AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1355540


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1355540 MtrunA17_Chr2g0328921 99.054 317 1 1 1 317 1 315 0.0 655
Msa1355540 MtrunA17_Chr7g0258011 66.319 288 72 5 44 313 67 347 6.07e-133 381
Msa1355540 MtrunA17_Chr1g0173841 63.036 303 78 5 44 317 93 390 7.27e-133 383
Msa1355540 MtrunA17_Chr8g0352011 64.931 288 80 8 44 314 55 338 7.40e-127 365
Msa1355540 MtrunA17_Chr5g0422571 68.349 218 55 4 84 298 56 262 4.20e-108 316
Msa1355540 MtrunA17_Chr2g0321291 60.166 241 85 3 73 307 67 302 3.43e-105 310
Msa1355540 MtrunA17_Chr4g0026521 59.289 253 92 4 60 310 48 291 7.58e-103 303
Msa1355540 MtrunA17_Chr1g0198651 78.261 161 32 1 135 292 99 259 1.73e-95 284
Msa1355540 MtrunA17_Chr4g0053341 60.870 230 75 4 60 289 11 225 7.14e-94 278
Msa1355540 MtrunA17_Chr1g0200421 39.597 149 80 5 145 286 245 390 1.30e-25 106
Msa1355540 MtrunA17_Chr2g0320341 34.615 156 95 3 138 286 231 386 5.17e-22 95.5
Msa1355540 MtrunA17_Chr4g0029521 35.971 139 80 4 145 282 61 191 1.51e-19 89.0
Msa1355540 MtrunA17_Chr7g0268961 34.868 152 81 7 139 282 33 174 1.65e-19 89.0
Msa1355540 MtrunA17_Chr8g0342421 30.151 199 116 8 97 282 26 214 2.42e-19 88.6
Msa1355540 MtrunA17_Chr1g0199101 33.939 165 89 8 128 282 45 199 2.94e-19 88.2
Msa1355540 MtrunA17_Chr8g0382121 38.849 139 78 6 153 286 127 263 3.10e-19 86.7
Msa1355540 MtrunA17_Chr1g0151351 35.211 142 81 5 143 282 62 194 3.38e-19 87.8
Msa1355540 MtrunA17_Chr1g0181381 34.247 146 87 4 138 282 54 191 4.74e-19 87.4
Msa1355540 MtrunA17_Chr1g0185121 35.211 142 81 5 143 282 61 193 8.18e-19 86.7
Msa1355540 MtrunA17_Chr1g0163001 32.927 164 92 6 128 282 41 195 8.53e-19 86.7
Msa1355540 MtrunA17_Chr1g0210821 33.562 146 87 5 138 282 60 196 1.13e-18 86.7
Msa1355540 MtrunA17_Chr2g0326381 34.247 146 87 4 138 282 48 185 1.19e-18 85.9
Msa1355540 MtrunA17_Chr1g0191991 34.337 166 89 7 127 282 60 215 1.45e-18 86.3
Msa1355540 MtrunA17_Chr1g0162971 35.252 139 80 5 145 282 64 193 1.46e-18 85.9
Msa1355540 MtrunA17_Chr7g0263941 34.694 147 84 6 138 282 50 186 3.89e-18 84.3
Msa1355540 MtrunA17_Chr2g0330171 32.877 146 88 4 138 282 62 198 5.35e-18 84.3
Msa1355540 MtrunA17_Chr8g0373541 33.813 139 82 4 145 282 56 185 7.48e-18 84.0
Msa1355540 MtrunA17_Chr3g0123941 35.152 165 93 7 153 313 139 293 8.82e-18 82.8
Msa1355540 MtrunA17_Chr2g0324991 33.803 142 84 5 138 277 8 141 8.93e-17 76.3
Msa1355540 MtrunA17_Chr4g0040571 31.507 146 90 4 138 282 55 191 1.28e-16 80.1
Msa1355540 MtrunA17_Chr3g0141431 30.723 166 97 5 123 278 15 172 1.98e-16 79.3
Msa1355540 MtrunA17_Chr8g0375521 30.986 142 87 5 143 281 48 181 7.38e-13 68.9
Msa1355540 MtrunA17_Chr6g0479921 28.966 145 93 4 143 285 50 186 3.32e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1355540 AT1G51220.1 61.801 322 95 8 6 310 27 337 3.07e-131 377
Msa1355540 AT3G57670.1 61.059 321 73 5 44 317 67 382 2.69e-127 369
Msa1355540 AT3G20880.1 61.462 301 82 7 36 310 118 410 9.49e-123 358
Msa1355540 AT1G13290.1 68.269 208 50 4 88 293 52 245 5.10e-102 301
Msa1355540 AT1G34790.1 68.159 201 63 1 90 289 83 283 3.99e-100 297
Msa1355540 AT1G08290.1 72.571 175 41 2 113 286 148 316 1.65e-94 284
Msa1355540 AT1G34370.3 37.209 172 89 6 131 286 7 175 2.45e-26 105
Msa1355540 AT1G34370.2 39.735 151 79 5 145 286 238 385 5.12e-26 108
Msa1355540 AT1G34370.1 39.735 151 79 5 145 286 238 385 5.12e-26 108
Msa1355540 AT5G22890.1 38.994 159 83 7 142 290 209 363 8.24e-23 97.8
Msa1355540 AT2G02080.1 31.088 193 113 6 101 282 23 206 1.46e-20 92.4
Msa1355540 AT2G02080.4 31.088 193 113 6 101 282 23 206 1.46e-20 92.4
Msa1355540 AT2G02080.5 31.088 193 113 6 101 282 23 206 1.46e-20 92.4
Msa1355540 AT2G02080.3 31.088 193 113 6 101 282 23 206 1.46e-20 92.4
Msa1355540 AT1G14580.1 34.320 169 93 5 123 282 46 205 5.56e-20 90.5
Msa1355540 AT1G14580.2 34.320 169 93 5 123 282 46 205 5.56e-20 90.5
Msa1355540 AT1G14580.3 34.320 169 93 5 123 282 60 219 6.76e-20 90.5
Msa1355540 AT1G55110.3 30.455 220 123 8 73 282 17 216 1.68e-19 89.0
Msa1355540 AT1G55110.1 30.455 220 123 8 73 282 17 216 1.68e-19 89.0
Msa1355540 AT1G55110.2 30.455 220 123 8 73 282 17 216 1.68e-19 89.0
Msa1355540 AT5G03150.1 35.252 139 81 4 145 282 76 206 2.28e-19 89.0
Msa1355540 AT5G66730.1 29.843 191 111 7 105 282 4 184 4.62e-19 87.8
Msa1355540 AT2G02070.2 34.247 146 86 4 138 282 68 204 7.95e-19 87.4
Msa1355540 AT2G02070.1 34.247 146 86 4 138 282 68 204 7.95e-19 87.4
Msa1355540 AT2G02080.6 34.783 138 80 4 146 282 1 129 3.28e-18 85.1
Msa1355540 AT2G02080.2 34.783 138 80 4 146 282 1 129 3.28e-18 85.1
Msa1355540 AT1G03840.2 33.562 146 87 5 138 282 55 191 1.69e-17 83.2
Msa1355540 AT1G03840.1 33.562 146 87 5 138 282 57 193 1.78e-17 83.2
Msa1355540 AT5G44160.1 33.094 139 83 4 145 282 60 189 2.21e-17 82.8
Msa1355540 AT3G45260.2 35.252 139 81 4 145 282 62 192 2.65e-17 82.4
Msa1355540 AT3G45260.1 35.252 139 81 4 145 282 62 192 2.65e-17 82.4
Msa1355540 AT5G44160.2 33.094 139 83 4 145 282 21 150 3.09e-17 82.4
Msa1355540 AT5G60470.2 34.074 135 81 3 145 278 67 194 3.24e-17 82.4
Msa1355540 AT5G60470.3 34.074 135 81 3 145 278 63 190 3.32e-17 82.4
Msa1355540 AT5G60470.1 34.074 135 81 3 145 278 58 185 3.56e-17 82.0
Msa1355540 AT3G50700.1 32.192 146 89 4 138 282 50 186 1.48e-16 80.5
Msa1355540 AT4G02670.1 32.192 146 90 3 138 282 69 206 1.94e-16 79.7
Msa1355540 AT4G02670.2 32.192 146 90 3 138 282 71 208 2.05e-16 79.7
Msa1355540 AT3G13810.5 32.192 146 90 4 138 282 81 218 3.89e-16 79.3
Msa1355540 AT3G13810.4 32.192 146 90 4 138 282 86 223 4.07e-16 79.3
Msa1355540 AT3G13810.1 32.192 146 90 4 138 282 86 223 4.07e-16 79.3
Msa1355540 AT3G13810.2 32.192 146 90 4 138 282 87 224 4.12e-16 79.3
Msa1355540 AT3G13810.3 32.192 146 90 4 138 282 73 210 4.17e-16 79.3
Msa1355540 AT3G13810.6 32.192 146 90 4 138 282 67 204 4.65e-16 79.0

Find 71 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGTTCCTCTTAGAGATTC+TGG 0.183675 tig0014834:-41028 None:intergenic
CCAATGACTTCAATGGTTAT+TGG 0.191789 tig0014834:+39050 Msa1355540:CDS
CAACACTTTCTACACATAAA+TGG 0.204972 tig0014834:-41187 None:intergenic
AAAGATCATATCAAGGCTTT+TGG 0.250816 tig0014834:+41313 Msa1355540:CDS
GGAAATGGACATAAAGCTTA+TGG 0.262958 tig0014834:+41334 Msa1355540:CDS
TATAGAATGGAGGGTTATTT+AGG 0.265203 tig0014834:-39078 None:intergenic
GTTACTGTGGCTTTGCATCT+AGG 0.282488 tig0014834:+39295 Msa1355540:CDS
AAAGATATGTTGTTACTATA+AGG 0.326372 tig0014834:-39106 None:intergenic
CATGTTGTTGTATCTATTGA+AGG 0.358064 tig0014834:-39503 None:intergenic
CATGATGATGATGAAAGATT+AGG 0.383112 tig0014834:-39008 None:intergenic
CATCATTTCCATGGAACTAA+AGG 0.398872 tig0014834:-39218 None:intergenic
TGATATGATGATAGTGGAAA+AGG 0.399989 tig0014834:-38971 None:intergenic
AACTTTGGTATTGTTGTTGT+GGG 0.402964 tig0014834:+41263 Msa1355540:CDS
CCAATAACCATTGAAGTCAT+TGG 0.409520 tig0014834:-39050 None:intergenic
TGCAAAGCATTTGCAGTAAG+AGG 0.436467 tig0014834:+41208 Msa1355540:CDS
AGAATCTTCCTTTAGTTCCA+TGG 0.448392 tig0014834:+39210 Msa1355540:CDS
CTTCATATTCATCATTTCCA+TGG 0.449667 tig0014834:-39227 None:intergenic
TTACTGTGGCTTTGCATCTA+GGG 0.458041 tig0014834:+39296 Msa1355540:CDS
AAACTTTGGTATTGTTGTTG+TGG 0.458245 tig0014834:+41262 Msa1355540:CDS
GTCCACCAAATAAAATTAGC+AGG 0.460803 tig0014834:+39404 Msa1355540:CDS
GATATATGATATGATGATAG+TGG 0.464498 tig0014834:-38977 None:intergenic
CCATGTTATTGTTGTGCACC+TGG 0.466023 tig0014834:+41073 Msa1355540:CDS
ATTGAAGTCATTGGAGAAGT+AGG 0.466777 tig0014834:-39041 None:intergenic
ACCCCTGCTCAGATTCTAAT+CGG 0.468227 tig0014834:+39445 Msa1355540:CDS
TCTCTTGGAGGTGGAGATGA+AGG 0.479256 tig0014834:-39139 None:intergenic
AAAGGAAGAGCTTCTCTTGG+AGG 0.486389 tig0014834:-39151 None:intergenic
AAATCAGATGAACTTATACT+TGG 0.487140 tig0014834:-39322 None:intergenic
AAAATATATAGATGCATATG+TGG 0.490811 tig0014834:+40978 Msa1355540:intron
AGCAAAGGAAGAGCTTCTCT+TGG 0.490887 tig0014834:-39154 None:intergenic
TACTTCTCCAATGACTTCAA+TGG 0.492298 tig0014834:+39043 Msa1355540:CDS
GATATGATGATAGTGGAAAA+GGG 0.496004 tig0014834:-38970 None:intergenic
TTGAAGGTCTTGAAACAAAG+AGG 0.499110 tig0014834:-39487 None:intergenic
AAATTAGCAGGGGTCAGTAT+TGG 0.506191 tig0014834:+39416 Msa1355540:CDS
TAAGGAAAATTATAGAATGG+AGG 0.508828 tig0014834:-39088 None:intergenic
GGACCGATTAGAATCTGAGC+AGG 0.523985 tig0014834:-39448 None:intergenic
CATGGAAATGATGAATATGA+AGG 0.524476 tig0014834:+39228 Msa1355540:CDS
GGAAGAGCTTCTCTTGGAGG+TGG 0.534319 tig0014834:-39148 None:intergenic
ATCACTTAAAGATCATATCA+AGG 0.535427 tig0014834:+41306 Msa1355540:CDS
ACATGGATCACAATATAGAA+AGG 0.537364 tig0014834:+41003 Msa1355540:CDS
CTATAAGGAAAATTATAGAA+TGG 0.547263 tig0014834:-39091 None:intergenic
CCAGGTGCACAACAATAACA+TGG 0.547993 tig0014834:-41073 None:intergenic
AAATATATAGATGCATATGT+GGG 0.547995 tig0014834:+40979 Msa1355540:intron
ATTAGAATCTGAGCAGGGGT+AGG 0.550899 tig0014834:-39442 None:intergenic
AAGGAAAATTATAGAATGGA+GGG 0.551334 tig0014834:-39087 None:intergenic
TTGAAGTCATTGGAGAAGTA+GGG 0.551474 tig0014834:-39040 None:intergenic
TCAATGTTGTTCTTGCATCC+AGG 0.558572 tig0014834:-41091 None:intergenic
AGAGGGCATGAAAACTGTGT+TGG 0.560971 tig0014834:-39469 None:intergenic
CATGGATCACAATATAGAAA+GGG 0.565142 tig0014834:+41004 Msa1355540:CDS
ACACATTACAAGAGAAAGCA+TGG 0.565234 tig0014834:+41157 Msa1355540:CDS
GGGAGTCTTAGCATTGCTGT+TGG 0.566939 tig0014834:-41052 None:intergenic
TTAGAATCTGAGCAGGGGTA+GGG 0.569587 tig0014834:-39441 None:intergenic
TAGATGCATATGTGGGGACA+TGG 0.582440 tig0014834:+40986 Msa1355540:intron
AAGGGACCAGAATCTCTAAG+AGG 0.583893 tig0014834:+41022 Msa1355540:CDS
TCCACCAAATAAAATTAGCA+GGG 0.584942 tig0014834:+39405 Msa1355540:CDS
ATATATACTCAGATATGTTG+TGG 0.592325 tig0014834:+41581 Msa1355540:three_prime_UTR
TGATGATGAAAGATTAGGAA+AGG 0.598905 tig0014834:-39003 None:intergenic
AGTGTTCTAAAATCTTTGAG+TGG 0.612744 tig0014834:-41130 None:intergenic
TGAAGGTCTTGAAACAAAGA+GGG 0.613383 tig0014834:-39486 None:intergenic
GTAGGGCTTAGGTTAAGCAA+AGG 0.619991 tig0014834:-39169 None:intergenic
GACCGATTAGAATCTGAGCA+GGG 0.623713 tig0014834:-39447 None:intergenic
CATTTGCAGTAAGAGGTGAC+TGG 0.624837 tig0014834:+41215 Msa1355540:CDS
AGATGATGATGCCGTTACTG+TGG 0.634808 tig0014834:+39282 Msa1355540:CDS
CAATAGATACAACAACATGC+AGG 0.643534 tig0014834:+39507 Msa1355540:CDS
TAGATGCAAAGCCACAGTAA+CGG 0.646015 tig0014834:-39293 None:intergenic
CTATAAAGACAAGACAGCTG+TGG 0.651073 tig0014834:+41463 Msa1355540:three_prime_UTR
CAAGATCAAGATGATGAACA+TGG 0.669051 tig0014834:+41376 Msa1355540:CDS
AATATATAGATGCATATGTG+GGG 0.677061 tig0014834:+40980 Msa1355540:intron
CCACCAAATAAAATTAGCAG+GGG 0.685279 tig0014834:+39406 Msa1355540:CDS
ACCGATTAGAATCTGAGCAG+GGG 0.690964 tig0014834:-39446 None:intergenic
CAGGTGCACAACAATAACAT+GGG 0.695885 tig0014834:-41072 None:intergenic
GATCAAGATGATGAACATGG+TGG 0.762207 tig0014834:+41379 Msa1355540:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATACAAAAATATAATTGA+AGG - tig0014834:39971-39990 None:intergenic 10.0%
!! ATTCTATATTAGTAAATTTA+GGG + tig0014834:40819-40838 Msa1355540:intron 10.0%
!! AAGAATTTAAAGAAAGAAAA+AGG + tig0014834:39660-39679 Msa1355540:intron 15.0%
!!! TTTTTGTATGTTTGTAATTT+AGG + tig0014834:39874-39893 Msa1355540:intron 15.0%
!!! TTTTGTATGTTTGTAATTTA+GGG + tig0014834:39875-39894 Msa1355540:intron 15.0%
!! TAAAATGTATATAAAAGGAA+AGG - tig0014834:39936-39955 None:intergenic 15.0%
!! AGAGATAAAATGTATATAAA+AGG - tig0014834:39941-39960 None:intergenic 15.0%
!! TGTATTAGATAAAAATTTGA+TGG + tig0014834:39984-40003 Msa1355540:intron 15.0%
!!! GCTATTTATGTTTATTTTTA+TGG - tig0014834:40182-40201 None:intergenic 15.0%
!! AAACCATGTATTTATTATAT+TGG - tig0014834:40403-40422 None:intergenic 15.0%
!!! AACTTACACAAATAAATTTT+TGG - tig0014834:40509-40528 None:intergenic 15.0%
!!! TTTTTTTTTAATGAGTACAA+GGG - tig0014834:40720-40739 None:intergenic 15.0%
!!! TTTTTTTTTTAATGAGTACA+AGG - tig0014834:40721-40740 None:intergenic 15.0%
!! TTTACTAATATAGAATCATT+AGG - tig0014834:40815-40834 None:intergenic 15.0%
!! GATTCTATATTAGTAAATTT+AGG + tig0014834:40818-40837 Msa1355540:intron 15.0%
!!! TTAGTTGATATTAATAGAAA+AGG - tig0014834:40933-40952 None:intergenic 15.0%
!! CTATAAGGAAAATTATAGAA+TGG - tig0014834:39094-39113 None:intergenic 20.0%
!! AAAGATATGTTGTTACTATA+AGG - tig0014834:39109-39128 None:intergenic 20.0%
!! ATTAGATAAAAATTTGATGG+AGG + tig0014834:39987-40006 Msa1355540:intron 20.0%
!! TTAGATAAAAATTTGATGGA+GGG + tig0014834:39988-40007 Msa1355540:intron 20.0%
!! AAAATTGACAATTGATATCT+AGG + tig0014834:40016-40035 Msa1355540:intron 20.0%
!! AAATTGACAATTGATATCTA+GGG + tig0014834:40017-40036 Msa1355540:intron 20.0%
!! TACTAGAGTTTGAAAAATTA+TGG - tig0014834:40125-40144 None:intergenic 20.0%
!! CATCCAATATAATAAATACA+TGG + tig0014834:40397-40416 Msa1355540:intron 20.0%
!!! TTTTTTTAGTAGTGTGAAAA+GGG - tig0014834:40566-40585 None:intergenic 20.0%
!!! ATTTTTTTAGTAGTGTGAAA+AGG - tig0014834:40567-40586 None:intergenic 20.0%
!!! CATTACAATTTTTTTTGGAA+GGG - tig0014834:40687-40706 None:intergenic 20.0%
!! CTTCCAAAAAAAATTGTAAT+GGG + tig0014834:40686-40705 Msa1355540:intron 20.0%
!!! AATCCCATTACAATTTTTTT+TGG - tig0014834:40692-40711 None:intergenic 20.0%
!!! ATATTAGTAAATTTAGGGTT+TGG + tig0014834:40824-40843 Msa1355540:intron 20.0%
!! AAACATTTGTCAATAAAACA+GGG + tig0014834:40856-40875 Msa1355540:intron 20.0%
!!! ACATATGCATCTATATATTT+TGG - tig0014834:40979-40998 None:intergenic 20.0%
!! AAAATATATAGATGCATATG+TGG + tig0014834:40978-40997 Msa1355540:intron 20.0%
!! AAATATATAGATGCATATGT+GGG + tig0014834:40979-40998 Msa1355540:intron 20.0%
! GATATATGATATGATGATAG+TGG - tig0014834:38980-38999 None:intergenic 25.0%
! AAGGAAAATTATAGAATGGA+GGG - tig0014834:39090-39109 None:intergenic 25.0%
! TAAGGAAAATTATAGAATGG+AGG - tig0014834:39091-39110 None:intergenic 25.0%
! AAATCAGATGAACTTATACT+TGG - tig0014834:39325-39344 None:intergenic 25.0%
! TAAAGGGGTAGAAAAATAAA+GGG - tig0014834:39700-39719 None:intergenic 25.0%
!!! GAAATTTTCTGAAAAAGAAG+AGG + tig0014834:39747-39766 Msa1355540:intron 25.0%
! TATATAAAAGGAAAGGAAAG+GGG - tig0014834:39929-39948 None:intergenic 25.0%
! GTATATAAAAGGAAAGGAAA+GGG - tig0014834:39930-39949 None:intergenic 25.0%
! TGTATATAAAAGGAAAGGAA+AGG - tig0014834:39931-39950 None:intergenic 25.0%
! TGTTAATGTTAACATCATCA+CGG + tig0014834:40076-40095 Msa1355540:intron 25.0%
! ATCCTAATAAAGAAGTAGTT+CGG - tig0014834:40230-40249 None:intergenic 25.0%
!!! TCATTTCAATTGTTTTACCA+CGG - tig0014834:40618-40637 None:intergenic 25.0%
!! TTAAACGTTTTTCTTCAAAG+TGG + tig0014834:40638-40657 Msa1355540:intron 25.0%
!!! CCATTACAATTTTTTTTGGA+AGG - tig0014834:40688-40707 None:intergenic 25.0%
! CCTTCCAAAAAAAATTGTAA+TGG + tig0014834:40685-40704 Msa1355540:intron 25.0%
! CATAAAGATAGAATTAGAGA+TGG - tig0014834:40774-40793 None:intergenic 25.0%
! CAAACATTTGTCAATAAAAC+AGG + tig0014834:40855-40874 Msa1355540:intron 25.0%
! AATATATAGATGCATATGTG+GGG + tig0014834:40980-40999 Msa1355540:intron 25.0%
!! TGATCTTTTGTGCTTAAAAT+CGG - tig0014834:41290-41309 None:intergenic 25.0%
! ATCACTTAAAGATCATATCA+AGG + tig0014834:41306-41325 Msa1355540:CDS 25.0%
!! ATGTTTTGCACTAATTACAT+TGG + tig0014834:41488-41507 Msa1355540:three_prime_UTR 25.0%
!! GATATGATGATAGTGGAAAA+GGG - tig0014834:38973-38992 None:intergenic 30.0%
!! TGATATGATGATAGTGGAAA+AGG - tig0014834:38974-38993 None:intergenic 30.0%
! TGATGATGAAAGATTAGGAA+AGG - tig0014834:39006-39025 None:intergenic 30.0%
! CATGATGATGATGAAAGATT+AGG - tig0014834:39011-39030 None:intergenic 30.0%
TATAGAATGGAGGGTTATTT+AGG - tig0014834:39081-39100 None:intergenic 30.0%
! GAAGATCTTCATGTTTTGTA+GGG - tig0014834:39189-39208 None:intergenic 30.0%
! AGAAGATCTTCATGTTTTGT+AGG - tig0014834:39190-39209 None:intergenic 30.0%
CTTCATATTCATCATTTCCA+TGG - tig0014834:39230-39249 None:intergenic 30.0%
CATGGAAATGATGAATATGA+AGG + tig0014834:39228-39247 Msa1355540:CDS 30.0%
TCCACCAAATAAAATTAGCA+GGG + tig0014834:39405-39424 Msa1355540:CDS 30.0%
CATGTTGTTGTATCTATTGA+AGG - tig0014834:39506-39525 None:intergenic 30.0%
! TTCTTTTACCTGAGTATGAA+TGG - tig0014834:39556-39575 None:intergenic 30.0%
ATGACATAAATTGAAAGCTG+TGG + tig0014834:39615-39634 Msa1355540:intron 30.0%
GTAAAGGGGTAGAAAAATAA+AGG - tig0014834:39701-39720 None:intergenic 30.0%
TTAAGATCTGGCAAAGTAAA+GGG - tig0014834:39716-39735 None:intergenic 30.0%
ATTAAGATCTGGCAAAGTAA+AGG - tig0014834:39717-39736 None:intergenic 30.0%
CCTCAAAAGTAATTAAGATC+TGG - tig0014834:39728-39747 None:intergenic 30.0%
!! CCAGATCTTAATTACTTTTG+AGG + tig0014834:39725-39744 Msa1355540:intron 30.0%
GTTAATGTTAACATCATCAC+GGG + tig0014834:40077-40096 Msa1355540:intron 30.0%
TAATAAAGAAGTAGTTCGGA+AGG - tig0014834:40226-40245 None:intergenic 30.0%
TTCCGAACTACTTCTTTATT+AGG + tig0014834:40225-40244 Msa1355540:intron 30.0%
GAAAAGGTGACAATATATGT+AGG - tig0014834:40255-40274 None:intergenic 30.0%
GTGTATAGGATTAAAGGAAA+AGG - tig0014834:40271-40290 None:intergenic 30.0%
CTTTAATCCTATACACCATA+GGG + tig0014834:40275-40294 Msa1355540:intron 30.0%
! CAATTATTTCTTAGTCCCTA+TGG - tig0014834:40293-40312 None:intergenic 30.0%
TAAGAGGATGTATATGATCT+TGG - tig0014834:40341-40360 None:intergenic 30.0%
AAGATCATATACATCCTCTT+AGG + tig0014834:40340-40359 Msa1355540:intron 30.0%
CAAAAACAAAATTGAATCCG+TGG + tig0014834:40598-40617 Msa1355540:intron 30.0%
GAAGGGACATTACAAAATAT+TGG - tig0014834:40670-40689 None:intergenic 30.0%
ATCTTTATGTGTTACAGAGT+TGG + tig0014834:40785-40804 Msa1355540:intron 30.0%
TCTTTATGTGTTACAGAGTT+GGG + tig0014834:40786-40805 Msa1355540:intron 30.0%
ACATGGATCACAATATAGAA+AGG + tig0014834:41003-41022 Msa1355540:CDS 30.0%
CATGGATCACAATATAGAAA+GGG + tig0014834:41004-41023 Msa1355540:CDS 30.0%
!! AGTGTTCTAAAATCTTTGAG+TGG - tig0014834:41133-41152 None:intergenic 30.0%
CAACACTTTCTACACATAAA+TGG - tig0014834:41190-41209 None:intergenic 30.0%
! AAACTTTGGTATTGTTGTTG+TGG + tig0014834:41262-41281 Msa1355540:CDS 30.0%
! AACTTTGGTATTGTTGTTGT+GGG + tig0014834:41263-41282 Msa1355540:CDS 30.0%
! AAAGATCATATCAAGGCTTT+TGG + tig0014834:41313-41332 Msa1355540:CDS 30.0%
TTGAAGTCATTGGAGAAGTA+GGG - tig0014834:39043-39062 None:intergenic 35.0%
ATTGAAGTCATTGGAGAAGT+AGG - tig0014834:39044-39063 None:intergenic 35.0%
TACTTCTCCAATGACTTCAA+TGG + tig0014834:39043-39062 Msa1355540:CDS 35.0%
CCAATAACCATTGAAGTCAT+TGG - tig0014834:39053-39072 None:intergenic 35.0%
CCAATGACTTCAATGGTTAT+TGG + tig0014834:39050-39069 Msa1355540:CDS 35.0%
! AGAATCTTCCTTTAGTTCCA+TGG + tig0014834:39210-39229 Msa1355540:CDS 35.0%
CATCATTTCCATGGAACTAA+AGG - tig0014834:39221-39240 None:intergenic 35.0%
GTCCACCAAATAAAATTAGC+AGG + tig0014834:39404-39423 Msa1355540:CDS 35.0%
CCACCAAATAAAATTAGCAG+GGG + tig0014834:39406-39425 Msa1355540:CDS 35.0%
! TGACCCCTGCTAATTTTATT+TGG - tig0014834:39412-39431 None:intergenic 35.0%
TGAAGGTCTTGAAACAAAGA+GGG - tig0014834:39489-39508 None:intergenic 35.0%
TTGAAGGTCTTGAAACAAAG+AGG - tig0014834:39490-39509 None:intergenic 35.0%
CAATAGATACAACAACATGC+AGG + tig0014834:39507-39526 Msa1355540:CDS 35.0%
! ACTCTTTTCCATTCATACTC+AGG + tig0014834:39545-39564 Msa1355540:intron 35.0%
TAAGATCTGGCAAAGTAAAG+GGG - tig0014834:39715-39734 None:intergenic 35.0%
CCTATGGTGTATAGGATTAA+AGG - tig0014834:40277-40296 None:intergenic 35.0%
CCTTTAATCCTATACACCAT+AGG + tig0014834:40274-40293 Msa1355540:intron 35.0%
AAACACGTTGAAAACGACAA+AGG + tig0014834:40313-40332 Msa1355540:intron 35.0%
! TTTTTCTTACCATGCCTAAG+AGG - tig0014834:40357-40376 None:intergenic 35.0%
! GTTTCACACAATGCAAGTTT+TGG + tig0014834:40465-40484 Msa1355540:intron 35.0%
! TAGTGTGAAAAGGGAAGTAT+GGG - tig0014834:40557-40576 None:intergenic 35.0%
ACACATTACAAGAGAAAGCA+TGG + tig0014834:41157-41176 Msa1355540:CDS 35.0%
AGAAAAACTGTGGGAAACTT+TGG + tig0014834:41248-41267 Msa1355540:CDS 35.0%
!! CATATCAAGGCTTTTGGAAA+TGG + tig0014834:41319-41338 Msa1355540:CDS 35.0%
GGAAATGGACATAAAGCTTA+TGG + tig0014834:41334-41353 Msa1355540:CDS 35.0%
CAAGATCAAGATGATGAACA+TGG + tig0014834:41376-41395 Msa1355540:CDS 35.0%
! CTTCATGTTTTGTAGGGCTT+AGG - tig0014834:39183-39202 None:intergenic 40.0%
TAGATGCAAAGCCACAGTAA+CGG - tig0014834:39296-39315 None:intergenic 40.0%
! TTACTGTGGCTTTGCATCTA+GGG + tig0014834:39296-39315 Msa1355540:CDS 40.0%
!! CCCCTGCTAATTTTATTTGG+TGG - tig0014834:39409-39428 None:intergenic 40.0%
AAATTAGCAGGGGTCAGTAT+TGG + tig0014834:39416-39435 Msa1355540:CDS 40.0%
!!! GGCTCATTTTTTACATGCTG+TGG + tig0014834:39768-39787 Msa1355540:intron 40.0%
GGGAAGACATAAAATGAGAC+AGG + tig0014834:40097-40116 Msa1355540:intron 40.0%
AACTCTAGTACAAACACGCA+TGG + tig0014834:40135-40154 Msa1355540:intron 40.0%
TCTTAGTCCCTATGGTGTAT+AGG - tig0014834:40285-40304 None:intergenic 40.0%
CATATACATCCTCTTAGGCA+TGG + tig0014834:40345-40364 Msa1355540:intron 40.0%
GTAGTGTGAAAAGGGAAGTA+TGG - tig0014834:40558-40577 None:intergenic 40.0%
TGTGTTCCTCTTAGAGATTC+TGG - tig0014834:41031-41050 None:intergenic 40.0%
CAGGTGCACAACAATAACAT+GGG - tig0014834:41075-41094 None:intergenic 40.0%
TCAATGTTGTTCTTGCATCC+AGG - tig0014834:41094-41113 None:intergenic 40.0%
!! TCTTTGAGTGGTTTTGCTCT+TGG - tig0014834:41121-41140 None:intergenic 40.0%
! TGCAAAGCATTTGCAGTAAG+AGG + tig0014834:41208-41227 Msa1355540:CDS 40.0%
AGAACTCACGAGAAAAACTG+TGG + tig0014834:41238-41257 Msa1355540:CDS 40.0%
GAACTCACGAGAAAAACTGT+GGG + tig0014834:41239-41258 Msa1355540:CDS 40.0%
GATCAAGATGATGAACATGG+TGG + tig0014834:41379-41398 Msa1355540:CDS 40.0%
CTATAAAGACAAGACAGCTG+TGG + tig0014834:41463-41482 Msa1355540:three_prime_UTR 40.0%
AAAGGAAGAGCTTCTCTTGG+AGG - tig0014834:39154-39173 None:intergenic 45.0%
AGCAAAGGAAGAGCTTCTCT+TGG - tig0014834:39157-39176 None:intergenic 45.0%
GTAGGGCTTAGGTTAAGCAA+AGG - tig0014834:39172-39191 None:intergenic 45.0%
! AGATGATGATGCCGTTACTG+TGG + tig0014834:39282-39301 Msa1355540:CDS 45.0%
! GTTACTGTGGCTTTGCATCT+AGG + tig0014834:39295-39314 Msa1355540:CDS 45.0%
TTAGAATCTGAGCAGGGGTA+GGG - tig0014834:39444-39463 None:intergenic 45.0%
ATTAGAATCTGAGCAGGGGT+AGG - tig0014834:39445-39464 None:intergenic 45.0%
ACCCCTGCTCAGATTCTAAT+CGG + tig0014834:39445-39464 Msa1355540:CDS 45.0%
ACCGATTAGAATCTGAGCAG+GGG - tig0014834:39449-39468 None:intergenic 45.0%
GACCGATTAGAATCTGAGCA+GGG - tig0014834:39450-39469 None:intergenic 45.0%
! AGAGGGCATGAAAACTGTGT+TGG - tig0014834:39472-39491 None:intergenic 45.0%
GTAGTTCGGAAGGCAAACAA+GGG - tig0014834:40216-40235 None:intergenic 45.0%
AGTAGTTCGGAAGGCAAACA+AGG - tig0014834:40217-40236 None:intergenic 45.0%
TAGATGCATATGTGGGGACA+TGG + tig0014834:40986-41005 Msa1355540:intron 45.0%
AAGGGACCAGAATCTCTAAG+AGG + tig0014834:41022-41041 Msa1355540:CDS 45.0%
CCAGGTGCACAACAATAACA+TGG - tig0014834:41076-41095 None:intergenic 45.0%
CCATGTTATTGTTGTGCACC+TGG + tig0014834:41073-41092 Msa1355540:CDS 45.0%
CATTTGCAGTAAGAGGTGAC+TGG + tig0014834:41215-41234 Msa1355540:CDS 45.0%
TCTCTTGGAGGTGGAGATGA+AGG - tig0014834:39142-39161 None:intergenic 50.0%
GGACCGATTAGAATCTGAGC+AGG - tig0014834:39451-39470 None:intergenic 50.0%
GGGAGTCTTAGCATTGCTGT+TGG - tig0014834:41055-41074 None:intergenic 50.0%
GGAAGAGCTTCTCTTGGAGG+TGG - tig0014834:39151-39170 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
tig0014834 gene 38970 41603 38970 ID=Msa1355540;Name=Msa1355540
tig0014834 mRNA 38970 41603 38970 ID=Msa1355540-mRNA-1;Parent=Msa1355540;Name=Msa1355540-mRNA-1;_AED=0.01;_eAED=0.01;_QI=58|1|1|1|1|1|2|162|317
tig0014834 exon 38970 39528 38970 ID=Msa1355540-mRNA-1:exon:9484;Parent=Msa1355540-mRNA-1
tig0014834 exon 40989 41603 40989 ID=Msa1355540-mRNA-1:exon:9485;Parent=Msa1355540-mRNA-1
tig0014834 five_prime_UTR 38970 39027 38970 ID=Msa1355540-mRNA-1:five_prime_utr;Parent=Msa1355540-mRNA-1
tig0014834 CDS 39028 39528 39028 ID=Msa1355540-mRNA-1:cds;Parent=Msa1355540-mRNA-1
tig0014834 CDS 40989 41441 40989 ID=Msa1355540-mRNA-1:cds;Parent=Msa1355540-mRNA-1
tig0014834 three_prime_UTR 41442 41603 41442 ID=Msa1355540-mRNA-1:three_prime_utr;Parent=Msa1355540-mRNA-1
Gene Sequence

>Msa1355540

ATGAGTACTCATCCCTACTTCTCCAATGACTTCAATGGTTATTGGTTTGACCTAAATAACCCTCCATTCTATAATTTTCCTTATAGTAACAACATATCTTTTGCATCTTCTCCTTCATCTCCACCTCCAAGAGAAGCTCTTCCTTTGCTTAACCTAAGCCCTACAAAACATGAAGATCTTCTAGAATCTTCCTTTAGTTCCATGGAAATGATGAATATGAAGGAGAAAGAACTAAGCATATCATCAAATTCTTTAGATGATGATGCCGTTACTGTGGCTTTGCATCTAGGGCTTCCAAGTATAAGTTCATCTGATTTAGCTTCTTCAAATATTTACAAAGATGATGAAAAAGTAGTGACTGTTGATTCTTCTGAGTGTCCACCAAATAAAATTAGCAGGGGTCAGTATTGGATCCCTACCCCTGCTCAGATTCTAATCGGTCCAACACAGTTTTCATGCCCTCTTTGTTTCAAGACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAATATAGAAAGGGACCAGAATCTCTAAGAGGAACACAACCAACAGCAATGCTAAGACTCCCATGTTATTGTTGTGCACCTGGATGCAAGAACAACATTGATCATCCAAGAGCAAAACCACTCAAAGATTTTAGAACACTTCAAACACATTACAAGAGAAAGCATGGAATAAAGCCATTTATGTGTAGAAAGTGTTGCAAAGCATTTGCAGTAAGAGGTGACTGGAGAACTCACGAGAAAAACTGTGGGAAACTTTGGTATTGTTGTTGTGGGTCCGATTTTAAGCACAAAAGATCACTTAAAGATCATATCAAGGCTTTTGGAAATGGACATAAAGCTTATGGAATTGACGAATGTCTTGATCAAGATCAAGATGATGAACATGGTGGCTCTGAAATTGAGCAAGACAATGAATCTTTTCAGTCATAG

Protein sequence

>Msa1355540

MSTHPYFSNDFNGYWFDLNNPPFYNFPYSNNISFASSPSSPPPREALPLLNLSPTKHEDLLESSFSSMEMMNMKEKELSISSNSLDDDAVTVALHLGLPSISSSDLASSNIYKDDEKVVTVDSSECPPNKISRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCCCGSDFKHKRSLKDHIKAFGNGHKAYGIDECLDQDQDDEHGGSEIEQDNESFQS*