AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1407740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1407740 MtrunA17_Chr8g0382191 91.899 1111 54 1 12 1122 10 1084 0.0 2115
Msa1407740 MtrunA17_Chr2g0279141 44.241 1146 498 28 4 1121 6 1038 0.0 832
Msa1407740 MtrunA17_Chr4g0050401 50.517 677 277 11 472 1121 382 1027 0.0 633
Msa1407740 MtrunA17_Chr4g0050401 34.365 323 142 7 7 315 9 275 6.82e-44 173
Msa1407740 MtrunA17_Chr8g0382181 61.747 332 110 5 84 402 3 330 5.34e-125 391
Msa1407740 MtrunA17_Chr8g0382181 74.150 147 38 0 494 640 330 476 2.83e-65 229
Msa1407740 MtrunA17_Chr8g0377501 43.190 558 277 13 534 1076 402 934 1.23e-120 395
Msa1407740 MtrunA17_Chr8g0377501 39.130 230 85 5 12 235 15 195 2.29e-40 162
Msa1407740 MtrunA17_Chr3g0122351 40.036 552 293 9 539 1078 386 911 1.41e-103 348
Msa1407740 MtrunA17_Chr3g0122351 44.937 158 51 1 12 169 8 129 2.69e-37 152
Msa1407740 MtrunA17_Chr4g0068161 33.231 653 382 18 470 1109 310 921 3.12e-86 299
Msa1407740 MtrunA17_Chr4g0068161 42.458 179 64 2 12 187 26 168 5.62e-29 125
Msa1407740 MtrunA17_Chr2g0294711 33.226 620 369 14 470 1075 298 886 5.12e-84 293
Msa1407740 MtrunA17_Chr2g0294711 39.320 206 80 3 12 217 26 186 3.28e-35 145
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1407740 AT2G22300.2 46.167 1148 452 30 5 1118 7 1022 0.0 885
Msa1407740 AT2G22300.1 46.167 1148 452 30 5 1118 7 1022 0.0 885
Msa1407740 AT2G22300.3 47.642 1060 425 29 93 1118 1 964 0.0 845
Msa1407740 AT5G64220.1 44.060 1128 499 30 3 1103 5 1027 0.0 832
Msa1407740 AT5G64220.2 44.060 1128 499 30 3 1103 5 1027 0.0 832
Msa1407740 AT5G09410.4 49.629 673 291 14 472 1118 231 881 0.0 618
Msa1407740 AT5G09410.1 49.629 673 291 14 472 1118 334 984 0.0 615
Msa1407740 AT5G09410.1 51.515 198 58 3 12 209 17 176 2.57e-51 197
Msa1407740 AT5G09410.3 49.629 673 291 14 472 1118 411 1061 0.0 615
Msa1407740 AT5G09410.3 44.737 228 58 4 12 209 76 265 3.10e-46 181
Msa1407740 AT5G09410.2 49.629 673 291 14 472 1118 352 1002 0.0 615
Msa1407740 AT5G09410.2 51.515 198 58 3 12 209 17 176 2.72e-51 197
Msa1407740 AT1G67310.1 40.569 562 286 11 537 1076 442 977 8.17e-105 353
Msa1407740 AT1G67310.1 38.172 186 69 2 12 197 37 176 1.63e-33 140
Msa1407740 AT3G16940.3 32.315 622 368 14 470 1075 217 801 6.68e-79 277
Msa1407740 AT3G16940.3 43.125 160 55 1 16 175 1 124 2.14e-31 133
Msa1407740 AT3G16940.1 32.315 622 368 14 470 1075 244 828 1.15e-78 277
Msa1407740 AT3G16940.1 40.462 173 67 1 3 175 15 151 1.54e-32 137
Msa1407740 AT3G16940.2 30.095 525 322 12 470 978 244 739 1.86e-54 204
Msa1407740 AT3G16940.2 42.683 164 58 1 12 175 24 151 8.61e-33 137

Find 220 sgRNAs with CRISPR-Local

Find 403 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGTTATTGGGTTCTGTTTC+AGG 0.110677 tig0023324:+36713 None:intergenic
TCCAACATTGTTAATGTATT+TGG 0.116953 tig0023324:+36832 None:intergenic
GATAGGGGACAGTTAGAATA+AGG 0.169692 tig0023324:+37263 None:intergenic
ATTCCCCTTCTAGTGCTTAT+TGG 0.214001 tig0023324:-35733 Msa1407740:CDS
AGGGAGAAGTGCATATTATT+TGG 0.230772 tig0023324:+32397 None:intergenic
TGTTATAGTTAGTGAGAATT+TGG 0.234871 tig0023324:+39158 None:intergenic
GAATACGATGGTGACAAATT+TGG 0.239421 tig0023324:-33702 Msa1407740:CDS
ATGAACAACCAAACATATTA+TGG 0.239719 tig0023324:+32578 None:intergenic
GAAATTTACCTTTGAGAGAT+AGG 0.252450 tig0023324:+37246 None:intergenic
ACTATTGATTCCCGTGTTAT+TGG 0.255860 tig0023324:+36700 None:intergenic
TGTGAACTCTCAAAAGTTCT+TGG 0.257449 tig0023324:-36803 Msa1407740:CDS
TCTACGTAACATGTTCTAAT+AGG 0.258394 tig0023324:-35154 Msa1407740:CDS
GCAAGATATCTTAGAAAATA+AGG 0.263006 tig0023324:-36768 Msa1407740:CDS
GCCTGAATAGGCACTATCTT+TGG 0.278496 tig0023324:+36084 None:intergenic
TTCCCCTTCTAGTGCTTATT+GGG 0.285574 tig0023324:-35732 Msa1407740:CDS
AGCAACAATTGTTGGTTCTA+AGG 0.288908 tig0023324:+34698 None:intergenic
ATTTGAAGACTCGGAAATTA+AGG 0.297823 tig0023324:-35576 Msa1407740:intron
AAAACTATGGGAAGATAATT+TGG 0.298279 tig0023324:-33365 Msa1407740:CDS
CCACCTTCATCTAATACATT+TGG 0.299243 tig0023324:+34765 None:intergenic
GTGAACTTTCGCGATGTAAA+TGG 0.307864 tig0023324:-34666 Msa1407740:CDS
TTGGTTGTTCATTGTATGTA+TGG 0.312248 tig0023324:-32567 Msa1407740:three_prime_UTR
ATACCTTCACTTCCCGATAA+TGG 0.312933 tig0023324:+37875 None:intergenic
TGAAACTGTCGAGCTTCTTC+AGG 0.320899 tig0023324:+35804 None:intergenic
CGTTGATCTTGAAGCATTGT+TGG 0.336518 tig0023324:-32647 Msa1407740:CDS
TTGCTTCCCTCATATCTCTT+GGG 0.341997 tig0023324:-34052 Msa1407740:CDS
CAGCCTTTCTTGGCTACGAT+TGG 0.345539 tig0023324:-34722 Msa1407740:CDS
CCCAAAGATAGTGCCTATTC+AGG 0.346532 tig0023324:-36085 Msa1407740:CDS
GATACAGTTGAAAGCGAAAA+TGG 0.348848 tig0023324:-35710 Msa1407740:CDS
CAGCTGAAGCTGAAGGAAAT+TGG 0.351228 tig0023324:-36598 Msa1407740:CDS
GACAAGTTAAAATCAGATCT+AGG 0.361350 tig0023324:-35911 Msa1407740:CDS
CACCTTCATCTAATACATTT+GGG 0.362638 tig0023324:+34766 None:intergenic
GGCATGCATTAAAGTTGCTT+TGG 0.362966 tig0023324:+37654 None:intergenic
GGCTATTTCTGAGGGAACTA+TGG 0.368661 tig0023324:-33268 Msa1407740:CDS
ATGAAGCAGAAGATTGTAAA+TGG 0.369204 tig0023324:-35274 Msa1407740:CDS
GTCGGTTGGGATTGTGGAAA+AGG 0.373416 tig0023324:-33343 Msa1407740:CDS
GTTGCTTCCCTCATATCTCT+TGG 0.375690 tig0023324:-34053 Msa1407740:CDS
CTATTGATTCCCGTGTTATT+GGG 0.377443 tig0023324:+36701 None:intergenic
ATTCAATAGCCATGCAAATT+CGG 0.381684 tig0023324:-37345 Msa1407740:CDS
AGCTGATCATAGCAAATAGA+TGG 0.386884 tig0023324:+35632 None:intergenic
GGTTAGATTGTAACATAATC+AGG 0.390531 tig0023324:-32545 Msa1407740:three_prime_UTR
TGAAATTGTGATAGATGATC+AGG 0.393656 tig0023324:-36912 Msa1407740:intron
GCGTCCATCCATAATATGTT+TGG 0.399301 tig0023324:-32586 Msa1407740:three_prime_UTR
ATGGATGGACTGCTCTTCAT+TGG 0.403464 tig0023324:-34647 Msa1407740:CDS
ACCAAATACATTAACAATGT+TGG 0.404096 tig0023324:-36833 Msa1407740:CDS
TGGTATTGGTCTCTTGCATC+TGG 0.406003 tig0023324:+33129 None:intergenic
CCATGCCCACAACATCCTTC+TGG 0.406110 tig0023324:-34005 Msa1407740:CDS
TTAGAAAAGATGGACATAAC+TGG 0.406867 tig0023324:-38946 Msa1407740:CDS
GGAAGATAATTTGGTCGGTT+GGG 0.407139 tig0023324:-33356 Msa1407740:CDS
CATTCAACAACCTGTGGTAT+TGG 0.408725 tig0023324:+33115 None:intergenic
ACGTGAGAGGTCACCAGGTT+AGG 0.411787 tig0023324:-33389 Msa1407740:CDS
ACATCGTTCTAGTCCATTAT+CGG 0.412410 tig0023324:-37888 Msa1407740:CDS
GTATCCCAATAAGCACTAGA+AGG 0.413133 tig0023324:+35728 None:intergenic
AATTTGGTCGGTTGGGATTG+TGG 0.413549 tig0023324:-33349 Msa1407740:CDS
GCCGACCTAGCTTCTGCAAA+TGG 0.416041 tig0023324:-33972 Msa1407740:CDS
TTTCCTTGTGAACAGGCCTC+TGG 0.421100 tig0023324:-36136 Msa1407740:intron
TTCACACCAGCAACAATTGT+TGG 0.422507 tig0023324:+34690 None:intergenic
TTAGAACCAACAATTGTTGC+TGG 0.425908 tig0023324:-34696 Msa1407740:CDS
CCTGAATAGGCACTATCTTT+GGG 0.427656 tig0023324:+36085 None:intergenic
GAATCAGAATTAATCATACT+TGG 0.428249 tig0023324:+39100 None:intergenic
CATAGTTCTCCAAGTGCACC+TGG 0.428531 tig0023324:+35663 None:intergenic
AACTGAGATACAAGAAAATC+AGG 0.429890 tig0023324:-33088 Msa1407740:intron
GAATATGAAGAAGCTGAATC+AGG 0.434942 tig0023324:-37523 Msa1407740:intron
CATTGATTATTCCCCAAGTT+GGG 0.435352 tig0023324:-35600 Msa1407740:CDS
ATAGGGGACAGTTAGAATAA+GGG 0.437858 tig0023324:+37264 None:intergenic
GGGAAGATAATTTGGTCGGT+TGG 0.442560 tig0023324:-33357 Msa1407740:CDS
GCCAGTGAATCTTTCATTGA+AGG 0.442930 tig0023324:+33807 None:intergenic
CAATTTCCTTCAGCTTCAGC+TGG 0.443285 tig0023324:+36599 None:intergenic
CGTGTTGCAGCAACATGAAC+AGG 0.444655 tig0023324:+33606 None:intergenic
AAATTTACCTTTGAGAGATA+GGG 0.446563 tig0023324:+37247 None:intergenic
AGTTGATCATGTACAAGTTC+TGG 0.447402 tig0023324:+34858 None:intergenic
AATGCGAAGTCACACAAGTC+TGG 0.449069 tig0023324:-33642 Msa1407740:CDS
TCATTGATTATTCCCCAAGT+TGG 0.450073 tig0023324:-35601 Msa1407740:CDS
TATTCCTTCCCAGGTGCACT+TGG 0.450888 tig0023324:-35672 Msa1407740:CDS
ACAACAGAGAACACTATTCC+TGG 0.452005 tig0023324:+35211 None:intergenic
AGCCTTTCTTGGCTACGATT+GGG 0.452371 tig0023324:-34721 Msa1407740:CDS
TGTAAATGGTCATGCATGTT+CGG 0.458202 tig0023324:-35260 Msa1407740:CDS
GAGTCTTCAAATGCCCAACT+TGG 0.460974 tig0023324:+35587 None:intergenic
AGTAAAATCAGTTCTTTGCT+TGG 0.461341 tig0023324:-34939 Msa1407740:CDS
CAGTTCTTTGCTTGGTAGGA+AGG 0.462643 tig0023324:-34931 Msa1407740:CDS
TTAGAACATGTTACGTAGAA+AGG 0.466234 tig0023324:+35158 None:intergenic
AATGGACACAAAGGAATTGC+TGG 0.466727 tig0023324:-33954 Msa1407740:CDS
ATATTACGTTGGCGTCGAAA+AGG 0.469061 tig0023324:-33318 Msa1407740:CDS
ACGAGATACTTTAGAAAAGA+TGG 0.469912 tig0023324:-38956 Msa1407740:CDS
GAAGTCTCTGCCTCTGTGTT+AGG 0.470588 tig0023324:+37580 None:intergenic
ACCTCAACACAAGGCTGGAC+GGG 0.474522 tig0023324:-35183 Msa1407740:CDS
TCTCAAGGATATGAGACAAT+GGG 0.476448 tig0023324:-36674 Msa1407740:CDS
CCCGAGGGAAGTCATGCTCT+TGG 0.481194 tig0023324:+35003 None:intergenic
ATATCTCTTGGGGCAGCACC+AGG 0.481476 tig0023324:-34041 Msa1407740:CDS
ATTCCAGAGAAAACAACAAA+AGG 0.481483 tig0023324:-33724 Msa1407740:CDS
CCCAAGAGCATGACTTCCCT+CGG 0.481534 tig0023324:-35004 Msa1407740:CDS
TGGATGGACTGCTCTTCATT+GGG 0.482883 tig0023324:-34646 Msa1407740:CDS
CCGAGGGAAGTCATGCTCTT+GGG 0.487143 tig0023324:+35004 None:intergenic
GGGATCGATAAAAGCCTAGT+TGG 0.487311 tig0023324:-35890 Msa1407740:CDS
CTCACACGATGAGCCTGAAT+AGG 0.489940 tig0023324:+36072 None:intergenic
CTAGTTCTTTACTCATCCAT+CGG 0.491817 tig0023324:+35780 None:intergenic
GGCTCACGTGAGAGGTCACC+AGG 0.496633 tig0023324:-33394 Msa1407740:CDS
GTTTCAGGAAAAGACTGAAA+AGG 0.498768 tig0023324:+36728 None:intergenic
TGCTTCCCTCATATCTCTTG+GGG 0.499217 tig0023324:-34051 Msa1407740:CDS
TTGGTAGGAAGGACGATGAA+TGG 0.501312 tig0023324:-34920 Msa1407740:CDS
AAATCAGTTCTTTGCTTGGT+AGG 0.505479 tig0023324:-34935 Msa1407740:CDS
CGTTGGCGTCGAAAAGGTAG+TGG 0.510926 tig0023324:-33312 Msa1407740:CDS
TTCAGAACAAGTTTCGCAGT+TGG 0.512320 tig0023324:-33581 Msa1407740:CDS
AGTCTTCAAATGCCCAACTT+GGG 0.512638 tig0023324:+35588 None:intergenic
CCAGAAGGATGTTGTGGGCA+TGG 0.516822 tig0023324:+34005 None:intergenic
TGGTTGTTCATTGTATGTAT+GGG 0.517220 tig0023324:-32566 Msa1407740:three_prime_UTR
ACCTTCAATGAAAGATTCAC+TGG 0.517231 tig0023324:-33808 Msa1407740:CDS
TTTGTTGGTGTGTATGAAGA+AGG 0.517240 tig0023324:+35984 None:intergenic
AATTTCTTCAATATCTGTTG+TGG 0.517632 tig0023324:+39225 None:intergenic
AAGGTTGCCTGTCATTCCTC+AGG 0.518272 tig0023324:-36888 Msa1407740:CDS
CATGGATCAGTAAGTGCTCC+TGG 0.519816 tig0023324:+34023 None:intergenic
TGGTAGGAAGGACGATGAAT+GGG 0.520017 tig0023324:-34919 Msa1407740:CDS
CAGTACAACTATTCCTTCCC+AGG 0.520858 tig0023324:-35681 Msa1407740:CDS
GAACAAGTTTCGCAGTTGGA+AGG 0.521020 tig0023324:-33577 Msa1407740:CDS
CATCGTTCTAGTCCATTATC+GGG 0.523240 tig0023324:-37887 Msa1407740:CDS
CTTCTTGAGTATAATTGACT+CGG 0.525223 tig0023324:+35099 None:intergenic
TGTGTCCATTTGCAGAAGCT+AGG 0.527068 tig0023324:+33967 None:intergenic
GGCCCAATCGTAGCCAAGAA+AGG 0.527167 tig0023324:+34719 None:intergenic
GATATCTTAGAAAATAAGGC+TGG 0.527732 tig0023324:-36764 Msa1407740:CDS
TAGTTATAGTGACAATGAGC+AGG 0.528100 tig0023324:-36047 Msa1407740:CDS
ACAAGTTAAAATCAGATCTA+GGG 0.529700 tig0023324:-35910 Msa1407740:CDS
AAGTGCCGGCAGAGATAACC+AGG 0.530702 tig0023324:-35229 Msa1407740:CDS
TTCTCCAAGTGCACCTGGGA+AGG 0.531264 tig0023324:+35668 None:intergenic
CTATTCCTGGTTATCTCTGC+CGG 0.532774 tig0023324:+35224 None:intergenic
GGCCCAAATGTATTAGATGA+AGG 0.533133 tig0023324:-34768 Msa1407740:CDS
GCACTTGGAGAACTATGTAC+TGG 0.534994 tig0023324:-35657 Msa1407740:CDS
TTCTACCAGAAGGATGTTGT+GGG 0.536843 tig0023324:+34000 None:intergenic
CAAATCAGAGGCTATTTCTG+AGG 0.541683 tig0023324:-33277 Msa1407740:CDS
GTGCTGCCCCAAGAGATATG+AGG 0.541703 tig0023324:+34045 None:intergenic
AACAAGTTTCGCAGTTGGAA+GGG 0.542396 tig0023324:-33576 Msa1407740:CDS
CACCTCAACACAAGGCTGGA+CGG 0.542743 tig0023324:-35184 Msa1407740:CDS
AGCTCGACAGTTTCAACCGA+TGG 0.542906 tig0023324:-35796 Msa1407740:CDS
ACCCGTCCAGCCTTGTGTTG+AGG 0.545426 tig0023324:+35182 None:intergenic
TCATCCACCTGAGGAATGAC+AGG 0.545608 tig0023324:+36881 None:intergenic
TATTACAAGCACAATATCGA+TGG 0.548796 tig0023324:-39201 Msa1407740:CDS
TTGGATTGGTTGACAATAGG+TGG 0.550074 tig0023324:-39007 Msa1407740:CDS
GAGTGTCTTCTATTCCAACT+AGG 0.550195 tig0023324:+35876 None:intergenic
AGTGTATCTGTGGCAGAAGA+GGG 0.550559 tig0023324:-35827 Msa1407740:CDS
TTTGCAGAAGCTAGGTCGGC+TGG 0.551088 tig0023324:+33975 None:intergenic
AGAATTTGGCAAATTTCAGC+CGG 0.551681 tig0023324:+39172 None:intergenic
TGAAGCTGAAGGAAATTGGC+AGG 0.551960 tig0023324:-36594 Msa1407740:intron
TGGAAAAGGTTATATTACGT+TGG 0.554077 tig0023324:-33329 Msa1407740:CDS
TATCCCAATAAGCACTAGAA+GGG 0.554536 tig0023324:+35729 None:intergenic
AATTTACCTTTGAGAGATAG+GGG 0.555076 tig0023324:+37248 None:intergenic
CGATGGATGAGTAAAGAACT+AGG 0.555800 tig0023324:-35779 Msa1407740:CDS
AAGTGTATCTGTGGCAGAAG+AGG 0.556458 tig0023324:-35828 Msa1407740:CDS
TTTATACCAGCTGAAGCTGA+AGG 0.559293 tig0023324:-36605 Msa1407740:CDS
GCAGGAAGCAAACTGAGAAA+AGG 0.561949 tig0023324:-33194 Msa1407740:CDS
GTATTAGATGAAGGTGGCCA+AGG 0.562370 tig0023324:-34759 Msa1407740:CDS
ACAACCAAACATATTATGGA+TGG 0.563921 tig0023324:+32582 None:intergenic
AAATCAGAGGCTATTTCTGA+GGG 0.564813 tig0023324:-33276 Msa1407740:CDS
ACAATATCGATGGCTACGTC+CGG 0.566740 tig0023324:-39191 Msa1407740:CDS
TTGTATGTTTGTTGATCACA+AGG 0.569291 tig0023324:+37610 None:intergenic
AAGTTGGGCATTTGAAGACT+CGG 0.569405 tig0023324:-35585 Msa1407740:CDS
CTGCAAAATGAAGCACACCT+TGG 0.570206 tig0023324:+34742 None:intergenic
TCAGAATTAATCATACTTGG+AGG 0.573939 tig0023324:+39103 None:intergenic
TCCATTTGCAGAAGCTAGGT+CGG 0.576737 tig0023324:+33971 None:intergenic
GTCTTCAAATGCCCAACTTG+GGG 0.578425 tig0023324:+35589 None:intergenic
TATACACCTCAACACAAGGC+TGG 0.578694 tig0023324:-35188 Msa1407740:CDS
ATACTGTTTAGTAATGCTGA+TGG 0.578753 tig0023324:+36640 None:intergenic
GCTAATTTCTAAGTGGCTGT+AGG 0.578993 tig0023324:+32607 None:intergenic
AACTGTCCCCTATCTCTCAA+AGG 0.580934 tig0023324:-37254 Msa1407740:intron
GGCACTATCTTTGGGCCATG+TGG 0.581003 tig0023324:+36093 None:intergenic
GGAATCAATAGTACTTCTCA+AGG 0.582466 tig0023324:-36689 Msa1407740:CDS
CCAAGAGCATGACTTCCCTC+GGG 0.583296 tig0023324:-35003 Msa1407740:CDS
GTTCGGCGAGATAGAAGTGC+CGG 0.585098 tig0023324:-35243 Msa1407740:CDS
CTATGGGAAGATAATTTGGT+CGG 0.585590 tig0023324:-33361 Msa1407740:CDS
TCATACACACCAACAAAACA+AGG 0.587677 tig0023324:-35978 Msa1407740:CDS
TAAAAGATAAACTACATGCA+TGG 0.588544 tig0023324:-34821 Msa1407740:CDS
GAAGCAAACTGAGAAAAGGT+TGG 0.588658 tig0023324:-33190 Msa1407740:CDS
TTCTCAAGGATATGAGACAA+TGG 0.588805 tig0023324:-36675 Msa1407740:CDS
TGCTGCCCCAAGAGATATGA+GGG 0.589348 tig0023324:+34046 None:intergenic
GTTCTACCAGAAGGATGTTG+TGG 0.592131 tig0023324:+33999 None:intergenic
TTATTATAGGCTCACGTGAG+AGG 0.593673 tig0023324:-33402 Msa1407740:intron
AGTAGAAATCCGAATTTGCA+TGG 0.594305 tig0023324:+37336 None:intergenic
CCATTGACTTCACTCTAGCA+AGG 0.595945 tig0023324:+33160 None:intergenic
TTGCACTGCTACTACGCCCA+TGG 0.597003 tig0023324:-38627 Msa1407740:CDS
CGAAAAGGTAGTGGTTTGCG+TGG 0.599858 tig0023324:-33303 Msa1407740:CDS
CATTGACTTCACTCTAGCAA+GGG 0.600713 tig0023324:+33161 None:intergenic
CCTTGCTAGAGTGAAGTCAA+TGG 0.603870 tig0023324:-33160 Msa1407740:CDS
TTGTTATACACCTCAACACA+AGG 0.604166 tig0023324:-35192 Msa1407740:CDS
ATTCTTTAAGCGCATCCACA+TGG 0.606620 tig0023324:-36108 Msa1407740:CDS
AGAAACATGAGAGAAACCGT+TGG 0.609159 tig0023324:-33879 Msa1407740:CDS
GACTCTATTAAGTGTATCTG+TGG 0.611735 tig0023324:-35837 Msa1407740:CDS
ATTGCTGCTTCTGATCTCAC+CGG 0.611990 tig0023324:+35067 None:intergenic
ACTCAAGAAGTCAACACTGC+CGG 0.614091 tig0023324:-35086 Msa1407740:CDS
AGTCCATTATCGGGAAGTGA+AGG 0.615277 tig0023324:-37878 Msa1407740:intron
TCGGCTGGTGTTCTACCAGA+AGG 0.617785 tig0023324:+33990 None:intergenic
TTGTGATAGATGATCAGGAA+AGG 0.618020 tig0023324:-36907 Msa1407740:intron
GTTGCCTGTCATTCCTCAGG+TGG 0.619752 tig0023324:-36885 Msa1407740:CDS
CTATTCAGGCTCATCGTGTG+AGG 0.626917 tig0023324:-36071 Msa1407740:CDS
ATGAAGAAGGAACTGTTCCA+AGG 0.628051 tig0023324:+35997 None:intergenic
ACTTTCGCGATGTAAATGGA+TGG 0.628820 tig0023324:-34662 Msa1407740:CDS
TCTGAGGGAACTATGGTACA+AGG 0.629731 tig0023324:-33261 Msa1407740:CDS
GATGGACGCTAATTTCTAAG+TGG 0.633815 tig0023324:+32600 None:intergenic
TGACCACTGTTAATGCTAGA+CGG 0.638659 tig0023324:+37553 None:intergenic
ATCCCAATAAGCACTAGAAG+GGG 0.640484 tig0023324:+35730 None:intergenic
GCTTCTGCAAATGGACACAA+AGG 0.643597 tig0023324:-33963 Msa1407740:CDS
GGAAGCTCATGAGAGACTCA+AGG 0.645990 tig0023324:-38894 Msa1407740:intron
TGAAACAGAACCCAATAACA+CGG 0.650306 tig0023324:-36711 Msa1407740:CDS
TAATCGAATCTAAATCCCGA+GGG 0.653442 tig0023324:+34988 None:intergenic
CCAAATGTATTAGATGAAGG+TGG 0.656043 tig0023324:-34765 Msa1407740:CDS
ATGCAAGAGACCAATACCAC+AGG 0.658465 tig0023324:-33125 Msa1407740:CDS
CTAATCGAATCTAAATCCCG+AGG 0.658480 tig0023324:+34987 None:intergenic
GAAACAGAACCCAATAACAC+GGG 0.662228 tig0023324:-36710 Msa1407740:CDS
ACGAACTTACTGGATGCTTG+AGG 0.663844 tig0023324:-38580 Msa1407740:CDS
TTACCGTCTAGCATTAACAG+TGG 0.677007 tig0023324:-37556 Msa1407740:CDS
GAAAAGATGGACATAACTGG+AGG 0.677852 tig0023324:-38943 Msa1407740:CDS
ATGGACTGCTCTTCATTGGG+CGG 0.678377 tig0023324:-34643 Msa1407740:CDS
AAACAACAAAAGGAATACGA+TGG 0.685779 tig0023324:-33714 Msa1407740:CDS
TTTGCGTGGATTCAAATCAG+AGG 0.685933 tig0023324:-33289 Msa1407740:CDS
TTACAACATTCAACAACCTG+TGG 0.686006 tig0023324:+33109 None:intergenic
AAAATCGTAGTCATCCTCAG+TGG 0.687131 tig0023324:+33227 None:intergenic
ATAGTTCTCCAAGTGCACCT+GGG 0.691663 tig0023324:+35664 None:intergenic
CTCAAGGATATGAGACAATG+GGG 0.695507 tig0023324:-36673 Msa1407740:CDS
ATACTTGGAGGCATATACGA+AGG 0.704350 tig0023324:+39115 None:intergenic
GCTTAAAGAATTAAAACCAG+AGG 0.714724 tig0023324:+36120 None:intergenic
CAAAGTTATGCCTAACACAG+AGG 0.717841 tig0023324:-37590 Msa1407740:CDS
AGTAAGATATCATCCACCTG+AGG 0.729515 tig0023324:+36872 None:intergenic
AGGTGTATCATCTTCCACTG+AGG 0.765631 tig0023324:-33241 Msa1407740:CDS
ACAATGCTTCAAGATCAACG+AGG 0.891821 tig0023324:+32650 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAATTTATAATCCT+TGG - tig0023324:33169-33188 Msa1407740:CDS 10.0%
!!! AAATTATTTAGTTTTAAATC+AGG - tig0023324:35216-35235 Msa1407740:CDS 10.0%
!! AAAAAGTTATTAAAAAAACA+TGG - tig0023324:36225-36244 Msa1407740:intron 10.0%
!!! AACATATCTTTCTAATTTTA+CGG - tig0023324:32946-32965 Msa1407740:intron 15.0%
!!! AGAAATTGCTAATTTTTTTT+TGG - tig0023324:33660-33679 Msa1407740:CDS 15.0%
!! GAAGAATAAAAAAATAAAGA+AGG + tig0023324:34233-34252 None:intergenic 15.0%
!! ATATTAAAATAGATACAAGA+AGG + tig0023324:34262-34281 None:intergenic 15.0%
!!! TTTCAATTTTACAATTAGTA+TGG + tig0023324:34725-34744 None:intergenic 15.0%
!!! TTTTATGAATTGTGATGTTT+TGG - tig0023324:32626-32645 Msa1407740:CDS 20.0%
!! GTTACAACTTTAATCTAAAT+TGG - tig0023324:32835-32854 Msa1407740:intron 20.0%
!! TCATATGTTATTCAATGTAA+TGG + tig0023324:32978-32997 None:intergenic 20.0%
!! TGATTAATAAAATTCCGTTA+AGG - tig0023324:33218-33237 Msa1407740:CDS 20.0%
!!! GTATAAGTTGTTATTACAAT+TGG + tig0023324:33336-33355 None:intergenic 20.0%
!!! AATTGCTAATTTTTTTTTGG+TGG - tig0023324:33663-33682 Msa1407740:CDS 20.0%
!! ACATTCTTAGTAACAATTTA+AGG - tig0023324:33879-33898 Msa1407740:CDS 20.0%
!!! GAATACCTATATTACTTTTA+AGG + tig0023324:33953-33972 None:intergenic 20.0%
!!! ATTAGATTCTTCATTTTCTT+TGG + tig0023324:34022-34041 None:intergenic 20.0%
!!! CAACAATTTATTTTGATGTA+CGG - tig0023324:34447-34466 Msa1407740:intron 20.0%
!! TTTATATATTCCGATAATGT+TGG - tig0023324:34667-34686 Msa1407740:CDS 20.0%
!!! AAAAATTTAAAGACTAGTCA+AGG - tig0023324:35399-35418 Msa1407740:intron 20.0%
!!! CTTTTAAAAGTATTTCATGA+GGG + tig0023324:35716-35735 None:intergenic 20.0%
!!! ACTACTAATATCAATTTTAC+AGG - tig0023324:36322-36341 Msa1407740:intron 20.0%
!!! GATACTTTTAATAAACGATT+TGG - tig0023324:36614-36633 Msa1407740:CDS 20.0%
!!! TGATTTTTCAATTTTCATTG+AGG - tig0023324:37541-37560 Msa1407740:CDS 20.0%
!! ATAATAAGTTAGAGGATTAA+AGG + tig0023324:38237-38256 None:intergenic 20.0%
!! TTAATCCTCTAACTTATTAT+AGG - tig0023324:38237-38256 Msa1407740:intron 20.0%
!! AAAACATATAGTGTGAAATT+TGG + tig0023324:38632-38651 None:intergenic 20.0%
!!! TTACTAGTTTATCAGAAATA+CGG - tig0023324:38697-38716 Msa1407740:intron 20.0%
!! AATTAAATGATATTAACTGC+TGG + tig0023324:38874-38893 None:intergenic 20.0%
!! TGTAGTTAAAAAGAAATTGT+AGG - tig0023324:39181-39200 Msa1407740:CDS 20.0%
!! GTAGTTAAAAAGAAATTGTA+GGG - tig0023324:39182-39201 Msa1407740:CDS 20.0%
! AATTTCTTCAATATCTGTTG+TGG + tig0023324:32430-32449 None:intergenic 25.0%
! TGTTATAGTTAGTGAGAATT+TGG + tig0023324:32497-32516 None:intergenic 25.0%
! GAATCAGAATTAATCATACT+TGG + tig0023324:32555-32574 None:intergenic 25.0%
! AAAAAGATGGAAAAACTGTT+AGG - tig0023324:32736-32755 Msa1407740:intron 25.0%
! AAAAGATGGAAAAACTGTTA+GGG - tig0023324:32737-32756 Msa1407740:intron 25.0%
!! ATACCTAAGGTTTTTATCTT+AGG + tig0023324:32808-32827 None:intergenic 25.0%
! AATGTCATTAAAATCAATCC+TGG - tig0023324:32900-32919 Msa1407740:intron 25.0%
! ATTAAAATCAATCCTGGAAT+AGG - tig0023324:32906-32925 Msa1407740:intron 25.0%
!! GAATAACATATGATGTTTTC+AGG - tig0023324:32985-33004 Msa1407740:intron 25.0%
! TTTAGTGTGAGATTTGAAAA+TGG + tig0023324:33116-33135 None:intergenic 25.0%
! TAGAATTACATGCTTTAACT+AGG + tig0023324:33631-33650 None:intergenic 25.0%
!!! ACATATAATTTTTCAGTGCT+TGG - tig0023324:33917-33936 Msa1407740:CDS 25.0%
!! AAATTTACCTTTGAGAGATA+GGG + tig0023324:34408-34427 None:intergenic 25.0%
! TACATGATTGATCGATAAAA+GGG + tig0023324:34502-34521 None:intergenic 25.0%
! ATACATGATTGATCGATAAA+AGG + tig0023324:34503-34522 None:intergenic 25.0%
!!! TCTAGAATAGAATTTTACTG+CGG + tig0023324:34614-34633 None:intergenic 25.0%
! ACCAAATACATTAACAATGT+TGG - tig0023324:34819-34838 Msa1407740:CDS 25.0%
! TCCAACATTGTTAATGTATT+TGG + tig0023324:34823-34842 None:intergenic 25.0%
! GCAAGATATCTTAGAAAATA+AGG - tig0023324:34884-34903 Msa1407740:CDS 25.0%
! GTTCTATATAAGCTTCAATA+TGG - tig0023324:35250-35269 Msa1407740:CDS 25.0%
!!! GCTTTTAAAAGTATTTCATG+AGG + tig0023324:35717-35736 None:intergenic 25.0%
! ACAAGTTAAAATCAGATCTA+GGG - tig0023324:35742-35761 Msa1407740:CDS 25.0%
! TTAAAAAAACATGGTATCCA+TGG - tig0023324:36234-36253 Msa1407740:intron 25.0%
! TAAAAGATAAACTACATGCA+TGG - tig0023324:36831-36850 Msa1407740:CDS 25.0%
! TTCAGAAAAAAACTGAAGAT+GGG - tig0023324:36858-36877 Msa1407740:CDS 25.0%
! TGACAATACATGAAACTAAT+AGG - tig0023324:37115-37134 Msa1407740:intron 25.0%
! CTGTATAAAATATGTGAAAC+AGG - tig0023324:37181-37200 Msa1407740:intron 25.0%
! AATATGCTTCATTTCATCAT+AGG - tig0023324:37244-37263 Msa1407740:intron 25.0%
! ATATGCTTCATTTCATCATA+GGG - tig0023324:37245-37264 Msa1407740:intron 25.0%
!!! TATTATTTTAGCATACCTCA+CGG + tig0023324:37365-37384 None:intergenic 25.0%
! TGCTCATTTAAATAATCGAA+GGG - tig0023324:37443-37462 Msa1407740:intron 25.0%
!! TGCATTTTACTTTCATTATC+AGG - tig0023324:37567-37586 Msa1407740:CDS 25.0%
!! GCATTTTACTTTCATTATCA+GGG - tig0023324:37568-37587 Msa1407740:CDS 25.0%
! TTTGTACATAATTCATGCAA+AGG + tig0023324:38166-38185 None:intergenic 25.0%
! AAAACTATGGGAAGATAATT+TGG - tig0023324:38287-38306 Msa1407740:intron 25.0%
!! TACTAGTTTATCAGAAATAC+GGG - tig0023324:38698-38717 Msa1407740:intron 25.0%
! GAATAAATGATATTAACTGC+TGG + tig0023324:38814-38833 None:intergenic 25.0%
! ATGAACAACCAAACATATTA+TGG + tig0023324:39077-39096 None:intergenic 25.0%
!! TGATTCAAGATTTTTCTACA+AGG + tig0023324:39151-39170 None:intergenic 25.0%
TATTACAAGCACAATATCGA+TGG - tig0023324:32451-32470 Msa1407740:three_prime_UTR 30.0%
TCAGAATTAATCATACTTGG+AGG + tig0023324:32552-32571 None:intergenic 30.0%
!! TGAATTGTGATGTTTTGGAT+TGG - tig0023324:32631-32650 Msa1407740:CDS 30.0%
!! ACTTTTCTTGTTTGATCGAA+AGG - tig0023324:32671-32690 Msa1407740:CDS 30.0%
! ACGAGATACTTTAGAAAAGA+TGG - tig0023324:32696-32715 Msa1407740:CDS 30.0%
TTAGAAAAGATGGACATAAC+TGG - tig0023324:32706-32725 Msa1407740:CDS 30.0%
CAACCTAAGATAAAAACCTT+AGG - tig0023324:32802-32821 Msa1407740:intron 30.0%
TGTAACTGTAACAATACCTA+AGG + tig0023324:32821-32840 None:intergenic 30.0%
TTCAGTTTATTTCCTATTCC+AGG + tig0023324:32921-32940 None:intergenic 30.0%
!!! ATTGTCATTTTGTTCTCCAT+GGG + tig0023324:33044-33063 None:intergenic 30.0%
!!! AATTGTCATTTTGTTCTCCA+TGG + tig0023324:33045-33064 None:intergenic 30.0%
! ATTTTCAAAGACGAACTTAC+TGG - tig0023324:33062-33081 Msa1407740:intron 30.0%
ATCCTTGGTTTATAACTAAG+TGG - tig0023324:33184-33203 Msa1407740:CDS 30.0%
AACCACTTAGTTATAAACCA+AGG + tig0023324:33189-33208 None:intergenic 30.0%
TTGGTTTATAACTAAGTGGT+TGG - tig0023324:33188-33207 Msa1407740:CDS 30.0%
! AGTTGTTATTACAATTGGAG+AGG + tig0023324:33331-33350 None:intergenic 30.0%
TTTGTATTCGACATTGTTAC+AGG - tig0023324:33731-33750 Msa1407740:CDS 30.0%
TTGTATTCGACATTGTTACA+GGG - tig0023324:33732-33751 Msa1407740:CDS 30.0%
!! TCTTTCTCCTTGTTATTTGA+TGG - tig0023324:33830-33849 Msa1407740:CDS 30.0%
TGAGATTCCATCAAATAACA+AGG + tig0023324:33840-33859 None:intergenic 30.0%
CTGGTCCTTAAAAGTAATAT+AGG - tig0023324:33945-33964 Msa1407740:CDS 30.0%
! TTGTATGTTTGTTGATCACA+AGG + tig0023324:34045-34064 None:intergenic 30.0%
ATTCAATAGCCATGCAAATT+CGG - tig0023324:34307-34326 Msa1407740:intron 30.0%
! AATTTACCTTTGAGAGATAG+GGG + tig0023324:34407-34426 None:intergenic 30.0%
! GAAATTTACCTTTGAGAGAT+AGG + tig0023324:34409-34428 None:intergenic 30.0%
!! TTAAAAGAGTGTGACTTTTG+AGG - tig0023324:34533-34552 Msa1407740:intron 30.0%
TACAATTAGTATGGCATGTA+AGG + tig0023324:34716-34735 None:intergenic 30.0%
TGAAATTGTGATAGATGATC+AGG - tig0023324:34740-34759 Msa1407740:CDS 30.0%
GATATCTTAGAAAATAAGGC+TGG - tig0023324:34888-34907 Msa1407740:CDS 30.0%
ATACTGTTTAGTAATGCTGA+TGG + tig0023324:35015-35034 None:intergenic 30.0%
! GAAATGTGTCATTCTGATAT+TGG - tig0023324:35110-35129 Msa1407740:CDS 30.0%
! TCTTAATTTTCCTTGTGAAC+AGG - tig0023324:35509-35528 Msa1407740:intron 30.0%
GCTTAAAGAATTAAAACCAG+AGG + tig0023324:35535-35554 None:intergenic 30.0%
!! AGTTGATTTTCAACAATCCT+TGG - tig0023324:35638-35657 Msa1407740:CDS 30.0%
GACAAGTTAAAATCAGATCT+AGG - tig0023324:35741-35760 Msa1407740:CDS 30.0%
ATTTGAAGACTCGGAAATTA+AGG - tig0023324:36076-36095 Msa1407740:CDS 30.0%
CAAGTGCAGAATATCAAAAT+AGG + tig0023324:36105-36124 None:intergenic 30.0%
! TTTTCTCTCTTTTTCTTCCA+TGG + tig0023324:36254-36273 None:intergenic 30.0%
AAAGTGCACTATATTGATGA+CGG - tig0023324:36279-36298 Msa1407740:intron 30.0%
! ATTTTACAGGTTCTCATTTC+AGG - tig0023324:36335-36354 Msa1407740:intron 30.0%
ATGAAGCAGAAGATTGTAAA+TGG - tig0023324:36378-36397 Msa1407740:intron 30.0%
TTAGAACATGTTACGTAGAA+AGG + tig0023324:36497-36516 None:intergenic 30.0%
TCTACGTAACATGTTCTAAT+AGG - tig0023324:36498-36517 Msa1407740:intron 30.0%
CTTCTTGAGTATAATTGACT+CGG + tig0023324:36556-36575 None:intergenic 30.0%
AGTAAAATCAGTTCTTTGCT+TGG - tig0023324:36713-36732 Msa1407740:CDS 30.0%
!!! CATCTTCAGTTTTTTTCTGA+AGG + tig0023324:36859-36878 None:intergenic 30.0%
CTTCAGAAAAAAACTGAAGA+TGG - tig0023324:36857-36876 Msa1407740:CDS 30.0%
AAAAAAACTGAAGATGGGAA+AGG - tig0023324:36863-36882 Msa1407740:CDS 30.0%
CACCTTCATCTAATACATTT+GGG + tig0023324:36889-36908 None:intergenic 30.0%
!!! TAAGCATTTTAACTTCTGCT+AGG + tig0023324:37207-37226 None:intergenic 30.0%
CATAGGGTTGAAAAATGAAA+AGG - tig0023324:37261-37280 Msa1407740:CDS 30.0%
! TTTTTCCATAACAAAAACGC+AGG + tig0023324:37296-37315 None:intergenic 30.0%
GTGCTCATTTAAATAATCGA+AGG - tig0023324:37442-37461 Msa1407740:intron 30.0%
GCTCATTTAAATAATCGAAG+GGG - tig0023324:37444-37463 Msa1407740:intron 30.0%
ATTCCAGAGAAAACAACAAA+AGG - tig0023324:37928-37947 Msa1407740:intron 30.0%
!!! ATTCCTTTTGTTGTTTTCTC+TGG + tig0023324:37934-37953 None:intergenic 30.0%
AAACAACAAAAGGAATACGA+TGG - tig0023324:37938-37957 Msa1407740:intron 30.0%
ACAGCGAATTGTAAAAATTC+AGG - tig0023324:38123-38142 Msa1407740:intron 30.0%
TACATAATTCATGCAAAGGT+TGG + tig0023324:38162-38181 None:intergenic 30.0%
TGGAAAAGGTTATATTACGT+TGG - tig0023324:38323-38342 Msa1407740:intron 30.0%
!!! GACTACGATTTTTTGAAAGA+AGG - tig0023324:38436-38455 Msa1407740:intron 30.0%
AACTGAGATACAAGAAAATC+AGG - tig0023324:38564-38583 Msa1407740:intron 30.0%
TTGCACAGTTGTGAAAAAAA+TGG + tig0023324:38658-38677 None:intergenic 30.0%
ATCAAGAATGCAAAACTTAG+AGG - tig0023324:38722-38741 Msa1407740:intron 30.0%
AACCATAATGCAAAATCATC+AGG - tig0023324:38776-38795 Msa1407740:intron 30.0%
!! AAAAGGCATTTACAAAAGAC+TGG + tig0023324:38925-38944 None:intergenic 30.0%
! CTTTTGTAAATGCCTTTTGT+AGG - tig0023324:38927-38946 Msa1407740:CDS 30.0%
ACAACCAAACATATTATGGA+TGG + tig0023324:39073-39092 None:intergenic 30.0%
TTGGTTGTTCATTGTATGTA+TGG - tig0023324:39085-39104 Msa1407740:CDS 30.0%
TGGTTGTTCATTGTATGTAT+GGG - tig0023324:39086-39105 Msa1407740:CDS 30.0%
GGTTAGATTGTAACATAATC+AGG - tig0023324:39107-39126 Msa1407740:CDS 30.0%
! AGTTTTTGCATTTTTGTGTG+AGG + tig0023324:39221-39240 None:intergenic 30.0%
AGAATTTGGCAAATTTCAGC+CGG + tig0023324:32483-32502 None:intergenic 35.0%
!!! GTTTTGGATTGGTTGACAAT+AGG - tig0023324:32642-32661 Msa1407740:CDS 35.0%
AACTGGAGGAAGAAAAAAGA+TGG - tig0023324:32723-32742 Msa1407740:intron 35.0%
!! AACATATGATGTTTTCAGGC+TGG - tig0023324:32989-33008 Msa1407740:intron 35.0%
AGAGAACGATTTGACCTTAA+CGG + tig0023324:33235-33254 None:intergenic 35.0%
! CAGACAAGGCTTTAACATAA+AGG + tig0023324:33366-33385 None:intergenic 35.0%
ATTAAGCGCTTATTCAGACA+AGG + tig0023324:33380-33399 None:intergenic 35.0%
CAATACCAATATGTGTGAGA+TGG + tig0023324:33475-33494 None:intergenic 35.0%
! TTTTCTTCATTTGCTCTGCA+TGG + tig0023324:33499-33518 None:intergenic 35.0%
GTATTGCTGATCACATGTAT+TGG + tig0023324:33589-33608 None:intergenic 35.0%
!! AAAGAAGTACTTCCAGAGAT+AGG + tig0023324:33691-33710 None:intergenic 35.0%
!!! TCTCTGGAAGTACTTCTTTT+AGG - tig0023324:33692-33711 Msa1407740:CDS 35.0%
ACATCGTTCTAGTCCATTAT+CGG - tig0023324:33764-33783 Msa1407740:CDS 35.0%
! TTTTCAGTGCTTGGTAAATC+TGG - tig0023324:33926-33945 Msa1407740:CDS 35.0%
!!! TGATCAAGTTTTTTCCTCCA+GGG - tig0023324:33973-33992 Msa1407740:CDS 35.0%
GAATATGAAGAAGCTGAATC+AGG - tig0023324:34129-34148 Msa1407740:intron 35.0%
GGCTATTCAAAAAGTTCTCT+AGG + tig0023324:34212-34231 None:intergenic 35.0%
AGTAGAAATCCGAATTTGCA+TGG + tig0023324:34319-34338 None:intergenic 35.0%
! GCTTTAATCTTTTGAACAGC+AGG + tig0023324:34362-34381 None:intergenic 35.0%
ATAGGGGACAGTTAGAATAA+GGG + tig0023324:34391-34410 None:intergenic 35.0%
TTGTGATAGATGATCAGGAA+AGG - tig0023324:34745-34764 Msa1407740:CDS 35.0%
TGTGAACTCTCAAAAGTTCT+TGG - tig0023324:34849-34868 Msa1407740:CDS 35.0%
!! AAGTTCTTGGCTTTTCATCA+TGG - tig0023324:34862-34881 Msa1407740:CDS 35.0%
GTTTCAGGAAAAGACTGAAA+AGG + tig0023324:34927-34946 None:intergenic 35.0%
TGAAACAGAACCCAATAACA+CGG - tig0023324:34941-34960 Msa1407740:CDS 35.0%
!! CTATTGATTCCCGTGTTATT+GGG + tig0023324:34954-34973 None:intergenic 35.0%
!! ACTATTGATTCCCGTGTTAT+TGG + tig0023324:34955-34974 None:intergenic 35.0%
GGAATCAATAGTACTTCTCA+AGG - tig0023324:34963-34982 Msa1407740:CDS 35.0%
TTCTCAAGGATATGAGACAA+TGG - tig0023324:34977-34996 Msa1407740:CDS 35.0%
TCTCAAGGATATGAGACAAT+GGG - tig0023324:34978-34997 Msa1407740:CDS 35.0%
AACCATGTCTGCAAGTAAAA+TGG - tig0023324:35156-35175 Msa1407740:CDS 35.0%
! ATCCATTTTACTTGCAGACA+TGG + tig0023324:35161-35180 None:intergenic 35.0%
GAGCAGTTAAATGAGTTTGA+TGG + tig0023324:35480-35499 None:intergenic 35.0%
TAGTTATAGTGACAATGAGC+AGG - tig0023324:35605-35624 Msa1407740:CDS 35.0%
TTTGTTGGTGTGTATGAAGA+AGG + tig0023324:35671-35690 None:intergenic 35.0%
TCATACACACCAACAAAACA+AGG - tig0023324:35674-35693 Msa1407740:CDS 35.0%
!!! GCATAAGAACCTTGTTTTGT+TGG + tig0023324:35686-35705 None:intergenic 35.0%
GACTCTATTAAGTGTATCTG+TGG - tig0023324:35815-35834 Msa1407740:CDS 35.0%
! CTAGTTCTTTACTCATCCAT+CGG + tig0023324:35875-35894 None:intergenic 35.0%
TATCCCAATAAGCACTAGAA+GGG + tig0023324:35926-35945 None:intergenic 35.0%
GATACAGTTGAAAGCGAAAA+TGG - tig0023324:35942-35961 Msa1407740:CDS 35.0%
AGCTGATCATAGCAAATAGA+TGG + tig0023324:36023-36042 None:intergenic 35.0%
! TCATTGATTATTCCCCAAGT+TGG - tig0023324:36051-36070 Msa1407740:CDS 35.0%
! CATTGATTATTCCCCAAGTT+GGG - tig0023324:36052-36071 Msa1407740:CDS 35.0%
AGTGAACATATGGTCAAAAC+TGG + tig0023324:36128-36147 None:intergenic 35.0%
ACAACAGTTCAGTGAACATA+TGG + tig0023324:36138-36157 None:intergenic 35.0%
TTGTTATACACCTCAACACA+AGG - tig0023324:36460-36479 Msa1407740:intron 35.0%
TAATCGAATCTAAATCCCGA+GGG + tig0023324:36667-36686 None:intergenic 35.0%
AAATCAGTTCTTTGCTTGGT+AGG - tig0023324:36717-36736 Msa1407740:CDS 35.0%
AGTTGATCATGTACAAGTTC+TGG + tig0023324:36797-36816 None:intergenic 35.0%
CCACCTTCATCTAATACATT+TGG + tig0023324:36890-36909 None:intergenic 35.0%
CCAAATGTATTAGATGAAGG+TGG - tig0023324:36887-36906 Msa1407740:CDS 35.0%
!! AGCAACAATTGTTGGTTCTA+AGG + tig0023324:36957-36976 None:intergenic 35.0%
TTAGAACCAACAATTGTTGC+TGG - tig0023324:36956-36975 Msa1407740:intron 35.0%
ATTGTCAAAGTGTATCGTGT+TGG + tig0023324:37102-37121 None:intergenic 35.0%
GGGTTGAAAAATGAAAAGGT+TGG - tig0023324:37265-37284 Msa1407740:CDS 35.0%
! AAGTACCTGCGTTTTTGTTA+TGG - tig0023324:37288-37307 Msa1407740:CDS 35.0%
! GTCGTGTCTTTTAAATACAC+AGG + tig0023324:37396-37415 None:intergenic 35.0%
ACGACATCCCTAACAAATAA+AGG - tig0023324:37411-37430 Msa1407740:intron 35.0%
ACATCCCTAACAAATAAAGG+TGG - tig0023324:37414-37433 Msa1407740:intron 35.0%
! CTCACCACCTTTATTTGTTA+GGG + tig0023324:37421-37440 None:intergenic 35.0%
! TCTCACCACCTTTATTTGTT+AGG + tig0023324:37422-37441 None:intergenic 35.0%
TTACTTTCATTATCAGGGAG+AGG - tig0023324:37573-37592 Msa1407740:CDS 35.0%
!!! GACTCTTTGTTTTGTTCCAA+CGG + tig0023324:37792-37811 None:intergenic 35.0%
!! AGCACTCATTGTTTTGTTCT+CGG + tig0023324:37814-37833 None:intergenic 35.0%
ACCTTCAATGAAAGATTCAC+TGG - tig0023324:37844-37863 Msa1407740:intron 35.0%
GAATACGATGGTGACAAATT+TGG - tig0023324:37950-37969 Msa1407740:intron 35.0%
GTGAGCCTATAATAAGTTAG+AGG + tig0023324:38245-38264 None:intergenic 35.0%
ACCAGGTTAGGAAAAACTAT+GGG - tig0023324:38275-38294 Msa1407740:intron 35.0%
CTATGGGAAGATAATTTGGT+CGG - tig0023324:38291-38310 Msa1407740:intron 35.0%
!! AAATCAGAGGCTATTTCTGA+GGG - tig0023324:38376-38395 Msa1407740:intron 35.0%
!!! ACGATTTTTTGAAAGAAGGC+AGG - tig0023324:38440-38459 Msa1407740:intron 35.0%
TTACAACATTCAACAACCTG+TGG + tig0023324:38546-38565 None:intergenic 35.0%
! GTCCTGATGATTTTGCATTA+TGG + tig0023324:38781-38800 None:intergenic 35.0%
ATTGCCAGCAAAAAATCATC+AGG - tig0023324:38836-38855 Msa1407740:intron 35.0%
!!! AAGTCCTGATGATTTTTTGC+TGG + tig0023324:38843-38862 None:intergenic 35.0%
GATCTTGCTTTACCTACAAA+AGG + tig0023324:38942-38961 None:intergenic 35.0%
! ATACTTGGAGGCATATACGA+AGG + tig0023324:32540-32559 None:intergenic 40.0%
!! TTGGATTGGTTGACAATAGG+TGG - tig0023324:32645-32664 Msa1407740:CDS 40.0%
GAAAAGATGGACATAACTGG+AGG - tig0023324:32709-32728 Msa1407740:intron 40.0%
! AAGGCAGAAACTTTGAAGGA+GGG + tig0023324:33438-33457 None:intergenic 40.0%
TGTCTCCATCTCACACATAT+TGG - tig0023324:33467-33486 Msa1407740:intron 40.0%
GATGCATTTGTTCTTGCTTG+AGG - tig0023324:33548-33567 Msa1407740:CDS 40.0%
!! TTTTTGGTGGTTCCTATCTC+TGG - tig0023324:33676-33695 Msa1407740:CDS 40.0%
CATCGTTCTAGTCCATTATC+GGG - tig0023324:33765-33784 Msa1407740:CDS 40.0%
ATACCTTCACTTCCCGATAA+TGG + tig0023324:33780-33799 None:intergenic 40.0%
!!! CTGATCAAGTTTTTTCCTCC+AGG - tig0023324:33972-33991 Msa1407740:CDS 40.0%
! TTAAAGTTGCTTTGGTTCCC+TGG + tig0023324:33993-34012 None:intergenic 40.0%
GGCATGCATTAAAGTTGCTT+TGG + tig0023324:34001-34020 None:intergenic 40.0%
CAAAGTTATGCCTAACACAG+AGG - tig0023324:34062-34081 Msa1407740:CDS 40.0%
TTACCGTCTAGCATTAACAG+TGG - tig0023324:34096-34115 Msa1407740:intron 40.0%
TGACCACTGTTAATGCTAGA+CGG + tig0023324:34102-34121 None:intergenic 40.0%
GATAGGGGACAGTTAGAATA+AGG + tig0023324:34392-34411 None:intergenic 40.0%
CAAACTTAGTGACGTAGCAA+TGG - tig0023324:34560-34579 Msa1407740:intron 40.0%
!! ATTCCGATAATGTTGGCCTT+TGG - tig0023324:34674-34693 Msa1407740:CDS 40.0%
GATCCAAAGGCCAACATTAT+CGG + tig0023324:34680-34699 None:intergenic 40.0%
!! ATAATGTTGGCCTTTGGATC+AGG - tig0023324:34680-34699 Msa1407740:CDS 40.0%
TAAGATCTTGCCTGATCCAA+AGG + tig0023324:34693-34712 None:intergenic 40.0%
AGTAAGATATCATCCACCTG+AGG + tig0023324:34783-34802 None:intergenic 40.0%
! GTGTTATTGGGTTCTGTTTC+AGG + tig0023324:34942-34961 None:intergenic 40.0%
GAAACAGAACCCAATAACAC+GGG - tig0023324:34942-34961 Msa1407740:CDS 40.0%
CTCAAGGATATGAGACAATG+GGG - tig0023324:34979-34998 Msa1407740:CDS 40.0%
TTTATACCAGCTGAAGCTGA+AGG - tig0023324:35047-35066 Msa1407740:CDS 40.0%
TGAAGGAAATTGGCAGGTAT+GGG - tig0023324:35064-35083 Msa1407740:CDS 40.0%
GACTCACTACAAAGTGATGT+TGG - tig0023324:35309-35328 Msa1407740:CDS 40.0%
ATTCTTTAAGCGCATCCACA+TGG - tig0023324:35544-35563 Msa1407740:intron 40.0%
CCTGAATAGGCACTATCTTT+GGG + tig0023324:35570-35589 None:intergenic 40.0%
ATGAAGAAGGAACTGTTCCA+AGG + tig0023324:35658-35677 None:intergenic 40.0%
GAGTGTCTTCTATTCCAACT+AGG + tig0023324:35779-35798 None:intergenic 40.0%
CGATGGATGAGTAAAGAACT+AGG - tig0023324:35873-35892 Msa1407740:CDS 40.0%
ATTCCCCTTCTAGTGCTTAT+TGG - tig0023324:35919-35938 Msa1407740:CDS 40.0%
TTCCCCTTCTAGTGCTTATT+GGG - tig0023324:35920-35939 Msa1407740:CDS 40.0%
ATCCCAATAAGCACTAGAAG+GGG + tig0023324:35925-35944 None:intergenic 40.0%
GTATCCCAATAAGCACTAGA+AGG + tig0023324:35927-35946 None:intergenic 40.0%
AGTCTTCAAATGCCCAACTT+GGG + tig0023324:36067-36086 None:intergenic 40.0%
AAGTTGGGCATTTGAAGACT+CGG - tig0023324:36067-36086 Msa1407740:CDS 40.0%
ACAACAGAGAACACTATTCC+TGG + tig0023324:36444-36463 None:intergenic 40.0%
CTAATCGAATCTAAATCCCG+AGG + tig0023324:36668-36687 None:intergenic 40.0%
GGCCCAAATGTATTAGATGA+AGG - tig0023324:36884-36903 Msa1407740:CDS 40.0%
! CTTCATTTTGCAGCCTTTCT+TGG - tig0023324:36920-36939 Msa1407740:intron 40.0%
TTCACACCAGCAACAATTGT+TGG + tig0023324:36965-36984 None:intergenic 40.0%
GTGAACTTTCGCGATGTAAA+TGG - tig0023324:36986-37005 Msa1407740:intron 40.0%
ACTTTCGCGATGTAAATGGA+TGG - tig0023324:36990-37009 Msa1407740:intron 40.0%
! TAAATAATCGAAGGGGTGTG+TGG - tig0023324:37451-37470 Msa1407740:intron 40.0%
! AAATAATCGAAGGGGTGTGT+GGG - tig0023324:37452-37471 Msa1407740:intron 40.0%
TGGGCTATTTAAGCATACCT+CGG - tig0023324:37471-37490 Msa1407740:intron 40.0%
ATTTAAGCATACCTCGGGAA+AGG - tig0023324:37477-37496 Msa1407740:intron 40.0%
! TGGACTCTTTTCATGGGAAA+TGG + tig0023324:37509-37528 None:intergenic 40.0%
! TCACGTTGGACTCTTTTCAT+GGG + tig0023324:37515-37534 None:intergenic 40.0%
AAAAATCACGAGTCTCACGT+TGG + tig0023324:37529-37548 None:intergenic 40.0%
TTGCTTCCCTCATATCTCTT+GGG - tig0023324:37600-37619 Msa1407740:CDS 40.0%
TTCTACCAGAAGGATGTTGT+GGG + tig0023324:37655-37674 None:intergenic 40.0%
AATGGACACAAAGGAATTGC+TGG - tig0023324:37698-37717 Msa1407740:intron 40.0%
AGAAACATGAGAGAAACCGT+TGG - tig0023324:37773-37792 Msa1407740:intron 40.0%
GCCAGTGAATCTTTCATTGA+AGG + tig0023324:37848-37867 None:intergenic 40.0%
TTCAGAACAAGTTTCGCAGT+TGG - tig0023324:38071-38090 Msa1407740:intron 40.0%
AACAAGTTTCGCAGTTGGAA+GGG - tig0023324:38076-38095 Msa1407740:intron 40.0%
TTATTATAGGCTCACGTGAG+AGG - tig0023324:38250-38269 Msa1407740:intron 40.0%
CACCAGGTTAGGAAAAACTA+TGG - tig0023324:38274-38293 Msa1407740:intron 40.0%
! TCCCATAGTTTTTCCTAACC+TGG + tig0023324:38279-38298 None:intergenic 40.0%
GGAAGATAATTTGGTCGGTT+GGG - tig0023324:38296-38315 Msa1407740:intron 40.0%
! ATATTACGTTGGCGTCGAAA+AGG - tig0023324:38334-38353 Msa1407740:intron 40.0%
TTTGCGTGGATTCAAATCAG+AGG - tig0023324:38363-38382 Msa1407740:intron 40.0%
!! CAAATCAGAGGCTATTTCTG+AGG - tig0023324:38375-38394 Msa1407740:intron 40.0%
AAAATCGTAGTCATCCTCAG+TGG + tig0023324:38428-38447 None:intergenic 40.0%
GAAGCAAACTGAGAAAAGGT+TGG - tig0023324:38462-38481 Msa1407740:intron 40.0%
!! CATTGACTTCACTCTAGCAA+GGG + tig0023324:38494-38513 None:intergenic 40.0%
CATTCAACAACCTGTGGTAT+TGG + tig0023324:38540-38559 None:intergenic 40.0%
TATGGTTCAGCAGATGATTC+AGG + tig0023324:38763-38782 None:intergenic 40.0%
ACAATGCTTCAAGATCAACG+AGG + tig0023324:39005-39024 None:intergenic 40.0%
!! CGTTGATCTTGAAGCATTGT+TGG - tig0023324:39005-39024 Msa1407740:CDS 40.0%
GCTAATTTCTAAGTGGCTGT+AGG + tig0023324:39048-39067 None:intergenic 40.0%
GATGGACGCTAATTTCTAAG+TGG + tig0023324:39055-39074 None:intergenic 40.0%
GCGTCCATCCATAATATGTT+TGG - tig0023324:39066-39085 Msa1407740:CDS 40.0%
ACAATATCGATGGCTACGTC+CGG - tig0023324:32461-32480 Msa1407740:three_prime_UTR 45.0%
!! ATGTTTTCAGGCTGGAAGTG+TGG - tig0023324:32997-33016 Msa1407740:intron 45.0%
ACGAACTTACTGGATGCTTG+AGG - tig0023324:33072-33091 Msa1407740:intron 45.0%
! CAAGGCAGAAACTTTGAAGG+AGG + tig0023324:33439-33458 None:intergenic 45.0%
AGGCAAGGCAGAAACTTTGA+AGG + tig0023324:33442-33461 None:intergenic 45.0%
AGTCCATTATCGGGAAGTGA+AGG - tig0023324:33774-33793 Msa1407740:CDS 45.0%
AACTGTCCCCTATCTCTCAA+AGG - tig0023324:34398-34417 Msa1407740:intron 45.0%
CTTAGTGACGTAGCAATGGA+TGG - tig0023324:34564-34583 Msa1407740:intron 45.0%
CAATTTCCTTCAGCTTCAGC+TGG + tig0023324:35056-35075 None:intergenic 45.0%
CAGCTGAAGCTGAAGGAAAT+TGG - tig0023324:35054-35073 Msa1407740:CDS 45.0%
TGAAGCTGAAGGAAATTGGC+AGG - tig0023324:35058-35077 Msa1407740:CDS 45.0%
CTGAAGGAAATTGGCAGGTA+TGG - tig0023324:35063-35082 Msa1407740:CDS 45.0%
CCCAAAGATAGTGCCTATTC+AGG - tig0023324:35567-35586 Msa1407740:intron 45.0%
GCCTGAATAGGCACTATCTT+TGG + tig0023324:35571-35590 None:intergenic 45.0%
GGGATCGATAAAAGCCTAGT+TGG - tig0023324:35762-35781 Msa1407740:CDS 45.0%
AAGTGTATCTGTGGCAGAAG+AGG - tig0023324:35824-35843 Msa1407740:CDS 45.0%
AGTGTATCTGTGGCAGAAGA+GGG - tig0023324:35825-35844 Msa1407740:CDS 45.0%
TGAAACTGTCGAGCTTCTTC+AGG + tig0023324:35851-35870 None:intergenic 45.0%
CAGTACAACTATTCCTTCCC+AGG - tig0023324:35971-35990 Msa1407740:CDS 45.0%
ATAGTTCTCCAAGTGCACCT+GGG + tig0023324:35991-36010 None:intergenic 45.0%
GCACTTGGAGAACTATGTAC+TGG - tig0023324:35995-36014 Msa1407740:CDS 45.0%
GTCTTCAAATGCCCAACTTG+GGG + tig0023324:36066-36085 None:intergenic 45.0%
GAGTCTTCAAATGCCCAACT+TGG + tig0023324:36068-36087 None:intergenic 45.0%
CTATTCCTGGTTATCTCTGC+CGG + tig0023324:36431-36450 None:intergenic 45.0%
TATACACCTCAACACAAGGC+TGG - tig0023324:36464-36483 Msa1407740:intron 45.0%
ACTCAAGAAGTCAACACTGC+CGG - tig0023324:36566-36585 Msa1407740:intron 45.0%
! ATTGCTGCTTCTGATCTCAC+CGG + tig0023324:36588-36607 None:intergenic 45.0%
CAGTTCTTTGCTTGGTAGGA+AGG - tig0023324:36721-36740 Msa1407740:CDS 45.0%
TTGGTAGGAAGGACGATGAA+TGG - tig0023324:36732-36751 Msa1407740:CDS 45.0%
TGGTAGGAAGGACGATGAAT+GGG - tig0023324:36733-36752 Msa1407740:CDS 45.0%
GTATTAGATGAAGGTGGCCA+AGG - tig0023324:36893-36912 Msa1407740:CDS 45.0%
CTGCAAAATGAAGCACACCT+TGG + tig0023324:36913-36932 None:intergenic 45.0%
AGCCTTTCTTGGCTACGATT+GGG - tig0023324:36931-36950 Msa1407740:intron 45.0%
!! ATGGATGGACTGCTCTTCAT+TGG - tig0023324:37005-37024 Msa1407740:intron 45.0%
!! TGGATGGACTGCTCTTCATT+GGG - tig0023324:37006-37025 Msa1407740:intron 45.0%
AATTGCACTCATCTTCCGTG+AGG - tig0023324:37347-37366 Msa1407740:CDS 45.0%
GGGCTATTTAAGCATACCTC+GGG - tig0023324:37472-37491 Msa1407740:intron 45.0%
! CTCACGTTGGACTCTTTTCA+TGG + tig0023324:37516-37535 None:intergenic 45.0%
GTTGCTTCCCTCATATCTCT+TGG - tig0023324:37599-37618 Msa1407740:CDS 45.0%
TGCTTCCCTCATATCTCTTG+GGG - tig0023324:37601-37620 Msa1407740:CDS 45.0%
GTTCTACCAGAAGGATGTTG+TGG + tig0023324:37656-37675 None:intergenic 45.0%
TCCATTTGCAGAAGCTAGGT+CGG + tig0023324:37684-37703 None:intergenic 45.0%
TGTGTCCATTTGCAGAAGCT+AGG + tig0023324:37688-37707 None:intergenic 45.0%
GCTTCTGCAAATGGACACAA+AGG - tig0023324:37689-37708 Msa1407740:intron 45.0%
AATGCGAAGTCACACAAGTC+TGG - tig0023324:38010-38029 Msa1407740:intron 45.0%
GAACAAGTTTCGCAGTTGGA+AGG - tig0023324:38075-38094 Msa1407740:intron 45.0%
GGGAAGATAATTTGGTCGGT+TGG - tig0023324:38295-38314 Msa1407740:intron 45.0%
AATTTGGTCGGTTGGGATTG+TGG - tig0023324:38303-38322 Msa1407740:intron 45.0%
!! GGCTATTTCTGAGGGAACTA+TGG - tig0023324:38384-38403 Msa1407740:intron 45.0%
TCTGAGGGAACTATGGTACA+AGG - tig0023324:38391-38410 Msa1407740:intron 45.0%
AGGTGTATCATCTTCCACTG+AGG - tig0023324:38411-38430 Msa1407740:intron 45.0%
GCAGGAAGCAAACTGAGAAA+AGG - tig0023324:38458-38477 Msa1407740:intron 45.0%
!! CCATTGACTTCACTCTAGCA+AGG + tig0023324:38495-38514 None:intergenic 45.0%
CCTTGCTAGAGTGAAGTCAA+TGG - tig0023324:38492-38511 Msa1407740:intron 45.0%
!! TGGTATTGGTCTCTTGCATC+TGG + tig0023324:38526-38545 None:intergenic 45.0%
ATGCAAGAGACCAATACCAC+AGG - tig0023324:38527-38546 Msa1407740:intron 45.0%
GTTCAGCAGATGATTCAGGT+GGG + tig0023324:38759-38778 None:intergenic 45.0%
! AAAGACTGGCTAAGCTTTGC+TGG + tig0023324:38911-38930 None:intergenic 45.0%
GGAAGCTCATGAGAGACTCA+AGG - tig0023324:32758-32777 Msa1407740:intron 50.0%
TGTGAGATGGAGACAAAGCG+AGG + tig0023324:33462-33481 None:intergenic 50.0%
! AAGTTGCTTTGGTTCCCTGG+AGG + tig0023324:33990-34009 None:intergenic 50.0%
GAAGTCTCTGCCTCTGTGTT+AGG + tig0023324:34075-34094 None:intergenic 50.0%
AAGGTTGCCTGTCATTCCTC+AGG - tig0023324:34764-34783 Msa1407740:CDS 50.0%
TCATCCACCTGAGGAATGAC+AGG + tig0023324:34774-34793 None:intergenic 50.0%
TTTCCTTGTGAACAGGCCTC+TGG - tig0023324:35516-35535 Msa1407740:intron 50.0%
AAACCAGAGGCCTGTTCACA+AGG + tig0023324:35522-35541 None:intergenic 50.0%
CTCACACGATGAGCCTGAAT+AGG + tig0023324:35583-35602 None:intergenic 50.0%
CTATTCAGGCTCATCGTGTG+AGG - tig0023324:35581-35600 Msa1407740:CDS 50.0%
AGCTCGACAGTTTCAACCGA+TGG - tig0023324:35856-35875 Msa1407740:CDS 50.0%
TATTCCTTCCCAGGTGCACT+TGG - tig0023324:35980-35999 Msa1407740:CDS 50.0%
CATAGTTCTCCAAGTGCACC+TGG + tig0023324:35992-36011 None:intergenic 50.0%
CAGCCTTTCTTGGCTACGAT+TGG - tig0023324:36930-36949 Msa1407740:intron 50.0%
! ATGGACTGCTCTTCATTGGG+CGG - tig0023324:37009-37028 Msa1407740:intron 50.0%
TGCTGCCCCAAGAGATATGA+GGG + tig0023324:37609-37628 None:intergenic 50.0%
CATGGATCAGTAAGTGCTCC+TGG + tig0023324:37632-37651 None:intergenic 50.0%
CGTGTTGCAGCAACATGAAC+AGG + tig0023324:38049-38068 None:intergenic 50.0%
GTCGGTTGGGATTGTGGAAA+AGG - tig0023324:38309-38328 Msa1407740:intron 50.0%
! CGAAAAGGTAGTGGTTTGCG+TGG - tig0023324:38349-38368 Msa1407740:intron 50.0%
GGTTCAGCAGATGATTCAGG+TGG + tig0023324:38760-38779 None:intergenic 50.0%
TTGCACTGCTACTACGCCCA+TGG - tig0023324:33025-33044 Msa1407740:intron 55.0%
GATGGAGACAAAGCGAGGCA+AGG + tig0023324:33457-33476 None:intergenic 55.0%
GTTGCCTGTCATTCCTCAGG+TGG - tig0023324:34767-34786 Msa1407740:CDS 55.0%
GGCACTATCTTTGGGCCATG+TGG + tig0023324:35562-35581 None:intergenic 55.0%
TTCTCCAAGTGCACCTGGGA+AGG + tig0023324:35987-36006 None:intergenic 55.0%
! GTTCGGCGAGATAGAAGTGC+CGG - tig0023324:36409-36428 Msa1407740:intron 55.0%
!! AAGTGCCGGCAGAGATAACC+AGG - tig0023324:36423-36442 Msa1407740:intron 55.0%
CACCTCAACACAAGGCTGGA+CGG - tig0023324:36468-36487 Msa1407740:intron 55.0%
ACCTCAACACAAGGCTGGAC+GGG - tig0023324:36469-36488 Msa1407740:intron 55.0%
CCGAGGGAAGTCATGCTCTT+GGG + tig0023324:36651-36670 None:intergenic 55.0%
! CCCAAGAGCATGACTTCCCT+CGG - tig0023324:36648-36667 Msa1407740:CDS 55.0%
! CCAAGAGCATGACTTCCCTC+GGG - tig0023324:36649-36668 Msa1407740:CDS 55.0%
GGCCCAATCGTAGCCAAGAA+AGG + tig0023324:36936-36955 None:intergenic 55.0%
! CTTCATTGGGCGGCGTTTTG+TGG - tig0023324:37019-37038 Msa1407740:intron 55.0%
GTGCTGCCCCAAGAGATATG+AGG + tig0023324:37610-37629 None:intergenic 55.0%
ATATCTCTTGGGGCAGCACC+AGG - tig0023324:37611-37630 Msa1407740:CDS 55.0%
CCAGAAGGATGTTGTGGGCA+TGG + tig0023324:37650-37669 None:intergenic 55.0%
CCATGCCCACAACATCCTTC+TGG - tig0023324:37647-37666 Msa1407740:CDS 55.0%
TCGGCTGGTGTTCTACCAGA+AGG + tig0023324:37665-37684 None:intergenic 55.0%
TTTGCAGAAGCTAGGTCGGC+TGG + tig0023324:37680-37699 None:intergenic 55.0%
GCCGACCTAGCTTCTGCAAA+TGG - tig0023324:37680-37699 Msa1407740:intron 55.0%
ACGTGAGAGGTCACCAGGTT+AGG - tig0023324:38263-38282 Msa1407740:intron 55.0%
! CGTTGGCGTCGAAAAGGTAG+TGG - tig0023324:38340-38359 Msa1407740:intron 55.0%
! ACCCGTCCAGCCTTGTGTTG+AGG + tig0023324:36473-36492 None:intergenic 60.0%
CCCGAGGGAAGTCATGCTCT+TGG + tig0023324:36652-36671 None:intergenic 60.0%
! ATTGGGCGGCGTTTTGTGGC+AGG - tig0023324:37023-37042 Msa1407740:intron 60.0%
AATGGCTCTCGCCTTTCCCG+AGG + tig0023324:37491-37510 None:intergenic 60.0%
GGCTCACGTGAGAGGTCACC+AGG - tig0023324:38258-38277 Msa1407740:intron 65.0%
Chromosome Type Strat End Strand Name
tig0023324 gene 32402 39272 32402 ID=Msa1407740;Name=Msa1407740
tig0023324 mRNA 32402 39272 32402 ID=Msa1407740-mRNA-1;Parent=Msa1407740;Name=Msa1407740-mRNA-1;_AED=0.22;_eAED=0.23;_QI=0|1|0.90|1|1|1|11|213|1122
tig0023324 exon 32402 32725 32402 ID=Msa1407740-mRNA-1:exon:25317;Parent=Msa1407740-mRNA-1
tig0023324 exon 33089 33415 33089 ID=Msa1407740-mRNA-1:exon:25316;Parent=Msa1407740-mRNA-1
tig0023324 exon 33530 34085 33530 ID=Msa1407740-mRNA-1:exon:25315;Parent=Msa1407740-mRNA-1
tig0023324 exon 34630 35330 34630 ID=Msa1407740-mRNA-1:exon:25314;Parent=Msa1407740-mRNA-1
tig0023324 exon 35577 36143 35577 ID=Msa1407740-mRNA-1:exon:25313;Parent=Msa1407740-mRNA-1
tig0023324 exon 36595 36920 36595 ID=Msa1407740-mRNA-1:exon:25312;Parent=Msa1407740-mRNA-1
tig0023324 exon 37255 37368 37255 ID=Msa1407740-mRNA-1:exon:25311;Parent=Msa1407740-mRNA-1
tig0023324 exon 37524 37680 37524 ID=Msa1407740-mRNA-1:exon:25310;Parent=Msa1407740-mRNA-1
tig0023324 exon 37879 37921 37879 ID=Msa1407740-mRNA-1:exon:25309;Parent=Msa1407740-mRNA-1
tig0023324 exon 38579 38667 38579 ID=Msa1407740-mRNA-1:exon:25308;Parent=Msa1407740-mRNA-1
tig0023324 exon 38895 39272 38895 ID=Msa1407740-mRNA-1:exon:25307;Parent=Msa1407740-mRNA-1
tig0023324 CDS 38895 39272 38895 ID=Msa1407740-mRNA-1:cds;Parent=Msa1407740-mRNA-1
tig0023324 CDS 38579 38667 38579 ID=Msa1407740-mRNA-1:cds;Parent=Msa1407740-mRNA-1
tig0023324 CDS 37879 37921 37879 ID=Msa1407740-mRNA-1:cds;Parent=Msa1407740-mRNA-1
tig0023324 CDS 37524 37680 37524 ID=Msa1407740-mRNA-1:cds;Parent=Msa1407740-mRNA-1
tig0023324 CDS 37255 37368 37255 ID=Msa1407740-mRNA-1:cds;Parent=Msa1407740-mRNA-1
tig0023324 CDS 36595 36920 36595 ID=Msa1407740-mRNA-1:cds;Parent=Msa1407740-mRNA-1
tig0023324 CDS 35577 36143 35577 ID=Msa1407740-mRNA-1:cds;Parent=Msa1407740-mRNA-1
tig0023324 CDS 34630 35330 34630 ID=Msa1407740-mRNA-1:cds;Parent=Msa1407740-mRNA-1
tig0023324 CDS 33530 34085 33530 ID=Msa1407740-mRNA-1:cds;Parent=Msa1407740-mRNA-1
tig0023324 CDS 33089 33415 33089 ID=Msa1407740-mRNA-1:cds;Parent=Msa1407740-mRNA-1
tig0023324 CDS 32615 32725 32615 ID=Msa1407740-mRNA-1:cds;Parent=Msa1407740-mRNA-1
tig0023324 three_prime_UTR 32402 32614 32402 ID=Msa1407740-mRNA-1:three_prime_utr;Parent=Msa1407740-mRNA-1
Gene Sequence

>Msa1407740

ATGTCTAATTCATATACTATGATTGCCACAACAGATATTGAAGAAATTTTATTACAAGCACAATATCGATGGCTACGTCCGGCTGAAATTTGCCAAATTCTCACTAACTATAACAGCTTTCAGATTTCTTCGCAACCTTCGTATATGCCTCCAAGTATGATTAATTCTGATTCTAATTTCTTAATAGCTCTTTTTGTTTCGAGATCTTTTTATAAGCAGAATGCTTTTATGAATTGTGATGTTTTGGATTGGTTGACAATAGGTGGTTCACTTTTCTTGTTTGATCGAAAGGTGACGAGATACTTTAGAAAAGATGGACATAACTGGAGGAAGAAAAAAGATGGAAAAACTGTTAGGGAAGCTCATGAGAGACTCAAGGCTGGAAGTGTGGAAGTATTGCACTGCTACTACGCCCATGGAGAACAAAATGACAATTTTCAAAGACGAACTTACTGGATGCTTGAGGAGGAACTCTCACACATCGTTCTAGTCCATTATCGGGAAGTGAAGGGAACCAAAGCAACTTTAATGCATGCCAAAGAAAATGAAGAATCTAATCCTTGTGATCAACAAACATACAAAGTTATGCCTAACACAGAGGCAGAGACTTCTTTACCGTCTAGCATTAACAGTGGTCAAGCATCAGAATATGAAGAAGCTGAATCAGCATTCAATAGCCATGCAAATTCGGATTTCTACTCTTTTCTTGAGCTGCAACAGCCTGCTGTTCAAAAGATTAAAGCTCAACTCCCTTATTCTAACTGTCCCCTATCTCTCAAAGATGATCAGGAAAGGTTGCCTGTCATTCCTCAGGTGGATGATATCTTACTCAGTCAAGCTAATGAAACCAAATACATTAACAATGTTGGATTGACATGTGAACTCTCAAAAGTTCTTGGCTTTTCATCATGGCAAGATATCTTAGAAAATAAGGCTGGAAGTCATAATGTGCCTTTTCAGTCTTTTCCTGAAACAGAACCCAATAACACGGGAATCAATAGTACTTCTCAAGGATATGAGACAATGGGGCAACATTTAACCATCAGCATTACTAAACAGTATGATAATAGAAGTTTTATACCAGCTGAAGCTGAAGGAAATTGGCAGGCCTCTGGTTTTAATTCTTTAAGCGCATCCACATGGCCCAAAGATAGTGCCTATTCAGGCTCATCGTGTGAGGTTAGTTATAGTGACAATGAGCAGGAAGTTAATGAAGTTGATTTTCAACAATCCTTGGAACAGTTCCTTCTTCATACACACCAACAAAACAAGGTTCTTATGCAAAATAGCCCTCATGAAATACTTTTAAAAGCAGAAGACAAGTTAAAATCAGATCTAGGGATCGATAAAAGCCTAGTTGGAATAGAAGACACTCATTTCACTTCAAAGAAGACTCTATTAAGTGTATCTGTGGCAGAAGAGGGCCTGAAGAAGCTCGACAGTTTCAACCGATGGATGAGTAAAGAACTAGGCGATGTCGAAGAATCAAGCAAGCATTCCCCTTCTAGTGCTTATTGGGATACAGTTGAAAGCGAAAATGGTGTTGACAGTACAACTATTCCTTCCCAGGTGCACTTGGAGAACTATGTACTGGATCCATCTATTTGCTATGATCAGCTTTTTAGCATCATTGATTATTCCCCAAGTTGGGCATTTGAAGACTCGGAAATTAAGGTTCTCATTTCAGGACGATTCTTAAAGAGTCAACATGAAGCAGAAGATTGTAAATGGTCATGCATGTTCGGCGAGATAGAAGTGCCGGCAGAGATAACCAGGAATAGTGTTCTCTGTTGTTATACACCTCAACACAAGGCTGGACGGGTTCCTTTCTACGTAACATGTTCTAATAGGTTAGCATGTAGTGAAGTGCGCGAATTCGATTTCCGAGTCAATTATACTCAAGAAGTCAACACTGCCGGTGAGATCAGAAGCAGCAATACTTATGATACTTTTAATAAACGATTTGGAGAATTGTTGTCCCAAGAGCATGACTTCCCTCGGGATTTAGATTCGATTAGTGTGAATGAGAAATCTCAACTGAGAAGTAAAATCAGTTCTTTGCTTGGTAGGAAGGACGATGAATGGGACGAACTACTTAAATTTACTCTAGACAAAGATTTTTCTCCAGAACTTGTACATGATCAACTGCTTCAAAATCTTCTAAAAGATAAACTACATGCATGGCTCCTTCAGAAAAAAACTGAAGATGGGAAAGGCCCAAATGTATTAGATGAAGGTGGCCAAGGTGTGCTTCATTTTGCAGCCTTTCTTGGCTACGATTGGGCCTTAGAACCAACAATTGTTGCTGGTGTGAATGTGAACTTTCGCGATGTAAATGGATGGACTGCTCTTCATTGGGCGGCGTTTTGTGGCAGGGAGAGGACAGTTGCTTCCCTCATATCTCTTGGGGCAGCACCAGGAGCACTTACTGATCCATGCCCACAACATCCTTCTGGTAGAACACCAGCCGACCTAGCTTCTGCAAATGGACACAAAGGAATTGCTGGTTATCTTGCAGAATCTTTCTTAAGCTCACAACTCAAGTCTCTTGATTTGAAAAGAAACATGAGAGAAACCGTTGGAACAAAACAAAGAGTCCGAGAACAAAACAATGAGTGCTTCTCACATGAACCTTCAATGAAAGATTCACTGGCTGCAGTGTGCAATGCAACTCAAGCTGCTGCTCGTATTCATCAAGTTTTTAGAGTGCAATCATTCCAGAGAAAACAACAAAAGGAATACGATGGTGACAAATTTGGAATATCTGATGAACGTGCTCTTTCACTAATATCAGTGAATGCGAAGTCACACAAGTCTGGACTACGCAATGAGCCTGTTCATGTTGCTGCAACACGTATTCAGAACAAGTTTCGCAGTTGGAAGGGCAGAAAAGATTTTTTGATTATTCGACAGCGAATTGTAAAAATTCAGGCTCACGTGAGAGGTCACCAGGTTAGGAAAAACTATGGGAAGATAATTTGGTCGGTTGGGATTGTGGAAAAGGTTATATTACGTTGGCGTCGAAAAGGTAGTGGTTTGCGTGGATTCAAATCAGAGGCTATTTCTGAGGGAACTATGGTACAAGGTGTATCATCTTCCACTGAGGATGACTACGATTTTTTGAAAGAAGGCAGGAAGCAAACTGAGAAAAGGTTGGAGAAAGCCCTTGCTAGAGTGAAGTCAATGGCTCAATATCCAGATGCAAGAGACCAATACCACAGGTTGTTGAATGTTGTAACTGAGATACAAGAAAATCAGGTAAAGCAAGATCGAAATTTTATCAATTCAGAAGAAACAAGACAATTCAATAACCTCGTTGATCTTGAAGCATTGTTGGACGAAGATACTTTCATGCCTACAGCCACTTAG
Protein sequence

>Msa1407740

MSNSYTMIATTDIEEILLQAQYRWLRPAEICQILTNYNSFQISSQPSYMPPSMINSDSNFLIALFVSRSFYKQNAFMNCDVLDWLTIGGSLFLFDRKVTRYFRKDGHNWRKKKDGKTVREAHERLKAGSVEVLHCYYAHGEQNDNFQRRTYWMLEEELSHIVLVHYREVKGTKATLMHAKENEESNPCDQQTYKVMPNTEAETSLPSSINSGQASEYEEAESAFNSHANSDFYSFLELQQPAVQKIKAQLPYSNCPLSLKDDQERLPVIPQVDDILLSQANETKYINNVGLTCELSKVLGFSSWQDILENKAGSHNVPFQSFPETEPNNTGINSTSQGYETMGQHLTISITKQYDNRSFIPAEAEGNWQASGFNSLSASTWPKDSAYSGSSCEVSYSDNEQEVNEVDFQQSLEQFLLHTHQQNKVLMQNSPHEILLKAEDKLKSDLGIDKSLVGIEDTHFTSKKTLLSVSVAEEGLKKLDSFNRWMSKELGDVEESSKHSPSSAYWDTVESENGVDSTTIPSQVHLENYVLDPSICYDQLFSIIDYSPSWAFEDSEIKVLISGRFLKSQHEAEDCKWSCMFGEIEVPAEITRNSVLCCYTPQHKAGRVPFYVTCSNRLACSEVREFDFRVNYTQEVNTAGEIRSSNTYDTFNKRFGELLSQEHDFPRDLDSISVNEKSQLRSKISSLLGRKDDEWDELLKFTLDKDFSPELVHDQLLQNLLKDKLHAWLLQKKTEDGKGPNVLDEGGQGVLHFAAFLGYDWALEPTIVAGVNVNFRDVNGWTALHWAAFCGRERTVASLISLGAAPGALTDPCPQHPSGRTPADLASANGHKGIAGYLAESFLSSQLKSLDLKRNMRETVGTKQRVREQNNECFSHEPSMKDSLAAVCNATQAAARIHQVFRVQSFQRKQQKEYDGDKFGISDERALSLISVNAKSHKSGLRNEPVHVAATRIQNKFRSWKGRKDFLIIRQRIVKIQAHVRGHQVRKNYGKIIWSVGIVEKVILRWRRKGSGLRGFKSEAISEGTMVQGVSSSTEDDYDFLKEGRKQTEKRLEKALARVKSMAQYPDARDQYHRLLNVVTEIQENQVKQDRNFINSEETRQFNNLVDLEALLDEDTFMPTAT*