%
!!! AATTGTCATTTTGTTCTCCA+TGG - chr4_2:52124421-52124440 None:intergenic 30.0%
! ATTTTCAAAGACGAACTTAC+TGG + chr4_2:52124438-52124457 Msa0606020:CDS 30.0%
ATCCTTGGTTTATAACTAAG+TGG + chr4_2:52124560-52124579 Msa0606020:intron 30.0%
AACCACTTAGTTATAAACCA+AGG - chr4_2:52124565-52124584 None:intergenic 30.0%
TTGGTTTATAACTAAGTGGT+TGG + chr4_2:52124564-52124583 Msa0606020:intron 30.0%
AAAGAACGATTTGACCTTAA+CGG - chr4_2:52124611-52124630 None:intergenic 30.0%
AACTTTGCATAACTATGTCA+AGG - chr4_2:52124646-52124665 None:intergenic 30.0%
! AGTTGTTATTACAATTGGAG+AGG - chr4_2:52124708-52124727 None:intergenic 30.0%
TTTGTATTCGACATTGTTAC+AGG + chr4_2:52125106-52125125 Msa0606020:intron 30.0%
TTGTATTCGACATTGTTACA+GGG + chr4_2:52125107-52125126 Msa0606020:intron 30.0%
TGAGATTCCATCAAATAACA+AGG - chr4_2:52125215-52125234 None:intergenic 30.0%
CTGGTCCTTAAAAGTAATAT+AGG + chr4_2:52125320-52125339 Msa0606020:intron 30.0%
! TTGTATGTTTGTTGATCACA+AGG - chr4_2:52125420-52125439 None:intergenic 30.0%
ATTCAATAGCCATGCAAATT+CGG + chr4_2:52125682-52125701 Msa0606020:CDS 30.0%
! AATTTACCTTTGAGAGATAG+GGG - chr4_2:52125782-52125801 None:intergenic 30.0%
! GAAATTTACCTTTGAGAGAT+AGG - chr4_2:52125784-52125803 None:intergenic 30.0%
!! TTAAAAGAGTGTGACTTTTG+AGG + chr4_2:52125908-52125927 Msa0606020:intron 30.0%
TACAATTAGTATGGCATGTA+AGG - chr4_2:52126088-52126107 None:intergenic 30.0%
TGAAATTGTGATAGATGATC+AGG + chr4_2:52126112-52126131 Msa0606020:intron 30.0%
GATATCTTAGAAAATAAGGC+TGG + chr4_2:52126260-52126279 Msa0606020:CDS 30.0%
ATACTGTTTAGTAATGCTGA+TGG - chr4_2:52126387-52126406 None:intergenic 30.0%
! GAAATGTGTCATTCTGATAT+TGG + chr4_2:52126482-52126501 Msa0606020:intron 30.0%
! TCTTAATTTTCCTTGTGAAC+AGG + chr4_2:52126881-52126900 Msa0606020:intron 30.0%
GCTTAAAGAATTAAAACCAG+AGG - chr4_2:52126907-52126926 None:intergenic 30.0%
!! AGTTGATTTTCAACAATCCT+TGG + chr4_2:52127010-52127029 Msa0606020:CDS 30.0%
GACAAGTTAAAATCAGATCT+AGG + chr4_2:52127113-52127132 Msa0606020:CDS 30.0%
ATTTGAAGACTCGGAAATTA+AGG + chr4_2:52127448-52127467 Msa0606020:CDS 30.0%
CAAGTGCAGAATATCAAAAT+AGG - chr4_2:52127477-52127496 None:intergenic 30.0%
! TTTTCTCTCTTTTTCTTCCA+TGG - chr4_2:52127625-52127644 None:intergenic 30.0%
AAAGTGCACTATATTGATGA+CGG + chr4_2:52127650-52127669 Msa0606020:intron 30.0%
! ATTTTACAGGTTCTCATTTC+AGG + chr4_2:52127706-52127725 Msa0606020:intron 30.0%
ATGAAGCAGAAGATTGTAAA+TGG + chr4_2:52127749-52127768 Msa0606020:CDS 30.0%
TTAGAACATGTTACGTAGAA+AGG - chr4_2:52127868-52127887 None:intergenic 30.0%
TCTACGTAACATGTTCTAAT+AGG + chr4_2:52127869-52127888 Msa0606020:CDS 30.0%
CTTCTTGAGTATAATTGACT+CGG - chr4_2:52127927-52127946 None:intergenic 30.0%
AGTAAAATCAGTTCTTTGCT+TGG + chr4_2:52128084-52128103 Msa0606020:CDS 30.0%
TTCAGAAAACAACTGAAGAT+GGG + chr4_2:52128229-52128248 Msa0606020:CDS 30.0%
CACCTTCATCTAATACATTT+GGG - chr4_2:52128260-52128279 None:intergenic 30.0%
GTACTGTATAAATGTGAAAC+AGG + chr4_2:52128549-52128568 Msa0606020:intron 30.0%
!!! TAAGCATTTTAACTTCTGCT+AGG - chr4_2:52128575-52128594 None:intergenic 30.0%
CATAGGGTTGAAAAATGAAA+AGG + chr4_2:52128632-52128651 Msa0606020:intron 30.0%
! TTTTTCCATAACAAAAACGC+AGG - chr4_2:52128667-52128686 None:intergenic 30.0%
GTGCTCATTTAAATAATCGA+AGG + chr4_2:52128778-52128797 Msa0606020:intron 30.0%
GCTCATTTAAATAATCGAAG+GGG + chr4_2:52128780-52128799 Msa0606020:intron 30.0%
ATTCCAGAGAAAACAACAAA+AGG + chr4_2:52129264-52129283 Msa0606020:CDS 30.0%
!!! ATTCCTTTTGTTGTTTTCTC+TGG - chr4_2:52129270-52129289 None:intergenic 30.0%
AAACAACAAAAGGAATACGA+TGG + chr4_2:52129274-52129293 Msa0606020:CDS 30.0%
ACAGCGAATTGTAAAAATTC+AGG + chr4_2:52129459-52129478 Msa0606020:CDS 30.0%
TACATAATTCATGCAAAGGT+TGG - chr4_2:52129498-52129517 None:intergenic 30.0%
TGGAAAAGGTTATATTACGT+TGG + chr4_2:52129659-52129678 Msa0606020:CDS 30.0%
!!! GACTACGATTTTTTGAAAGA+AGG + chr4_2:52129772-52129791 Msa0606020:CDS 30.0%
AACTGAGATACAAGAAAATC+AGG + chr4_2:52129900-52129919 Msa0606020:CDS 30.0%
TTGCACAGTTGTGAAAAAAA+TGG - chr4_2:52129994-52130013 None:intergenic 30.0%
ATCAAGAATGCAAAACTTAG+AGG + chr4_2:52130058-52130077 Msa0606020:intron 30.0%
AACCATAATGCAAAATCATC+AGG + chr4_2:52130112-52130131 Msa0606020:intron 30.0%
!! AAAAGGCATTTACAAAAGAC+TGG - chr4_2:52130201-52130220 None:intergenic 30.0%
! CTTTTGTAAATGCCTTTTGT+AGG + chr4_2:52130203-52130222 Msa0606020:intron 30.0%
ACAACCAAACATATTATGGA+TGG - chr4_2:52130349-52130368 None:intergenic 30.0%
TTGGTTGTTCATTGTATGTA+TGG + chr4_2:52130361-52130380 Msa0606020:three_prime_UTR 30.0%
TGGTTGTTCATTGTATGTAT+GGG + chr4_2:52130362-52130381 Msa0606020:three_prime_UTR 30.0%
GGTTAGATTGTAACATAATC+AGG + chr4_2:52130383-52130402 Msa0606020:three_prime_UTR 30.0%
! TGATTCAAGATTTTGCTACA+AGG - chr4_2:52130427-52130446 None:intergenic 30.0%
! AGTTTTTGCATTTTTGTGTG+AGG - chr4_2:52130497-52130516 None:intergenic 30.0%
AGAATTTGGCAAATTTCAGC+CGG - chr4_2:52123859-52123878 None:intergenic 35.0%
!!! GTTTTGGATTGGTTGACAAT+AGG + chr4_2:52124019-52124038 Msa0606020:intron 35.0%
AACTGGAGGAAGAAAAAAGA+TGG + chr4_2:52124100-52124119 Msa0606020:CDS 35.0%
!! AACATATGATGTTTTCAGGC+TGG + chr4_2:52124365-52124384 Msa0606020:intron 35.0%
! CAGACAAGGCTTTAACATAA+AGG - chr4_2:52124743-52124762 None:intergenic 35.0%
ATTAAGCGCTTATTCAGACA+AGG - chr4_2:52124757-52124776 None:intergenic 35.0%
CAATACCAATATGTGTGAGA+TGG - chr4_2:52124850-52124869 None:intergenic 35.0%
! TTTTCTTCATTTGCTCTGCA+TGG - chr4_2:52124874-52124893 None:intergenic 35.0%
GTATTGCTGATCACATGTAT+TGG - chr4_2:52124964-52124983 None:intergenic 35.0%
!! AAAGAAGTACTTCCAGAGAT+AGG - chr4_2:52125066-52125085 None:intergenic 35.0%
!!! TCTCTGGAAGTACTTCTTTT+AGG + chr4_2:52125067-52125086 Msa0606020:intron 35.0%
ACATCGTTCTAGTCCATTAT+CGG + chr4_2:52125139-52125158 Msa0606020:CDS 35.0%
! TTTTCAGTGCTTGGTAAATC+TGG + chr4_2:52125301-52125320 Msa0606020:intron 35.0%
!!! TGATCAAGTTTTTTCCTCCA+GGG + chr4_2:52125348-52125367 Msa0606020:intron 35.0%
GAATATGAAGAAGCTGAATC+AGG + chr4_2:52125504-52125523 Msa0606020:CDS 35.0%
GGCTATTCAAAAAGTTCTCT+AGG - chr4_2:52125587-52125606 None:intergenic 35.0%
AGTAGAAATCCGAATTTGCA+TGG - chr4_2:52125694-52125713 None:intergenic 35.0%
! GCTTTAATCTTTTGAACAGC+AGG - chr4_2:52125737-52125756 None:intergenic 35.0%
ATAGGGGACAGTTAGAATAA+GGG - chr4_2:52125766-52125785 None:intergenic 35.0%
TTGTGATAGATGATCAGGAA+AGG + chr4_2:52126117-52126136 Msa0606020:intron 35.0%
TGTGAACTCTCAAAAGTTCT+TGG + chr4_2:52126221-52126240 Msa0606020:CDS 35.0%
!! AAGTTCTTGGCTTTTCATCA+TGG + chr4_2:52126234-52126253 Msa0606020:CDS 35.0%
GTTTCAGGAAAAGACTGAAA+AGG - chr4_2:52126299-52126318 None:intergenic 35.0%
TGAAACAGAACCCAATAACA+CGG + chr4_2:52126313-52126332 Msa0606020:CDS 35.0%
!! CTATTGATTCCCGTGTTATT+GGG - chr4_2:52126326-52126345 None:intergenic 35.0%
!! ACTATTGATTCCCGTGTTAT+TGG - chr4_2:52126327-52126346 None:intergenic 35.0%
GGAATCAATAGTACTTCTCA+AGG + chr4_2:52126335-52126354 Msa0606020:CDS 35.0%
TTCTCAAGGATATGAGACAA+TGG + chr4_2:52126349-52126368 Msa0606020:CDS 35.0%
TCTCAAGGATATGAGACAAT+GGG + chr4_2:52126350-52126369 Msa0606020:CDS 35.0%
AACCATGTCTGCAAGTAAAA+TGG + chr4_2:52126528-52126547 Msa0606020:intron 35.0%
! ATCCATTTTACTTGCAGACA+TGG - chr4_2:52126533-52126552 None:intergenic 35.0%
GAGCAGTTAAATGAGTTTGA+TGG - chr4_2:52126852-52126871 None:intergenic 35.0%
TAGTTATAGTGACAATGAGC+AGG + chr4_2:52126977-52126996 Msa0606020:CDS 35.0%
TTTGTTGGTGTGTATGAAGA+AGG - chr4_2:52127043-52127062 None:intergenic 35.0%
TCATACACACCAACAAAACA+AGG + chr4_2:52127046-52127065 Msa0606020:CDS 35.0%
!!! GCATAAGAACCTTGTTTTGT+TGG - chr4_2:52127058-52127077 None:intergenic 35.0%
GACTCTATTAAGTGTATCTG+TGG + chr4_2:52127187-52127206 Msa0606020:CDS 35.0%
TATCCCAATAAGCACTAGAA+GGG - chr4_2:52127298-52127317 None:intergenic 35.0%
GATACAGTTGAAAGCGAAAA+TGG + chr4_2:52127314-52127333 Msa0606020:CDS 35.0%
AGCTGATCATAGCAAATAGA+TGG - chr4_2:52127395-52127414 None:intergenic 35.0%
! TCATTGATTATTCCCCAAGT+TGG + chr4_2:52127423-52127442 Msa0606020:CDS 35.0%
! CATTGATTATTCCCCAAGTT+GGG + chr4_2:52127424-52127443 Msa0606020:CDS 35.0%
AGTGAACATATGGTCAAAAC+TGG - chr4_2:52127500-52127519 None:intergenic 35.0%
ACAACAGTTCAGTGAACATA+TGG - chr4_2:52127510-52127529 None:intergenic 35.0%
TTGTTATACACCTCAACACA+AGG + chr4_2:52127831-52127850 Msa0606020:CDS 35.0%
TAATCGAATCTAAATCCCGA+GGG - chr4_2:52128038-52128057 None:intergenic 35.0%
AAATCAGTTCTTTGCTTGGT+AGG + chr4_2:52128088-52128107 Msa0606020:CDS 35.0%
AGTTGATCATGTACAAGTTC+TGG - chr4_2:52128168-52128187 None:intergenic 35.0%
!! CATCTTCAGTTGTTTTCTGA+AGG - chr4_2:52128230-52128249 None:intergenic 35.0%
CTTCAGAAAACAACTGAAGA+TGG + chr4_2:52128228-52128247 Msa0606020:CDS 35.0%
AAAACAACTGAAGATGGGAA+AGG + chr4_2:52128234-52128253 Msa0606020:CDS 35.0%
CCACCTTCATCTAATACATT+TGG - chr4_2:52128261-52128280 None:intergenic 35.0%
CCAAATGTATTAGATGAAGG+TGG + chr4_2:52128258-52128277 Msa0606020:CDS 35.0%
!! AGCAACAATTGTTGGTTCTA+AGG - chr4_2:52128328-52128347 None:intergenic 35.0%
TTAGAACCAACAATTGTTGC+TGG + chr4_2:52128327-52128346 Msa0606020:CDS 35.0%
ATTGTCAAAGTGTATCGTGT+TGG - chr4_2:52128473-52128492 None:intergenic 35.0%
GGGTTGAAAAATGAAAAGGT+TGG + chr4_2:52128636-52128655 Msa0606020:intron 35.0%
! AAGTACCTGCGTTTTTGTTA+TGG + chr4_2:52128659-52128678 Msa0606020:intron 35.0%
! GTCGTGTCTTTTAAATACAC+AGG - chr4_2:52128732-52128751 None:intergenic 35.0%
ACGACATCCCTAACAAATAA+AGG + chr4_2:52128747-52128766 Msa0606020:intron 35.0%
ACATCCCTAACAAATAAAGG+TGG + chr4_2:52128750-52128769 Msa0606020:intron 35.0%
! CTCACCACCTTTATTTGTTA+GGG - chr4_2:52128757-52128776 None:intergenic 35.0%
! TCTCACCACCTTTATTTGTT+AGG - chr4_2:52128758-52128777 None:intergenic 35.0%
TTACTTTCATTATCAGGGAG+AGG + chr4_2:52128909-52128928 Msa0606020:intron 35.0%
!!! GACTCTTTGTTTTGTTCCAA+CGG - chr4_2:52129128-52129147 None:intergenic 35.0%
!! AGCACTCATTGTTTTGTTCT+CGG - chr4_2:52129150-52129169 None:intergenic 35.0%
ACCTTCAATGAAAGATTCAC+TGG + chr4_2:52129180-52129199 Msa0606020:CDS 35.0%
GAATACGATGGTGACAAATT+TGG + chr4_2:52129286-52129305 Msa0606020:CDS 35.0%
GTGAGCCTATAATAAGTTAG+AGG - chr4_2:52129581-52129600 None:intergenic 35.0%
ACCAGGTTAGGAAAAACTAT+GGG + chr4_2:52129611-52129630 Msa0606020:CDS 35.0%
CTATGGGAAGATAATTTGGT+CGG + chr4_2:52129627-52129646 Msa0606020:CDS 35.0%
!! AAATCAGAGGCTATTTCTGA+GGG + chr4_2:52129712-52129731 Msa0606020:CDS 35.0%
!!! ACGATTTTTTGAAAGAAGGC+AGG + chr4_2:52129776-52129795 Msa0606020:CDS 35.0%
TTACAACATTCAACAACCTG+TGG - chr4_2:52129882-52129901 None:intergenic 35.0%
! GTCCTGATGATTTTGCATTA+TGG - chr4_2:52130117-52130136 None:intergenic 35.0%
GATCTTGCTTTACCTACAAA+AGG - chr4_2:52130218-52130237 None:intergenic 35.0%
! ATACTTGGAGGCATATACGA+AGG - chr4_2:52123916-52123935 None:intergenic 40.0%
!! TTGGATTGGTTGACAATAGG+TGG + chr4_2:52124022-52124041 Msa0606020:intron 40.0%
GAAAAGATGGACATAACTGG+AGG + chr4_2:52124086-52124105 Msa0606020:CDS 40.0%
! AAGGCAGAAACTTTGAAGGA+GGG - chr4_2:52124813-52124832 None:intergenic 40.0%
TGTCTCCATCTCACACATAT+TGG + chr4_2:52124842-52124861 Msa0606020:intron 40.0%
GATGCATTTGTTCTTGCTTG+AGG + chr4_2:52124923-52124942 Msa0606020:intron 40.0%
!! TTTTTGGTGGTTCCTATCTC+TGG + chr4_2:52125051-52125070 Msa0606020:intron 40.0%
CATCGTTCTAGTCCATTATC+GGG + chr4_2:52125140-52125159 Msa0606020:CDS 40.0%
ATACCTTCACTTCCCGATAA+TGG - chr4_2:52125155-52125174 None:intergenic 40.0%
!!! CTGATCAAGTTTTTTCCTCC+AGG + chr4_2:52125347-52125366 Msa0606020:intron 40.0%
! TTAAAGTTGCTTTGGTTCCC+TGG - chr4_2:52125368-52125387 None:intergenic 40.0%
GGCATGCATTAAAGTTGCTT+TGG - chr4_2:52125376-52125395 None:intergenic 40.0%
CAAAGTTATGCCTAACACAG+AGG + chr4_2:52125437-52125456 Msa0606020:CDS 40.0%
TTACCGTCTAGCATTAACAG+TGG + chr4_2:52125471-52125490 Msa0606020:CDS 40.0%
TGACCACTGTTAATGCTAGA+CGG - chr4_2:52125477-52125496 None:intergenic 40.0%
GATAGGGGACAGTTAGAATA+AGG - chr4_2:52125767-52125786 None:intergenic 40.0%
CAAACTTAGTGACGTAGCAA+TGG + chr4_2:52125935-52125954 Msa0606020:intron 40.0%
!! TATTCCGAAATGTTGGCCTT+TGG + chr4_2:52126046-52126065 Msa0606020:intron 40.0%
TGATCCAAAGGCCAACATTT+CGG - chr4_2:52126053-52126072 None:intergenic 40.0%
TAAGATCTTGCCTGATCCAA+AGG - chr4_2:52126065-52126084 None:intergenic 40.0%
AGTAAGATATCATCCACCTG+AGG - chr4_2:52126155-52126174 None:intergenic 40.0%
! GTGTTATTGGGTTCTGTTTC+AGG - chr4_2:52126314-52126333 None:intergenic 40.0%
GAAACAGAACCCAATAACAC+GGG + chr4_2:52126314-52126333 Msa0606020:CDS 40.0%
CTCAAGGATATGAGACAATG+GGG + chr4_2:52126351-52126370 Msa0606020:CDS 40.0%
TTTATACCAGCTGAAGCTGA+AGG + chr4_2:52126419-52126438 Msa0606020:CDS 40.0%
TGAAGGAAATTGGCAGGTAT+GGG + chr4_2:52126436-52126455 Msa0606020:intron 40.0%
GACTCACTACAAAGTGATGT+TGG + chr4_2:52126681-52126700 Msa0606020:intron 40.0%
ATTCTTTAAGCGCATCCACA+TGG + chr4_2:52126916-52126935 Msa0606020:CDS 40.0%
CCTGAATAGGCACTATCTTT+GGG - chr4_2:52126942-52126961 None:intergenic 40.0%
ATGAAGAAGGAACTGTTCCA+AGG - chr4_2:52127030-52127049 None:intergenic 40.0%
GAGTGTCTTCTATTCCAACT+AGG - chr4_2:52127151-52127170 None:intergenic 40.0%
CGATGGATGAGTAAAGAACT+AGG + chr4_2:52127245-52127264 Msa0606020:CDS 40.0%
ATTCCCCTTCTAGTGCTTAT+TGG + chr4_2:52127291-52127310 Msa0606020:CDS 40.0%
TTCCCCTTCTAGTGCTTATT+GGG + chr4_2:52127292-52127311 Msa0606020:CDS 40.0%
ATCCCAATAAGCACTAGAAG+GGG - chr4_2:52127297-52127316 None:intergenic 40.0%
GTATCCCAATAAGCACTAGA+AGG - chr4_2:52127299-52127318 None:intergenic 40.0%
AGTCTTCAAATGCCCAACTT+GGG - chr4_2:52127439-52127458 None:intergenic 40.0%
AAGTTGGGCATTTGAAGACT+CGG + chr4_2:52127439-52127458 Msa0606020:CDS 40.0%
ACAACAGAGAACACTATTCC+TGG - chr4_2:52127815-52127834 None:intergenic 40.0%
ATTGATGCTTCTGATCTCAC+CGG - chr4_2:52127959-52127978 None:intergenic 40.0%
CTAATCGAATCTAAATCCCG+AGG - chr4_2:52128039-52128058 None:intergenic 40.0%
GGCCCAAATGTATTAGATGA+AGG + chr4_2:52128255-52128274 Msa0606020:CDS 40.0%
! CTTCATTTTGCAGCCTTTCT+TGG + chr4_2:52128291-52128310 Msa0606020:CDS 40.0%
TTCACACCAGCAACAATTGT+TGG - chr4_2:52128336-52128355 None:intergenic 40.0%
! TAAATAATCGAAGGGGTGTG+TGG + chr4_2:52128787-52128806 Msa0606020:intron 40.0%
! AAATAATCGAAGGGGTGTGT+GGG + chr4_2:52128788-52128807 Msa0606020:intron 40.0%
TGGGCTATTTAAGCATACCT+CGG + chr4_2:52128807-52128826 Msa0606020:intron 40.0%
ATTTAAGCATACCTCGGGAA+AGG + chr4_2:52128813-52128832 Msa0606020:intron 40.0%
! TGGACTCTTTTCATGGGAAA+TGG - chr4_2:52128845-52128864 None:intergenic 40.0%
! TCACGTTGGACTCTTTTCAT+GGG - chr4_2:52128851-52128870 None:intergenic 40.0%
AAAAATCACGAGTCTCACGT+TGG - chr4_2:52128865-52128884 None:intergenic 40.0%
TTGCTTCCCTCATATCTCTT+GGG + chr4_2:52128936-52128955 Msa0606020:CDS 40.0%
TTCTACCAGAAGGATGTTGT+GGG - chr4_2:52128991-52129010 None:intergenic 40.0%
AATGGACACAAAGGAATTGC+TGG + chr4_2:52129034-52129053 Msa0606020:CDS 40.0%
AGAAACATGAGAGAAACCGT+TGG + chr4_2:52129109-52129128 Msa0606020:CDS 40.0%
GCCAGTGAATCTTTCATTGA+AGG - chr4_2:52129184-52129203 None:intergenic 40.0%
TTCAGAACAAGTTTCGCAGT+TGG + chr4_2:52129407-52129426 Msa0606020:CDS 40.0%
AACAAGTTTCGCAGTTGGAA+GGG + chr4_2:52129412-52129431 Msa0606020:CDS 40.0%
TTATTATAGGCTCACGTGAG+AGG + chr4_2:52129586-52129605 Msa0606020:intron 40.0%
CACCAGGTTAGGAAAAACTA+TGG + chr4_2:52129610-52129629 Msa0606020:CDS 40.0%
! TCCCATAGTTTTTCCTAACC+TGG - chr4_2:52129615-52129634 None:intergenic 40.0%
GGAAGATAATTTGGTCGGTT+GGG + chr4_2:52129632-52129651 Msa0606020:CDS 40.0%
! ATATTACGTTGGCGTCGAAA+AGG + chr4_2:52129670-52129689 Msa0606020:CDS 40.0%
TTTGCGTGGATTCAAATCAG+AGG + chr4_2:52129699-52129718 Msa0606020:CDS 40.0%
!! CAAATCAGAGGCTATTTCTG+AGG + chr4_2:52129711-52129730 Msa0606020:CDS 40.0%
AAAATCGTAGTCATCCTCAG+TGG - chr4_2:52129764-52129783 None:intergenic 40.0%
GAAGCAAACTGAGAAAAGGT+TGG + chr4_2:52129798-52129817 Msa0606020:CDS 40.0%
!! CATTGACTTCACTCTAGCAA+GGG - chr4_2:52129830-52129849 None:intergenic 40.0%
CATTCAACAACCTGTGGTAT+TGG - chr4_2:52129876-52129895 None:intergenic 40.0%
TATGGTTCAGCAGATGATTC+AGG - chr4_2:52130099-52130118 None:intergenic 40.0%
ACAATGCTTCAAGATCAACG+AGG - chr4_2:52130281-52130300 None:intergenic 40.0%
!! CGTTGATCTTGAAGCATTGT+TGG + chr4_2:52130281-52130300 Msa0606020:CDS 40.0%
GCTAATTTCTAAGTGGCTGT+AGG - chr4_2:52130324-52130343 None:intergenic 40.0%
GATGGACGCTAATTTCTAAG+TGG - chr4_2:52130331-52130350 None:intergenic 40.0%
GCGTCCATCCATAATATGTT+TGG + chr4_2:52130342-52130361 Msa0606020:three_prime_UTR 40.0%
ACAATATCGATGGCTACGTC+CGG + chr4_2:52123837-52123856 Msa0606020:CDS 45.0%
!! ATGTTTTCAGGCTGGAAGTG+TGG + chr4_2:52124373-52124392 Msa0606020:intron 45.0%
ACGAACTTACTGGATGCTTG+AGG + chr4_2:52124448-52124467 Msa0606020:CDS 45.0%
! CAAGGCAGAAACTTTGAAGG+AGG - chr4_2:52124814-52124833 None:intergenic 45.0%
AGGCAAGGCAGAAACTTTGA+AGG - chr4_2:52124817-52124836 None:intergenic 45.0%
TGTGAGATGGAGACAAAGTG+AGG - chr4_2:52124837-52124856 None:intergenic 45.0%
AGTCCATTATCGGGAAGTGA+AGG + chr4_2:52125149-52125168 Msa0606020:CDS 45.0%
AACTGTCCCCTATCTCTCAA+AGG + chr4_2:52125773-52125792 Msa0606020:CDS 45.0%
CTTAGTGACGTAGCAATGGA+TGG + chr4_2:52125939-52125958 Msa0606020:intron 45.0%
!! GAAATGTTGGCCTTTGGATC+AGG + chr4_2:52126052-52126071 Msa0606020:intron 45.0%
CAATTTCCTTCAGCTTCAGC+TGG - chr4_2:52126428-52126447 None:intergenic 45.0%
CAGCTGAAGCTGAAGGAAAT+TGG + chr4_2:52126426-52126445 Msa0606020:CDS 45.0%
TGAAGCTGAAGGAAATTGGC+AGG + chr4_2:52126430-52126449 Msa0606020:CDS 45.0%
CTGAAGGAAATTGGCAGGTA+TGG + chr4_2:52126435-52126454 Msa0606020:intron 45.0%
CCCAAAGATAGTGCCTATTC+AGG + chr4_2:52126939-52126958 Msa0606020:CDS 45.0%
GCCTGAATAGGCACTATCTT+TGG - chr4_2:52126943-52126962 None:intergenic 45.0%
GGGATCGATAAAAGCCTAGT+TGG + chr4_2:52127134-52127153 Msa0606020:CDS 45.0%
AAGTGTATCTGTGGCAGAAG+AGG + chr4_2:52127196-52127215 Msa0606020:CDS 45.0%
AGTGTATCTGTGGCAGAAGA+GGG + chr4_2:52127197-52127216 Msa0606020:CDS 45.0%
AGCTCGACAGTTTCAATCGA+TGG + chr4_2:52127228-52127247 Msa0606020:CDS 45.0%
CAGTACAACTATTCCTTCCC+AGG + chr4_2:52127343-52127362 Msa0606020:CDS 45.0%
ATAGTTCTCCAACTGCACCT+GGG - chr4_2:52127363-52127382 None:intergenic 45.0%
GCAGTTGGAGAACTATGTAC+TGG + chr4_2:52127367-52127386 Msa0606020:CDS 45.0%
GTCTTCAAATGCCCAACTTG+GGG - chr4_2:52127438-52127457 None:intergenic 45.0%
GAGTCTTCAAATGCCCAACT+TGG - chr4_2:52127440-52127459 None:intergenic 45.0%
CTATTCCTGGTTATCTCTGC+CGG - chr4_2:52127802-52127821 None:intergenic 45.0%
TATACACCTCAACACAAGGC+TGG + chr4_2:52127835-52127854 Msa0606020:CDS 45.0%
ACTCAAGAAGTCAACACTGC+CGG + chr4_2:52127937-52127956 Msa0606020:CDS 45.0%
CAGTTCTTTGCTTGGTAGGA+AGG + chr4_2:52128092-52128111 Msa0606020:CDS 45.0%
TCTTTGCTTGGTAGGAAGGA+CGG + chr4_2:52128096-52128115 Msa0606020:CDS 45.0%
GTATTAGATGAAGGTGGCCA+AGG + chr4_2:52128264-52128283 Msa0606020:CDS 45.0%
CTGCAAAATGAAGCACACCT+TGG - chr4_2:52128284-52128303 None:intergenic 45.0%
AGCCTTTCTTGGCTACGATT+GGG + chr4_2:52128302-52128321 Msa0606020:CDS 45.0%
GTGAACTTCCGCGATGTAAA+TGG + chr4_2:52128357-52128376 Msa0606020:CDS 45.0%
ACTTCCGCGATGTAAATGGA+TGG + chr4_2:52128361-52128380 Msa0606020:CDS 45.0%
CAGTCCATCCATTTACATCG+CGG - chr4_2:52128368-52128387 None:intergenic 45.0%
!! ATGGATGGACTGCTCTTCAT+TGG + chr4_2:52128376-52128395 Msa0606020:CDS 45.0%
!! TGGATGGACTGCTCTTCATT+GGG + chr4_2:52128377-52128396 Msa0606020:CDS 45.0%
GGGCTATTTAAGCATACCTC+GGG + chr4_2:52128808-52128827 Msa0606020:intron 45.0%
! CTCACGTTGGACTCTTTTCA+TGG - chr4_2:52128852-52128871 None:intergenic 45.0%
GTTGCTTCCCTCATATCTCT+TGG + chr4_2:52128935-52128954 Msa0606020:CDS 45.0%
TGCTTCCCTCATATCTCTTG+GGG + chr4_2:52128937-52128956 Msa0606020:CDS 45.0%
GTTCTACCAGAAGGATGTTG+TGG - chr4_2:52128992-52129011 None:intergenic 45.0%
TCCATTTGCAGAAGCTAGGT+CGG - chr4_2:52129020-52129039 None:intergenic 45.0%
TGTGTCCATTTGCAGAAGCT+AGG - chr4_2:52129024-52129043 None:intergenic 45.0%
GCTTCTGCAAATGGACACAA+AGG + chr4_2:52129025-52129044 Msa0606020:CDS 45.0%
AATGCGAAGTCACACAAGTC+TGG + chr4_2:52129346-52129365 Msa0606020:CDS 45.0%
GAACAAGTTTCGCAGTTGGA+AGG + chr4_2:52129411-52129430 Msa0606020:CDS 45.0%
GGGAAGATAATTTGGTCGGT+TGG + chr4_2:52129631-52129650 Msa0606020:CDS 45.0%
AATTTGGTCGGTTGGGATTG+TGG + chr4_2:52129639-52129658 Msa0606020:CDS 45.0%
!! GGCTATTTCTGAGGGAACTA+TGG + chr4_2:52129720-52129739 Msa0606020:CDS 45.0%
TCTGAGGGAACTATGGTACA+AGG + chr4_2:52129727-52129746 Msa0606020:CDS 45.0%
AGGTGTATCATCTTCCACTG+AGG + chr4_2:52129747-52129766 Msa0606020:CDS 45.0%
GCAGGAAGCAAACTGAGAAA+AGG + chr4_2:52129794-52129813 Msa0606020:CDS 45.0%
!! CCATTGACTTCACTCTAGCA+AGG - chr4_2:52129831-52129850 None:intergenic 45.0%
CCTTGCTAGAGTGAAGTCAA+TGG + chr4_2:52129828-52129847 Msa0606020:CDS 45.0%
!! TGGTATTGGTCTCTTGCATC+TGG - chr4_2:52129862-52129881 None:intergenic 45.0%
ATGCAAGAGACCAATACCAC+AGG + chr4_2:52129863-52129882 Msa0606020:CDS 45.0%
GTTCAGCAGATGATTCAGGT+GGG - chr4_2:52130095-52130114 None:intergenic 45.0%
! AAAGACTGGCTAAGCTTTGC+TGG - chr4_2:52130187-52130206 None:intergenic 45.0%
!! AAAAAAGTTATTAAAAAAAA+TGG + chr4_2:52127596-52127615 Msa0606020:intron 5.0%
GGAAGCTCATGAGAGACTCA+AGG + chr4_2:52124135-52124154 Msa0606020:CDS 50.0%
GATGGAGACAAAGTGAGGCA+AGG - chr4_2:52124832-52124851 None:intergenic 50.0%
! AAGTTGCTTTGGTTCCCTGG+AGG - chr4_2:52125365-52125384 None:intergenic 50.0%
GAAGTCTCTGCCTCTGTGTT+AGG - chr4_2:52125450-52125469 None:intergenic 50.0%
AAGGTTGCCTGTCATTCCTC+AGG + chr4_2:52126136-52126155 Msa0606020:CDS 50.0%
TCATCCACCTGAGGAATGAC+AGG - chr4_2:52126146-52126165 None:intergenic 50.0%
TTTCCTTGTGAACAGGCCTC+TGG + chr4_2:52126888-52126907 Msa0606020:intron 50.0%
AAACCAGAGGCCTGTTCACA+AGG - chr4_2:52126894-52126913 None:intergenic 50.0%
CTCACACGATGAGCCTGAAT+AGG - chr4_2:52126955-52126974 None:intergenic 50.0%
CTATTCAGGCTCATCGTGTG+AGG + chr4_2:52126953-52126972 Msa0606020:CDS 50.0%
TATTCCTTCCCAGGTGCAGT+TGG + chr4_2:52127352-52127371 Msa0606020:CDS 50.0%
CATAGTTCTCCAACTGCACC+TGG - chr4_2:52127364-52127383 None:intergenic 50.0%
TTGGTAGGAAGGACGGTGAA+TGG + chr4_2:52128103-52128122 Msa0606020:CDS 50.0%
TGGTAGGAAGGACGGTGAAT+GGG + chr4_2:52128104-52128123 Msa0606020:CDS 50.0%
CAGCCTTTCTTGGCTACGAT+TGG + chr4_2:52128301-52128320 Msa0606020:CDS 50.0%
! ATGGACTGCTCTTCATTGGG+CGG + chr4_2:52128380-52128399 Msa0606020:CDS 50.0%
TGCTGCCCCAAGAGATATGA+GGG - chr4_2:52128945-52128964 None:intergenic 50.0%
CATGGATCAGTAAGTGCTCC+TGG - chr4_2:52128968-52128987 None:intergenic 50.0%
CGTGTTGCAGCAACATGAAC+AGG - chr4_2:52129385-52129404 None:intergenic 50.0%
GTCGGTTGGGATTGTGGAAA+AGG + chr4_2:52129645-52129664 Msa0606020:CDS 50.0%
! CGAAAAGGTAGTGGTTTGCG+TGG + chr4_2:52129685-52129704 Msa0606020:CDS 50.0%
GGTTCAGCAGATGATTCAGG+TGG - chr4_2:52130096-52130115 None:intergenic 50.0%
TTGCACTGCTACTACGCCCA+TGG + chr4_2:52124401-52124420 Msa0606020:CDS 55.0%
GTTGCCTGTCATTCCTCAGG+TGG + chr4_2:52126139-52126158 Msa0606020:CDS 55.0%
GGCACTATCTTTGGGCCATG+TGG - chr4_2:52126934-52126953 None:intergenic 55.0%
TTCTCCAACTGCACCTGGGA+AGG - chr4_2:52127359-52127378 None:intergenic 55.0%
! GTTCGGCGAGATAGAAGTGC+CGG + chr4_2:52127780-52127799 Msa0606020:CDS 55.0%
!! AAGTGCCGGCAGAGATAACC+AGG + chr4_2:52127794-52127813 Msa0606020:CDS 55.0%
CACCTCAACACAAGGCTGGA+CGG + chr4_2:52127839-52127858 Msa0606020:CDS 55.0%
ACCTCAACACAAGGCTGGAC+GGG + chr4_2:52127840-52127859 Msa0606020:CDS 55.0%
CCGAGGGAAGTCATGCTCTT+GGG - chr4_2:52128022-52128041 None:intergenic 55.0%
! CCCAAGAGCATGACTTCCCT+CGG + chr4_2:52128019-52128038 Msa0606020:CDS 55.0%
! CCAAGAGCATGACTTCCCTC+GGG + chr4_2:52128020-52128039 Msa0606020:CDS 55.0%
GGCCCAATCGTAGCCAAGAA+AGG - chr4_2:52128307-52128326 None:intergenic 55.0%
! CTTCATTGGGCGGCGTTTTG+TGG + chr4_2:52128390-52128409 Msa0606020:CDS 55.0%
GTGCTGCCCCAAGAGATATG+AGG - chr4_2:52128946-52128965 None:intergenic 55.0%
ATATCTCTTGGGGCAGCACC+AGG + chr4_2:52128947-52128966 Msa0606020:CDS 55.0%
CCAGAAGGATGTTGTGGGCA+TGG - chr4_2:52128986-52129005 None:intergenic 55.0%
CCATGCCCACAACATCCTTC+TGG + chr4_2:52128983-52129002 Msa0606020:CDS 55.0%
TCGGCTGGTGTTCTACCAGA+AGG - chr4_2:52129001-52129020 None:intergenic 55.0%
TTTGCAGAAGCTAGGTCGGC+TGG - chr4_2:52129016-52129035 None:intergenic 55.0%
GCCGACCTAGCTTCTGCAAA+TGG + chr4_2:52129016-52129035 Msa0606020:CDS 55.0%
ACGTGAGAGGTCACCAGGTT+AGG + chr4_2:52129599-52129618 Msa0606020:CDS 55.0%
! CGTTGGCGTCGAAAAGGTAG+TGG + chr4_2:52129676-52129695 Msa0606020:CDS 55.0%
! ACCCGTCCAGCCTTGTGTTG+AGG - chr4_2:52127844-52127863 None:intergenic 60.0%
CCCGAGGGAAGTCATGCTCT+TGG - chr4_2:52128023-52128042 None:intergenic 60.0%
! ATTGGGCGGCGTTTTGTGGC+AGG + chr4_2:52128394-52128413 Msa0606020:CDS 60.0%
AATGGCTCTCGCCTTTCCCG+AGG - chr4_2:52128827-52128846 None:intergenic 60.0%
GGCTCACGTGAGAGGTCACC+AGG + chr4_2:52129594-52129613 Msa0606020:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 52123778 52130548 52123778 ID=Msa0606020;Name=Msa0606020
chr4_2 mRNA 52123778 52130548 52123778 ID=Msa0606020-mRNA-1;Parent=Msa0606020;Name=Msa0606020-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|1|0.91|1|1|1|12|213|1086
chr4_2 exon 52123778 52123931 52123778 ID=Msa0606020-mRNA-1:exon:12626;Parent=Msa0606020-mRNA-1
chr4_2 exon 52124041 52124156 52124041 ID=Msa0606020-mRNA-1:exon:12627;Parent=Msa0606020-mRNA-1
chr4_2 exon 52124383 52124471 52124383 ID=Msa0606020-mRNA-1:exon:12628;Parent=Msa0606020-mRNA-1
chr4_2 exon 52125128 52125170 52125128 ID=Msa0606020-mRNA-1:exon:12629;Parent=Msa0606020-mRNA-1
chr4_2 exon 52125369 52125525 52125369 ID=Msa0606020-mRNA-1:exon:12630;Parent=Msa0606020-mRNA-1
chr4_2 exon 52125681 52125794 52125681 ID=Msa0606020-mRNA-1:exon:12631;Parent=Msa0606020-mRNA-1
chr4_2 exon 52126126 52126451 52126126 ID=Msa0606020-mRNA-1:exon:12632;Parent=Msa0606020-mRNA-1
chr4_2 exon 52126903 52127469 52126903 ID=Msa0606020-mRNA-1:exon:12633;Parent=Msa0606020-mRNA-1
chr4_2 exon 52127715 52128415 52127715 ID=Msa0606020-mRNA-1:exon:12634;Parent=Msa0606020-mRNA-1
chr4_2 exon 52128925 52129480 52128925 ID=Msa0606020-mRNA-1:exon:12635;Parent=Msa0606020-mRNA-1
chr4_2 exon 52129595 52129921 52129595 ID=Msa0606020-mRNA-1:exon:12636;Parent=Msa0606020-mRNA-1
chr4_2 exon 52130225 52130548 52130225 ID=Msa0606020-mRNA-1:exon:12637;Parent=Msa0606020-mRNA-1
chr4_2 CDS 52123778 52123931 52123778 ID=Msa0606020-mRNA-1:cds;Parent=Msa0606020-mRNA-1
chr4_2 CDS 52124041 52124156 52124041 ID=Msa0606020-mRNA-1:cds;Parent=Msa0606020-mRNA-1
chr4_2 CDS 52124383 52124471 52124383 ID=Msa0606020-mRNA-1:cds;Parent=Msa0606020-mRNA-1
chr4_2 CDS 52125128 52125170 52125128 ID=Msa0606020-mRNA-1:cds;Parent=Msa0606020-mRNA-1
chr4_2 CDS 52125369 52125525 52125369 ID=Msa0606020-mRNA-1:cds;Parent=Msa0606020-mRNA-1
chr4_2 CDS 52125681 52125794 52125681 ID=Msa0606020-mRNA-1:cds;Parent=Msa0606020-mRNA-1
chr4_2 CDS 52126126 52126451 52126126 ID=Msa0606020-mRNA-1:cds;Parent=Msa0606020-mRNA-1
chr4_2 CDS 52126903 52127469 52126903 ID=Msa0606020-mRNA-1:cds;Parent=Msa0606020-mRNA-1
chr4_2 CDS 52127715 52128415 52127715 ID=Msa0606020-mRNA-1:cds;Parent=Msa0606020-mRNA-1
chr4_2 CDS 52128925 52129480 52128925 ID=Msa0606020-mRNA-1:cds;Parent=Msa0606020-mRNA-1
chr4_2 CDS 52129595 52129921 52129595 ID=Msa0606020-mRNA-1:cds;Parent=Msa0606020-mRNA-1
chr4_2 CDS 52130225 52130335 52130225 ID=Msa0606020-mRNA-1:cds;Parent=Msa0606020-mRNA-1
chr4_2 three_prime_UTR 52130336 52130548 52130336 ID=Msa0606020-mRNA-1:three_prime_utr;Parent=Msa0606020-mRNA-1
Gene Sequence

>Msa0606020

ATGTCTAATTCATATACTATGATTGCCACAACAGATATTGAAGAAATTTTATTACAAGCACAATATCGATGGCTACGTCCGGCTGAAATTTGCCAAATTCTCACTAACTATAACAGCTTTCAGATTTCTTCGCAACCTTCGTATATGCCTCCAAGTGGTTCACTTTTCTTGTTTGATCGAAAGGTGACGAGATACTTTAGAAAAGATGGACATAACTGGAGGAAGAAAAAAGATGGAAAAACTGTTAGGGAAGCTCATGAGAGACTCAAGGCTGGAAGTGTGGAAGTATTGCACTGCTACTACGCCCATGGAGAACAAAATGACAATTTTCAAAGACGAACTTACTGGATGCTTGAGGAGGAACTCTCACACATCGTTCTAGTCCATTATCGGGAAGTGAAGGGAACCAAAGCAACTTTAATGCATGCCAAAGAAAATGAAGAATCTAATCCTTGTGATCAACAAACATACAAAGTTATGCCTAACACAGAGGCAGAGACTTCTTTACCGTCTAGCATTAACAGTGGTCAAGCATCAGAATATGAAGAAGCTGAATCAGCATTCAATAGCCATGCAAATTCGGATTTCTACTCTTTTCTTGAGCTGCAACAGCCTGCTGTTCAAAAGATTAAAGCTCAACTCCCTTATTCTAACTGTCCCCTATCTCTCAAAGATGATCAGGAAAGGTTGCCTGTCATTCCTCAGGTGGATGATATCTTACTCAGTCAAGCTAATGAAACCAAATACATTAACAATGTTGGATTGACATGTGAACTCTCAAAAGTTCTTGGCTTTTCATCATGGCAAGATATCTTAGAAAATAAGGCTGGAAGTCATAATGTGCCTTTTCAGTCTTTTCCTGAAACAGAACCCAATAACACGGGAATCAATAGTACTTCTCAAGGATATGAGACAATGGGGCAACATTTAACCATCAGCATTACTAAACAGTATGATAATAGAAGTTTTATACCAGCTGAAGCTGAAGGAAATTGGCAGGCCTCTGGTTTTAATTCTTTAAGCGCATCCACATGGCCCAAAGATAGTGCCTATTCAGGCTCATCGTGTGAGGTTAGTTATAGTGACAATGAGCAGGAAGTTAATGAAGTTGATTTTCAACAATCCTTGGAACAGTTCCTTCTTCATACACACCAACAAAACAAGGTTCTTATGCAAAATAGCCCTCATGAAATACTTTTAAAAGCAGAAGACAAGTTAAAATCAGATCTAGGGATCGATAAAAGCCTAGTTGGAATAGAAGACACTCATTTCACTTCAAAGAAGACTCTATTAAGTGTATCTGTGGCAGAAGAGGGCTTGAAGAAGCTCGACAGTTTCAATCGATGGATGAGTAAAGAACTAGGCGATGTCGAAGAATCAAGCAAGCATTCCCCTTCTAGTGCTTATTGGGATACAGTTGAAAGCGAAAATGGTGTTGACAGTACAACTATTCCTTCCCAGGTGCAGTTGGAGAACTATGTACTGGATCCATCTATTTGCTATGATCAGCTTTTTAGCATCATTGATTATTCCCCAAGTTGGGCATTTGAAGACTCGGAAATTAAGGTTCTCATTTCAGGACGATTCTTAAAGAGTCAACATGAAGCAGAAGATTGTAAATGGTCATGCATGTTCGGCGAGATAGAAGTGCCGGCAGAGATAACCAGGAATAGTGTTCTCTGTTGTTATACACCTCAACACAAGGCTGGACGGGTTCCTTTCTACGTAACATGTTCTAATAGGTTAGCATGTAGTGAAGTGCGCGAATTCGATTTCCGAGTCAATTATACTCAAGAAGTCAACACTGCCGGTGAGATCAGAAGCATCAATACTTATGATACTTTTAATAAACGATTTGGAGAATTGTTGTCCCAAGAGCATGACTTCCCTCGGGATTTAGATTCGATTAGTGTGAATGAGAAATCTCAACTGAGAAGTAAAATCAGTTCTTTGCTTGGTAGGAAGGACGGTGAATGGGACGAACTACTTAAATTTACTCTAGACAAAGATTTTTCTCCAGAACTTGTACATGATCAACTGCTTCAAAATCTTCTAAAAGATAAACTACATGCATGGCTCCTTCAGAAAACAACTGAAGATGGGAAAGGCCCAAATGTATTAGATGAAGGTGGCCAAGGTGTGCTTCATTTTGCAGCCTTTCTTGGCTACGATTGGGCCTTAGAACCAACAATTGTTGCTGGTGTGAATGTGAACTTCCGCGATGTAAATGGATGGACTGCTCTTCATTGGGCGGCGTTTTGTGGCAGGGAGAGGACAGTTGCTTCCCTCATATCTCTTGGGGCAGCACCAGGAGCACTTACTGATCCATGCCCACAACATCCTTCTGGTAGAACACCAGCCGACCTAGCTTCTGCAAATGGACACAAAGGAATTGCTGGTTATCTTGCAGAATCTTTCTTAAGCTCACAACTCAAGTCTCTTGATTTGAAAAGAAACATGAGAGAAACCGTTGGAACAAAACAAAGAGTCCGAGAACAAAACAATGAGTGCTTCTCACATGAACCTTCAATGAAAGATTCACTGGCTGCAGTGTGCAATGCAACTCAAGCTGCTGCTCGTATTCATCAAGTTTTTAGAGTGCAATCATTCCAGAGAAAACAACAAAAGGAATACGATGGTGACAAATTTGGAATATCTGATGAACGTGCTCTTTCACTAATATCAGTGAATGCGAAGTCACACAAGTCTGGACTACGCAATGAGCCTGTTCATGTTGCTGCAACACGTATTCAGAACAAGTTTCGCAGTTGGAAGGGCAGAAAAGATTTTTTGATTATTCGACAGCGAATTGTAAAAATTCAGGCTCACGTGAGAGGTCACCAGGTTAGGAAAAACTATGGGAAGATAATTTGGTCGGTTGGGATTGTGGAAAAGGTTATATTACGTTGGCGTCGAAAAGGTAGTGGTTTGCGTGGATTCAAATCAGAGGCTATTTCTGAGGGAACTATGGTACAAGGTGTATCATCTTCCACTGAGGATGACTACGATTTTTTGAAAGAAGGCAGGAAGCAAACTGAGAAAAGGTTGGAGAAAGCCCTTGCTAGAGTGAAGTCAATGGCTCAATATCCAGATGCAAGAGACCAATACCACAGGTTGTTGAATGTTGTAACTGAGATACAAGAAAATCAGGTAAAGCAAGATCGAAATTTTATCAATTCAGAAGAAACAAGACAATTCAATAACCTCGTTGATCTTGAAGCATTGTTGGACGAAGATACTTTCATGCCTACAGCCACTTAG
Protein sequence

>Msa0606020

MSNSYTMIATTDIEEILLQAQYRWLRPAEICQILTNYNSFQISSQPSYMPPSGSLFLFDRKVTRYFRKDGHNWRKKKDGKTVREAHERLKAGSVEVLHCYYAHGEQNDNFQRRTYWMLEEELSHIVLVHYREVKGTKATLMHAKENEESNPCDQQTYKVMPNTEAETSLPSSINSGQASEYEEAESAFNSHANSDFYSFLELQQPAVQKIKAQLPYSNCPLSLKDDQERLPVIPQVDDILLSQANETKYINNVGLTCELSKVLGFSSWQDILENKAGSHNVPFQSFPETEPNNTGINSTSQGYETMGQHLTISITKQYDNRSFIPAEAEGNWQASGFNSLSASTWPKDSAYSGSSCEVSYSDNEQEVNEVDFQQSLEQFLLHTHQQNKVLMQNSPHEILLKAEDKLKSDLGIDKSLVGIEDTHFTSKKTLLSVSVAEEGLKKLDSFNRWMSKELGDVEESSKHSPSSAYWDTVESENGVDSTTIPSQVQLENYVLDPSICYDQLFSIIDYSPSWAFEDSEIKVLISGRFLKSQHEAEDCKWSCMFGEIEVPAEITRNSVLCCYTPQHKAGRVPFYVTCSNRLACSEVREFDFRVNYTQEVNTAGEIRSINTYDTFNKRFGELLSQEHDFPRDLDSISVNEKSQLRSKISSLLGRKDGEWDELLKFTLDKDFSPELVHDQLLQNLLKDKLHAWLLQKTTEDGKGPNVLDEGGQGVLHFAAFLGYDWALEPTIVAGVNVNFRDVNGWTALHWAAFCGRERTVASLISLGAAPGALTDPCPQHPSGRTPADLASANGHKGIAGYLAESFLSSQLKSLDLKRNMRETVGTKQRVREQNNECFSHEPSMKDSLAAVCNATQAAARIHQVFRVQSFQRKQQKEYDGDKFGISDERALSLISVNAKSHKSGLRNEPVHVAATRIQNKFRSWKGRKDFLIIRQRIVKIQAHVRGHQVRKNYGKIIWSVGIVEKVILRWRRKGSGLRGFKSEAISEGTMVQGVSSSTEDDYDFLKEGRKQTEKRLEKALARVKSMAQYPDARDQYHRLLNVVTEIQENQVKQDRNFINSEETRQFNNLVDLEALLDEDTFMPTAT*