AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1331710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331710 MtrunA17_Chr4g0061981 97.452 157 0 1 1 157 1 153 9.98e-107 301
Msa1331710 MtrunA17_Chr4g0063571 34.483 116 75 1 21 136 4 118 1.69e-14 66.2
Msa1331710 MtrunA17_Chr2g0307081 34.821 112 72 1 25 136 8 118 1.63e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1331710 AT5G08180.2 68.153 157 49 1 1 157 1 156 5.11e-76 224
Msa1331710 AT5G08180.1 68.153 157 49 1 1 157 1 156 5.11e-76 224
Msa1331710 AT4G12600.1 34.188 117 76 1 20 136 3 118 5.30e-13 62.4
Msa1331710 AT5G20160.1 35.714 112 71 1 25 136 8 118 5.41e-13 62.4
Msa1331710 AT4G22380.1 34.821 112 72 1 25 136 8 118 9.29e-13 62.0

Find 44 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTGAAAGATTTGGGAATT+AGG 0.181028 8_4:-51266364 None:intergenic
GCTACAATGGATTAACATAT+TGG 0.284643 8_4:+51268502 Msa1331710:three_prime_UTR
AGTATAAGGCGAGGTCAAAA+AGG 0.296737 8_4:+51267316 Msa1331710:CDS
AAGCAACACTCTTTATAATA+AGG 0.316304 8_4:-51268574 None:intergenic
GTTGAAAGATTTGGGAATTA+GGG 0.328456 8_4:-51266363 None:intergenic
CCCATTGCAAAACCTCTTGC+TGG 0.348880 8_4:+51266479 Msa1331710:CDS
GTGTGCTTCGTTGAAAGATT+TGG 0.364745 8_4:-51266372 None:intergenic
TGAGATAGTTCACCCTTTGA+AGG 0.372203 8_4:-51268369 None:intergenic
TGTGCTTCGTTGAAAGATTT+GGG 0.394099 8_4:-51266371 None:intergenic
AGCACACACACAGAGAGAAA+TGG 0.394908 8_4:+51266388 Msa1331710:exon
AGGAGGTGGTTAAAAGTATA+AGG 0.394940 8_4:+51267302 Msa1331710:CDS
GTGCATAAAGAGAGGAGTTA+AGG 0.402782 8_4:+51267282 Msa1331710:CDS
TCCTTATCCTCGCATAAAAT+CGG 0.425786 8_4:-51267574 None:intergenic
TGCAGAGTGTGTATTATAGC+TGG 0.425932 8_4:+51267517 Msa1331710:intron
TAGTTCACCCTTTGAAGGCT+TGG 0.444404 8_4:-51268364 None:intergenic
ACATGAGTGATGACATCAAT+AGG 0.449731 8_4:-51267550 None:intergenic
GCACACACACAGAGAGAAAT+GGG 0.454340 8_4:+51266389 Msa1331710:exon
GTCCAGGACCTTGCAACGGC+AGG 0.468819 8_4:+51268303 Msa1331710:intron
TTAGATGAGACATACACATA+TGG 0.472823 8_4:-51267601 None:intergenic
CGACAGTGAAGGTGAGAAAT+CGG 0.483487 8_4:+51266415 Msa1331710:CDS
GTGATGACCAAGCCTTCAAA+GGG 0.500756 8_4:+51268357 Msa1331710:CDS
TCGTTGCTCCTGCCGTTGCA+AGG 0.501816 8_4:-51268311 None:intergenic
AGTGATGACCAAGCCTTCAA+AGG 0.525648 8_4:+51268356 Msa1331710:CDS
ACACTCAAGCTTGTTAAAAG+AGG 0.527156 8_4:+51266521 Msa1331710:CDS
AAAGAGAGGAGTTAAGGAGG+TGG 0.543156 8_4:+51267288 Msa1331710:CDS
CGGTGCAGAGGGAGAAGGAG+AGG 0.549279 8_4:+51266435 Msa1331710:CDS
CATAAAGAGAGGAGTTAAGG+AGG 0.557458 8_4:+51267285 Msa1331710:CDS
GAAAGCTTCTTTCCAGCAAG+AGG 0.560382 8_4:-51266491 None:intergenic
GCAGAGTGTGTATTATAGCT+GGG 0.568819 8_4:+51267518 Msa1331710:intron
ATCACTAAAACACAACAAGT+TGG 0.571248 8_4:-51268339 None:intergenic
GAAGGAGAGGAAGAAGATGC+AGG 0.571568 8_4:+51266448 Msa1331710:CDS
GAAATCGGTGCAGAGGGAGA+AGG 0.585599 8_4:+51266430 Msa1331710:CDS
AAGGTGAGAAATCGGTGCAG+AGG 0.589190 8_4:+51266423 Msa1331710:CDS
AGGTGAGAAATCGGTGCAGA+GGG 0.594395 8_4:+51266424 Msa1331710:CDS
TCTGAGCAATAATGTGGGTA+GGG 0.614916 8_4:+51268634 Msa1331710:three_prime_UTR
TTTGTGTCTGAGCAATAATG+TGG 0.615704 8_4:+51268628 Msa1331710:three_prime_UTR
AAAGGGTGAACTATCTCAAG+AGG 0.620179 8_4:+51268374 Msa1331710:CDS
GAAAACAAGTGCATAAAGAG+AGG 0.625540 8_4:+51267274 Msa1331710:CDS
ATTTGTCCAGGACCTTGCAA+CGG 0.636321 8_4:+51268299 Msa1331710:intron
CAACGGCAGGAGCAACGAAG+AGG 0.638950 8_4:+51268316 Msa1331710:CDS
GTCTGAGCAATAATGTGGGT+AGG 0.653159 8_4:+51268633 Msa1331710:three_prime_UTR
GAAATGGGAAGCGACAGTGA+AGG 0.681973 8_4:+51266404 Msa1331710:exon
GTGGTTAAAAGTATAAGGCG+AGG 0.693539 8_4:+51267307 Msa1331710:CDS
TTGTGTCTGAGCAATAATGT+GGG 0.722883 8_4:+51268629 Msa1331710:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAGCTATAAACTATAT+TGG + chr8_4:51266894-51266913 Msa1331710:intron 15.0%
!! TTCCAAAATAAAAGAAAAAA+CGG - chr8_4:51267123-51267142 None:intergenic 15.0%
!!! TTTTTTCTTTTATTTTGGAA+TGG + chr8_4:51267123-51267142 Msa1331710:intron 15.0%
!! ACAATTGAAACATAAAAAAT+GGG - chr8_4:51267456-51267475 None:intergenic 15.0%
!! TTATAAGCTATAAACTATAT+TGG + chr8_4:51266894-51266913 Msa1331710:intron 15.0%
!! TTCCAAAATAAAAGAAAAAA+CGG - chr8_4:51267123-51267142 None:intergenic 15.0%
!!! TTTTTTCTTTTATTTTGGAA+TGG + chr8_4:51267123-51267142 Msa1331710:intron 15.0%
!! ACAATTGAAACATAAAAAAT+GGG - chr8_4:51267456-51267475 None:intergenic 15.0%
!!! TAATGAAAATCGTTAATTTG+TGG + chr8_4:51266581-51266600 Msa1331710:intron 20.0%
!! ATAGCTTATAAAAACAACTT+AGG - chr8_4:51266885-51266904 None:intergenic 20.0%
!! ATTCATAACATAACATTCTT+GGG - chr8_4:51267035-51267054 None:intergenic 20.0%
!!! GTTGATTCTGTAATTTAAAA+AGG + chr8_4:51267159-51267178 Msa1331710:intron 20.0%
!! TTACATAAATCTTTGTCTTA+TGG + chr8_4:51267216-51267235 Msa1331710:intron 20.0%
!! TACATAAATCTTTGTCTTAT+GGG + chr8_4:51267217-51267236 Msa1331710:intron 20.0%
!! CACAATTGAAACATAAAAAA+TGG - chr8_4:51267457-51267476 None:intergenic 20.0%
!!! CATTTTTTATGTTTCAATTG+TGG + chr8_4:51267455-51267474 Msa1331710:intron 20.0%
!! TTCCATTCAAATATGTTATA+TGG - chr8_4:51267899-51267918 None:intergenic 20.0%
!! CTATTGTATTCATAATATAC+AGG - chr8_4:51268039-51268058 None:intergenic 20.0%
!! GAATTGTTGATATATTATGT+AGG - chr8_4:51268111-51268130 None:intergenic 20.0%
!!! TTTCAGTTTCGTTTTAAATA+TGG + chr8_4:51268143-51268162 Msa1331710:intron 20.0%
!!! AAATGTATTTGTACTGTTTT+TGG + chr8_4:51268480-51268499 Msa1331710:three_prime_UTR 20.0%
!!! TAATGAAAATCGTTAATTTG+TGG + chr8_4:51266581-51266600 Msa1331710:intron 20.0%
!! ATAGCTTATAAAAACAACTT+AGG - chr8_4:51266885-51266904 None:intergenic 20.0%
!! ATTCATAACATAACATTCTT+GGG - chr8_4:51267035-51267054 None:intergenic 20.0%
!!! GTTGATTCTGTAATTTAAAA+AGG + chr8_4:51267159-51267178 Msa1331710:intron 20.0%
!! TTACATAAATCTTTGTCTTA+TGG + chr8_4:51267216-51267235 Msa1331710:intron 20.0%
!! TACATAAATCTTTGTCTTAT+GGG + chr8_4:51267217-51267236 Msa1331710:intron 20.0%
!! CACAATTGAAACATAAAAAA+TGG - chr8_4:51267457-51267476 None:intergenic 20.0%
!!! CATTTTTTATGTTTCAATTG+TGG + chr8_4:51267455-51267474 Msa1331710:intron 20.0%
!! TTCCATTCAAATATGTTATA+TGG - chr8_4:51267899-51267918 None:intergenic 20.0%
!! CTATTGTATTCATAATATAC+AGG - chr8_4:51268039-51268058 None:intergenic 20.0%
!! GAATTGTTGATATATTATGT+AGG - chr8_4:51268111-51268130 None:intergenic 20.0%
!!! TTTCAGTTTCGTTTTAAATA+TGG + chr8_4:51268143-51268162 Msa1331710:intron 20.0%
!!! AAATGTATTTGTACTGTTTT+TGG + chr8_4:51268480-51268499 Msa1331710:three_prime_UTR 20.0%
!!! CTTCAAAAATGAACTTGTTA+TGG + chr8_4:51266726-51266745 Msa1331710:intron 25.0%
!!! ATGAACTTGTTATGGAATTA+AGG + chr8_4:51266734-51266753 Msa1331710:intron 25.0%
!!! TGAACTTGTTATGGAATTAA+GGG + chr8_4:51266735-51266754 Msa1331710:intron 25.0%
! AATAAGTTGTTTATCCAAAC+AGG - chr8_4:51266761-51266780 None:intergenic 25.0%
! TTCATAACATAACATTCTTG+GGG - chr8_4:51267034-51267053 None:intergenic 25.0%
! GATTCATAACATAACATTCT+TGG - chr8_4:51267036-51267055 None:intergenic 25.0%
!!! TGCCGTTTTTTCTTTTATTT+TGG + chr8_4:51267118-51267137 Msa1331710:intron 25.0%
!! CTTATTCTAAAGAGAGATTA+GGG - chr8_4:51267701-51267720 None:intergenic 25.0%
!! TCTTATTCTAAAGAGAGATT+AGG - chr8_4:51267702-51267721 None:intergenic 25.0%
! TCATAAATAACCAAAAGTTG+AGG + chr8_4:51267775-51267794 Msa1331710:intron 25.0%
! GTCCATATAACATATTTGAA+TGG + chr8_4:51267894-51267913 Msa1331710:intron 25.0%
! ATATGGTATTAAGAGAAACA+TGG + chr8_4:51268160-51268179 Msa1331710:intron 25.0%
!! TTTCAAAGTACTAGAGTAAT+TGG - chr8_4:51268255-51268274 None:intergenic 25.0%
! AAGCAACACTCTTTATAATA+AGG - chr8_4:51268577-51268596 None:intergenic 25.0%
!!! CTTCAAAAATGAACTTGTTA+TGG + chr8_4:51266726-51266745 Msa1331710:intron 25.0%
!!! ATGAACTTGTTATGGAATTA+AGG + chr8_4:51266734-51266753 Msa1331710:intron 25.0%
!!! TGAACTTGTTATGGAATTAA+GGG + chr8_4:51266735-51266754 Msa1331710:intron 25.0%
! AATAAGTTGTTTATCCAAAC+AGG - chr8_4:51266761-51266780 None:intergenic 25.0%
! TTCATAACATAACATTCTTG+GGG - chr8_4:51267034-51267053 None:intergenic 25.0%
! GATTCATAACATAACATTCT+TGG - chr8_4:51267036-51267055 None:intergenic 25.0%
!!! TGCCGTTTTTTCTTTTATTT+TGG + chr8_4:51267118-51267137 Msa1331710:intron 25.0%
!! CTTATTCTAAAGAGAGATTA+GGG - chr8_4:51267701-51267720 None:intergenic 25.0%
!! TCTTATTCTAAAGAGAGATT+AGG - chr8_4:51267702-51267721 None:intergenic 25.0%
! TCATAAATAACCAAAAGTTG+AGG + chr8_4:51267775-51267794 Msa1331710:intron 25.0%
! GTCCATATAACATATTTGAA+TGG + chr8_4:51267894-51267913 Msa1331710:intron 25.0%
! ATATGGTATTAAGAGAAACA+TGG + chr8_4:51268160-51268179 Msa1331710:intron 25.0%
!! TTTCAAAGTACTAGAGTAAT+TGG - chr8_4:51268255-51268274 None:intergenic 25.0%
! AAGCAACACTCTTTATAATA+AGG - chr8_4:51268577-51268596 None:intergenic 25.0%
GTTGAAAGATTTGGGAATTA+GGG - chr8_4:51266366-51266385 None:intergenic 30.0%
ATGGTAAAAAGACAGCAAAA+AGG - chr8_4:51267088-51267107 None:intergenic 30.0%
! GCTTGAATGTTTTGTCAATT+TGG + chr8_4:51267192-51267211 Msa1331710:intron 30.0%
AAACATTAGATTGCTCACAA+AGG + chr8_4:51267353-51267372 Msa1331710:intron 30.0%
AACATTAGATTGCTCACAAA+GGG + chr8_4:51267354-51267373 Msa1331710:intron 30.0%
TCATATCTTCCTTGACAAAA+TGG + chr8_4:51267414-51267433 Msa1331710:intron 30.0%
! ATTGAGTAACCATTTTGTCA+AGG - chr8_4:51267426-51267445 None:intergenic 30.0%
GAGAAGAAGGCAAAAAATAA+GGG - chr8_4:51267495-51267514 None:intergenic 30.0%
TGAGAAGAAGGCAAAAAATA+AGG - chr8_4:51267496-51267515 None:intergenic 30.0%
TTAGATGAGACATACACATA+TGG - chr8_4:51267604-51267623 None:intergenic 30.0%
TATGACATCAAATTAACCTC+AGG - chr8_4:51267760-51267779 None:intergenic 30.0%
! ATAACACAAATTGTGTTGAC+AGG + chr8_4:51267865-51267884 Msa1331710:intron 30.0%
! GAATGTATGCTTTTCTATAC+TGG + chr8_4:51267916-51267935 Msa1331710:intron 30.0%
AAATCTGCTATGCAATCATT+TGG + chr8_4:51268205-51268224 Msa1331710:intron 30.0%
!! AATTTCTGAGATATTTGTCC+AGG + chr8_4:51268287-51268306 Msa1331710:intron 30.0%
ATCACTAAAACACAACAAGT+TGG - chr8_4:51268342-51268361 None:intergenic 30.0%
!! GCTACAATGGATTAACATAT+TGG + chr8_4:51268502-51268521 Msa1331710:three_prime_UTR 30.0%
!! CTTGCAATCATTTTGATCTA+TGG + chr8_4:51268533-51268552 Msa1331710:three_prime_UTR 30.0%
GTTGAAAGATTTGGGAATTA+GGG - chr8_4:51266366-51266385 None:intergenic 30.0%
ATGGTAAAAAGACAGCAAAA+AGG - chr8_4:51267088-51267107 None:intergenic 30.0%
! GCTTGAATGTTTTGTCAATT+TGG + chr8_4:51267192-51267211 Msa1331710:intron 30.0%
AAACATTAGATTGCTCACAA+AGG + chr8_4:51267353-51267372 Msa1331710:intron 30.0%
AACATTAGATTGCTCACAAA+GGG + chr8_4:51267354-51267373 Msa1331710:intron 30.0%
TCATATCTTCCTTGACAAAA+TGG + chr8_4:51267414-51267433 Msa1331710:intron 30.0%
! ATTGAGTAACCATTTTGTCA+AGG - chr8_4:51267426-51267445 None:intergenic 30.0%
GAGAAGAAGGCAAAAAATAA+GGG - chr8_4:51267495-51267514 None:intergenic 30.0%
TGAGAAGAAGGCAAAAAATA+AGG - chr8_4:51267496-51267515 None:intergenic 30.0%
TTAGATGAGACATACACATA+TGG - chr8_4:51267604-51267623 None:intergenic 30.0%
TATGACATCAAATTAACCTC+AGG - chr8_4:51267760-51267779 None:intergenic 30.0%
! ATAACACAAATTGTGTTGAC+AGG + chr8_4:51267865-51267884 Msa1331710:intron 30.0%
! GAATGTATGCTTTTCTATAC+TGG + chr8_4:51267916-51267935 Msa1331710:intron 30.0%
AAATCTGCTATGCAATCATT+TGG + chr8_4:51268205-51268224 Msa1331710:intron 30.0%
!! AATTTCTGAGATATTTGTCC+AGG + chr8_4:51268287-51268306 Msa1331710:intron 30.0%
ATCACTAAAACACAACAAGT+TGG - chr8_4:51268342-51268361 None:intergenic 30.0%
!! GCTACAATGGATTAACATAT+TGG + chr8_4:51268502-51268521 Msa1331710:three_prime_UTR 30.0%
!! CTTGCAATCATTTTGATCTA+TGG + chr8_4:51268533-51268552 Msa1331710:three_prime_UTR 30.0%
CGTTGAAAGATTTGGGAATT+AGG - chr8_4:51266367-51266386 None:intergenic 35.0%
TGTGCTTCGTTGAAAGATTT+GGG - chr8_4:51266374-51266393 None:intergenic 35.0%
! AACAAGCTTGAGTGTTTTCT+TGG - chr8_4:51266516-51266535 None:intergenic 35.0%
!! ACACTCAAGCTTGTTAAAAG+AGG + chr8_4:51266521-51266540 Msa1331710:CDS 35.0%
TCTAAGAATTGCAGTGTTTC+TGG + chr8_4:51266606-51266625 Msa1331710:intron 35.0%
CTAAGAATTGCAGTGTTTCT+GGG + chr8_4:51266607-51266626 Msa1331710:intron 35.0%
GGAGAGTTCTTGAAAATAAG+TGG + chr8_4:51266915-51266934 Msa1331710:intron 35.0%
TGAAATAAGCCAATCCAAAC+AGG + chr8_4:51267008-51267027 Msa1331710:intron 35.0%
AAAACGGCAGCAAATTTGTA+TGG - chr8_4:51267107-51267126 None:intergenic 35.0%
GAAAACAAGTGCATAAAGAG+AGG + chr8_4:51267274-51267293 Msa1331710:CDS 35.0%
! AGGAGGTGGTTAAAAGTATA+AGG + chr8_4:51267302-51267321 Msa1331710:CDS 35.0%
ACATGAGTGATGACATCAAT+AGG - chr8_4:51267553-51267572 None:intergenic 35.0%
TCCTTATCCTCGCATAAAAT+CGG - chr8_4:51267577-51267596 None:intergenic 35.0%
TAAAGAGAGATTAGGGAAAC+AGG - chr8_4:51267694-51267713 None:intergenic 35.0%
TTTCTTACACATATAGCCTG+AGG + chr8_4:51267741-51267760 Msa1331710:intron 35.0%
AGCACTCAAGTTACAAAACA+AGG - chr8_4:51267826-51267845 None:intergenic 35.0%
TAATATACAGGTCTATGAGC+TGG - chr8_4:51268027-51268046 None:intergenic 35.0%
CACAGTTTATCGAGAAAGAA+AGG + chr8_4:51268065-51268084 Msa1331710:intron 35.0%
!!! TGTACTGTTTTTGGCTACAA+TGG + chr8_4:51268489-51268508 Msa1331710:three_prime_UTR 35.0%
TTTGTGTCTGAGCAATAATG+TGG + chr8_4:51268628-51268647 Msa1331710:three_prime_UTR 35.0%
TTGTGTCTGAGCAATAATGT+GGG + chr8_4:51268629-51268648 Msa1331710:three_prime_UTR 35.0%
CGTTGAAAGATTTGGGAATT+AGG - chr8_4:51266367-51266386 None:intergenic 35.0%
TGTGCTTCGTTGAAAGATTT+GGG - chr8_4:51266374-51266393 None:intergenic 35.0%
! AACAAGCTTGAGTGTTTTCT+TGG - chr8_4:51266516-51266535 None:intergenic 35.0%
!! ACACTCAAGCTTGTTAAAAG+AGG + chr8_4:51266521-51266540 Msa1331710:CDS 35.0%
TCTAAGAATTGCAGTGTTTC+TGG + chr8_4:51266606-51266625 Msa1331710:intron 35.0%
CTAAGAATTGCAGTGTTTCT+GGG + chr8_4:51266607-51266626 Msa1331710:intron 35.0%
GGAGAGTTCTTGAAAATAAG+TGG + chr8_4:51266915-51266934 Msa1331710:intron 35.0%
TGAAATAAGCCAATCCAAAC+AGG + chr8_4:51267008-51267027 Msa1331710:intron 35.0%
AAAACGGCAGCAAATTTGTA+TGG - chr8_4:51267107-51267126 None:intergenic 35.0%
GAAAACAAGTGCATAAAGAG+AGG + chr8_4:51267274-51267293 Msa1331710:CDS 35.0%
! AGGAGGTGGTTAAAAGTATA+AGG + chr8_4:51267302-51267321 Msa1331710:CDS 35.0%
ACATGAGTGATGACATCAAT+AGG - chr8_4:51267553-51267572 None:intergenic 35.0%
TCCTTATCCTCGCATAAAAT+CGG - chr8_4:51267577-51267596 None:intergenic 35.0%
TAAAGAGAGATTAGGGAAAC+AGG - chr8_4:51267694-51267713 None:intergenic 35.0%
TTTCTTACACATATAGCCTG+AGG + chr8_4:51267741-51267760 Msa1331710:intron 35.0%
AGCACTCAAGTTACAAAACA+AGG - chr8_4:51267826-51267845 None:intergenic 35.0%
TAATATACAGGTCTATGAGC+TGG - chr8_4:51268027-51268046 None:intergenic 35.0%
CACAGTTTATCGAGAAAGAA+AGG + chr8_4:51268065-51268084 Msa1331710:intron 35.0%
!!! TGTACTGTTTTTGGCTACAA+TGG + chr8_4:51268489-51268508 Msa1331710:three_prime_UTR 35.0%
TTTGTGTCTGAGCAATAATG+TGG + chr8_4:51268628-51268647 Msa1331710:three_prime_UTR 35.0%
TTGTGTCTGAGCAATAATGT+GGG + chr8_4:51268629-51268648 Msa1331710:three_prime_UTR 35.0%
GTGTGCTTCGTTGAAAGATT+TGG - chr8_4:51266375-51266394 None:intergenic 40.0%
!!! TTGCAGTGTTTCTGGGTTTT+TGG + chr8_4:51266614-51266633 Msa1331710:intron 40.0%
!!! TGTTTCTGGGTTTTTGGAGT+TGG + chr8_4:51266620-51266639 Msa1331710:intron 40.0%
TATGGAATTAAGGGCCTGTT+TGG + chr8_4:51266744-51266763 Msa1331710:intron 40.0%
GCTTATTTCAGCTGATCTAC+TGG - chr8_4:51266998-51267017 None:intergenic 40.0%
GTGCATAAAGAGAGGAGTTA+AGG + chr8_4:51267282-51267301 Msa1331710:CDS 40.0%
CATAAAGAGAGGAGTTAAGG+AGG + chr8_4:51267285-51267304 Msa1331710:CDS 40.0%
! GTGGTTAAAAGTATAAGGCG+AGG + chr8_4:51267307-51267326 Msa1331710:CDS 40.0%
AGTATAAGGCGAGGTCAAAA+AGG + chr8_4:51267316-51267335 Msa1331710:CDS 40.0%
GTATAAGGCGAGGTCAAAAA+GGG + chr8_4:51267317-51267336 Msa1331710:CDS 40.0%
TGCAGAGTGTGTATTATAGC+TGG + chr8_4:51267517-51267536 Msa1331710:intron 40.0%
GCAGAGTGTGTATTATAGCT+GGG + chr8_4:51267518-51267537 Msa1331710:intron 40.0%
! TCATGTTCCGATTTTATGCG+AGG + chr8_4:51267567-51267586 Msa1331710:CDS 40.0%
! TCCGATTTTATGCGAGGATA+AGG + chr8_4:51267573-51267592 Msa1331710:CDS 40.0%
ATCAAGATTCAGCGCAAAGT+TGG - chr8_4:51267639-51267658 None:intergenic 40.0%
AACTTTGCGCTGAATCTTGA+TGG + chr8_4:51267638-51267657 Msa1331710:intron 40.0%
! GAGGAAAAAGCCTCAACTTT+TGG - chr8_4:51267788-51267807 None:intergenic 40.0%
AAGGTGCAACATCATCAATG+AGG - chr8_4:51267807-51267826 None:intergenic 40.0%
! TTGAGTGCTTTTCCTTATGC+TGG + chr8_4:51267837-51267856 Msa1331710:intron 40.0%
GTGTTATGAATGCCAGCATA+AGG - chr8_4:51267852-51267871 None:intergenic 40.0%
TGAGATAGTTCACCCTTTGA+AGG - chr8_4:51268372-51268391 None:intergenic 40.0%
AAAGGGTGAACTATCTCAAG+AGG + chr8_4:51268374-51268393 Msa1331710:CDS 40.0%
TCTGAGCAATAATGTGGGTA+GGG + chr8_4:51268634-51268653 Msa1331710:three_prime_UTR 40.0%
GTGTGCTTCGTTGAAAGATT+TGG - chr8_4:51266375-51266394 None:intergenic 40.0%
!!! TTGCAGTGTTTCTGGGTTTT+TGG + chr8_4:51266614-51266633 Msa1331710:intron 40.0%
!!! TGTTTCTGGGTTTTTGGAGT+TGG + chr8_4:51266620-51266639 Msa1331710:intron 40.0%
TATGGAATTAAGGGCCTGTT+TGG + chr8_4:51266744-51266763 Msa1331710:intron 40.0%
GCTTATTTCAGCTGATCTAC+TGG - chr8_4:51266998-51267017 None:intergenic 40.0%
GTGCATAAAGAGAGGAGTTA+AGG + chr8_4:51267282-51267301 Msa1331710:CDS 40.0%
CATAAAGAGAGGAGTTAAGG+AGG + chr8_4:51267285-51267304 Msa1331710:CDS 40.0%
! GTGGTTAAAAGTATAAGGCG+AGG + chr8_4:51267307-51267326 Msa1331710:CDS 40.0%
AGTATAAGGCGAGGTCAAAA+AGG + chr8_4:51267316-51267335 Msa1331710:CDS 40.0%
GTATAAGGCGAGGTCAAAAA+GGG + chr8_4:51267317-51267336 Msa1331710:CDS 40.0%
TGCAGAGTGTGTATTATAGC+TGG + chr8_4:51267517-51267536 Msa1331710:intron 40.0%
GCAGAGTGTGTATTATAGCT+GGG + chr8_4:51267518-51267537 Msa1331710:intron 40.0%
! TCATGTTCCGATTTTATGCG+AGG + chr8_4:51267567-51267586 Msa1331710:CDS 40.0%
! TCCGATTTTATGCGAGGATA+AGG + chr8_4:51267573-51267592 Msa1331710:CDS 40.0%
ATCAAGATTCAGCGCAAAGT+TGG - chr8_4:51267639-51267658 None:intergenic 40.0%
AACTTTGCGCTGAATCTTGA+TGG + chr8_4:51267638-51267657 Msa1331710:intron 40.0%
! GAGGAAAAAGCCTCAACTTT+TGG - chr8_4:51267788-51267807 None:intergenic 40.0%
AAGGTGCAACATCATCAATG+AGG - chr8_4:51267807-51267826 None:intergenic 40.0%
! TTGAGTGCTTTTCCTTATGC+TGG + chr8_4:51267837-51267856 Msa1331710:intron 40.0%
GTGTTATGAATGCCAGCATA+AGG - chr8_4:51267852-51267871 None:intergenic 40.0%
TGAGATAGTTCACCCTTTGA+AGG - chr8_4:51268372-51268391 None:intergenic 40.0%
AAAGGGTGAACTATCTCAAG+AGG + chr8_4:51268374-51268393 Msa1331710:CDS 40.0%
TCTGAGCAATAATGTGGGTA+GGG + chr8_4:51268634-51268653 Msa1331710:three_prime_UTR 40.0%
AGCACACACACAGAGAGAAA+TGG + chr8_4:51266388-51266407 Msa1331710:exon 45.0%
GCACACACACAGAGAGAAAT+GGG + chr8_4:51266389-51266408 Msa1331710:exon 45.0%
CGACAGTGAAGGTGAGAAAT+CGG + chr8_4:51266415-51266434 Msa1331710:CDS 45.0%
! AGCAAGAGGTTTTGCAATGG+GGG - chr8_4:51266480-51266499 None:intergenic 45.0%
! CAGCAAGAGGTTTTGCAATG+GGG - chr8_4:51266481-51266500 None:intergenic 45.0%
! CCAGCAAGAGGTTTTGCAAT+GGG - chr8_4:51266482-51266501 None:intergenic 45.0%
! TCCAGCAAGAGGTTTTGCAA+TGG - chr8_4:51266483-51266502 None:intergenic 45.0%
GAAAGCTTCTTTCCAGCAAG+AGG - chr8_4:51266494-51266513 None:intergenic 45.0%
TAACATTCTTGGGGCCTGTT+TGG - chr8_4:51267025-51267044 None:intergenic 45.0%
AAAGAGAGGAGTTAAGGAGG+TGG + chr8_4:51267288-51267307 Msa1331710:CDS 45.0%
CACACTCTGCATTGAGAAGA+AGG - chr8_4:51267508-51267527 None:intergenic 45.0%
AGAGAGATTAGGGAAACAGG+CGG - chr8_4:51267691-51267710 None:intergenic 45.0%
ATTTGTCCAGGACCTTGCAA+CGG + chr8_4:51268299-51268318 Msa1331710:intron 45.0%
AGTGATGACCAAGCCTTCAA+AGG + chr8_4:51268356-51268375 Msa1331710:CDS 45.0%
GTGATGACCAAGCCTTCAAA+GGG + chr8_4:51268357-51268376 Msa1331710:CDS 45.0%
! TAGTTCACCCTTTGAAGGCT+TGG - chr8_4:51268367-51268386 None:intergenic 45.0%
GTCTGAGCAATAATGTGGGT+AGG + chr8_4:51268633-51268652 Msa1331710:three_prime_UTR 45.0%
AGCACACACACAGAGAGAAA+TGG + chr8_4:51266388-51266407 Msa1331710:exon 45.0%
GCACACACACAGAGAGAAAT+GGG + chr8_4:51266389-51266408 Msa1331710:exon 45.0%
CGACAGTGAAGGTGAGAAAT+CGG + chr8_4:51266415-51266434 Msa1331710:CDS 45.0%
! AGCAAGAGGTTTTGCAATGG+GGG - chr8_4:51266480-51266499 None:intergenic 45.0%
! CAGCAAGAGGTTTTGCAATG+GGG - chr8_4:51266481-51266500 None:intergenic 45.0%
! CCAGCAAGAGGTTTTGCAAT+GGG - chr8_4:51266482-51266501 None:intergenic 45.0%
! TCCAGCAAGAGGTTTTGCAA+TGG - chr8_4:51266483-51266502 None:intergenic 45.0%
GAAAGCTTCTTTCCAGCAAG+AGG - chr8_4:51266494-51266513 None:intergenic 45.0%
TAACATTCTTGGGGCCTGTT+TGG - chr8_4:51267025-51267044 None:intergenic 45.0%
AAAGAGAGGAGTTAAGGAGG+TGG + chr8_4:51267288-51267307 Msa1331710:CDS 45.0%
CACACTCTGCATTGAGAAGA+AGG - chr8_4:51267508-51267527 None:intergenic 45.0%
AGAGAGATTAGGGAAACAGG+CGG - chr8_4:51267691-51267710 None:intergenic 45.0%
ATTTGTCCAGGACCTTGCAA+CGG + chr8_4:51268299-51268318 Msa1331710:intron 45.0%
AGTGATGACCAAGCCTTCAA+AGG + chr8_4:51268356-51268375 Msa1331710:CDS 45.0%
GTGATGACCAAGCCTTCAAA+GGG + chr8_4:51268357-51268376 Msa1331710:CDS 45.0%
! TAGTTCACCCTTTGAAGGCT+TGG - chr8_4:51268367-51268386 None:intergenic 45.0%
GTCTGAGCAATAATGTGGGT+AGG + chr8_4:51268633-51268652 Msa1331710:three_prime_UTR 45.0%
GAAATGGGAAGCGACAGTGA+AGG + chr8_4:51266404-51266423 Msa1331710:exon 50.0%
AAGGTGAGAAATCGGTGCAG+AGG + chr8_4:51266423-51266442 Msa1331710:CDS 50.0%
AGGTGAGAAATCGGTGCAGA+GGG + chr8_4:51266424-51266443 Msa1331710:CDS 50.0%
GAAGGAGAGGAAGAAGATGC+AGG + chr8_4:51266448-51266467 Msa1331710:CDS 50.0%
CCCATTGCAAAACCTCTTGC+TGG + chr8_4:51266479-51266498 Msa1331710:CDS 50.0%
TTCTTGGGGCCTGTTTGGAT+TGG - chr8_4:51267020-51267039 None:intergenic 50.0%
GAAATGGGAAGCGACAGTGA+AGG + chr8_4:51266404-51266423 Msa1331710:exon 50.0%
AAGGTGAGAAATCGGTGCAG+AGG + chr8_4:51266423-51266442 Msa1331710:CDS 50.0%
AGGTGAGAAATCGGTGCAGA+GGG + chr8_4:51266424-51266443 Msa1331710:CDS 50.0%
GAAGGAGAGGAAGAAGATGC+AGG + chr8_4:51266448-51266467 Msa1331710:CDS 50.0%
CCCATTGCAAAACCTCTTGC+TGG + chr8_4:51266479-51266498 Msa1331710:CDS 50.0%
TTCTTGGGGCCTGTTTGGAT+TGG - chr8_4:51267020-51267039 None:intergenic 50.0%
GAAATCGGTGCAGAGGGAGA+AGG + chr8_4:51266430-51266449 Msa1331710:CDS 55.0%
GAAATCGGTGCAGAGGGAGA+AGG + chr8_4:51266430-51266449 Msa1331710:CDS 55.0%
TCGTTGCTCCTGCCGTTGCA+AGG - chr8_4:51268314-51268333 None:intergenic 60.0%
CAACGGCAGGAGCAACGAAG+AGG + chr8_4:51268316-51268335 Msa1331710:CDS 60.0%
TCGTTGCTCCTGCCGTTGCA+AGG - chr8_4:51268314-51268333 None:intergenic 60.0%
CAACGGCAGGAGCAACGAAG+AGG + chr8_4:51268316-51268335 Msa1331710:CDS 60.0%
CGGTGCAGAGGGAGAAGGAG+AGG + chr8_4:51266435-51266454 Msa1331710:CDS 65.0%
GTCCAGGACCTTGCAACGGC+AGG + chr8_4:51268303-51268322 Msa1331710:intron 65.0%
CTCCTGCCGTTGCAAGGTCC+TGG - chr8_4:51268308-51268327 None:intergenic 65.0%
CGGTGCAGAGGGAGAAGGAG+AGG + chr8_4:51266435-51266454 Msa1331710:CDS 65.0%
GTCCAGGACCTTGCAACGGC+AGG + chr8_4:51268303-51268322 Msa1331710:intron 65.0%
CTCCTGCCGTTGCAAGGTCC+TGG - chr8_4:51268308-51268327 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 51266357 51268671 51266357 ID=Msa1331710;Name=Msa1331710
chr8_4 mRNA 51266357 51268671 51266357 ID=Msa1331710-mRNA-1;Parent=Msa1331710;Name=Msa1331710-mRNA-1;_AED=0.02;_eAED=0.02;_QI=50|1|1|1|1|1|4|201|157
chr8_4 exon 51266357 51266542 51266357 ID=Msa1331710-mRNA-1:exon:15097;Parent=Msa1331710-mRNA-1
chr8_4 exon 51267269 51267338 51267269 ID=Msa1331710-mRNA-1:exon:15098;Parent=Msa1331710-mRNA-1
chr8_4 exon 51267522 51267627 51267522 ID=Msa1331710-mRNA-1:exon:15099;Parent=Msa1331710-mRNA-1
chr8_4 exon 51268309 51268671 51268309 ID=Msa1331710-mRNA-1:exon:15100;Parent=Msa1331710-mRNA-1
chr8_4 five_prime_UTR 51266357 51266406 51266357 ID=Msa1331710-mRNA-1:five_prime_utr;Parent=Msa1331710-mRNA-1
chr8_4 CDS 51266407 51266542 51266407 ID=Msa1331710-mRNA-1:cds;Parent=Msa1331710-mRNA-1
chr8_4 CDS 51267269 51267338 51267269 ID=Msa1331710-mRNA-1:cds;Parent=Msa1331710-mRNA-1
chr8_4 CDS 51267522 51267627 51267522 ID=Msa1331710-mRNA-1:cds;Parent=Msa1331710-mRNA-1
chr8_4 CDS 51268309 51268470 51268309 ID=Msa1331710-mRNA-1:cds;Parent=Msa1331710-mRNA-1
chr8_4 three_prime_UTR 51268471 51268671 51268471 ID=Msa1331710-mRNA-1:three_prime_utr;Parent=Msa1331710-mRNA-1
Gene Sequence

>Msa1331710

ATGGGAAGCGACAGTGAAGGTGAGAAATCGGTGCAGAGGGAGAAGGAGAGGAAGAAGATGCAGGCTCTAGCCCCCATTGCAAAACCTCTTGCTGGAAAGAAGCTTTCCAAGAAAACACTCAAGCTTGTTAAAAGAGCTGCTGAAAACAAGTGCATAAAGAGAGGAGTTAAGGAGGTGGTTAAAAGTATAAGGCGAGGTCAAAAAGGAGTGTGTATTATAGCTGGGAACATCTCGCCTATTGATGTCATCACTCATGTTCCGATTTTATGCGAGGATAAGGACATTCCATATGTGTATGTCTCATCTAAAGAAGACCTTGCAACGGCAGGAGCAACGAAGAGGCCAACTTGTTGTGTTTTAGTGATGACCAAGCCTTCAAAGGGTGAACTATCTCAAGAGGTACAAGAGAAACTAAAGTCAGAGTATGATCAAGTTGCATCAGAGTGTAGAGAGCTTCAGTCTACACTTTTTTGA

Protein sequence

>Msa1331710

MGSDSEGEKSVQREKERKKMQALAPIAKPLAGKKLSKKTLKLVKRAAENKCIKRGVKEVVKSIRRGQKGVCIIAGNISPIDVITHVPILCEDKDIPYVYVSSKEDLATAGATKRPTCCVLVMTKPSKGELSQEVQEKLKSEYDQVASECRELQSTLF*