AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0302750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302750 MtrunA17_Chr2g0328921 99.054 317 1 1 1 317 1 315 0.0 655
Msa0302750 MtrunA17_Chr7g0258011 66.319 288 72 5 44 313 67 347 6.07e-133 381
Msa0302750 MtrunA17_Chr1g0173841 63.036 303 78 5 44 317 93 390 7.27e-133 383
Msa0302750 MtrunA17_Chr8g0352011 64.931 288 80 8 44 314 55 338 7.40e-127 365
Msa0302750 MtrunA17_Chr5g0422571 68.349 218 55 4 84 298 56 262 4.20e-108 316
Msa0302750 MtrunA17_Chr2g0321291 60.166 241 85 3 73 307 67 302 3.43e-105 310
Msa0302750 MtrunA17_Chr4g0026521 59.289 253 92 4 60 310 48 291 7.58e-103 303
Msa0302750 MtrunA17_Chr1g0198651 78.261 161 32 1 135 292 99 259 1.73e-95 284
Msa0302750 MtrunA17_Chr4g0053341 60.870 230 75 4 60 289 11 225 7.14e-94 278
Msa0302750 MtrunA17_Chr1g0200421 39.597 149 80 5 145 286 245 390 1.30e-25 106
Msa0302750 MtrunA17_Chr2g0320341 34.615 156 95 3 138 286 231 386 5.17e-22 95.5
Msa0302750 MtrunA17_Chr4g0029521 35.971 139 80 4 145 282 61 191 1.51e-19 89.0
Msa0302750 MtrunA17_Chr7g0268961 34.868 152 81 7 139 282 33 174 1.65e-19 89.0
Msa0302750 MtrunA17_Chr8g0342421 30.151 199 116 8 97 282 26 214 2.42e-19 88.6
Msa0302750 MtrunA17_Chr1g0199101 33.939 165 89 8 128 282 45 199 2.94e-19 88.2
Msa0302750 MtrunA17_Chr8g0382121 38.849 139 78 6 153 286 127 263 3.10e-19 86.7
Msa0302750 MtrunA17_Chr1g0151351 35.211 142 81 5 143 282 62 194 3.38e-19 87.8
Msa0302750 MtrunA17_Chr1g0181381 34.247 146 87 4 138 282 54 191 4.74e-19 87.4
Msa0302750 MtrunA17_Chr1g0185121 35.211 142 81 5 143 282 61 193 8.18e-19 86.7
Msa0302750 MtrunA17_Chr1g0163001 32.927 164 92 6 128 282 41 195 8.53e-19 86.7
Msa0302750 MtrunA17_Chr1g0210821 33.562 146 87 5 138 282 60 196 1.13e-18 86.7
Msa0302750 MtrunA17_Chr2g0326381 34.247 146 87 4 138 282 48 185 1.19e-18 85.9
Msa0302750 MtrunA17_Chr1g0191991 34.337 166 89 7 127 282 60 215 1.45e-18 86.3
Msa0302750 MtrunA17_Chr1g0162971 35.252 139 80 5 145 282 64 193 1.46e-18 85.9
Msa0302750 MtrunA17_Chr7g0263941 34.694 147 84 6 138 282 50 186 3.89e-18 84.3
Msa0302750 MtrunA17_Chr2g0330171 32.877 146 88 4 138 282 62 198 5.35e-18 84.3
Msa0302750 MtrunA17_Chr8g0373541 33.813 139 82 4 145 282 56 185 7.48e-18 84.0
Msa0302750 MtrunA17_Chr3g0123941 35.152 165 93 7 153 313 139 293 8.82e-18 82.8
Msa0302750 MtrunA17_Chr2g0324991 33.803 142 84 5 138 277 8 141 8.93e-17 76.3
Msa0302750 MtrunA17_Chr4g0040571 31.507 146 90 4 138 282 55 191 1.28e-16 80.1
Msa0302750 MtrunA17_Chr3g0141431 30.723 166 97 5 123 278 15 172 1.98e-16 79.3
Msa0302750 MtrunA17_Chr8g0375521 30.986 142 87 5 143 281 48 181 7.38e-13 68.9
Msa0302750 MtrunA17_Chr6g0479921 28.966 145 93 4 143 285 50 186 3.32e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0302750 AT1G51220.1 61.801 322 95 8 6 310 27 337 3.07e-131 377
Msa0302750 AT3G57670.1 61.059 321 73 5 44 317 67 382 2.69e-127 369
Msa0302750 AT3G20880.1 61.462 301 82 7 36 310 118 410 9.49e-123 358
Msa0302750 AT1G13290.1 68.269 208 50 4 88 293 52 245 5.10e-102 301
Msa0302750 AT1G34790.1 68.159 201 63 1 90 289 83 283 3.99e-100 297
Msa0302750 AT1G08290.1 72.571 175 41 2 113 286 148 316 1.65e-94 284
Msa0302750 AT1G34370.3 37.209 172 89 6 131 286 7 175 2.45e-26 105
Msa0302750 AT1G34370.2 39.735 151 79 5 145 286 238 385 5.12e-26 108
Msa0302750 AT1G34370.1 39.735 151 79 5 145 286 238 385 5.12e-26 108
Msa0302750 AT5G22890.1 38.994 159 83 7 142 290 209 363 8.24e-23 97.8
Msa0302750 AT2G02080.1 31.088 193 113 6 101 282 23 206 1.46e-20 92.4
Msa0302750 AT2G02080.4 31.088 193 113 6 101 282 23 206 1.46e-20 92.4
Msa0302750 AT2G02080.5 31.088 193 113 6 101 282 23 206 1.46e-20 92.4
Msa0302750 AT2G02080.3 31.088 193 113 6 101 282 23 206 1.46e-20 92.4
Msa0302750 AT1G14580.1 34.320 169 93 5 123 282 46 205 5.56e-20 90.5
Msa0302750 AT1G14580.2 34.320 169 93 5 123 282 46 205 5.56e-20 90.5
Msa0302750 AT1G14580.3 34.320 169 93 5 123 282 60 219 6.76e-20 90.5
Msa0302750 AT1G55110.3 30.455 220 123 8 73 282 17 216 1.68e-19 89.0
Msa0302750 AT1G55110.1 30.455 220 123 8 73 282 17 216 1.68e-19 89.0
Msa0302750 AT1G55110.2 30.455 220 123 8 73 282 17 216 1.68e-19 89.0
Msa0302750 AT5G03150.1 35.252 139 81 4 145 282 76 206 2.28e-19 89.0
Msa0302750 AT5G66730.1 29.843 191 111 7 105 282 4 184 4.62e-19 87.8
Msa0302750 AT2G02070.2 34.247 146 86 4 138 282 68 204 7.95e-19 87.4
Msa0302750 AT2G02070.1 34.247 146 86 4 138 282 68 204 7.95e-19 87.4
Msa0302750 AT2G02080.6 34.783 138 80 4 146 282 1 129 3.28e-18 85.1
Msa0302750 AT2G02080.2 34.783 138 80 4 146 282 1 129 3.28e-18 85.1
Msa0302750 AT1G03840.2 33.562 146 87 5 138 282 55 191 1.69e-17 83.2
Msa0302750 AT1G03840.1 33.562 146 87 5 138 282 57 193 1.78e-17 83.2
Msa0302750 AT5G44160.1 33.094 139 83 4 145 282 60 189 2.21e-17 82.8
Msa0302750 AT3G45260.2 35.252 139 81 4 145 282 62 192 2.65e-17 82.4
Msa0302750 AT3G45260.1 35.252 139 81 4 145 282 62 192 2.65e-17 82.4
Msa0302750 AT5G44160.2 33.094 139 83 4 145 282 21 150 3.09e-17 82.4
Msa0302750 AT5G60470.2 34.074 135 81 3 145 278 67 194 3.24e-17 82.4
Msa0302750 AT5G60470.3 34.074 135 81 3 145 278 63 190 3.32e-17 82.4
Msa0302750 AT5G60470.1 34.074 135 81 3 145 278 58 185 3.56e-17 82.0
Msa0302750 AT3G50700.1 32.192 146 89 4 138 282 50 186 1.48e-16 80.5
Msa0302750 AT4G02670.1 32.192 146 90 3 138 282 69 206 1.94e-16 79.7
Msa0302750 AT4G02670.2 32.192 146 90 3 138 282 71 208 2.05e-16 79.7
Msa0302750 AT3G13810.5 32.192 146 90 4 138 282 81 218 3.89e-16 79.3
Msa0302750 AT3G13810.4 32.192 146 90 4 138 282 86 223 4.07e-16 79.3
Msa0302750 AT3G13810.1 32.192 146 90 4 138 282 86 223 4.07e-16 79.3
Msa0302750 AT3G13810.2 32.192 146 90 4 138 282 87 224 4.12e-16 79.3
Msa0302750 AT3G13810.3 32.192 146 90 4 138 282 73 210 4.17e-16 79.3
Msa0302750 AT3G13810.6 32.192 146 90 4 138 282 67 204 4.65e-16 79.0

Find 71 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTGTTCCTCTTAGAGATTC+TGG 0.183675 2_3:-59594694 None:intergenic
CCAATGACTTCAATGGTTAT+TGG 0.191789 2_3:+59592716 Msa0302750:CDS
CAACACTTTCTACACATAAA+TGG 0.204972 2_3:-59594853 None:intergenic
AAAGATCATATCAAGGCTTT+TGG 0.250816 2_3:+59594979 Msa0302750:CDS
GGAAATGGACATAAAGCTTA+TGG 0.262958 2_3:+59595000 Msa0302750:CDS
TATAGAATGGAGGGTTATTT+AGG 0.265203 2_3:-59592744 None:intergenic
GTTACTGTGGCTTTGCATCT+AGG 0.282488 2_3:+59592961 Msa0302750:CDS
AAAGATATGTTGTTACTATA+AGG 0.326372 2_3:-59592772 None:intergenic
CATGTTGTTGTATCTATTGA+AGG 0.358064 2_3:-59593169 None:intergenic
CATGATGATGATGAAAGATT+AGG 0.383112 2_3:-59592674 None:intergenic
CATCATTTCCATGGAACTAA+AGG 0.398872 2_3:-59592884 None:intergenic
TGATATGATGATAGTGGAAA+AGG 0.399989 2_3:-59592637 None:intergenic
AACTTTGGTATTGTTGTTGT+GGG 0.402964 2_3:+59594929 Msa0302750:CDS
CCAATAACCATTGAAGTCAT+TGG 0.409520 2_3:-59592716 None:intergenic
TGCAAAGCATTTGCAGTAAG+AGG 0.436467 2_3:+59594874 Msa0302750:CDS
AGAATCTTCCTTTAGTTCCA+TGG 0.448392 2_3:+59592876 Msa0302750:CDS
CTTCATATTCATCATTTCCA+TGG 0.449667 2_3:-59592893 None:intergenic
TTACTGTGGCTTTGCATCTA+GGG 0.458041 2_3:+59592962 Msa0302750:CDS
AAACTTTGGTATTGTTGTTG+TGG 0.458245 2_3:+59594928 Msa0302750:CDS
GTCCACCAAATAAAATTAGC+AGG 0.460803 2_3:+59593070 Msa0302750:CDS
GATATATGATATGATGATAG+TGG 0.464498 2_3:-59592643 None:intergenic
CCATGTTATTGTTGTGCACC+TGG 0.466023 2_3:+59594739 Msa0302750:CDS
ATTGAAGTCATTGGAGAAGT+AGG 0.466777 2_3:-59592707 None:intergenic
ACCCCTGCTCAGATTCTAAT+CGG 0.468227 2_3:+59593111 Msa0302750:CDS
TCTCTTGGAGGTGGAGATGA+AGG 0.479256 2_3:-59592805 None:intergenic
AAAGGAAGAGCTTCTCTTGG+AGG 0.486389 2_3:-59592817 None:intergenic
AAATCAGATGAACTTATACT+TGG 0.487140 2_3:-59592988 None:intergenic
AAAATATATAGATGCATATG+TGG 0.490811 2_3:+59594644 Msa0302750:intron
AGCAAAGGAAGAGCTTCTCT+TGG 0.490887 2_3:-59592820 None:intergenic
TACTTCTCCAATGACTTCAA+TGG 0.492298 2_3:+59592709 Msa0302750:CDS
GATATGATGATAGTGGAAAA+GGG 0.496004 2_3:-59592636 None:intergenic
TTGAAGGTCTTGAAACAAAG+AGG 0.499110 2_3:-59593153 None:intergenic
AAATTAGCAGGGGTCAGTAT+TGG 0.506191 2_3:+59593082 Msa0302750:CDS
TAAGGAAAATTATAGAATGG+AGG 0.508828 2_3:-59592754 None:intergenic
GGACCGATTAGAATCTGAGC+AGG 0.523985 2_3:-59593114 None:intergenic
CATGGAAATGATGAATATGA+AGG 0.524476 2_3:+59592894 Msa0302750:CDS
GGAAGAGCTTCTCTTGGAGG+TGG 0.534319 2_3:-59592814 None:intergenic
ATCACTTAAAGATCATATCA+AGG 0.535427 2_3:+59594972 Msa0302750:CDS
ACATGGATCACAATATAGAA+AGG 0.537364 2_3:+59594669 Msa0302750:CDS
CTATAAGGAAAATTATAGAA+TGG 0.547263 2_3:-59592757 None:intergenic
CCAGGTGCACAACAATAACA+TGG 0.547993 2_3:-59594739 None:intergenic
AAATATATAGATGCATATGT+GGG 0.547995 2_3:+59594645 Msa0302750:intron
ATTAGAATCTGAGCAGGGGT+AGG 0.550899 2_3:-59593108 None:intergenic
AAGGAAAATTATAGAATGGA+GGG 0.551334 2_3:-59592753 None:intergenic
TTGAAGTCATTGGAGAAGTA+GGG 0.551474 2_3:-59592706 None:intergenic
TCAATGTTGTTCTTGCATCC+AGG 0.558572 2_3:-59594757 None:intergenic
AGAGGGCATGAAAACTGTGT+TGG 0.560971 2_3:-59593135 None:intergenic
CATGGATCACAATATAGAAA+GGG 0.565142 2_3:+59594670 Msa0302750:CDS
ACACATTACAAGAGAAAGCA+TGG 0.565234 2_3:+59594823 Msa0302750:CDS
GGGAGTCTTAGCATTGCTGT+TGG 0.566939 2_3:-59594718 None:intergenic
TTAGAATCTGAGCAGGGGTA+GGG 0.569587 2_3:-59593107 None:intergenic
TAGATGCATATGTGGGGACA+TGG 0.582440 2_3:+59594652 Msa0302750:intron
AAGGGACCAGAATCTCTAAG+AGG 0.583893 2_3:+59594688 Msa0302750:CDS
TCCACCAAATAAAATTAGCA+GGG 0.584942 2_3:+59593071 Msa0302750:CDS
ATATATACTCAGATATGTTG+TGG 0.592325 2_3:+59595247 Msa0302750:three_prime_UTR
TGATGATGAAAGATTAGGAA+AGG 0.598905 2_3:-59592669 None:intergenic
AGTGTTCTAAAATCTTTGAG+TGG 0.612744 2_3:-59594796 None:intergenic
TGAAGGTCTTGAAACAAAGA+GGG 0.613383 2_3:-59593152 None:intergenic
GTAGGGCTTAGGTTAAGCAA+AGG 0.619991 2_3:-59592835 None:intergenic
GACCGATTAGAATCTGAGCA+GGG 0.623713 2_3:-59593113 None:intergenic
CATTTGCAGTAAGAGGTGAC+TGG 0.624837 2_3:+59594881 Msa0302750:CDS
AGATGATGATGCCGTTACTG+TGG 0.634808 2_3:+59592948 Msa0302750:CDS
CAATAGATACAACAACATGC+AGG 0.643534 2_3:+59593173 Msa0302750:CDS
TAGATGCAAAGCCACAGTAA+CGG 0.646015 2_3:-59592959 None:intergenic
CTATAAAGACAAGACAGCTG+TGG 0.651073 2_3:+59595129 Msa0302750:three_prime_UTR
CAAGATCAAGATGATGAACA+TGG 0.669051 2_3:+59595042 Msa0302750:CDS
AATATATAGATGCATATGTG+GGG 0.677061 2_3:+59594646 Msa0302750:intron
CCACCAAATAAAATTAGCAG+GGG 0.685279 2_3:+59593072 Msa0302750:CDS
ACCGATTAGAATCTGAGCAG+GGG 0.690964 2_3:-59593112 None:intergenic
CAGGTGCACAACAATAACAT+GGG 0.695885 2_3:-59594738 None:intergenic
GATCAAGATGATGAACATGG+TGG 0.762207 2_3:+59595045 Msa0302750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATACAAAAATATAATTGA+AGG - chr2_3:59593637-59593656 None:intergenic 10.0%
!! ATTCTATATTAGTAAATTTA+GGG + chr2_3:59594485-59594504 Msa0302750:intron 10.0%
!! AAGAATTTAAAGAAAGAAAA+AGG + chr2_3:59593326-59593345 Msa0302750:intron 15.0%
!!! TTTTTGTATGTTTGTAATTT+AGG + chr2_3:59593540-59593559 Msa0302750:intron 15.0%
!!! TTTTGTATGTTTGTAATTTA+GGG + chr2_3:59593541-59593560 Msa0302750:intron 15.0%
!! TAAAATGTATATAAAAGGAA+AGG - chr2_3:59593602-59593621 None:intergenic 15.0%
!! AGAGATAAAATGTATATAAA+AGG - chr2_3:59593607-59593626 None:intergenic 15.0%
!! TGTATTAGATAAAAATTTGA+TGG + chr2_3:59593650-59593669 Msa0302750:intron 15.0%
!!! GCTATTTATGTTTATTTTTA+TGG - chr2_3:59593848-59593867 None:intergenic 15.0%
!! AAACCATGTATTTATTATAT+TGG - chr2_3:59594069-59594088 None:intergenic 15.0%
!!! AACTTACACAAATAAATTTT+TGG - chr2_3:59594175-59594194 None:intergenic 15.0%
!!! TTTTTTTTTAATGAGTACAA+GGG - chr2_3:59594386-59594405 None:intergenic 15.0%
!!! TTTTTTTTTTAATGAGTACA+AGG - chr2_3:59594387-59594406 None:intergenic 15.0%
!! TTTACTAATATAGAATCATT+AGG - chr2_3:59594481-59594500 None:intergenic 15.0%
!! GATTCTATATTAGTAAATTT+AGG + chr2_3:59594484-59594503 Msa0302750:intron 15.0%
!!! TTAGTTGATATTAATAGAAA+AGG - chr2_3:59594599-59594618 None:intergenic 15.0%
!! CTATAAGGAAAATTATAGAA+TGG - chr2_3:59592760-59592779 None:intergenic 20.0%
!! AAAGATATGTTGTTACTATA+AGG - chr2_3:59592775-59592794 None:intergenic 20.0%
!! ATTAGATAAAAATTTGATGG+AGG + chr2_3:59593653-59593672 Msa0302750:intron 20.0%
!! TTAGATAAAAATTTGATGGA+GGG + chr2_3:59593654-59593673 Msa0302750:intron 20.0%
!! AAAATTGACAATTGATATCT+AGG + chr2_3:59593682-59593701 Msa0302750:intron 20.0%
!! AAATTGACAATTGATATCTA+GGG + chr2_3:59593683-59593702 Msa0302750:intron 20.0%
!! TACTAGAGTTTGAAAAATTA+TGG - chr2_3:59593791-59593810 None:intergenic 20.0%
!! CATCCAATATAATAAATACA+TGG + chr2_3:59594063-59594082 Msa0302750:intron 20.0%
!!! TTTTTTTAGTAGTGTGAAAA+GGG - chr2_3:59594232-59594251 None:intergenic 20.0%
!!! ATTTTTTTAGTAGTGTGAAA+AGG - chr2_3:59594233-59594252 None:intergenic 20.0%
!!! CATTACAATTTTTTTTGGAA+GGG - chr2_3:59594353-59594372 None:intergenic 20.0%
!! CTTCCAAAAAAAATTGTAAT+GGG + chr2_3:59594352-59594371 Msa0302750:intron 20.0%
!!! AATCCCATTACAATTTTTTT+TGG - chr2_3:59594358-59594377 None:intergenic 20.0%
!!! ATATTAGTAAATTTAGGGTT+TGG + chr2_3:59594490-59594509 Msa0302750:intron 20.0%
!! AAACATTTGTCAATAAAACA+GGG + chr2_3:59594522-59594541 Msa0302750:intron 20.0%
!!! ACATATGCATCTATATATTT+TGG - chr2_3:59594645-59594664 None:intergenic 20.0%
!! AAAATATATAGATGCATATG+TGG + chr2_3:59594644-59594663 Msa0302750:intron 20.0%
!! AAATATATAGATGCATATGT+GGG + chr2_3:59594645-59594664 Msa0302750:intron 20.0%
! GATATATGATATGATGATAG+TGG - chr2_3:59592646-59592665 None:intergenic 25.0%
! AAGGAAAATTATAGAATGGA+GGG - chr2_3:59592756-59592775 None:intergenic 25.0%
! TAAGGAAAATTATAGAATGG+AGG - chr2_3:59592757-59592776 None:intergenic 25.0%
! AAATCAGATGAACTTATACT+TGG - chr2_3:59592991-59593010 None:intergenic 25.0%
! TAAAGGGGTAGAAAAATAAA+GGG - chr2_3:59593366-59593385 None:intergenic 25.0%
!!! GAAATTTTCTGAAAAAGAAG+AGG + chr2_3:59593413-59593432 Msa0302750:intron 25.0%
! TATATAAAAGGAAAGGAAAG+GGG - chr2_3:59593595-59593614 None:intergenic 25.0%
! GTATATAAAAGGAAAGGAAA+GGG - chr2_3:59593596-59593615 None:intergenic 25.0%
! TGTATATAAAAGGAAAGGAA+AGG - chr2_3:59593597-59593616 None:intergenic 25.0%
! TGTTAATGTTAACATCATCA+CGG + chr2_3:59593742-59593761 Msa0302750:intron 25.0%
! ATCCTAATAAAGAAGTAGTT+CGG - chr2_3:59593896-59593915 None:intergenic 25.0%
!!! TCATTTCAATTGTTTTACCA+CGG - chr2_3:59594284-59594303 None:intergenic 25.0%
!! TTAAACGTTTTTCTTCAAAG+TGG + chr2_3:59594304-59594323 Msa0302750:intron 25.0%
!!! CCATTACAATTTTTTTTGGA+AGG - chr2_3:59594354-59594373 None:intergenic 25.0%
! CCTTCCAAAAAAAATTGTAA+TGG + chr2_3:59594351-59594370 Msa0302750:intron 25.0%
! CATAAAGATAGAATTAGAGA+TGG - chr2_3:59594440-59594459 None:intergenic 25.0%
! CAAACATTTGTCAATAAAAC+AGG + chr2_3:59594521-59594540 Msa0302750:intron 25.0%
! AATATATAGATGCATATGTG+GGG + chr2_3:59594646-59594665 Msa0302750:intron 25.0%
!! TGATCTTTTGTGCTTAAAAT+CGG - chr2_3:59594956-59594975 None:intergenic 25.0%
! ATCACTTAAAGATCATATCA+AGG + chr2_3:59594972-59594991 Msa0302750:CDS 25.0%
!! ATGTTTTGCACTAATTACAT+TGG + chr2_3:59595154-59595173 Msa0302750:three_prime_UTR 25.0%
!! GATATGATGATAGTGGAAAA+GGG - chr2_3:59592639-59592658 None:intergenic 30.0%
!! TGATATGATGATAGTGGAAA+AGG - chr2_3:59592640-59592659 None:intergenic 30.0%
! TGATGATGAAAGATTAGGAA+AGG - chr2_3:59592672-59592691 None:intergenic 30.0%
! CATGATGATGATGAAAGATT+AGG - chr2_3:59592677-59592696 None:intergenic 30.0%
TATAGAATGGAGGGTTATTT+AGG - chr2_3:59592747-59592766 None:intergenic 30.0%
! GAAGATCTTCATGTTTTGTA+GGG - chr2_3:59592855-59592874 None:intergenic 30.0%
! AGAAGATCTTCATGTTTTGT+AGG - chr2_3:59592856-59592875 None:intergenic 30.0%
CTTCATATTCATCATTTCCA+TGG - chr2_3:59592896-59592915 None:intergenic 30.0%
CATGGAAATGATGAATATGA+AGG + chr2_3:59592894-59592913 Msa0302750:CDS 30.0%
TCCACCAAATAAAATTAGCA+GGG + chr2_3:59593071-59593090 Msa0302750:CDS 30.0%
CATGTTGTTGTATCTATTGA+AGG - chr2_3:59593172-59593191 None:intergenic 30.0%
! TTCTTTTACCTGAGTATGAA+TGG - chr2_3:59593222-59593241 None:intergenic 30.0%
ATGACATAAATTGAAAGCTG+TGG + chr2_3:59593281-59593300 Msa0302750:intron 30.0%
GTAAAGGGGTAGAAAAATAA+AGG - chr2_3:59593367-59593386 None:intergenic 30.0%
TTAAGATCTGGCAAAGTAAA+GGG - chr2_3:59593382-59593401 None:intergenic 30.0%
ATTAAGATCTGGCAAAGTAA+AGG - chr2_3:59593383-59593402 None:intergenic 30.0%
CCTCAAAAGTAATTAAGATC+TGG - chr2_3:59593394-59593413 None:intergenic 30.0%
!! CCAGATCTTAATTACTTTTG+AGG + chr2_3:59593391-59593410 Msa0302750:intron 30.0%
GTTAATGTTAACATCATCAC+GGG + chr2_3:59593743-59593762 Msa0302750:intron 30.0%
TAATAAAGAAGTAGTTCGGA+AGG - chr2_3:59593892-59593911 None:intergenic 30.0%
TTCCGAACTACTTCTTTATT+AGG + chr2_3:59593891-59593910 Msa0302750:intron 30.0%
GAAAAGGTGACAATATATGT+AGG - chr2_3:59593921-59593940 None:intergenic 30.0%
GTGTATAGGATTAAAGGAAA+AGG - chr2_3:59593937-59593956 None:intergenic 30.0%
CTTTAATCCTATACACCATA+GGG + chr2_3:59593941-59593960 Msa0302750:intron 30.0%
! CAATTATTTCTTAGTCCCTA+TGG - chr2_3:59593959-59593978 None:intergenic 30.0%
TAAGAGGATGTATATGATCT+TGG - chr2_3:59594007-59594026 None:intergenic 30.0%
AAGATCATATACATCCTCTT+AGG + chr2_3:59594006-59594025 Msa0302750:intron 30.0%
CAAAAACAAAATTGAATCCG+TGG + chr2_3:59594264-59594283 Msa0302750:intron 30.0%
GAAGGGACATTACAAAATAT+TGG - chr2_3:59594336-59594355 None:intergenic 30.0%
ATCTTTATGTGTTACAGAGT+TGG + chr2_3:59594451-59594470 Msa0302750:intron 30.0%
TCTTTATGTGTTACAGAGTT+GGG + chr2_3:59594452-59594471 Msa0302750:intron 30.0%
ACATGGATCACAATATAGAA+AGG + chr2_3:59594669-59594688 Msa0302750:CDS 30.0%
CATGGATCACAATATAGAAA+GGG + chr2_3:59594670-59594689 Msa0302750:CDS 30.0%
!! AGTGTTCTAAAATCTTTGAG+TGG - chr2_3:59594799-59594818 None:intergenic 30.0%
CAACACTTTCTACACATAAA+TGG - chr2_3:59594856-59594875 None:intergenic 30.0%
! AAACTTTGGTATTGTTGTTG+TGG + chr2_3:59594928-59594947 Msa0302750:CDS 30.0%
! AACTTTGGTATTGTTGTTGT+GGG + chr2_3:59594929-59594948 Msa0302750:CDS 30.0%
! AAAGATCATATCAAGGCTTT+TGG + chr2_3:59594979-59594998 Msa0302750:CDS 30.0%
TTGAAGTCATTGGAGAAGTA+GGG - chr2_3:59592709-59592728 None:intergenic 35.0%
ATTGAAGTCATTGGAGAAGT+AGG - chr2_3:59592710-59592729 None:intergenic 35.0%
TACTTCTCCAATGACTTCAA+TGG + chr2_3:59592709-59592728 Msa0302750:CDS 35.0%
CCAATAACCATTGAAGTCAT+TGG - chr2_3:59592719-59592738 None:intergenic 35.0%
CCAATGACTTCAATGGTTAT+TGG + chr2_3:59592716-59592735 Msa0302750:CDS 35.0%
! AGAATCTTCCTTTAGTTCCA+TGG + chr2_3:59592876-59592895 Msa0302750:CDS 35.0%
CATCATTTCCATGGAACTAA+AGG - chr2_3:59592887-59592906 None:intergenic 35.0%
GTCCACCAAATAAAATTAGC+AGG + chr2_3:59593070-59593089 Msa0302750:CDS 35.0%
CCACCAAATAAAATTAGCAG+GGG + chr2_3:59593072-59593091 Msa0302750:CDS 35.0%
! TGACCCCTGCTAATTTTATT+TGG - chr2_3:59593078-59593097 None:intergenic 35.0%
TGAAGGTCTTGAAACAAAGA+GGG - chr2_3:59593155-59593174 None:intergenic 35.0%
TTGAAGGTCTTGAAACAAAG+AGG - chr2_3:59593156-59593175 None:intergenic 35.0%
CAATAGATACAACAACATGC+AGG + chr2_3:59593173-59593192 Msa0302750:CDS 35.0%
! ACTCTTTTCCATTCATACTC+AGG + chr2_3:59593211-59593230 Msa0302750:intron 35.0%
TAAGATCTGGCAAAGTAAAG+GGG - chr2_3:59593381-59593400 None:intergenic 35.0%
CCTATGGTGTATAGGATTAA+AGG - chr2_3:59593943-59593962 None:intergenic 35.0%
CCTTTAATCCTATACACCAT+AGG + chr2_3:59593940-59593959 Msa0302750:intron 35.0%
AAACACGTTGAAAACGACAA+AGG + chr2_3:59593979-59593998 Msa0302750:intron 35.0%
! TTTTTCTTACCATGCCTAAG+AGG - chr2_3:59594023-59594042 None:intergenic 35.0%
! GTTTCACACAATGCAAGTTT+TGG + chr2_3:59594131-59594150 Msa0302750:intron 35.0%
! TAGTGTGAAAAGGGAAGTAT+GGG - chr2_3:59594223-59594242 None:intergenic 35.0%
ACACATTACAAGAGAAAGCA+TGG + chr2_3:59594823-59594842 Msa0302750:CDS 35.0%
AGAAAAACTGTGGGAAACTT+TGG + chr2_3:59594914-59594933 Msa0302750:CDS 35.0%
!! CATATCAAGGCTTTTGGAAA+TGG + chr2_3:59594985-59595004 Msa0302750:CDS 35.0%
GGAAATGGACATAAAGCTTA+TGG + chr2_3:59595000-59595019 Msa0302750:CDS 35.0%
CAAGATCAAGATGATGAACA+TGG + chr2_3:59595042-59595061 Msa0302750:CDS 35.0%
! CTTCATGTTTTGTAGGGCTT+AGG - chr2_3:59592849-59592868 None:intergenic 40.0%
TAGATGCAAAGCCACAGTAA+CGG - chr2_3:59592962-59592981 None:intergenic 40.0%
! TTACTGTGGCTTTGCATCTA+GGG + chr2_3:59592962-59592981 Msa0302750:CDS 40.0%
!! CCCCTGCTAATTTTATTTGG+TGG - chr2_3:59593075-59593094 None:intergenic 40.0%
AAATTAGCAGGGGTCAGTAT+TGG + chr2_3:59593082-59593101 Msa0302750:CDS 40.0%
!!! GGCTCATTTTTTACATGCTG+TGG + chr2_3:59593434-59593453 Msa0302750:intron 40.0%
GGGAAGACATAAAATGAGAC+AGG + chr2_3:59593763-59593782 Msa0302750:intron 40.0%
AACTCTAGTACAAACACGCA+TGG + chr2_3:59593801-59593820 Msa0302750:intron 40.0%
TCTTAGTCCCTATGGTGTAT+AGG - chr2_3:59593951-59593970 None:intergenic 40.0%
CATATACATCCTCTTAGGCA+TGG + chr2_3:59594011-59594030 Msa0302750:intron 40.0%
GTAGTGTGAAAAGGGAAGTA+TGG - chr2_3:59594224-59594243 None:intergenic 40.0%
TGTGTTCCTCTTAGAGATTC+TGG - chr2_3:59594697-59594716 None:intergenic 40.0%
CAGGTGCACAACAATAACAT+GGG - chr2_3:59594741-59594760 None:intergenic 40.0%
TCAATGTTGTTCTTGCATCC+AGG - chr2_3:59594760-59594779 None:intergenic 40.0%
!! TCTTTGAGTGGTTTTGCTCT+TGG - chr2_3:59594787-59594806 None:intergenic 40.0%
! TGCAAAGCATTTGCAGTAAG+AGG + chr2_3:59594874-59594893 Msa0302750:CDS 40.0%
AGAACTCACGAGAAAAACTG+TGG + chr2_3:59594904-59594923 Msa0302750:CDS 40.0%
GAACTCACGAGAAAAACTGT+GGG + chr2_3:59594905-59594924 Msa0302750:CDS 40.0%
GATCAAGATGATGAACATGG+TGG + chr2_3:59595045-59595064 Msa0302750:CDS 40.0%
CTATAAAGACAAGACAGCTG+TGG + chr2_3:59595129-59595148 Msa0302750:three_prime_UTR 40.0%
AAAGGAAGAGCTTCTCTTGG+AGG - chr2_3:59592820-59592839 None:intergenic 45.0%
AGCAAAGGAAGAGCTTCTCT+TGG - chr2_3:59592823-59592842 None:intergenic 45.0%
GTAGGGCTTAGGTTAAGCAA+AGG - chr2_3:59592838-59592857 None:intergenic 45.0%
! AGATGATGATGCCGTTACTG+TGG + chr2_3:59592948-59592967 Msa0302750:CDS 45.0%
! GTTACTGTGGCTTTGCATCT+AGG + chr2_3:59592961-59592980 Msa0302750:CDS 45.0%
TTAGAATCTGAGCAGGGGTA+GGG - chr2_3:59593110-59593129 None:intergenic 45.0%
ATTAGAATCTGAGCAGGGGT+AGG - chr2_3:59593111-59593130 None:intergenic 45.0%
ACCCCTGCTCAGATTCTAAT+CGG + chr2_3:59593111-59593130 Msa0302750:CDS 45.0%
ACCGATTAGAATCTGAGCAG+GGG - chr2_3:59593115-59593134 None:intergenic 45.0%
GACCGATTAGAATCTGAGCA+GGG - chr2_3:59593116-59593135 None:intergenic 45.0%
! AGAGGGCATGAAAACTGTGT+TGG - chr2_3:59593138-59593157 None:intergenic 45.0%
GTAGTTCGGAAGGCAAACAA+GGG - chr2_3:59593882-59593901 None:intergenic 45.0%
AGTAGTTCGGAAGGCAAACA+AGG - chr2_3:59593883-59593902 None:intergenic 45.0%
TAGATGCATATGTGGGGACA+TGG + chr2_3:59594652-59594671 Msa0302750:intron 45.0%
AAGGGACCAGAATCTCTAAG+AGG + chr2_3:59594688-59594707 Msa0302750:CDS 45.0%
CCAGGTGCACAACAATAACA+TGG - chr2_3:59594742-59594761 None:intergenic 45.0%
CCATGTTATTGTTGTGCACC+TGG + chr2_3:59594739-59594758 Msa0302750:CDS 45.0%
CATTTGCAGTAAGAGGTGAC+TGG + chr2_3:59594881-59594900 Msa0302750:CDS 45.0%
TCTCTTGGAGGTGGAGATGA+AGG - chr2_3:59592808-59592827 None:intergenic 50.0%
GGACCGATTAGAATCTGAGC+AGG - chr2_3:59593117-59593136 None:intergenic 50.0%
GGGAGTCTTAGCATTGCTGT+TGG - chr2_3:59594721-59594740 None:intergenic 50.0%
GGAAGAGCTTCTCTTGGAGG+TGG - chr2_3:59592817-59592836 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 59592636 59595269 59592636 ID=Msa0302750;Name=Msa0302750
chr2_3 mRNA 59592636 59595269 59592636 ID=Msa0302750-mRNA-1;Parent=Msa0302750;Name=Msa0302750-mRNA-1;_AED=0.01;_eAED=0.01;_QI=58|1|1|1|1|1|2|162|317
chr2_3 exon 59592636 59593194 59592636 ID=Msa0302750-mRNA-1:exon:19388;Parent=Msa0302750-mRNA-1
chr2_3 exon 59594655 59595269 59594655 ID=Msa0302750-mRNA-1:exon:19389;Parent=Msa0302750-mRNA-1
chr2_3 five_prime_UTR 59592636 59592693 59592636 ID=Msa0302750-mRNA-1:five_prime_utr;Parent=Msa0302750-mRNA-1
chr2_3 CDS 59592694 59593194 59592694 ID=Msa0302750-mRNA-1:cds;Parent=Msa0302750-mRNA-1
chr2_3 CDS 59594655 59595107 59594655 ID=Msa0302750-mRNA-1:cds;Parent=Msa0302750-mRNA-1
chr2_3 three_prime_UTR 59595108 59595269 59595108 ID=Msa0302750-mRNA-1:three_prime_utr;Parent=Msa0302750-mRNA-1
Gene Sequence

>Msa0302750

ATGAGTACTCATCCCTACTTCTCCAATGACTTCAATGGTTATTGGTTTGACCTAAATAACCCTCCATTCTATAATTTTCCTTATAGTAACAACATATCTTTTGCATCTTCTCCTTCATCTCCACCTCCAAGAGAAGCTCTTCCTTTGCTTAACCTAAGCCCTACAAAACATGAAGATCTTCTAGAATCTTCCTTTAGTTCCATGGAAATGATGAATATGAAGGAGAAAGAACTAAGCATATCATCAAATTCTTTAGATGATGATGCCGTTACTGTGGCTTTGCATCTAGGGCTTCCAAGTATAAGTTCATCTGATTTAGCTTCTTCAAATATTTACAAAGATGATGAAAAAGTAGTGACTGTTGATTCTTCTGAGTGTCCACCAAATAAAATTAGCAGGGGTCAGTATTGGATCCCTACCCCTGCTCAGATTCTAATCGGTCCAACACAGTTTTCATGCCCTCTTTGTTTCAAGACCTTCAATAGATACAACAACATGCAGATGCATATGTGGGGACATGGATCACAATATAGAAAGGGACCAGAATCTCTAAGAGGAACACAACCAACAGCAATGCTAAGACTCCCATGTTATTGTTGTGCACCTGGATGCAAGAACAACATTGATCATCCAAGAGCAAAACCACTCAAAGATTTTAGAACACTTCAAACACATTACAAGAGAAAGCATGGAATAAAGCCATTTATGTGTAGAAAGTGTTGCAAAGCATTTGCAGTAAGAGGTGACTGGAGAACTCACGAGAAAAACTGTGGGAAACTTTGGTATTGTTGTTGTGGGTCCGATTTTAAGCACAAAAGATCACTTAAAGATCATATCAAGGCTTTTGGAAATGGACATAAAGCTTATGGAATTGACGAATGTCTTGATCAAGATCAAGATGATGAACATGGTGGCTCTGAAATTGAGCAAGACAATGAATCTTTTCAGTCATAG

Protein sequence

>Msa0302750

MSTHPYFSNDFNGYWFDLNNPPFYNFPYSNNISFASSPSSPPPREALPLLNLSPTKHEDLLESSFSSMEMMNMKEKELSISSNSLDDDAVTVALHLGLPSISSSDLASSNIYKDDEKVVTVDSSECPPNKISRGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCCCGSDFKHKRSLKDHIKAFGNGHKAYGIDECLDQDQDDEHGGSEIEQDNESFQS*