Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279690 | GAU51219.1 | 86.134 | 476 | 57 | 3 | 1 | 468 | 1 | 475 | 0.0 | 802 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279690 | sp|Q94C59|PATL4_ARATH | 68.421 | 342 | 101 | 3 | 122 | 463 | 200 | 534 | 8.61e-176 | 506 |
| Msa0279690 | sp|Q94C59|PATL4_ARATH | 45.283 | 106 | 51 | 2 | 1 | 100 | 1 | 105 | 3.02e-11 | 68.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279690 | A0A2Z6PTY6 | 86.134 | 476 | 57 | 3 | 1 | 468 | 1 | 475 | 0.0 | 802 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0279690 | 0.828946 | 6.777060e-55 | -8.615850e-47 |
| Msa0001940 | Msa0279690 | 0.823750 | 1.170574e-53 | -8.615850e-47 |
| Msa0001960 | Msa0279690 | 0.818940 | 1.508167e-52 | -8.615850e-47 |
| Msa0002580 | Msa0279690 | 0.820374 | 7.095757e-53 | -8.615850e-47 |
| Msa0005890 | Msa0279690 | 0.861914 | 7.339778e-64 | -8.615850e-47 |
| Msa0017950 | Msa0279690 | 0.840240 | 9.793539e-58 | -8.615850e-47 |
| Msa0027280 | Msa0279690 | 0.835382 | 1.733315e-56 | -8.615850e-47 |
| Msa0048510 | Msa0279690 | 0.830546 | 2.762714e-55 | -8.615850e-47 |
| Msa0054690 | Msa0279690 | 0.826115 | 3.237896e-54 | -8.615850e-47 |
| Msa0077340 | Msa0279690 | 0.822692 | 2.067709e-53 | -8.615850e-47 |
| Msa0077560 | Msa0279690 | 0.804162 | 2.465855e-49 | -8.615850e-47 |
| Msa0081980 | Msa0279690 | 0.806115 | 9.619019e-50 | -8.615850e-47 |
| Msa0094780 | Msa0279690 | 0.855054 | 8.157456e-62 | -8.615850e-47 |
| Msa0098040 | Msa0279690 | 0.806132 | 9.540194e-50 | -8.615850e-47 |
| Msa0128460 | Msa0279690 | 0.800717 | 1.264565e-48 | -8.615850e-47 |
| Msa0133150 | Msa0279690 | 0.812196 | 4.787427e-51 | -8.615850e-47 |
| Msa0133280 | Msa0279690 | 0.819777 | 9.720147e-53 | -8.615850e-47 |
| Msa0140280 | Msa0279690 | 0.821687 | 3.536499e-53 | -8.615850e-47 |
| Msa0174290 | Msa0279690 | 0.801809 | 7.556354e-49 | -8.615850e-47 |
| Msa0175930 | Msa0279690 | 0.805798 | 1.121460e-49 | -8.615850e-47 |
| Msa0188610 | Msa0279690 | 0.801636 | 8.202285e-49 | -8.615850e-47 |
| Msa0190570 | Msa0279690 | 0.816893 | 4.372354e-52 | -8.615850e-47 |
| Msa0200050 | Msa0279690 | 0.804165 | 2.462580e-49 | -8.615850e-47 |
| Msa0225100 | Msa0279690 | 0.800218 | 1.597676e-48 | -8.615850e-47 |
| Msa0225860 | Msa0279690 | 0.848511 | 5.851118e-60 | -8.615850e-47 |
| Msa0241610 | Msa0279690 | 0.891733 | 3.032633e-74 | -8.615850e-47 |
| Msa0242590 | Msa0279690 | 0.847165 | 1.373953e-59 | -8.615850e-47 |
| Msa0244640 | Msa0279690 | 0.822064 | 2.892063e-53 | -8.615850e-47 |
| Msa0260510 | Msa0279690 | 0.811580 | 6.519600e-51 | -8.615850e-47 |
| Msa0266180 | Msa0279690 | 0.800014 | 1.757816e-48 | -8.615850e-47 |
| Msa0271880 | Msa0279690 | 0.805906 | 1.064838e-49 | -8.615850e-47 |
| Msa0279690 | Msa0280790 | 0.826455 | 2.687417e-54 | -8.615850e-47 |
| Msa0279690 | Msa0283330 | 0.800138 | 1.659049e-48 | -8.615850e-47 |
| Msa0279690 | Msa0287740 | 0.802450 | 5.578864e-49 | -8.615850e-47 |
| Msa0279690 | Msa0298470 | 0.842412 | 2.627828e-58 | -8.615850e-47 |
| Msa0279690 | Msa0307270 | 0.815587 | 8.562816e-52 | -8.615850e-47 |
| Msa0279690 | Msa0310850 | 0.808316 | 3.288667e-50 | -8.615850e-47 |
| Msa0279690 | Msa0321620 | 0.823208 | 1.567821e-53 | -8.615850e-47 |
| Msa0279690 | Msa0330380 | 0.822461 | 2.340402e-53 | -8.615850e-47 |
| Msa0279690 | Msa0337700 | 0.805632 | 1.215694e-49 | -8.615850e-47 |
| Msa0279690 | Msa0340500 | 0.818274 | 2.135027e-52 | -8.615850e-47 |
| Msa0279690 | Msa0361910 | 0.818967 | 1.486881e-52 | -8.615850e-47 |
| Msa0279690 | Msa0367690 | 0.806283 | 8.868384e-50 | -8.615850e-47 |
| Msa0279690 | Msa0369790 | 0.838923 | 2.154481e-57 | -8.615850e-47 |
| Msa0279690 | Msa0380670 | 0.809362 | 1.964764e-50 | -8.615850e-47 |
| Msa0279690 | Msa0428370 | 0.802683 | 4.994124e-49 | -8.615850e-47 |
| Msa0279690 | Msa0430300 | 0.815006 | 1.152860e-51 | -8.615850e-47 |
| Msa0279690 | Msa0436910 | 0.827799 | 1.281556e-54 | -8.615850e-47 |
| Msa0279690 | Msa0464000 | 0.837050 | 6.532472e-57 | -8.615850e-47 |
| Msa0279690 | Msa0472950 | 0.819900 | 9.107871e-53 | -8.615850e-47 |
| Msa0279690 | Msa0474730 | 0.804971 | 1.671743e-49 | -8.615850e-47 |
| Msa0279690 | Msa0483100 | 0.817037 | 4.057937e-52 | -8.615850e-47 |
| Msa0279690 | Msa0484380 | 0.803725 | 3.039253e-49 | -8.615850e-47 |
| Msa0279690 | Msa0509550 | 0.834159 | 3.521165e-56 | -8.615850e-47 |
| Msa0279690 | Msa0519750 | 0.811766 | 5.941544e-51 | -8.615850e-47 |
| Msa0279690 | Msa0519830 | 0.812353 | 4.425308e-51 | -8.615850e-47 |
| Msa0279690 | Msa0528570 | 0.832956 | 7.032421e-56 | -8.615850e-47 |
| Msa0279690 | Msa0529030 | 0.842955 | 1.884703e-58 | -8.615850e-47 |
| Msa0279690 | Msa0534390 | 0.817844 | 2.670310e-52 | -8.615850e-47 |
| Msa0279690 | Msa0534720 | 0.808793 | 2.601392e-50 | -8.615850e-47 |
| Msa0279690 | Msa0548470 | 0.847177 | 1.363650e-59 | -8.615850e-47 |
| Msa0279690 | Msa0555860 | -0.830714 | 2.514031e-55 | -8.615850e-47 |
| Msa0279690 | Msa0557460 | 0.813104 | 3.030046e-51 | -8.615850e-47 |
| Msa0279690 | Msa0567170 | 0.809812 | 1.572263e-50 | -8.615850e-47 |
| Msa0279690 | Msa0571290 | 0.864970 | 8.287795e-65 | -8.615850e-47 |
| Msa0279690 | Msa0580370 | 0.853542 | 2.230195e-61 | -8.615850e-47 |
| Msa0279690 | Msa0581470 | 0.834995 | 2.170108e-56 | -8.615850e-47 |
| Msa0279690 | Msa0597270 | 0.803348 | 3.638710e-49 | -8.615850e-47 |
| Msa0279690 | Msa0609490 | -0.809346 | 1.979688e-50 | -8.615850e-47 |
| Msa0279690 | Msa0611210 | 0.806796 | 6.911219e-50 | -8.615850e-47 |
| Msa0279690 | Msa0624900 | 0.817840 | 2.676467e-52 | -8.615850e-47 |
| Msa0279690 | Msa0626450 | 0.801723 | 7.872200e-49 | -8.615850e-47 |
| Msa0279690 | Msa0644410 | 0.831432 | 1.675110e-55 | -8.615850e-47 |
| Msa0279690 | Msa0658640 | 0.814075 | 1.852724e-51 | -8.615850e-47 |
| Msa0279690 | Msa0661150 | 0.815676 | 8.183660e-52 | -8.615850e-47 |
| Msa0279690 | Msa0664600 | 0.802354 | 5.836802e-49 | -8.615850e-47 |
| Msa0279690 | Msa0720410 | 0.838857 | 2.241385e-57 | -8.615850e-47 |
| Msa0279690 | Msa0721080 | 0.843607 | 1.262962e-58 | -8.615850e-47 |
| Msa0279690 | Msa0735780 | 0.832154 | 1.111076e-55 | -8.615850e-47 |
| Msa0279690 | Msa0741220 | 0.826449 | 2.696482e-54 | -8.615850e-47 |
| Msa0279690 | Msa0741650 | 0.800800 | 1.215848e-48 | -8.615850e-47 |
| Msa0279690 | Msa0761670 | 0.825869 | 3.703771e-54 | -8.615850e-47 |
| Msa0279690 | Msa0777750 | 0.810703 | 1.010147e-50 | -8.615850e-47 |
| Msa0279690 | Msa0792370 | 0.801980 | 6.970734e-49 | -8.615850e-47 |
| Msa0279690 | Msa0795870 | 0.862772 | 4.000205e-64 | -8.615850e-47 |
| Msa0279690 | Msa0815960 | 0.802214 | 6.237813e-49 | -8.615850e-47 |
| Msa0279690 | Msa0824450 | 0.816126 | 6.493976e-52 | -8.615850e-47 |
| Msa0279690 | Msa0829300 | 0.814270 | 1.678204e-51 | -8.615850e-47 |
| Msa0279690 | Msa0829330 | 0.821758 | 3.405766e-53 | -8.615850e-47 |
| Msa0279690 | Msa0833650 | 0.857421 | 1.651506e-62 | -8.615850e-47 |
| Msa0279690 | Msa0835490 | 0.814355 | 1.606715e-51 | -8.615850e-47 |
| Msa0279690 | Msa0861600 | 0.803804 | 2.927283e-49 | -8.615850e-47 |
| Msa0279690 | Msa0915520 | 0.808204 | 3.473317e-50 | -8.615850e-47 |
| Msa0279690 | Msa0967870 | 0.804423 | 2.176164e-49 | -8.615850e-47 |
| Msa0279690 | Msa0978950 | 0.803487 | 3.406016e-49 | -8.615850e-47 |
| Msa0279690 | Msa1031010 | 0.801067 | 1.072482e-48 | -8.615850e-47 |
| Msa0279690 | Msa1044680 | 0.803864 | 2.844509e-49 | -8.615850e-47 |
| Msa0279690 | Msa1051900 | 0.812595 | 3.917365e-51 | -8.615850e-47 |
| Msa0279690 | Msa1066670 | 0.840782 | 7.067460e-58 | -8.615850e-47 |
| Msa0279690 | Msa1070150 | 0.805483 | 1.306481e-49 | -8.615850e-47 |
| Msa0279690 | Msa1072940 | 0.813517 | 2.459203e-51 | -8.615850e-47 |
| Msa0279690 | Msa1085330 | 0.823329 | 1.468780e-53 | -8.615850e-47 |
| Msa0279690 | Msa1103990 | 0.810547 | 1.091798e-50 | -8.615850e-47 |
| Msa0279690 | Msa1132840 | 0.853448 | 2.374375e-61 | -8.615850e-47 |
| Msa0279690 | Msa1157980 | 0.813650 | 2.298988e-51 | -8.615850e-47 |
| Msa0279690 | Msa1160920 | 0.819615 | 1.058199e-52 | -8.615850e-47 |
| Msa0279690 | Msa1175180 | 0.813935 | 1.989852e-51 | -8.615850e-47 |
| Msa0279690 | Msa1175990 | 0.805391 | 1.365798e-49 | -8.615850e-47 |
| Msa0279690 | Msa1186020 | 0.812619 | 3.869484e-51 | -8.615850e-47 |
| Msa0279690 | Msa1190180 | 0.805366 | 1.382158e-49 | -8.615850e-47 |
| Msa0279690 | Msa1192570 | 0.804127 | 2.507916e-49 | -8.615850e-47 |
| Msa0279690 | Msa1193170 | 0.810128 | 1.344552e-50 | -8.615850e-47 |
| Msa0279690 | Msa1208950 | 0.848256 | 6.880373e-60 | -8.615850e-47 |
| Msa0279690 | Msa1226520 | 0.815750 | 7.879622e-52 | -8.615850e-47 |
| Msa0279690 | Msa1228200 | 0.805420 | 1.346394e-49 | -8.615850e-47 |
| Msa0279690 | Msa1238820 | 0.801047 | 1.082389e-48 | -8.615850e-47 |
| Msa0279690 | Msa1265650 | 0.820676 | 6.047298e-53 | -8.615850e-47 |
| Msa0279690 | Msa1277150 | 0.803189 | 3.924831e-49 | -8.615850e-47 |
| Msa0279690 | Msa1278970 | -0.814498 | 1.494246e-51 | -8.615850e-47 |
| Msa0279690 | Msa1292590 | 0.809750 | 1.621531e-50 | -8.615850e-47 |
| Msa0279690 | Msa1303560 | 0.814771 | 1.300063e-51 | -8.615850e-47 |
| Msa0279690 | Msa1303650 | 0.817845 | 2.669115e-52 | -8.615850e-47 |
| Msa0279690 | Msa1320670 | 0.812557 | 3.994056e-51 | -8.615850e-47 |
| Msa0279690 | Msa1325410 | -0.804703 | 1.901604e-49 | -8.615850e-47 |
| Msa0279690 | Msa1341840 | 0.832980 | 6.934177e-56 | -8.615850e-47 |
| Msa0279690 | Msa1343170 | 0.814435 | 1.542792e-51 | -8.615850e-47 |
| Msa0279690 | Msa1343180 | 0.812529 | 4.049842e-51 | -8.615850e-47 |
| Msa0279690 | Msa1348090 | 0.843162 | 1.660475e-58 | -8.615850e-47 |
| Msa0279690 | Msa1359690 | 0.828520 | 8.587582e-55 | -8.615850e-47 |
| Msa0279690 | Msa1372040 | 0.839700 | 1.354223e-57 | -8.615850e-47 |
| Msa0279690 | Msa1382300 | 0.801009 | 1.102281e-48 | -8.615850e-47 |
| Msa0279690 | Msa1392580 | 0.811143 | 8.112036e-51 | -8.615850e-47 |
| Msa0279690 | Msa1397400 | 0.818151 | 2.276012e-52 | -8.615850e-47 |
| Msa0279690 | Msa1405460 | 0.842291 | 2.828571e-58 | -8.615850e-47 |
| Msa0279690 | Msa1414640 | 0.800559 | 1.361399e-48 | -8.615850e-47 |
| Msa0279690 | Msa1415540 | 0.823132 | 1.632864e-53 | -8.615850e-47 |
| Msa0279690 | Msa1420950 | 0.801890 | 7.271853e-49 | -8.615850e-47 |
| Msa0279690 | Msa1427100 | 0.805207 | 1.492026e-49 | -8.615850e-47 |
| Msa0279690 | Msa1437930 | 0.815310 | 9.871912e-52 | -8.615850e-47 |
| Msa0279690 | Msa1440960 | 0.801200 | 1.007520e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279690 | MtrunA17_Chr2g0293201 | 96.368 | 468 | 17 | 0 | 1 | 468 | 1 | 468 | 0.0 | 801 |
| Msa0279690 | MtrunA17_Chr8g0385291 | 50.254 | 394 | 181 | 6 | 81 | 467 | 116 | 501 | 1.64e-132 | 392 |
| Msa0279690 | MtrunA17_Chr3g0131071 | 50.674 | 371 | 170 | 7 | 88 | 452 | 193 | 556 | 2.69e-127 | 381 |
| Msa0279690 | MtrunA17_Chr1g0183881 | 44.444 | 405 | 198 | 5 | 64 | 468 | 91 | 468 | 3.14e-124 | 370 |
| Msa0279690 | MtrunA17_Chr4g0014901 | 49.347 | 383 | 182 | 7 | 88 | 463 | 213 | 590 | 4.80e-124 | 374 |
| Msa0279690 | MtrunA17_Chr4g0014911 | 43.617 | 470 | 207 | 8 | 6 | 462 | 35 | 459 | 7.33e-121 | 361 |
| Msa0279690 | MtrunA17_Chr4g0004981 | 50.000 | 342 | 161 | 5 | 124 | 461 | 107 | 442 | 3.83e-119 | 356 |
| Msa0279690 | MtrunA17_Chr7g0243541 | 36.916 | 428 | 174 | 9 | 47 | 468 | 62 | 399 | 3.44e-86 | 270 |
| Msa0279690 | MtrunA17_Chr3g0131581 | 29.048 | 210 | 133 | 6 | 142 | 349 | 67 | 262 | 1.59e-19 | 88.2 |
| Msa0279690 | MtrunA17_Chr8g0385681 | 29.524 | 210 | 132 | 8 | 142 | 349 | 50 | 245 | 4.49e-17 | 80.9 |
| Msa0279690 | MtrunA17_Chr8g0385691 | 29.524 | 210 | 132 | 8 | 142 | 349 | 47 | 242 | 4.66e-16 | 77.8 |
| Msa0279690 | MtrunA17_Chr4g0035381 | 27.434 | 226 | 151 | 6 | 132 | 349 | 74 | 294 | 6.17e-13 | 70.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0279690 | AT1G30690.1 | 68.421 | 342 | 101 | 3 | 122 | 463 | 200 | 534 | 8.75e-177 | 506 |
| Msa0279690 | AT1G30690.1 | 45.283 | 106 | 51 | 2 | 1 | 100 | 1 | 105 | 3.07e-12 | 68.9 |
| Msa0279690 | AT1G30690.2 | 68.421 | 342 | 101 | 3 | 122 | 463 | 200 | 534 | 8.75e-177 | 506 |
| Msa0279690 | AT1G30690.2 | 45.283 | 106 | 51 | 2 | 1 | 100 | 1 | 105 | 3.07e-12 | 68.9 |
| Msa0279690 | AT1G72160.1 | 44.924 | 463 | 212 | 7 | 2 | 461 | 63 | 485 | 1.29e-127 | 379 |
| Msa0279690 | AT4G09160.1 | 43.187 | 433 | 195 | 7 | 34 | 462 | 276 | 661 | 7.37e-120 | 365 |
| Msa0279690 | AT4G09160.3 | 43.187 | 433 | 195 | 7 | 34 | 462 | 251 | 636 | 7.87e-120 | 364 |
| Msa0279690 | AT4G09160.2 | 43.187 | 433 | 195 | 7 | 34 | 462 | 251 | 636 | 9.75e-120 | 364 |
| Msa0279690 | AT3G51670.1 | 48.098 | 368 | 175 | 7 | 109 | 466 | 44 | 405 | 9.70e-117 | 348 |
| Msa0279690 | AT1G22530.2 | 43.832 | 381 | 193 | 9 | 87 | 464 | 286 | 648 | 7.56e-97 | 305 |
| Msa0279690 | AT1G22530.1 | 43.832 | 381 | 193 | 9 | 87 | 464 | 320 | 682 | 1.12e-96 | 306 |
| Msa0279690 | AT1G72150.1 | 42.857 | 343 | 180 | 8 | 126 | 464 | 243 | 573 | 2.34e-86 | 276 |
| Msa0279690 | AT1G01630.1 | 27.619 | 210 | 136 | 6 | 142 | 349 | 50 | 245 | 1.50e-15 | 77.0 |
| Msa0279690 | AT4G08690.2 | 27.444 | 266 | 159 | 10 | 108 | 362 | 14 | 256 | 2.90e-13 | 70.9 |
| Msa0279690 | AT4G08690.1 | 27.444 | 266 | 159 | 10 | 108 | 362 | 14 | 256 | 2.90e-13 | 70.9 |
| Msa0279690 | AT4G08690.3 | 27.444 | 266 | 159 | 10 | 108 | 362 | 14 | 256 | 2.90e-13 | 70.9 |
| Msa0279690 | AT2G21540.3 | 26.724 | 232 | 145 | 8 | 132 | 349 | 85 | 305 | 6.19e-11 | 65.1 |
| Msa0279690 | AT2G21540.5 | 26.724 | 232 | 145 | 8 | 132 | 349 | 85 | 305 | 6.19e-11 | 65.1 |
| Msa0279690 | AT2G21540.6 | 26.724 | 232 | 145 | 8 | 132 | 349 | 85 | 305 | 6.47e-11 | 65.1 |
| Msa0279690 | AT2G21540.2 | 26.724 | 232 | 145 | 8 | 132 | 349 | 85 | 305 | 6.47e-11 | 65.1 |
| Msa0279690 | AT2G21540.1 | 26.724 | 232 | 145 | 8 | 132 | 349 | 85 | 305 | 6.47e-11 | 65.1 |
| Msa0279690 | AT2G21540.4 | 26.724 | 232 | 145 | 8 | 132 | 349 | 85 | 305 | 6.47e-11 | 65.1 |
| Msa0279690 | AT3G24840.1 | 26.523 | 279 | 171 | 11 | 92 | 349 | 48 | 313 | 8.85e-11 | 64.7 |
| Msa0279690 | AT3G24840.6 | 26.523 | 279 | 171 | 11 | 92 | 349 | 48 | 313 | 8.85e-11 | 64.7 |
| Msa0279690 | AT3G24840.4 | 26.523 | 279 | 171 | 11 | 92 | 349 | 48 | 313 | 8.85e-11 | 64.7 |
| Msa0279690 | AT3G24840.2 | 26.523 | 279 | 171 | 11 | 92 | 349 | 48 | 313 | 8.85e-11 | 64.7 |
| Msa0279690 | AT3G24840.7 | 26.523 | 279 | 171 | 11 | 92 | 349 | 48 | 313 | 9.76e-11 | 64.3 |
| Msa0279690 | AT3G24840.3 | 26.523 | 279 | 171 | 11 | 92 | 349 | 48 | 313 | 9.76e-11 | 64.3 |
| Msa0279690 | AT3G24840.5 | 26.523 | 279 | 171 | 11 | 92 | 349 | 48 | 313 | 9.76e-11 | 64.3 |
Find 104 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCATAATTCAATTCTTTA+AGG | 0.059255 | 2_3:+13754548 | None:intergenic |
| TTTGAGGGCTAGAGAGTTTA+AGG | 0.103122 | 2_3:-13756530 | Msa0279690:CDS |
| GTGCTGGGACTTGGCTGTTT+TGG | 0.168500 | 2_3:-13754783 | Msa0279690:CDS |
| TCTCAAAGAGTTTGAGAAAA+AGG | 0.202003 | 2_3:-13756800 | Msa0279690:CDS |
| TACACAATCATTGTTCAAAA+AGG | 0.217177 | 2_3:-13754710 | Msa0279690:CDS |
| AGGAAAAGGATTTGTCTTTA+TGG | 0.230619 | 2_3:-13756612 | Msa0279690:CDS |
| TTTGTTCCATTGTGTGTATT+TGG | 0.253649 | 2_3:-13754517 | Msa0279690:three_prime_UTR |
| TGAGAAATGTTCTTCTTATA+AGG | 0.258619 | 2_3:-13756845 | Msa0279690:CDS |
| CAACAACAACCTCAACCTTC+TGG | 0.270747 | 2_3:+13756941 | None:intergenic |
| AATGAAGATTGATTCTGTTT+TGG | 0.287002 | 2_3:-13756458 | Msa0279690:CDS |
| GAAAATGATTCTGAGTTCTT+TGG | 0.307280 | 2_3:-13755530 | Msa0279690:CDS |
| GTTTAAATGAAGCTTGAAAA+AGG | 0.308863 | 2_3:+13757208 | None:intergenic |
| GGAAAAGGATTTGTCTTTAT+GGG | 0.314477 | 2_3:-13756611 | Msa0279690:CDS |
| TGTTGAAGAAGACACTTAAA+TGG | 0.342376 | 2_3:-13756489 | Msa0279690:CDS |
| ATTCTAAGCTCTTTCTTTGA+AGG | 0.365061 | 2_3:+13756175 | None:intergenic |
| TTGAGAGCATAGTACCAAAA+AGG | 0.375844 | 2_3:+13755778 | None:intergenic |
| GTTCACAAGAAGGACCTATT+AGG | 0.377937 | 2_3:-13754676 | Msa0279690:CDS |
| AAGGACCAGGGGAATTCTTA+AGG | 0.379415 | 2_3:+13756194 | None:intergenic |
| GGTTGAAGAGGTTGAGGAAA+AGG | 0.389487 | 2_3:-13756626 | Msa0279690:CDS |
| AACAACAACCTCAACCTTCT+GGG | 0.397542 | 2_3:+13756942 | None:intergenic |
| GAGATGGAGGTGTTCTGTTA+TGG | 0.398108 | 2_3:-13756281 | Msa0279690:CDS |
| TTCTTGAAAGTGTTCCTAAT+AGG | 0.405231 | 2_3:+13754662 | None:intergenic |
| AAACACTTTGTGCTGGGACT+TGG | 0.406964 | 2_3:-13754792 | Msa0279690:CDS |
| TGAAGGAAGAAGAAGAGAAA+AGG | 0.407319 | 2_3:-13756648 | Msa0279690:CDS |
| AACATCTATAATGTGTTTGA+CGG | 0.412191 | 2_3:-13756358 | Msa0279690:CDS |
| GAAGGAAGAAGAAGAGAAAA+GGG | 0.413453 | 2_3:-13756647 | Msa0279690:CDS |
| TTTGTTCTTTGAGTTAAGAA+TGG | 0.417407 | 2_3:+13755742 | None:intergenic |
| ACTCCTTCATTTCCTTTGCT+TGG | 0.417448 | 2_3:+13756574 | None:intergenic |
| TTGAAACCACCATAGTTAAC+GGG | 0.423701 | 2_3:+13755557 | None:intergenic |
| GTTGAAGCTTTGAAAGAAGA+AGG | 0.427026 | 2_3:-13756694 | Msa0279690:CDS |
| GTTGAGGTTGTTGTTGAAGA+AGG | 0.435417 | 2_3:-13756934 | Msa0279690:CDS |
| GCAAACTGTTACAATGTTGC+AGG | 0.436211 | 2_3:-13756143 | Msa0279690:CDS |
| AAGAACAAAGAGCAAATTTG+TGG | 0.438490 | 2_3:-13755728 | Msa0279690:CDS |
| AGCTCTTTCTTTGAAGGACC+AGG | 0.438792 | 2_3:+13756181 | None:intergenic |
| AAAGGAAGAAGAGACCAAAA+AGG | 0.439180 | 2_3:-13756716 | Msa0279690:CDS |
| GAAAAGGGTTGAAGAGGTTG+AGG | 0.440546 | 2_3:-13756632 | Msa0279690:CDS |
| TTAACGGGGATCTCCTCAAT+TGG | 0.444973 | 2_3:+13755572 | None:intergenic |
| TCAGAACTCATTCTCAAGGC+TGG | 0.446261 | 2_3:-13755491 | Msa0279690:CDS |
| CTTGAAACCACCATAGTTAA+CGG | 0.446694 | 2_3:+13755556 | None:intergenic |
| CGTTGAAGCTAAGGAATCAA+TGG | 0.450052 | 2_3:-13756893 | Msa0279690:CDS |
| GAGGAGATCCCCGTTAACTA+TGG | 0.451921 | 2_3:-13755566 | Msa0279690:CDS |
| AGTGTTTCAGTGACCTTAGC+AGG | 0.454038 | 2_3:+13755697 | None:intergenic |
| GGTGTTCTGTTATGGAGAAA+TGG | 0.464992 | 2_3:-13756273 | Msa0279690:CDS |
| ACTTTCAAGAACAATGAACT+TGG | 0.467179 | 2_3:-13754650 | Msa0279690:CDS |
| AAAGAAGAAGGTGGTGAAGA+GGG | 0.471661 | 2_3:-13756682 | Msa0279690:CDS |
| TATTGAGATTCCTGCATTGG+AGG | 0.473291 | 2_3:-13755456 | Msa0279690:intron |
| GTGTATGAGCCCTCATCATT+GGG | 0.473892 | 2_3:+13754728 | None:intergenic |
| TGTGTATGAGCCCTCATCAT+TGG | 0.484245 | 2_3:+13754727 | None:intergenic |
| TTCTCTCACACTTTCCTCAA+AGG | 0.486409 | 2_3:-13757116 | Msa0279690:intron |
| TGAAGAAAACGTTGAAGCTA+AGG | 0.490839 | 2_3:-13756902 | Msa0279690:CDS |
| AGGTTGGAAACACTTTGTGC+TGG | 0.495437 | 2_3:-13754799 | Msa0279690:CDS |
| TTGCCAAGCAAAGGAAATGA+AGG | 0.497177 | 2_3:-13756577 | Msa0279690:CDS |
| AGAAGAGAAAAGGGTTGAAG+AGG | 0.500355 | 2_3:-13756638 | Msa0279690:CDS |
| AACTATTGAGATTCCTGCAT+TGG | 0.500373 | 2_3:-13755459 | Msa0279690:CDS |
| TGTGGTTGCTCGTCCTGCTA+AGG | 0.506843 | 2_3:-13755710 | Msa0279690:CDS |
| AGACATAGTTTCAGCAGTCA+TGG | 0.508382 | 2_3:+13756975 | None:intergenic |
| AGCTCTTGTTGTTCTTGTAA+CGG | 0.509938 | 2_3:+13754573 | None:intergenic |
| TTTGATTGAATTTAGATCAA+AGG | 0.509973 | 2_3:-13756776 | Msa0279690:CDS |
| TGTTTCAGAACTCATTCTCA+AGG | 0.510830 | 2_3:-13755495 | Msa0279690:CDS |
| AGAAGAAGCCCAGAAGGTTG+AGG | 0.511990 | 2_3:-13756950 | Msa0279690:CDS |
| CAAGAACAATGAACTTGGGA+AGG | 0.514037 | 2_3:-13754645 | Msa0279690:CDS |
| TGAATTTAGATCAAAGGTTG+AGG | 0.516018 | 2_3:-13756770 | Msa0279690:CDS |
| GCAGGACAATTACCCTGAAA+TGG | 0.521138 | 2_3:-13756125 | Msa0279690:CDS |
| GCTTCTGCTGCTTATATGAA+CGG | 0.524197 | 2_3:-13756412 | Msa0279690:CDS |
| GAGAACAAGACATACCTTTG+AGG | 0.524295 | 2_3:+13757102 | None:intergenic |
| GTTCTGAAACAGAAGCATCT+TGG | 0.530758 | 2_3:+13755507 | None:intergenic |
| GGGTTGGGAGGTAAGTTACA+AGG | 0.531439 | 2_3:-13754762 | Msa0279690:CDS |
| AAATAGGTACATTCCAATTG+AGG | 0.536084 | 2_3:-13755585 | Msa0279690:intron |
| CTCTTTCTTTGAAGGACCAG+GGG | 0.541201 | 2_3:+13756183 | None:intergenic |
| GAAAAGGATTTGTCTTTATG+GGG | 0.548785 | 2_3:-13756610 | Msa0279690:CDS |
| GGTTGGAAACACTTTGTGCT+GGG | 0.556295 | 2_3:-13754798 | Msa0279690:CDS |
| AAAGGTAGTGTGAGTTGTGA+GGG | 0.560258 | 2_3:+13757186 | None:intergenic |
| GAAAGTGTGAGAGAAAATTG+AGG | 0.560804 | 2_3:+13757124 | None:intergenic |
| GAAAGAAGAAGGTGGTGAAG+AGG | 0.561752 | 2_3:-13756683 | Msa0279690:CDS |
| AAGAAGATAGGTTCACAAGA+AGG | 0.566410 | 2_3:-13754686 | Msa0279690:CDS |
| AAAAGGAAGAAAGGAAAAGG+TGG | 0.567338 | 2_3:+13757225 | None:intergenic |
| AGAGGGTGATAAAGTTGTGA+AGG | 0.574412 | 2_3:-13756665 | Msa0279690:CDS |
| CAGAAGCTGAATTTGAAACC+AGG | 0.580201 | 2_3:-13756247 | Msa0279690:CDS |
| ATGAAACCAAATACACACAA+TGG | 0.580373 | 2_3:+13754511 | None:intergenic |
| CTTTCAAGAACAATGAACTT+GGG | 0.580721 | 2_3:-13754649 | Msa0279690:CDS |
| GTCTCAAGAAGAAGCCCAGA+AGG | 0.581073 | 2_3:-13756956 | Msa0279690:CDS |
| GGAATTTGTTCCCAATGATG+AGG | 0.582127 | 2_3:-13754738 | Msa0279690:CDS |
| GTAGTTGTTGTGTTTGTGAA+AGG | 0.582225 | 2_3:+13757168 | None:intergenic |
| AATGACCTTAAGAATTCCCC+TGG | 0.584257 | 2_3:-13756199 | Msa0279690:CDS |
| GCTCTTTCTTTGAAGGACCA+GGG | 0.584342 | 2_3:+13756182 | None:intergenic |
| GAATTTGTTCCCAATGATGA+GGG | 0.593569 | 2_3:-13754737 | Msa0279690:CDS |
| TTAACTATGGTGGTTTCAAG+AGG | 0.595085 | 2_3:-13755553 | Msa0279690:CDS |
| AGATGAGATAGATACATCAC+TGG | 0.598675 | 2_3:+13754383 | None:intergenic |
| GAAGACACTTAAATGGAGGA+AGG | 0.599488 | 2_3:-13756482 | Msa0279690:CDS |
| AGGAAATGAAGGAGTTGATG+TGG | 0.611522 | 2_3:-13756566 | Msa0279690:CDS |
| GAGATCCCCGTTAACTATGG+TGG | 0.623907 | 2_3:-13755563 | Msa0279690:CDS |
| TAACTATGGTGGTTTCAAGA+GGG | 0.625180 | 2_3:-13755552 | Msa0279690:CDS |
| GGACAATTACCCTGAAATGG+TGG | 0.627558 | 2_3:-13756122 | Msa0279690:CDS |
| GAAAGGTAGTGTGAGTTGTG+AGG | 0.639650 | 2_3:+13757185 | None:intergenic |
| TTATAGATGTTGTAACACAC+AGG | 0.643226 | 2_3:+13756370 | None:intergenic |
| AAAGGAAGAAAGGAAAAGGT+GGG | 0.658363 | 2_3:+13757226 | None:intergenic |
| AGCAAAGAAGAAACACCACC+TGG | 0.660485 | 2_3:+13756229 | None:intergenic |
| GAAGCTTTGAAAGAAGAAGG+TGG | 0.663635 | 2_3:-13756691 | Msa0279690:CDS |
| TGAAGAAGACACTTAAATGG+AGG | 0.668116 | 2_3:-13756486 | Msa0279690:CDS |
| ATGAACGGTGTTGATCGCGA+AGG | 0.683407 | 2_3:-13756397 | Msa0279690:CDS |
| TTGGGAGGTAAGTTACAAGG+AGG | 0.694505 | 2_3:-13754759 | Msa0279690:CDS |
| TATAGATGTTGTAACACACA+GGG | 0.704028 | 2_3:+13756371 | None:intergenic |
| AAGCTGAATTTGAAACCAGG+TGG | 0.704521 | 2_3:-13756244 | Msa0279690:CDS |
| TGAAACCACCATAGTTAACG+GGG | 0.731833 | 2_3:+13755558 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTTATCAAAAAACTTTT+GGG | - | chr2_3:13755204-13755223 | Msa0279690:intron | 15.0% |
| !! | ATAGCAATTAAATAAACTAA+AGG | + | chr2_3:13755474-13755493 | None:intergenic | 15.0% |
| !! | TTTGATTGAATTTAGATCAA+AGG | - | chr2_3:13754758-13754777 | Msa0279690:CDS | 20.0% |
| !!! | GAGATTTATCAAAAAACTTT+TGG | - | chr2_3:13755203-13755222 | Msa0279690:intron | 20.0% |
| !!! | GAAAAAGAAACTTACATTTT+TGG | + | chr2_3:13755438-13755457 | None:intergenic | 20.0% |
| !! | AAAGTAAATAAGGTCAATTA+TGG | + | chr2_3:13755922-13755941 | None:intergenic | 20.0% |
| !!! | TTTTAGATGCAAAGTAAATA+AGG | + | chr2_3:13755932-13755951 | None:intergenic | 20.0% |
| !!! | ATTTACTTTGCATCTAAAAT+AGG | - | chr2_3:13755933-13755952 | Msa0279690:intron | 20.0% |
| !! | TTAAATCGTTTAATCAAACA+TGG | - | chr2_3:13756556-13756575 | Msa0279690:CDS | 20.0% |
| !! | TGTAAAATCAAATGCAAAAT+TGG | - | chr2_3:13756680-13756699 | Msa0279690:CDS | 20.0% |
| !!! | AGGTTTTTTTGTCTTTTAAT+AGG | - | chr2_3:13756715-13756734 | Msa0279690:CDS | 20.0% |
| !!! | TTTTTTGTCTTTTAATAGGT+TGG | - | chr2_3:13756719-13756738 | Msa0279690:CDS | 20.0% |
| !! | CTTCATAATTCAATTCTTTA+AGG | + | chr2_3:13756989-13757008 | None:intergenic | 20.0% |
| !!! | TTCATTTAGATTTTGAAAGT+AGG | - | chr2_3:13757041-13757060 | Msa0279690:intron | 20.0% |
| !!! | TTTTTTAGTTTAAGTCTTCA+AGG | + | chr2_3:13757209-13757228 | None:intergenic | 20.0% |
| !! | GAAGACTTAAACTAAAAAAT+TGG | - | chr2_3:13757210-13757229 | Msa0279690:five_prime_UTR | 20.0% |
| ! | GTTTAAATGAAGCTTGAAAA+AGG | + | chr2_3:13754329-13754348 | None:intergenic | 25.0% |
| !! | TTCTCATTGCTTTAAATTTC+TGG | - | chr2_3:13754457-13754476 | Msa0279690:three_prime_UTR | 25.0% |
| !! | TCTCATTGCTTTAAATTTCT+GGG | - | chr2_3:13754458-13754477 | Msa0279690:three_prime_UTR | 25.0% |
| ! | TGAGAAATGTTCTTCTTATA+AGG | - | chr2_3:13754689-13754708 | Msa0279690:CDS | 25.0% |
| !! | TTCTTCCTTTTTCTCAAAAA+GGG | + | chr2_3:13754808-13754827 | None:intergenic | 25.0% |
| !!! | AATGAAGATTGATTCTGTTT+TGG | - | chr2_3:13755076-13755095 | Msa0279690:intron | 25.0% |
| ! | AACATCTATAATGTGTTTGA+CGG | - | chr2_3:13755176-13755195 | Msa0279690:intron | 25.0% |
| ! | CTGATACTATTACAAGAAAA+TGG | - | chr2_3:13755563-13755582 | Msa0279690:CDS | 25.0% |
| !! | TTTTCATCAATGTTCCTTTT+TGG | - | chr2_3:13755742-13755761 | Msa0279690:CDS | 25.0% |
| !! | TTTGTTCTTTGAGTTAAGAA+TGG | + | chr2_3:13755795-13755814 | None:intergenic | 25.0% |
| !!! | GAGATGATTAATTGATTTTG+AGG | + | chr2_3:13755875-13755894 | None:intergenic | 25.0% |
| ! | TTGACCTTATAAACTTGTAT+AGG | - | chr2_3:13756379-13756398 | Msa0279690:CDS | 25.0% |
| ! | CTTATACATAAGAACTGATA+TGG | - | chr2_3:13756510-13756529 | Msa0279690:CDS | 25.0% |
| ! | AAAATTGGACACATTCTAAA+AGG | - | chr2_3:13756695-13756714 | Msa0279690:CDS | 25.0% |
| ! | TACACAATCATTGTTCAAAA+AGG | - | chr2_3:13756824-13756843 | Msa0279690:CDS | 25.0% |
| ! | ACACAATCATTGTTCAAAAA+GGG | - | chr2_3:13756825-13756844 | Msa0279690:CDS | 25.0% |
| !!! | ATTTAGATTTTGAAAGTAGG+TGG | - | chr2_3:13757044-13757063 | Msa0279690:intron | 25.0% |
| !! | AAATGAAAGAATGCCTTTTT+CGG | + | chr2_3:13757099-13757118 | None:intergenic | 25.0% |
| TGAAAAAGGAAGAAAGGAAA+AGG | + | chr2_3:13754315-13754334 | None:intergenic | 30.0% | |
| !!! | CATTTCTCAACTGTTTTTGT+GGG | + | chr2_3:13754678-13754697 | None:intergenic | 30.0% |
| !!! | ACATTTCTCAACTGTTTTTG+TGG | + | chr2_3:13754679-13754698 | None:intergenic | 30.0% |
| TCTCAAAGAGTTTGAGAAAA+AGG | - | chr2_3:13754734-13754753 | Msa0279690:CDS | 30.0% | |
| TGAATTTAGATCAAAGGTTG+AGG | - | chr2_3:13754764-13754783 | Msa0279690:CDS | 30.0% | |
| ! | CTTCTTCCTTTTTCTCAAAA+AGG | + | chr2_3:13754809-13754828 | None:intergenic | 30.0% |
| ! | TTTCAAAGCTTCAACCTTTT+TGG | + | chr2_3:13754835-13754854 | None:intergenic | 30.0% |
| AGGAAAAGGATTTGTCTTTA+TGG | - | chr2_3:13754922-13754941 | Msa0279690:intron | 30.0% | |
| GGAAAAGGATTTGTCTTTAT+GGG | - | chr2_3:13754923-13754942 | Msa0279690:intron | 30.0% | |
| GAAAAGGATTTGTCTTTATG+GGG | - | chr2_3:13754924-13754943 | Msa0279690:intron | 30.0% | |
| !!! | TGGTTTTGTTGAAGTTTTTG+AGG | - | chr2_3:13754988-13755007 | Msa0279690:intron | 30.0% |
| !!! | GGTTTTGTTGAAGTTTTTGA+GGG | - | chr2_3:13754989-13755008 | Msa0279690:intron | 30.0% |
| TGTTGAAGAAGACACTTAAA+TGG | - | chr2_3:13755045-13755064 | Msa0279690:intron | 30.0% | |
| TATAGATGTTGTAACACACA+GGG | + | chr2_3:13755166-13755185 | None:intergenic | 30.0% | |
| TTATAGATGTTGTAACACAC+AGG | + | chr2_3:13755167-13755186 | None:intergenic | 30.0% | |
| !! | AGAGAAAAGAGTTTTTGAGA+TGG | - | chr2_3:13755237-13755256 | Msa0279690:intron | 30.0% |
| ATTCTAAGCTCTTTCTTTGA+AGG | + | chr2_3:13755362-13755381 | None:intergenic | 30.0% | |
| AAGAACAAAGAGCAAATTTG+TGG | - | chr2_3:13755806-13755825 | Msa0279690:intron | 30.0% | |
| AAATAGGTACATTCCAATTG+AGG | - | chr2_3:13755949-13755968 | Msa0279690:intron | 30.0% | |
| GAAAATGATTCTGAGTTCTT+TGG | - | chr2_3:13756004-13756023 | Msa0279690:intron | 30.0% | |
| AGCTCCTATACAAGTTTATA+AGG | + | chr2_3:13756386-13756405 | None:intergenic | 30.0% | |
| TATGGTGTGAATTCTTAACA+TGG | - | chr2_3:13756528-13756547 | Msa0279690:CDS | 30.0% | |
| !! | GCATTTGATTTTACAAGAAC+TGG | + | chr2_3:13756675-13756694 | None:intergenic | 30.0% |
| !! | TTCTTGAAAGTGTTCCTAAT+AGG | + | chr2_3:13756875-13756894 | None:intergenic | 30.0% |
| ACTTTCAAGAACAATGAACT+TGG | - | chr2_3:13756884-13756903 | Msa0279690:CDS | 30.0% | |
| CTTTCAAGAACAATGAACTT+GGG | - | chr2_3:13756885-13756904 | Msa0279690:CDS | 30.0% | |
| ACACATCAAACAAAAAGAAG+AGG | - | chr2_3:13756930-13756949 | Msa0279690:CDS | 30.0% | |
| CACATCAAACAAAAAGAAGA+GGG | - | chr2_3:13756931-13756950 | Msa0279690:CDS | 30.0% | |
| TTTGTTCCATTGTGTGTATT+TGG | - | chr2_3:13757017-13757036 | Msa0279690:intron | 30.0% | |
| ATGAAACCAAATACACACAA+TGG | + | chr2_3:13757026-13757045 | None:intergenic | 30.0% | |
| GAAGCTTGAAAAAGGAAGAA+AGG | + | chr2_3:13754321-13754340 | None:intergenic | 35.0% | |
| GTAGTTGTTGTGTTTGTGAA+AGG | + | chr2_3:13754369-13754388 | None:intergenic | 35.0% | |
| ! | GAAAGTGTGAGAGAAAATTG+AGG | + | chr2_3:13754413-13754432 | None:intergenic | 35.0% |
| TGAAGAAAACGTTGAAGCTA+AGG | - | chr2_3:13754632-13754651 | Msa0279690:CDS | 35.0% | |
| !! | GAACACCCTTTTTGAGAAAA+AGG | - | chr2_3:13754800-13754819 | Msa0279690:CDS | 35.0% |
| AAAGGAAGAAGAGACCAAAA+AGG | - | chr2_3:13754818-13754837 | Msa0279690:intron | 35.0% | |
| !! | GTTGAAGCTTTGAAAGAAGA+AGG | - | chr2_3:13754840-13754859 | Msa0279690:intron | 35.0% |
| TGAAGGAAGAAGAAGAGAAA+AGG | - | chr2_3:13754886-13754905 | Msa0279690:intron | 35.0% | |
| GAAGGAAGAAGAAGAGAAAA+GGG | - | chr2_3:13754887-13754906 | Msa0279690:intron | 35.0% | |
| TGAAGAAGACACTTAAATGG+AGG | - | chr2_3:13755048-13755067 | Msa0279690:intron | 35.0% | |
| !! | GAAGATTGATTCTGTTTTGG+AGG | - | chr2_3:13755079-13755098 | Msa0279690:intron | 35.0% |
| !!! | TCTGTTTTGGAGGAAGATTT+TGG | - | chr2_3:13755089-13755108 | Msa0279690:intron | 35.0% |
| !!! | GGAAGATTTTGGTTCTGATT+TGG | - | chr2_3:13755100-13755119 | Msa0279690:intron | 35.0% |
| !! | TCAAAAAACTTTTGGGAGTG+AGG | - | chr2_3:13755211-13755230 | Msa0279690:intron | 35.0% |
| !!! | GAAAAGAGTTTTTGAGATGG+AGG | - | chr2_3:13755240-13755259 | Msa0279690:intron | 35.0% |
| ! | AACACGACATTACGGATTAA+AGG | + | chr2_3:13755657-13755676 | None:intergenic | 35.0% |
| TTTAATCCGTAATGTCGTGT+TGG | - | chr2_3:13755656-13755675 | Msa0279690:intron | 35.0% | |
| TATCTACCAACACGACATTA+CGG | + | chr2_3:13755665-13755684 | None:intergenic | 35.0% | |
| ! | TTGAGAGCATAGTACCAAAA+AGG | + | chr2_3:13755759-13755778 | None:intergenic | 35.0% |
| TTGAAACCACCATAGTTAAC+GGG | + | chr2_3:13755980-13755999 | None:intergenic | 35.0% | |
| CTTGAAACCACCATAGTTAA+CGG | + | chr2_3:13755981-13756000 | None:intergenic | 35.0% | |
| TTAACTATGGTGGTTTCAAG+AGG | - | chr2_3:13755981-13756000 | Msa0279690:intron | 35.0% | |
| TAACTATGGTGGTTTCAAGA+GGG | - | chr2_3:13755982-13756001 | Msa0279690:intron | 35.0% | |
| TGTTTCAGAACTCATTCTCA+AGG | - | chr2_3:13756039-13756058 | Msa0279690:intron | 35.0% | |
| AACTATTGAGATTCCTGCAT+TGG | - | chr2_3:13756075-13756094 | Msa0279690:intron | 35.0% | |
| ATAGGAGCTGTGAGATTATT+TGG | - | chr2_3:13756397-13756416 | Msa0279690:CDS | 35.0% | |
| TAGGAGCTGTGAGATTATTT+GGG | - | chr2_3:13756398-13756417 | Msa0279690:CDS | 35.0% | |
| CATGGTGTGAATTCTTAACT+TGG | - | chr2_3:13756574-13756593 | Msa0279690:CDS | 35.0% | |
| ! | GAATTTGTTCCCAATGATGA+GGG | - | chr2_3:13756797-13756816 | Msa0279690:CDS | 35.0% |
| GTTCAAAAAGGGAAGAAGAT+AGG | - | chr2_3:13756836-13756855 | Msa0279690:CDS | 35.0% | |
| AAGAAGATAGGTTCACAAGA+AGG | - | chr2_3:13756848-13756867 | Msa0279690:CDS | 35.0% | |
| !! | AGCTCTTGTTGTTCTTGTAA+CGG | + | chr2_3:13756964-13756983 | None:intergenic | 35.0% |
| !!! | AGAGTTTTGAAGACCGAAAA+AGG | - | chr2_3:13757083-13757102 | Msa0279690:intron | 35.0% |
| AGATGAGATAGATACATCAC+TGG | + | chr2_3:13757154-13757173 | None:intergenic | 35.0% | |
| AAAGGTAGTGTGAGTTGTGA+GGG | + | chr2_3:13754351-13754370 | None:intergenic | 40.0% | |
| TTCTCTCACACTTTCCTCAA+AGG | - | chr2_3:13754418-13754437 | Msa0279690:three_prime_UTR | 40.0% | |
| GAGAACAAGACATACCTTTG+AGG | + | chr2_3:13754435-13754454 | None:intergenic | 40.0% | |
| AGACATAGTTTCAGCAGTCA+TGG | + | chr2_3:13754562-13754581 | None:intergenic | 40.0% | |
| AACAACAACCTCAACCTTCT+GGG | + | chr2_3:13754595-13754614 | None:intergenic | 40.0% | |
| ! | GTTGAGGTTGTTGTTGAAGA+AGG | - | chr2_3:13754600-13754619 | Msa0279690:CDS | 40.0% |
| CGTTGAAGCTAAGGAATCAA+TGG | - | chr2_3:13754641-13754660 | Msa0279690:CDS | 40.0% | |
| !! | AAGGTTGAGGAAGCTGTTTT+AGG | - | chr2_3:13754777-13754796 | Msa0279690:CDS | 40.0% |
| !! | AGGTTGAGGAAGCTGTTTTA+GGG | - | chr2_3:13754778-13754797 | Msa0279690:CDS | 40.0% |
| !! | GAAGCTTTGAAAGAAGAAGG+TGG | - | chr2_3:13754843-13754862 | Msa0279690:intron | 40.0% |
| AAAGAAGAAGGTGGTGAAGA+GGG | - | chr2_3:13754852-13754871 | Msa0279690:intron | 40.0% | |
| AGAGGGTGATAAAGTTGTGA+AGG | - | chr2_3:13754869-13754888 | Msa0279690:intron | 40.0% | |
| AGAAGAGAAAAGGGTTGAAG+AGG | - | chr2_3:13754896-13754915 | Msa0279690:intron | 40.0% | |
| TTGCCAAGCAAAGGAAATGA+AGG | - | chr2_3:13754957-13754976 | Msa0279690:intron | 40.0% | |
| ACTCCTTCATTTCCTTTGCT+TGG | + | chr2_3:13754963-13754982 | None:intergenic | 40.0% | |
| !! | AGGAAATGAAGGAGTTGATG+TGG | - | chr2_3:13754968-13754987 | Msa0279690:intron | 40.0% |
| TTTGAGGGCTAGAGAGTTTA+AGG | - | chr2_3:13755004-13755023 | Msa0279690:intron | 40.0% | |
| GAAGACACTTAAATGGAGGA+AGG | - | chr2_3:13755052-13755071 | Msa0279690:intron | 40.0% | |
| ! | GCTTCTGCTGCTTATATGAA+CGG | - | chr2_3:13755122-13755141 | Msa0279690:intron | 40.0% |
| GGTGTTCTGTTATGGAGAAA+TGG | - | chr2_3:13755261-13755280 | Msa0279690:intron | 40.0% | |
| ! | CAGAAGCTGAATTTGAAACC+AGG | - | chr2_3:13755287-13755306 | Msa0279690:intron | 40.0% |
| ! | AAGCTGAATTTGAAACCAGG+TGG | - | chr2_3:13755290-13755309 | Msa0279690:intron | 40.0% |
| AATGACCTTAAGAATTCCCC+TGG | - | chr2_3:13755335-13755354 | Msa0279690:intron | 40.0% | |
| GCAAACTGTTACAATGTTGC+AGG | - | chr2_3:13755391-13755410 | Msa0279690:intron | 40.0% | |
| !!! | CATTTTTGGCCACCATTTCA+GGG | + | chr2_3:13755424-13755443 | None:intergenic | 40.0% |
| !!! | ACATTTTTGGCCACCATTTC+AGG | + | chr2_3:13755425-13755444 | None:intergenic | 40.0% |
| AACGCGAGATTCAGTAACAA+TGG | + | chr2_3:13755595-13755614 | None:intergenic | 40.0% | |
| ATTGTTACTGAATCTCGCGT+TGG | - | chr2_3:13755594-13755613 | Msa0279690:intron | 40.0% | |
| ! | TTAAAGGCATGTCTGGTGTT+CGG | + | chr2_3:13755641-13755660 | None:intergenic | 40.0% |
| ! | TTACGGATTAAAGGCATGTC+TGG | + | chr2_3:13755648-13755667 | None:intergenic | 40.0% |
| ! | GTAATGTCGTGTTGGTAGAT+AGG | - | chr2_3:13755664-13755683 | Msa0279690:intron | 40.0% |
| ! | TCGTGTTGGTAGATAGGTAT+AGG | - | chr2_3:13755670-13755689 | Msa0279690:intron | 40.0% |
| TGAAACCACCATAGTTAACG+GGG | + | chr2_3:13755979-13755998 | None:intergenic | 40.0% | |
| !! | GTTCTGAAACAGAAGCATCT+TGG | + | chr2_3:13756030-13756049 | None:intergenic | 40.0% |
| TATTGAGATTCCTGCATTGG+AGG | - | chr2_3:13756078-13756097 | Msa0279690:intron | 40.0% | |
| ! | GTAGTTTTTACCTCCAATGC+AGG | + | chr2_3:13756091-13756110 | None:intergenic | 40.0% |
| TCTGCTCTTTAGTGTGCTTT+AGG | - | chr2_3:13756131-13756150 | Msa0279690:CDS | 40.0% | |
| AGGAATATGCAGTGCATGTT+AGG | - | chr2_3:13756151-13756170 | Msa0279690:CDS | 40.0% | |
| !! | TTTTTGAGAGACTCTGAGCT+AGG | - | chr2_3:13756306-13756325 | Msa0279690:CDS | 40.0% |
| CTTGTAGAGCTCATGCATAA+AGG | + | chr2_3:13756441-13756460 | None:intergenic | 40.0% | |
| ! | GGAATTTGTTCCCAATGATG+AGG | - | chr2_3:13756796-13756815 | Msa0279690:CDS | 40.0% |
| GTTCACAAGAAGGACCTATT+AGG | - | chr2_3:13756858-13756877 | Msa0279690:CDS | 40.0% | |
| CAAGAACAATGAACTTGGGA+AGG | - | chr2_3:13756889-13756908 | Msa0279690:CDS | 40.0% | |
| GAAAGGTAGTGTGAGTTGTG+AGG | + | chr2_3:13754352-13754371 | None:intergenic | 45.0% | |
| CAACAACAACCTCAACCTTC+TGG | + | chr2_3:13754596-13754615 | None:intergenic | 45.0% | |
| GAAAGAAGAAGGTGGTGAAG+AGG | - | chr2_3:13754851-13754870 | Msa0279690:intron | 45.0% | |
| GAAAAGGGTTGAAGAGGTTG+AGG | - | chr2_3:13754902-13754921 | Msa0279690:intron | 45.0% | |
| GGTTGAAGAGGTTGAGGAAA+AGG | - | chr2_3:13754908-13754927 | Msa0279690:intron | 45.0% | |
| !!! | GTGTCACTTTTGCCAAGCAA+AGG | - | chr2_3:13754948-13754967 | Msa0279690:intron | 45.0% |
| !! | GAGATGGAGGTGTTCTGTTA+TGG | - | chr2_3:13755253-13755272 | Msa0279690:intron | 45.0% |
| AGCAAAGAAGAAACACCACC+TGG | + | chr2_3:13755308-13755327 | None:intergenic | 45.0% | |
| AAGGACCAGGGGAATTCTTA+AGG | + | chr2_3:13755343-13755362 | None:intergenic | 45.0% | |
| ! | CTCTTTCTTTGAAGGACCAG+GGG | + | chr2_3:13755354-13755373 | None:intergenic | 45.0% |
| ! | GCTCTTTCTTTGAAGGACCA+GGG | + | chr2_3:13755355-13755374 | None:intergenic | 45.0% |
| ! | AGCTCTTTCTTTGAAGGACC+AGG | + | chr2_3:13755356-13755375 | None:intergenic | 45.0% |
| GCAGGACAATTACCCTGAAA+TGG | - | chr2_3:13755409-13755428 | Msa0279690:intron | 45.0% | |
| GGACAATTACCCTGAAATGG+TGG | - | chr2_3:13755412-13755431 | Msa0279690:intron | 45.0% | |
| AGTGTTTCAGTGACCTTAGC+AGG | + | chr2_3:13755840-13755859 | None:intergenic | 45.0% | |
| TTAACGGGGATCTCCTCAAT+TGG | + | chr2_3:13755965-13755984 | None:intergenic | 45.0% | |
| TCAGAACTCATTCTCAAGGC+TGG | - | chr2_3:13756043-13756062 | Msa0279690:intron | 45.0% | |
| !!! | TGAGCTAGGCTGGTTTGTTT+TGG | - | chr2_3:13756320-13756339 | Msa0279690:CDS | 45.0% |
| ! | TTTTGGACAAGTGCATGCGA+GGG | - | chr2_3:13756337-13756356 | Msa0279690:CDS | 45.0% |
| AGGTTGGAAACACTTTGTGC+TGG | - | chr2_3:13756735-13756754 | Msa0279690:CDS | 45.0% | |
| GGTTGGAAACACTTTGTGCT+GGG | - | chr2_3:13756736-13756755 | Msa0279690:CDS | 45.0% | |
| AAACACTTTGTGCTGGGACT+TGG | - | chr2_3:13756742-13756761 | Msa0279690:CDS | 45.0% | |
| TTGGGAGGTAAGTTACAAGG+AGG | - | chr2_3:13756775-13756794 | Msa0279690:CDS | 45.0% | |
| GTGTATGAGCCCTCATCATT+GGG | + | chr2_3:13756809-13756828 | None:intergenic | 45.0% | |
| TGTGTATGAGCCCTCATCAT+TGG | + | chr2_3:13756810-13756829 | None:intergenic | 45.0% | |
| GTCTCAAGAAGAAGCCCAGA+AGG | - | chr2_3:13754578-13754597 | Msa0279690:CDS | 50.0% | |
| AGAAGAAGCCCAGAAGGTTG+AGG | - | chr2_3:13754584-13754603 | Msa0279690:CDS | 50.0% | |
| !! | ATGAACGGTGTTGATCGCGA+AGG | - | chr2_3:13755137-13755156 | Msa0279690:intron | 50.0% |
| CTGGTGTTCGGTACACATGT+TGG | + | chr2_3:13755629-13755648 | None:intergenic | 50.0% | |
| GAGGAGATCCCCGTTAACTA+TGG | - | chr2_3:13755968-13755987 | Msa0279690:intron | 50.0% | |
| GAGATCCCCGTTAACTATGG+TGG | - | chr2_3:13755971-13755990 | Msa0279690:intron | 50.0% | |
| !! | GTTTTGGACAAGTGCATGCG+AGG | - | chr2_3:13756336-13756355 | Msa0279690:CDS | 50.0% |
| !! | TGCTGGGACTTGGCTGTTTT+GGG | - | chr2_3:13756752-13756771 | Msa0279690:CDS | 50.0% |
| !!! | GGACTTGGCTGTTTTGGGTT+GGG | - | chr2_3:13756757-13756776 | Msa0279690:CDS | 50.0% |
| GGGTTGGGAGGTAAGTTACA+AGG | - | chr2_3:13756772-13756791 | Msa0279690:CDS | 50.0% | |
| ! | CTGAATCTCGCGTTGGTGTC+AGG | - | chr2_3:13755601-13755620 | Msa0279690:intron | 55.0% |
| TGTGGTTGCTCGTCCTGCTA+AGG | - | chr2_3:13755824-13755843 | Msa0279690:intron | 55.0% | |
| TGAGAGACTCTGAGCTAGGC+TGG | - | chr2_3:13756310-13756329 | Msa0279690:CDS | 55.0% | |
| ! | GTGCTGGGACTTGGCTGTTT+TGG | - | chr2_3:13756751-13756770 | Msa0279690:CDS | 55.0% |
| !! | GGGACTTGGCTGTTTTGGGT+TGG | - | chr2_3:13756756-13756775 | Msa0279690:CDS | 55.0% |
| !!! | CTTGGCTGTTTTGGGTTGGG+AGG | - | chr2_3:13756760-13756779 | Msa0279690:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 13754310 | 13757246 | 13754310 | ID=Msa0279690;Name=Msa0279690 |
| chr2_3 | mRNA | 13754310 | 13757246 | 13754310 | ID=Msa0279690-mRNA-1;Parent=Msa0279690;Name=Msa0279690-mRNA-1;_AED=0.13;_eAED=0.13;_QI=143|1|1|1|0.75|0.6|5|255|468 |
| chr2_3 | exon | 13754310 | 13754819 | 13754310 | ID=Msa0279690-mRNA-1:exon:5855;Parent=Msa0279690-mRNA-1 |
| chr2_3 | exon | 13755457 | 13755601 | 13755457 | ID=Msa0279690-mRNA-1:exon:5854;Parent=Msa0279690-mRNA-1 |
| chr2_3 | exon | 13755691 | 13755815 | 13755691 | ID=Msa0279690-mRNA-1:exon:5853;Parent=Msa0279690-mRNA-1 |
| chr2_3 | exon | 13756114 | 13757008 | 13756114 | ID=Msa0279690-mRNA-1:exon:5852;Parent=Msa0279690-mRNA-1 |
| chr2_3 | exon | 13757117 | 13757246 | 13757117 | ID=Msa0279690-mRNA-1:exon:5851;Parent=Msa0279690-mRNA-1 |
| chr2_3 | five_prime_UTR | 13757117 | 13757246 | 13757117 | ID=Msa0279690-mRNA-1:five_prime_utr;Parent=Msa0279690-mRNA-1 |
| chr2_3 | five_prime_UTR | 13756996 | 13757008 | 13756996 | ID=Msa0279690-mRNA-1:five_prime_utr;Parent=Msa0279690-mRNA-1 |
| chr2_3 | CDS | 13756114 | 13756995 | 13756114 | ID=Msa0279690-mRNA-1:cds;Parent=Msa0279690-mRNA-1 |
| chr2_3 | CDS | 13755691 | 13755815 | 13755691 | ID=Msa0279690-mRNA-1:cds;Parent=Msa0279690-mRNA-1 |
| chr2_3 | CDS | 13755457 | 13755601 | 13755457 | ID=Msa0279690-mRNA-1:cds;Parent=Msa0279690-mRNA-1 |
| chr2_3 | CDS | 13754565 | 13754819 | 13754565 | ID=Msa0279690-mRNA-1:cds;Parent=Msa0279690-mRNA-1 |
| chr2_3 | three_prime_UTR | 13754310 | 13754564 | 13754310 | ID=Msa0279690-mRNA-1:three_prime_utr;Parent=Msa0279690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
