AlfalfaGEDB | Msa0609490

M. sativa cultivar zhongmu-4 / Msa0609490

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0609490	XP_013456732.1	93.548	124	6	1	1	124	1	122	1.51e-77	234

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0089980	Msa0609490	-0.815466	9.114619e-52	-8.615850e-47
Msa0090010	Msa0609490	-0.813294	2.752547e-51	-8.615850e-47
Msa0094780	Msa0609490	-0.821117	4.788501e-53	-8.615850e-47
Msa0241610	Msa0609490	-0.828218	1.015994e-54	-8.615850e-47
Msa0263230	Msa0609490	-0.804769	1.842862e-49	-8.615850e-47
Msa0279690	Msa0609490	-0.809346	1.979688e-50	-8.615850e-47
Msa0483100	Msa0609490	-0.819745	9.884759e-53	-8.615850e-47
Msa0519760	Msa0609490	-0.801695	7.976228e-49	-8.615850e-47
Msa0519840	Msa0609490	-0.808345	3.242360e-50	-8.615850e-47
Msa0555860	Msa0609490	0.929371	7.651203e-93	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0609490	MtrunA17_Chr4g0042141	93.548	124	6	1	1	124	1	122	1.39e-81	234

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 70 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGGTGGAGAGAGGGAA+AGG	0.531145	4_2:+56842608	None:intergenic
AAAGATTCCGACGTGTGCCG+CGG	0.627143	4_2:+56842530	None:intergenic
AAATGCACGGTGGCTTCTGC+TGG	0.405731	4_2:-56842356	Msa0609490:CDS
AAGAAGAAGAGTGGTGCTCG+TGG	0.645513	4_2:-56842323	Msa0609490:CDS
AAGAAGAGTGGTGCTCGTGG+TGG	0.707624	4_2:-56842320	Msa0609490:CDS
AATGGCGTTGGAGAGAATGC+TGG	0.629506	4_2:+56841310	None:intergenic
ACGGAAGCCACAGCAACAAC+GGG	0.431180	4_2:+56842467	None:intergenic
ACTTTAATTTAATTACAAGG+TGG	0.668387	4_2:+56841208	None:intergenic
AGAATGAAAACGGTGGAGAG+AGG	0.606074	4_2:+56842602	None:intergenic
AGGGAAATAAGTTCCATTGA+AGG	0.502430	4_2:+56842662	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGAAATGATGAGAGAAAAAA+TGG	+	chr4_2:56841168-56841187	None:intergenic	30.0%
ATCATTTCCAAATCCTTCAA+TGG	-	chr4_2:56841179-56841198	Msa0609490:three_prime_UTR	30.0%
ATAAGTTCCATTGAAGGATT+TGG	+	chr4_2:56841189-56841208	None:intergenic	30.0%
TTCGAATCTATGAAGAGATT+TGG	+	chr4_2:56841224-56841243	None:intergenic	30.0%
TCCGTTAAAACTCAAAAACT+AGG	+	chr4_2:56841621-56841640	None:intergenic	30.0%
TGCAATAGTACAAAACATAC+TGG	-	chr4_2:56841950-56841969	Msa0609490:intron	30.0%
CGTGTATACTTTCTATTGAT+AGG	+	chr4_2:56842091-56842110	None:intergenic	30.0%
ACAAAACAAAAAAGTGGTAG+AGG	+	chr4_2:56842675-56842694	None:intergenic	30.0%
GGAAATGATGAGAGAAAAAA+TGG	+	chr4_2:56841168-56841187	None:intergenic	30.0%
ATCATTTCCAAATCCTTCAA+TGG	-	chr4_2:56841179-56841198	Msa0609490:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	56841115	56842761	56841115	ID=Msa0609490;Name=Msa0609490
chr4_2	mRNA	56841115	56842761	56841115	ID=Msa0609490-mRNA-1;Parent=Msa0609490;Name=Msa0609490-mRNA-1;_AED=0.00;_eAED=0.00;_QI=170\|1\|1\|1\|1\|1\|2\|185\|124
chr4_2	exon	56841115	56841357	56841115	ID=Msa0609490-mRNA-1:exon:14739;Parent=Msa0609490-mRNA-1
chr4_2	exon	56842275	56842761	56842275	ID=Msa0609490-mRNA-1:exon:14738;Parent=Msa0609490-mRNA-1
chr4_2	five_prime_UTR	56842592	56842761	56842592	ID=Msa0609490-mRNA-1:five_prime_utr;Parent=Msa0609490-mRNA-1
chr4_2	CDS	56842275	56842591	56842275	ID=Msa0609490-mRNA-1:cds;Parent=Msa0609490-mRNA-1
chr4_2	CDS	56841300	56841357	56841300	ID=Msa0609490-mRNA-1:cds;Parent=Msa0609490-mRNA-1
chr4_2	three_prime_UTR	56841115	56841299	56841115	ID=Msa0609490-mRNA-1:three_prime_utr;Parent=Msa0609490-mRNA-1

Gene Sequence	>Msa0609490 ATGAGGTTTTTCTTGGAATTCGTTTCTTGTTGCGCATCGCCGCGGCACACGTCGGAATCTTTAGTTCCGGCGGAGGATGAAGGTAGGTGGCTAGTTCCGGCTCCCGTTGTTGCTGTGGCTTCCGTGAGGCGTCAAAATCGTAAGAGGAAGGTTGGTGCGCCGGATTGGAGGCCTTCGTTGGGGTCGATATCGGAGGATGTTATCGTACCGCAGAAATGCACGGTGGCTTCTGCTGGAAGGGAGGGGAAGAAGAAGAGTGGTGCTCGTGGTGGTGCTGGTAGGGTTTATCACCGGAGTTACAGCGAAGGTTATCACGGGTCATCTTCTATGCATATGATTATGCCAGCATTCTCTCCAACGCCATTCATGTTTTAA
Protein sequence	>Msa0609490 MRFFLEFVSCCASPRHTSESLVPAEDEGRWLVPAPVVAVASVRRQNRKRKVGAPDWRPSLGSISEDVIVPQKCTVASAGREGKKKSGARGGAGRVYHRSYSEGYHGSSSMHMIMPAFSPTPFMF*