AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0264710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264710 MtrunA17_Chr2g0328921 99.054 317 1 1 1 317 1 315 0.0 655
Msa0264710 MtrunA17_Chr7g0258011 66.319 288 72 5 44 313 67 347 6.07e-133 381
Msa0264710 MtrunA17_Chr1g0173841 63.036 303 78 5 44 317 93 390 7.27e-133 383
Msa0264710 MtrunA17_Chr8g0352011 64.931 288 80 8 44 314 55 338 7.40e-127 365
Msa0264710 MtrunA17_Chr5g0422571 68.349 218 55 4 84 298 56 262 4.20e-108 316
Msa0264710 MtrunA17_Chr2g0321291 60.166 241 85 3 73 307 67 302 3.43e-105 310
Msa0264710 MtrunA17_Chr4g0026521 59.289 253 92 4 60 310 48 291 7.58e-103 303
Msa0264710 MtrunA17_Chr1g0198651 78.261 161 32 1 135 292 99 259 1.73e-95 284
Msa0264710 MtrunA17_Chr4g0053341 60.870 230 75 4 60 289 11 225 7.14e-94 278
Msa0264710 MtrunA17_Chr1g0200421 39.597 149 80 5 145 286 245 390 1.30e-25 106
Msa0264710 MtrunA17_Chr2g0320341 34.615 156 95 3 138 286 231 386 5.17e-22 95.5
Msa0264710 MtrunA17_Chr4g0029521 35.971 139 80 4 145 282 61 191 1.51e-19 89.0
Msa0264710 MtrunA17_Chr7g0268961 34.868 152 81 7 139 282 33 174 1.65e-19 89.0
Msa0264710 MtrunA17_Chr8g0342421 30.151 199 116 8 97 282 26 214 2.42e-19 88.6
Msa0264710 MtrunA17_Chr1g0199101 33.939 165 89 8 128 282 45 199 2.94e-19 88.2
Msa0264710 MtrunA17_Chr8g0382121 38.849 139 78 6 153 286 127 263 3.10e-19 86.7
Msa0264710 MtrunA17_Chr1g0151351 35.211 142 81 5 143 282 62 194 3.38e-19 87.8
Msa0264710 MtrunA17_Chr1g0181381 34.247 146 87 4 138 282 54 191 4.74e-19 87.4
Msa0264710 MtrunA17_Chr1g0185121 35.211 142 81 5 143 282 61 193 8.18e-19 86.7
Msa0264710 MtrunA17_Chr1g0163001 32.927 164 92 6 128 282 41 195 8.53e-19 86.7
Msa0264710 MtrunA17_Chr1g0210821 33.562 146 87 5 138 282 60 196 1.13e-18 86.7
Msa0264710 MtrunA17_Chr2g0326381 34.247 146 87 4 138 282 48 185 1.19e-18 85.9
Msa0264710 MtrunA17_Chr1g0191991 34.337 166 89 7 127 282 60 215 1.45e-18 86.3
Msa0264710 MtrunA17_Chr1g0162971 35.252 139 80 5 145 282 64 193 1.46e-18 85.9
Msa0264710 MtrunA17_Chr7g0263941 34.694 147 84 6 138 282 50 186 3.89e-18 84.3
Msa0264710 MtrunA17_Chr2g0330171 32.877 146 88 4 138 282 62 198 5.35e-18 84.3
Msa0264710 MtrunA17_Chr8g0373541 33.813 139 82 4 145 282 56 185 7.48e-18 84.0
Msa0264710 MtrunA17_Chr3g0123941 35.152 165 93 7 153 313 139 293 8.82e-18 82.8
Msa0264710 MtrunA17_Chr2g0324991 33.803 142 84 5 138 277 8 141 8.93e-17 76.3
Msa0264710 MtrunA17_Chr4g0040571 31.507 146 90 4 138 282 55 191 1.28e-16 80.1
Msa0264710 MtrunA17_Chr3g0141431 30.723 166 97 5 123 278 15 172 1.98e-16 79.3
Msa0264710 MtrunA17_Chr8g0375521 30.986 142 87 5 143 281 48 181 7.38e-13 68.9
Msa0264710 MtrunA17_Chr6g0479921 28.966 145 93 4 143 285 50 186 3.32e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0264710 AT1G51220.1 61.801 322 95 8 6 310 27 337 3.07e-131 377
Msa0264710 AT3G57670.1 61.059 321 73 5 44 317 67 382 2.69e-127 369
Msa0264710 AT3G20880.1 61.462 301 82 7 36 310 118 410 9.49e-123 358
Msa0264710 AT1G13290.1 68.269 208 50 4 88 293 52 245 5.10e-102 301
Msa0264710 AT1G34790.1 68.159 201 63 1 90 289 83 283 3.99e-100 297
Msa0264710 AT1G08290.1 72.571 175 41 2 113 286 148 316 1.65e-94 284
Msa0264710 AT1G34370.3 37.209 172 89 6 131 286 7 175 2.45e-26 105
Msa0264710 AT1G34370.2 39.735 151 79 5 145 286 238 385 5.12e-26 108
Msa0264710 AT1G34370.1 39.735 151 79 5 145 286 238 385 5.12e-26 108
Msa0264710 AT5G22890.1 38.994 159 83 7 142 290 209 363 8.24e-23 97.8
Msa0264710 AT2G02080.1 31.088 193 113 6 101 282 23 206 1.46e-20 92.4
Msa0264710 AT2G02080.4 31.088 193 113 6 101 282 23 206 1.46e-20 92.4
Msa0264710 AT2G02080.5 31.088 193 113 6 101 282 23 206 1.46e-20 92.4
Msa0264710 AT2G02080.3 31.088 193 113 6 101 282 23 206 1.46e-20 92.4
Msa0264710 AT1G14580.1 34.320 169 93 5 123 282 46 205 5.56e-20 90.5
Msa0264710 AT1G14580.2 34.320 169 93 5 123 282 46 205 5.56e-20 90.5
Msa0264710 AT1G14580.3 34.320 169 93 5 123 282 60 219 6.76e-20 90.5
Msa0264710 AT1G55110.3 30.455 220 123 8 73 282 17 216 1.68e-19 89.0
Msa0264710 AT1G55110.1 30.455 220 123 8 73 282 17 216 1.68e-19 89.0
Msa0264710 AT1G55110.2 30.455 220 123 8 73 282 17 216 1.68e-19 89.0
Msa0264710 AT5G03150.1 35.252 139 81 4 145 282 76 206 2.28e-19 89.0
Msa0264710 AT5G66730.1 29.843 191 111 7 105 282 4 184 4.62e-19 87.8
Msa0264710 AT2G02070.2 34.247 146 86 4 138 282 68 204 7.95e-19 87.4
Msa0264710 AT2G02070.1 34.247 146 86 4 138 282 68 204 7.95e-19 87.4
Msa0264710 AT2G02080.6 34.783 138 80 4 146 282 1 129 3.28e-18 85.1
Msa0264710 AT2G02080.2 34.783 138 80 4 146 282 1 129 3.28e-18 85.1
Msa0264710 AT1G03840.2 33.562 146 87 5 138 282 55 191 1.69e-17 83.2
Msa0264710 AT1G03840.1 33.562 146 87 5 138 282 57 193 1.78e-17 83.2
Msa0264710 AT5G44160.1 33.094 139 83 4 145 282 60 189 2.21e-17 82.8
Msa0264710 AT3G45260.2 35.252 139 81 4 145 282 62 192 2.65e-17 82.4
Msa0264710 AT3G45260.1 35.252 139 81 4 145 282 62 192 2.65e-17 82.4
Msa0264710 AT5G44160.2 33.094 139 83 4 145 282 21 150 3.09e-17 82.4
Msa0264710 AT5G60470.2 34.074 135 81 3 145 278 67 194 3.24e-17 82.4
Msa0264710 AT5G60470.3 34.074 135 81 3 145 278 63 190 3.32e-17 82.4
Msa0264710 AT5G60470.1 34.074 135 81 3 145 278 58 185 3.56e-17 82.0
Msa0264710 AT3G50700.1 32.192 146 89 4 138 282 50 186 1.48e-16 80.5
Msa0264710 AT4G02670.1 32.192 146 90 3 138 282 69 206 1.94e-16 79.7
Msa0264710 AT4G02670.2 32.192 146 90 3 138 282 71 208 2.05e-16 79.7
Msa0264710 AT3G13810.5 32.192 146 90 4 138 282 81 218 3.89e-16 79.3
Msa0264710 AT3G13810.4 32.192 146 90 4 138 282 86 223 4.07e-16 79.3
Msa0264710 AT3G13810.1 32.192 146 90 4 138 282 86 223 4.07e-16 79.3
Msa0264710 AT3G13810.2 32.192 146 90 4 138 282 87 224 4.12e-16 79.3
Msa0264710 AT3G13810.3 32.192 146 90 4 138 282 73 210 4.17e-16 79.3
Msa0264710 AT3G13810.6 32.192 146 90 4 138 282 67 204 4.65e-16 79.0

Find 71 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGTTCCTCTTAGAGATTC+TGG 0.183675 2_2:-64659221 None:intergenic
CCAATGACTTCAATGGTTAT+TGG 0.191789 2_2:+64657244 Msa0264710:CDS
CAACACTTTCTACACATAAA+TGG 0.204972 2_2:-64659380 None:intergenic
AAAGATCATATCAAGGCTTT+TGG 0.250816 2_2:+64659506 Msa0264710:CDS
GGAAATGGACATAAAGCTTA+TGG 0.262958 2_2:+64659527 Msa0264710:CDS
TATAGAATGGAGGGTTATTT+AGG 0.265203 2_2:-64657272 None:intergenic
GTTACTGTGGCTTTGCATCT+AGG 0.282488 2_2:+64657489 Msa0264710:CDS
AAAGATATGTTGTTACTATA+AGG 0.326372 2_2:-64657300 None:intergenic
CATGTTGTTGTATCTATTGA+AGG 0.358064 2_2:-64657697 None:intergenic
CATGATGATGATGAAAGATT+AGG 0.383112 2_2:-64657202 None:intergenic
CATCATTTCCATGGAACTAA+AGG 0.398872 2_2:-64657412 None:intergenic
TGATATGATGATAGTGGAAA+AGG 0.399989 2_2:-64657165 None:intergenic
AACTTTGGTATTGTTGTTGT+GGG 0.402964 2_2:+64659456 Msa0264710:CDS
CCAATAACCATTGAAGTCAT+TGG 0.409520 2_2:-64657244 None:intergenic
TGCAAAGCATTTGCAGTAAG+AGG 0.436467 2_2:+64659401 Msa0264710:CDS
AGAATCTTCCTTTAGTTCCA+TGG 0.448392 2_2:+64657404 Msa0264710:CDS
CTTCATATTCATCATTTCCA+TGG 0.449667 2_2:-64657421 None:intergenic
GATATATGATATGATGATAG+TGG 0.455440 2_2:-64657171 None:intergenic
TTACTGTGGCTTTGCATCTA+GGG 0.458041 2_2:+64657490 Msa0264710:CDS
AAACTTTGGTATTGTTGTTG+TGG 0.458245 2_2:+64659455 Msa0264710:CDS
GTCCACCAAATAAAATTAGC+AGG 0.460803 2_2:+64657598 Msa0264710:CDS
CCATGTTATTGTTGTGCACC+TGG 0.466023 2_2:+64659266 Msa0264710:CDS
ATTGAAGTCATTGGAGAAGT+AGG 0.466777 2_2:-64657235 None:intergenic
ACCCCTGCTCAGATTCTAAT+CGG 0.468227 2_2:+64657639 Msa0264710:CDS
TCTCTTGGAGGTGGAGATGA+AGG 0.479256 2_2:-64657333 None:intergenic
AAAGGAAGAGCTTCTCTTGG+AGG 0.486389 2_2:-64657345 None:intergenic
AAATCAGATGAACTTATACT+TGG 0.487140 2_2:-64657516 None:intergenic
AAAATATATAGATGCATATG+TGG 0.490811 2_2:+64659171 Msa0264710:intron
AGCAAAGGAAGAGCTTCTCT+TGG 0.490887 2_2:-64657348 None:intergenic
TACTTCTCCAATGACTTCAA+TGG 0.492298 2_2:+64657237 Msa0264710:CDS
GATATGATGATAGTGGAAAA+GGG 0.496004 2_2:-64657164 None:intergenic
TTGAAGGTCTTGAAACAAAG+AGG 0.499110 2_2:-64657681 None:intergenic
AAATTAGCAGGGGTCAGTAT+TGG 0.506191 2_2:+64657610 Msa0264710:CDS
TAAGGAAAATTATAGAATGG+AGG 0.508828 2_2:-64657282 None:intergenic
GGACCGATTAGAATCTGAGC+AGG 0.523985 2_2:-64657642 None:intergenic
CATGGAAATGATGAATATGA+AGG 0.524476 2_2:+64657422 Msa0264710:CDS
GGAAGAGCTTCTCTTGGAGG+TGG 0.534319 2_2:-64657342 None:intergenic
ATCACTTAAAGATCATATCA+AGG 0.535427 2_2:+64659499 Msa0264710:CDS
ACATGGATCACAATATAGAA+AGG 0.537364 2_2:+64659196 Msa0264710:CDS
CTATAAGGAAAATTATAGAA+TGG 0.547263 2_2:-64657285 None:intergenic
CCAGGTGCACAACAATAACA+TGG 0.547993 2_2:-64659266 None:intergenic
AAATATATAGATGCATATGT+GGG 0.547995 2_2:+64659172 Msa0264710:intron
ATTAGAATCTGAGCAGGGGT+AGG 0.550899 2_2:-64657636 None:intergenic
AAGGAAAATTATAGAATGGA+GGG 0.551334 2_2:-64657281 None:intergenic
TTGAAGTCATTGGAGAAGTA+GGG 0.551474 2_2:-64657234 None:intergenic
TCAATGTTGTTCTTGCATCC+AGG 0.558572 2_2:-64659284 None:intergenic
AGAGGGCATGAAAACTGTGT+TGG 0.560971 2_2:-64657663 None:intergenic
CATGGATCACAATATAGAAA+GGG 0.565142 2_2:+64659197 Msa0264710:CDS
ACACATTACAAGAGAAAGCA+TGG 0.565234 2_2:+64659350 Msa0264710:CDS
GGGAGTCTTAGCATTGCTGT+TGG 0.566939 2_2:-64659245 None:intergenic
TTAGAATCTGAGCAGGGGTA+GGG 0.569587 2_2:-64657635 None:intergenic
TAGATGCATATGTGGGGACA+TGG 0.582440 2_2:+64659179 Msa0264710:intron
AAGGGACCAGAATCTCTAAG+AGG 0.583893 2_2:+64659215 Msa0264710:CDS
TCCACCAAATAAAATTAGCA+GGG 0.584942 2_2:+64657599 Msa0264710:CDS
TGATGATGAAAGATTAGGAA+AGG 0.592084 2_2:-64657197 None:intergenic
ATATATACTCAGATATGTTG+TGG 0.592325 2_2:+64659774 Msa0264710:three_prime_UTR
AGTGTTCTAAAATCTTTGAG+TGG 0.612744 2_2:-64659323 None:intergenic
TGAAGGTCTTGAAACAAAGA+GGG 0.613383 2_2:-64657680 None:intergenic
GTAGGGCTTAGGTTAAGCAA+AGG 0.619991 2_2:-64657363 None:intergenic
GACCGATTAGAATCTGAGCA+GGG 0.623713 2_2:-64657641 None:intergenic
CATTTGCAGTAAGAGGTGAC+TGG 0.624837 2_2:+64659408 Msa0264710:CDS
AGATGATGATGCCGTTACTG+TGG 0.634808 2_2:+64657476 Msa0264710:CDS
CAATAGATACAACAACATGC+AGG 0.643534 2_2:+64657701 Msa0264710:CDS
TAGATGCAAAGCCACAGTAA+CGG 0.646015 2_2:-64657487 None:intergenic
CTATAAAGACAAGACAGCTG+TGG 0.651073 2_2:+64659656 Msa0264710:three_prime_UTR
CAAGATCAAGATGATGAACA+TGG 0.669051 2_2:+64659569 Msa0264710:CDS
AATATATAGATGCATATGTG+GGG 0.677061 2_2:+64659173 Msa0264710:intron
CCACCAAATAAAATTAGCAG+GGG 0.685279 2_2:+64657600 Msa0264710:CDS
ACCGATTAGAATCTGAGCAG+GGG 0.690964 2_2:-64657640 None:intergenic
CAGGTGCACAACAATAACAT+GGG 0.695885 2_2:-64659265 None:intergenic
GATCAAGATGATGAACATGG+TGG 0.762207 2_2:+64659572 Msa0264710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATACAAAAATATAATTGA+AGG - chr2_2:64658165-64658184 None:intergenic 10.0%
!! ATTCTATATTAGTAAATTTA+GGG + chr2_2:64659012-64659031 Msa0264710:intron 10.0%
!! AAGAATTTAAAGAAAGAAAA+AGG + chr2_2:64657854-64657873 Msa0264710:intron 15.0%
!!! TTTTTGTATGTTTGTAATTT+AGG + chr2_2:64658068-64658087 Msa0264710:intron 15.0%
!!! TTTTGTATGTTTGTAATTTA+GGG + chr2_2:64658069-64658088 Msa0264710:intron 15.0%
!! TAAAATGTATATAAAAGGAA+AGG - chr2_2:64658130-64658149 None:intergenic 15.0%
!! AGAGATAAAATGTATATAAA+AGG - chr2_2:64658135-64658154 None:intergenic 15.0%
!! TGTATTAGATAAAAATTTGA+TGG + chr2_2:64658178-64658197 Msa0264710:intron 15.0%
!!! GCTATTTATGTTTATTTTTA+TGG - chr2_2:64658376-64658395 None:intergenic 15.0%
!! AAACCATGTATTTATTATAT+TGG - chr2_2:64658597-64658616 None:intergenic 15.0%
!!! AACTTACACAAATAAATTTT+TGG - chr2_2:64658703-64658722 None:intergenic 15.0%
!!! TTTTTTTTTAATGAGTACAA+GGG - chr2_2:64658914-64658933 None:intergenic 15.0%
!!! TTTTTTTTTTAATGAGTACA+AGG - chr2_2:64658915-64658934 None:intergenic 15.0%
!! TTTACTAATATAGAATCATT+AGG - chr2_2:64659008-64659027 None:intergenic 15.0%
!! GATTCTATATTAGTAAATTT+AGG + chr2_2:64659011-64659030 Msa0264710:intron 15.0%
!!! TTAGTTGATATTAATAGAAA+AGG - chr2_2:64659126-64659145 None:intergenic 15.0%
!! CTATAAGGAAAATTATAGAA+TGG - chr2_2:64657288-64657307 None:intergenic 20.0%
!! AAAGATATGTTGTTACTATA+AGG - chr2_2:64657303-64657322 None:intergenic 20.0%
!! ATTATGACATAAATTGAAAG+CGG + chr2_2:64657806-64657825 Msa0264710:intron 20.0%
!! ATTAGATAAAAATTTGATGG+AGG + chr2_2:64658181-64658200 Msa0264710:intron 20.0%
!! TTAGATAAAAATTTGATGGA+GGG + chr2_2:64658182-64658201 Msa0264710:intron 20.0%
!! AAAATTGACAATTGATATCT+AGG + chr2_2:64658210-64658229 Msa0264710:intron 20.0%
!! AAATTGACAATTGATATCTA+GGG + chr2_2:64658211-64658230 Msa0264710:intron 20.0%
!! TACTAGAGTTTGAAAAATTA+TGG - chr2_2:64658319-64658338 None:intergenic 20.0%
!! CATCCAATATAATAAATACA+TGG + chr2_2:64658591-64658610 Msa0264710:intron 20.0%
!!! TTTTTTTAGTAGTGTGAAAA+GGG - chr2_2:64658760-64658779 None:intergenic 20.0%
!!! ATTTTTTTAGTAGTGTGAAA+AGG - chr2_2:64658761-64658780 None:intergenic 20.0%
!!! CATTACAATTTTTTTTGGAA+GGG - chr2_2:64658881-64658900 None:intergenic 20.0%
!! CTTCCAAAAAAAATTGTAAT+GGG + chr2_2:64658880-64658899 Msa0264710:intron 20.0%
!!! AATCCCATTACAATTTTTTT+TGG - chr2_2:64658886-64658905 None:intergenic 20.0%
!!! ATATTAGTAAATTTAGGGTT+TGG + chr2_2:64659017-64659036 Msa0264710:intron 20.0%
!! AAACATTTGTCAATAAAACA+GGG + chr2_2:64659049-64659068 Msa0264710:intron 20.0%
!!! ACATATGCATCTATATATTT+TGG - chr2_2:64659172-64659191 None:intergenic 20.0%
!! AAAATATATAGATGCATATG+TGG + chr2_2:64659171-64659190 Msa0264710:intron 20.0%
!! AAATATATAGATGCATATGT+GGG + chr2_2:64659172-64659191 Msa0264710:intron 20.0%
! GATATATGATATGATGATAG+TGG - chr2_2:64657174-64657193 None:intergenic 25.0%
! AAGGAAAATTATAGAATGGA+GGG - chr2_2:64657284-64657303 None:intergenic 25.0%
! TAAGGAAAATTATAGAATGG+AGG - chr2_2:64657285-64657304 None:intergenic 25.0%
! AAATCAGATGAACTTATACT+TGG - chr2_2:64657519-64657538 None:intergenic 25.0%
! TAAAGGGGTAGAAAAATAAA+GGG - chr2_2:64657894-64657913 None:intergenic 25.0%
!!! GAAATTTTCTGAAAAAGAAG+AGG + chr2_2:64657941-64657960 Msa0264710:intron 25.0%
! TATATAAAAGGAAAGGAAAG+GGG - chr2_2:64658123-64658142 None:intergenic 25.0%
! GTATATAAAAGGAAAGGAAA+GGG - chr2_2:64658124-64658143 None:intergenic 25.0%
! TGTATATAAAAGGAAAGGAA+AGG - chr2_2:64658125-64658144 None:intergenic 25.0%
! TGTTAATGTTAACATCATCA+CGG + chr2_2:64658270-64658289 Msa0264710:intron 25.0%
! ATCCTAATAAAGAAGTAGTT+CGG - chr2_2:64658424-64658443 None:intergenic 25.0%
!!! TCATTTCAATTGTTTTACCA+CGG - chr2_2:64658812-64658831 None:intergenic 25.0%
!! TTAAACGTTTTTCTTCAAAG+TGG + chr2_2:64658832-64658851 Msa0264710:intron 25.0%
!!! CCATTACAATTTTTTTTGGA+AGG - chr2_2:64658882-64658901 None:intergenic 25.0%
! CCTTCCAAAAAAAATTGTAA+TGG + chr2_2:64658879-64658898 Msa0264710:intron 25.0%
! CATAAAGATAGAATTAGAGA+TGG - chr2_2:64658967-64658986 None:intergenic 25.0%
! CAAACATTTGTCAATAAAAC+AGG + chr2_2:64659048-64659067 Msa0264710:intron 25.0%
! AATATATAGATGCATATGTG+GGG + chr2_2:64659173-64659192 Msa0264710:intron 25.0%
!! TGATCTTTTGTGCTTAAAAT+CGG - chr2_2:64659483-64659502 None:intergenic 25.0%
! ATCACTTAAAGATCATATCA+AGG + chr2_2:64659499-64659518 Msa0264710:CDS 25.0%
!! ATGTTTTGCACTAATTACAT+TGG + chr2_2:64659681-64659700 Msa0264710:three_prime_UTR 25.0%
!! GATATGATGATAGTGGAAAA+GGG - chr2_2:64657167-64657186 None:intergenic 30.0%
!! TGATATGATGATAGTGGAAA+AGG - chr2_2:64657168-64657187 None:intergenic 30.0%
! TGATGATGAAAGATTAGGAA+AGG - chr2_2:64657200-64657219 None:intergenic 30.0%
! CATGATGATGATGAAAGATT+AGG - chr2_2:64657205-64657224 None:intergenic 30.0%
TATAGAATGGAGGGTTATTT+AGG - chr2_2:64657275-64657294 None:intergenic 30.0%
! GAAGATCTTCATGTTTTGTA+GGG - chr2_2:64657383-64657402 None:intergenic 30.0%
! AGAAGATCTTCATGTTTTGT+AGG - chr2_2:64657384-64657403 None:intergenic 30.0%
CTTCATATTCATCATTTCCA+TGG - chr2_2:64657424-64657443 None:intergenic 30.0%
CATGGAAATGATGAATATGA+AGG + chr2_2:64657422-64657441 Msa0264710:CDS 30.0%
TCCACCAAATAAAATTAGCA+GGG + chr2_2:64657599-64657618 Msa0264710:CDS 30.0%
CATGTTGTTGTATCTATTGA+AGG - chr2_2:64657700-64657719 None:intergenic 30.0%
! TTCTTTTACCTGAGTATGAA+TGG - chr2_2:64657750-64657769 None:intergenic 30.0%
GTAAAGGGGTAGAAAAATAA+AGG - chr2_2:64657895-64657914 None:intergenic 30.0%
TTAAGATCTGGCAAAGTAAA+GGG - chr2_2:64657910-64657929 None:intergenic 30.0%
ATTAAGATCTGGCAAAGTAA+AGG - chr2_2:64657911-64657930 None:intergenic 30.0%
CCTCAAAAGTAATTAAGATC+TGG - chr2_2:64657922-64657941 None:intergenic 30.0%
!! CCAGATCTTAATTACTTTTG+AGG + chr2_2:64657919-64657938 Msa0264710:intron 30.0%
GTTAATGTTAACATCATCAC+GGG + chr2_2:64658271-64658290 Msa0264710:intron 30.0%
TAATAAAGAAGTAGTTCGGA+AGG - chr2_2:64658420-64658439 None:intergenic 30.0%
TTCCGAACTACTTCTTTATT+AGG + chr2_2:64658419-64658438 Msa0264710:intron 30.0%
GAAAAGGTGACAATATATGT+AGG - chr2_2:64658449-64658468 None:intergenic 30.0%
GTGTATAGGATTAAAGGAAA+AGG - chr2_2:64658465-64658484 None:intergenic 30.0%
CTTTAATCCTATACACCATA+GGG + chr2_2:64658469-64658488 Msa0264710:intron 30.0%
! CAATTATTTCTTAGTCCCTA+TGG - chr2_2:64658487-64658506 None:intergenic 30.0%
TAAGAGGATGTATATGATCT+TGG - chr2_2:64658535-64658554 None:intergenic 30.0%
AAGATCATATACATCCTCTT+AGG + chr2_2:64658534-64658553 Msa0264710:intron 30.0%
CAAAAACAAAATTGAATCCG+TGG + chr2_2:64658792-64658811 Msa0264710:intron 30.0%
GAAGGGACATTACAAAATAT+TGG - chr2_2:64658864-64658883 None:intergenic 30.0%
ATCTTTATGTGTTACAGAGT+TGG + chr2_2:64658978-64658997 Msa0264710:intron 30.0%
TCTTTATGTGTTACAGAGTT+GGG + chr2_2:64658979-64658998 Msa0264710:intron 30.0%
ACATGGATCACAATATAGAA+AGG + chr2_2:64659196-64659215 Msa0264710:CDS 30.0%
CATGGATCACAATATAGAAA+GGG + chr2_2:64659197-64659216 Msa0264710:CDS 30.0%
!! AGTGTTCTAAAATCTTTGAG+TGG - chr2_2:64659326-64659345 None:intergenic 30.0%
CAACACTTTCTACACATAAA+TGG - chr2_2:64659383-64659402 None:intergenic 30.0%
! AAACTTTGGTATTGTTGTTG+TGG + chr2_2:64659455-64659474 Msa0264710:CDS 30.0%
! AACTTTGGTATTGTTGTTGT+GGG + chr2_2:64659456-64659475 Msa0264710:CDS 30.0%
! AAAGATCATATCAAGGCTTT+TGG + chr2_2:64659506-64659525 Msa0264710:CDS 30.0%
TTGAAGTCATTGGAGAAGTA+GGG - chr2_2:64657237-64657256 None:intergenic 35.0%
ATTGAAGTCATTGGAGAAGT+AGG - chr2_2:64657238-64657257 None:intergenic 35.0%
TACTTCTCCAATGACTTCAA+TGG + chr2_2:64657237-64657256 Msa0264710:CDS 35.0%
CCAATAACCATTGAAGTCAT+TGG - chr2_2:64657247-64657266 None:intergenic 35.0%
CCAATGACTTCAATGGTTAT+TGG + chr2_2:64657244-64657263 Msa0264710:CDS 35.0%
! AGAATCTTCCTTTAGTTCCA+TGG + chr2_2:64657404-64657423 Msa0264710:CDS 35.0%
CATCATTTCCATGGAACTAA+AGG - chr2_2:64657415-64657434 None:intergenic 35.0%
GTCCACCAAATAAAATTAGC+AGG + chr2_2:64657598-64657617 Msa0264710:CDS 35.0%
CCACCAAATAAAATTAGCAG+GGG + chr2_2:64657600-64657619 Msa0264710:CDS 35.0%
! TGACCCCTGCTAATTTTATT+TGG - chr2_2:64657606-64657625 None:intergenic 35.0%
TGAAGGTCTTGAAACAAAGA+GGG - chr2_2:64657683-64657702 None:intergenic 35.0%
TTGAAGGTCTTGAAACAAAG+AGG - chr2_2:64657684-64657703 None:intergenic 35.0%
CAATAGATACAACAACATGC+AGG + chr2_2:64657701-64657720 Msa0264710:CDS 35.0%
! ACTCTTTTCCATTCATACTC+AGG + chr2_2:64657739-64657758 Msa0264710:intron 35.0%
ATGACATAAATTGAAAGCGG+TGG + chr2_2:64657809-64657828 Msa0264710:intron 35.0%
TAAGATCTGGCAAAGTAAAG+GGG - chr2_2:64657909-64657928 None:intergenic 35.0%
CCTATGGTGTATAGGATTAA+AGG - chr2_2:64658471-64658490 None:intergenic 35.0%
CCTTTAATCCTATACACCAT+AGG + chr2_2:64658468-64658487 Msa0264710:intron 35.0%
AAACACGTTGAAAACGACAA+AGG + chr2_2:64658507-64658526 Msa0264710:intron 35.0%
! TTTTTCTTACCATGCCTAAG+AGG - chr2_2:64658551-64658570 None:intergenic 35.0%
! GTTTCACACAATGCAAGTTT+TGG + chr2_2:64658659-64658678 Msa0264710:intron 35.0%
! TAGTGTGAAAAGGGAAGTAT+GGG - chr2_2:64658751-64658770 None:intergenic 35.0%
ACACATTACAAGAGAAAGCA+TGG + chr2_2:64659350-64659369 Msa0264710:CDS 35.0%
AGAAAAACTGTGGGAAACTT+TGG + chr2_2:64659441-64659460 Msa0264710:CDS 35.0%
!! CATATCAAGGCTTTTGGAAA+TGG + chr2_2:64659512-64659531 Msa0264710:CDS 35.0%
GGAAATGGACATAAAGCTTA+TGG + chr2_2:64659527-64659546 Msa0264710:CDS 35.0%
CAAGATCAAGATGATGAACA+TGG + chr2_2:64659569-64659588 Msa0264710:CDS 35.0%
! CTTCATGTTTTGTAGGGCTT+AGG - chr2_2:64657377-64657396 None:intergenic 40.0%
TAGATGCAAAGCCACAGTAA+CGG - chr2_2:64657490-64657509 None:intergenic 40.0%
! TTACTGTGGCTTTGCATCTA+GGG + chr2_2:64657490-64657509 Msa0264710:CDS 40.0%
!! CCCCTGCTAATTTTATTTGG+TGG - chr2_2:64657603-64657622 None:intergenic 40.0%
AAATTAGCAGGGGTCAGTAT+TGG + chr2_2:64657610-64657629 Msa0264710:CDS 40.0%
!!! GGCTCATTTTTTACATGCTG+TGG + chr2_2:64657962-64657981 Msa0264710:intron 40.0%
GGGAAGACATAAAATGAGAC+AGG + chr2_2:64658291-64658310 Msa0264710:intron 40.0%
AACTCTAGTACAAACACGCA+TGG + chr2_2:64658329-64658348 Msa0264710:intron 40.0%
TCTTAGTCCCTATGGTGTAT+AGG - chr2_2:64658479-64658498 None:intergenic 40.0%
CATATACATCCTCTTAGGCA+TGG + chr2_2:64658539-64658558 Msa0264710:intron 40.0%
GTAGTGTGAAAAGGGAAGTA+TGG - chr2_2:64658752-64658771 None:intergenic 40.0%
TGTGTTCCTCTTAGAGATTC+TGG - chr2_2:64659224-64659243 None:intergenic 40.0%
CAGGTGCACAACAATAACAT+GGG - chr2_2:64659268-64659287 None:intergenic 40.0%
TCAATGTTGTTCTTGCATCC+AGG - chr2_2:64659287-64659306 None:intergenic 40.0%
!! TCTTTGAGTGGTTTTGCTCT+TGG - chr2_2:64659314-64659333 None:intergenic 40.0%
! TGCAAAGCATTTGCAGTAAG+AGG + chr2_2:64659401-64659420 Msa0264710:CDS 40.0%
AGAACTCACGAGAAAAACTG+TGG + chr2_2:64659431-64659450 Msa0264710:CDS 40.0%
GAACTCACGAGAAAAACTGT+GGG + chr2_2:64659432-64659451 Msa0264710:CDS 40.0%
GATCAAGATGATGAACATGG+TGG + chr2_2:64659572-64659591 Msa0264710:CDS 40.0%
CTATAAAGACAAGACAGCTG+TGG + chr2_2:64659656-64659675 Msa0264710:three_prime_UTR 40.0%
AAAGGAAGAGCTTCTCTTGG+AGG - chr2_2:64657348-64657367 None:intergenic 45.0%
AGCAAAGGAAGAGCTTCTCT+TGG - chr2_2:64657351-64657370 None:intergenic 45.0%
GTAGGGCTTAGGTTAAGCAA+AGG - chr2_2:64657366-64657385 None:intergenic 45.0%
! AGATGATGATGCCGTTACTG+TGG + chr2_2:64657476-64657495 Msa0264710:CDS 45.0%
! GTTACTGTGGCTTTGCATCT+AGG + chr2_2:64657489-64657508 Msa0264710:CDS 45.0%
TTAGAATCTGAGCAGGGGTA+GGG - chr2_2:64657638-64657657 None:intergenic 45.0%
ATTAGAATCTGAGCAGGGGT+AGG - chr2_2:64657639-64657658 None:intergenic 45.0%
ACCCCTGCTCAGATTCTAAT+CGG + chr2_2:64657639-64657658 Msa0264710:CDS 45.0%
ACCGATTAGAATCTGAGCAG+GGG - chr2_2:64657643-64657662 None:intergenic 45.0%
GACCGATTAGAATCTGAGCA+GGG - chr2_2:64657644-64657663 None:intergenic 45.0%
! AGAGGGCATGAAAACTGTGT+TGG - chr2_2:64657666-64657685 None:intergenic 45.0%
GTAGTTCGGAAGGCAAACAA+GGG - chr2_2:64658410-64658429 None:intergenic 45.0%
AGTAGTTCGGAAGGCAAACA+AGG - chr2_2:64658411-64658430 None:intergenic 45.0%
TAGATGCATATGTGGGGACA+TGG + chr2_2:64659179-64659198 Msa0264710:intron 45.0%
AAGGGACCAGAATCTCTAAG+AGG + chr2_2:64659215-64659234 Msa0264710:CDS 45.0%
CCAGGTGCACAACAATAACA+TGG - chr2_2:64659269-64659288 None:intergenic 45.0%
CCATGTTATTGTTGTGCACC+TGG + chr2_2:64659266-64659285 Msa0264710:CDS 45.0%
CATTTGCAGTAAGAGGTGAC+TGG + chr2_2:64659408-64659427 Msa0264710:CDS 45.0%
TCTCTTGGAGGTGGAGATGA+AGG - chr2_2:64657336-64657355 None:intergenic 50.0%
GGACCGATTAGAATCTGAGC+AGG - chr2_2:64657645-64657664 None:intergenic 50.0%
GGGAGTCTTAGCATTGCTGT+TGG - chr2_2:64659248-64659267 None:intergenic 50.0%
GGAAGAGCTTCTCTTGGAGG+TGG - chr2_2:64657345-64657364 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 64657164 64659796 64657164 ID=Msa0264710;Name=Msa0264710
chr2_2 mRNA 64657164 64659796 64657164 ID=Msa0264710-mRNA-1;Parent=Msa0264710;Name=Msa0264710-mRNA-1;_AED=0.01;_eAED=0.01;_QI=58|1|1|1|1|1|2|162|317
chr2_2 exon 64657164 64657722 64657164 ID=Msa0264710-mRNA-1:exon:20207;Parent=Msa0264710-mRNA-1
chr2_2 exon 64659182 64659796 64659182 ID=Msa0264710-mRNA-1:exon:20208;Parent=Msa0264710-mRNA-1
chr2_2 five_prime_UTR 64657164 64657221 64657164 ID=Msa0264710-mRNA-1:five_prime_utr;Parent=Msa0264710-mRNA-1
chr2_2 CDS 64657222 64657722 64657222 ID=Msa0264710-mRNA-1:cds;Parent=Msa0264710-mRNA-1
chr2_2 CDS 64659182 64659634 64659182 ID=Msa0264710-mRNA-1:cds;Parent=Msa0264710-mRNA-1
chr2_2 three_prime_UTR 64659635 64659796 64659635 ID=Msa0264710-mRNA-1:three_prime_utr;Parent=Msa0264710-mRNA-1
Gene Sequence

>Msa0264710

ATGAGTACTCATCCCTACTTCTCCAATGACTTCAATGGTTATTGGTTTGACCTAAATAACCCTCCATTCTATAATTTTCCTTATAGTAACAACATATCTTTTGCATCTTCTCCTTCATCTCCACCTCCAAGAGAAGCTCTTCCTTTGCTTAACCTAAGCCCTACAAAACATGAAGATCTTCTAGAATCTTCCTTTAGTTCCATGGAAATGATGAATATGAAGGAGAAAGAACTAAGCATATCATCAAATTCTTTAGATGATGATGCCGTTACTGTGGCTTTGCATCTAGGGCTTCCAAGTATAAGTTCATCTGATTTAGCTTCTTCAAATATTTACAAAGATGATGAAAAAGTAGTGACTGTTGATTCTTCTGAGTGTCCACCAAATAAAATTAGCAGGGGTCAGTATTGGATCCCTACCCCTGCTCAGATTCTAATCGGTCCAACACAGTTTTCATGCCCTCTTTGTTTCAAGACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAATATAGAAAGGGACCAGAATCTCTAAGAGGAACACAACCAACAGCAATGCTAAGACTCCCATGTTATTGTTGTGCACCTGGATGCAAGAACAACATTGATCATCCAAGAGCAAAACCACTCAAAGATTTTAGAACACTTCAAACACATTACAAGAGAAAGCATGGAATAAAGCCATTTATGTGTAGAAAGTGTTGCAAAGCATTTGCAGTAAGAGGTGACTGGAGAACTCACGAGAAAAACTGTGGGAAACTTTGGTATTGTTGTTGTGGGTCCGATTTTAAGCACAAAAGATCACTTAAAGATCATATCAAGGCTTTTGGAAATGGACATAAAGCTTATGGAATTGACGAATGTCTTGATCAAGATCAAGATGATGAACATGGTGGCTCTGAAATTGAGCAAGACAATGAATCTTTTCAGTCATAG

Protein sequence

>Msa0264710

MSTHPYFSNDFNGYWFDLNNPPFYNFPYSNNISFASSPSSPPPREALPLLNLSPTKHEDLLESSFSSMEMMNMKEKELSISSNSLDDDAVTVALHLGLPSISSSDLASSNIYKDDEKVVTVDSSECPPNKISRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCCCGSDFKHKRSLKDHIKAFGNGHKAYGIDECLDQDQDDEHGGSEIEQDNESFQS*