Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401670 | XP_003608787.1 | 98.866 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 0.0 | 909 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401670 | sp|Q9LNA5|ACR8_ARATH | 68.578 | 436 | 133 | 2 | 8 | 441 | 8 | 441 | 0.0 | 604 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401670 | G7JK72 | 98.866 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 0.0 | 909 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017930 | Msa1401670 | 0.801338 | 9.437640e-49 | -8.615850e-47 |
| Msa0048510 | Msa1401670 | 0.805158 | 1.527630e-49 | -8.615850e-47 |
| Msa0077340 | Msa1401670 | 0.844120 | 9.202440e-59 | -8.615850e-47 |
| Msa0077560 | Msa1401670 | 0.848943 | 4.441583e-60 | -8.615850e-47 |
| Msa0094780 | Msa1401670 | 0.815055 | 1.124818e-51 | -8.615850e-47 |
| Msa0102240 | Msa1401670 | 0.804671 | 1.931817e-49 | -8.615850e-47 |
| Msa1365820 | Msa1401670 | 0.835220 | 1.905000e-56 | -8.615850e-47 |
| Msa1368390 | Msa1401670 | 0.820324 | 7.283717e-53 | -8.615850e-47 |
| Msa1389900 | Msa1401670 | 0.811621 | 6.389152e-51 | -8.615850e-47 |
| Msa1391500 | Msa1401670 | 0.805139 | 1.541773e-49 | -8.615850e-47 |
| Msa1398810 | Msa1401670 | 0.822354 | 2.477140e-53 | -8.615850e-47 |
| Msa1401670 | Msa1405460 | 0.828958 | 6.728911e-55 | -8.615850e-47 |
| Msa1401670 | Msa1412000 | 0.808440 | 3.094027e-50 | -8.615850e-47 |
| Msa1401670 | Msa1427110 | 0.816096 | 6.593928e-52 | -8.615850e-47 |
| Msa1401670 | Msa1464090 | 0.828502 | 8.675072e-55 | -8.615850e-47 |
| Msa0609490 | Msa1401670 | -0.805932 | 1.051082e-49 | -8.615850e-47 |
| Msa0611210 | Msa1401670 | 0.804428 | 2.170540e-49 | -8.615850e-47 |
| Msa0624900 | Msa1401670 | 0.800917 | 1.150793e-48 | -8.615850e-47 |
| Msa0652770 | Msa1401670 | 0.812512 | 4.084903e-51 | -8.615850e-47 |
| Msa0662820 | Msa1401670 | 0.835365 | 1.750472e-56 | -8.615850e-47 |
| Msa0674480 | Msa1401670 | 0.821302 | 4.341086e-53 | -8.615850e-47 |
| Msa0693340 | Msa1401670 | -0.848170 | 7.268161e-60 | -8.615850e-47 |
| Msa0709440 | Msa1401670 | 0.805873 | 1.081519e-49 | -8.615850e-47 |
| Msa0734250 | Msa1401670 | 0.817419 | 3.329889e-52 | -8.615850e-47 |
| Msa0815970 | Msa1401670 | 0.813093 | 3.046700e-51 | -8.615850e-47 |
| Msa0125360 | Msa1401670 | 0.832007 | 1.208223e-55 | -8.615850e-47 |
| Msa0142430 | Msa1401670 | 0.803032 | 4.229405e-49 | -8.615850e-47 |
| Msa0198820 | Msa1401670 | 0.809684 | 1.675731e-50 | -8.615850e-47 |
| Msa0204950 | Msa1401670 | 0.832588 | 8.676196e-56 | -8.615850e-47 |
| Msa1258000 | Msa1401670 | 0.982915 | 2.448173e-156 | -8.615850e-47 |
| Msa1299740 | Msa1401670 | -0.817046 | 4.040204e-52 | -8.615850e-47 |
| Msa1340200 | Msa1401670 | 0.807513 | 4.872058e-50 | -8.615850e-47 |
| Msa0408380 | Msa1401670 | 0.810709 | 1.007424e-50 | -8.615850e-47 |
| Msa0409830 | Msa1401670 | 0.821260 | 4.437191e-53 | -8.615850e-47 |
| Msa0412790 | Msa1401670 | 0.805433 | 1.338336e-49 | -8.615850e-47 |
| Msa0427700 | Msa1401670 | 0.800219 | 1.597102e-48 | -8.615850e-47 |
| Msa0481890 | Msa1401670 | 0.801229 | 9.936941e-49 | -8.615850e-47 |
| Msa1072940 | Msa1401670 | 0.814277 | 1.672172e-51 | -8.615850e-47 |
| Msa1074890 | Msa1401670 | 0.817191 | 3.748412e-52 | -8.615850e-47 |
| Msa1074900 | Msa1401670 | 0.810704 | 1.009639e-50 | -8.615850e-47 |
| Msa1085330 | Msa1401670 | 0.803074 | 4.146821e-49 | -8.615850e-47 |
| Msa0241610 | Msa1401670 | 0.860698 | 1.723013e-63 | -8.615850e-47 |
| Msa0249850 | Msa1401670 | 0.837768 | 4.278101e-57 | -8.615850e-47 |
| Msa0263230 | Msa1401670 | 0.808727 | 2.686265e-50 | -8.615850e-47 |
| Msa0269210 | Msa1401670 | 0.818038 | 2.414042e-52 | -8.615850e-47 |
| Msa0281470 | Msa1401670 | 0.832104 | 1.143519e-55 | -8.615850e-47 |
| Msa0288620 | Msa1401670 | 0.816573 | 5.159468e-52 | -8.615850e-47 |
| Msa0300840 | Msa1401670 | 0.807247 | 5.549433e-50 | -8.615850e-47 |
| Msa0307270 | Msa1401670 | 0.821172 | 4.650440e-53 | -8.615850e-47 |
| Msa0320600 | Msa1401670 | 0.832456 | 9.356508e-56 | -8.615850e-47 |
| Msa0338340 | Msa1401670 | 0.816853 | 4.463465e-52 | -8.615850e-47 |
| Msa0361910 | Msa1401670 | 0.841468 | 4.666052e-58 | -8.615850e-47 |
| Msa1115740 | Msa1401670 | 0.821463 | 3.983348e-53 | -8.615850e-47 |
| Msa1150960 | Msa1401670 | 0.810569 | 1.080166e-50 | -8.615850e-47 |
| Msa1158200 | Msa1401670 | 0.853878 | 1.785700e-61 | -8.615850e-47 |
| Msa1160920 | Msa1401670 | 0.807756 | 4.326708e-50 | -8.615850e-47 |
| Msa1162230 | Msa1401670 | 0.802590 | 5.220063e-49 | -8.615850e-47 |
| Msa1165090 | Msa1401670 | 0.812776 | 3.576516e-51 | -8.615850e-47 |
| Msa1171290 | Msa1401670 | 0.805667 | 1.195197e-49 | -8.615850e-47 |
| Msa1184890 | Msa1401670 | 0.840786 | 7.049482e-58 | -8.615850e-47 |
| Msa1190160 | Msa1401670 | 0.960026 | 4.289406e-118 | -8.615850e-47 |
| Msa1190180 | Msa1401670 | 0.981417 | 1.544323e-152 | -8.615850e-47 |
| Msa1192560 | Msa1401670 | 0.802122 | 6.517154e-49 | -8.615850e-47 |
| Msa1192570 | Msa1401670 | 0.801933 | 7.124909e-49 | -8.615850e-47 |
| Msa1207330 | Msa1401670 | 0.801805 | 7.570553e-49 | -8.615850e-47 |
| Msa0502510 | Msa1401670 | 0.804003 | 2.661461e-49 | -8.615850e-47 |
| Msa0519760 | Msa1401670 | 0.838885 | 2.203598e-57 | -8.615850e-47 |
| Msa0519810 | Msa1401670 | 0.820019 | 8.556751e-53 | -8.615850e-47 |
| Msa0519840 | Msa1401670 | 0.838270 | 3.176808e-57 | -8.615850e-47 |
| Msa0529030 | Msa1401670 | 0.825055 | 5.774784e-54 | -8.615850e-47 |
| Msa0534720 | Msa1401670 | 0.820965 | 5.190746e-53 | -8.615850e-47 |
| Msa0543560 | Msa1401670 | 0.805916 | 1.059346e-49 | -8.615850e-47 |
| Msa0555860 | Msa1401670 | -0.824500 | 7.805011e-54 | -8.615850e-47 |
| Msa0579070 | Msa1401670 | -0.816315 | 5.890601e-52 | -8.615850e-47 |
| Msa0597700 | Msa1401670 | 0.837157 | 6.134488e-57 | -8.615850e-47 |
| Msa0599420 | Msa1401670 | 0.806550 | 7.788532e-50 | -8.615850e-47 |
| Msa0865420 | Msa1401670 | 0.803853 | 2.858567e-49 | -8.615850e-47 |
| Msa0878280 | Msa1401670 | 0.810582 | 1.072778e-50 | -8.615850e-47 |
| Msa0945190 | Msa1401670 | 0.806507 | 7.953341e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401670 | MtrunA17_Chr4g0056741 | 98.866 | 441 | 5 | 0 | 1 | 441 | 1 | 441 | 0.0 | 909 |
| Msa1401670 | MtrunA17_Chr5g0398581 | 76.644 | 441 | 103 | 0 | 1 | 441 | 1 | 441 | 0.0 | 717 |
| Msa1401670 | MtrunA17_Chr5g0420221 | 52.036 | 442 | 195 | 5 | 8 | 441 | 19 | 451 | 3.43e-151 | 437 |
| Msa1401670 | MtrunA17_Chr7g0222461 | 50.109 | 459 | 198 | 6 | 3 | 441 | 4 | 451 | 1.11e-150 | 435 |
| Msa1401670 | MtrunA17_Chr7g0224571 | 49.330 | 448 | 205 | 5 | 8 | 441 | 3 | 442 | 2.48e-146 | 424 |
| Msa1401670 | MtrunA17_Chr3g0125661 | 47.439 | 449 | 209 | 9 | 3 | 431 | 6 | 447 | 1.97e-132 | 389 |
| Msa1401670 | MtrunA17_Chr1g0159541 | 46.698 | 424 | 196 | 6 | 3 | 399 | 6 | 426 | 3.32e-130 | 383 |
| Msa1401670 | MtrunA17_Chr5g0400941 | 41.627 | 418 | 207 | 6 | 9 | 391 | 12 | 427 | 6.28e-105 | 320 |
| Msa1401670 | MtrunA17_Chr4g0054261 | 38.551 | 428 | 227 | 7 | 9 | 400 | 31 | 458 | 8.26e-93 | 289 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401670 | AT1G12420.1 | 68.578 | 436 | 133 | 2 | 8 | 441 | 8 | 441 | 0.0 | 604 |
| Msa1401670 | AT4G22780.1 | 62.306 | 451 | 154 | 7 | 1 | 439 | 1 | 447 | 0.0 | 554 |
| Msa1401670 | AT4G22780.2 | 62.306 | 451 | 154 | 7 | 1 | 439 | 1 | 447 | 0.0 | 554 |
| Msa1401670 | AT1G12420.2 | 66.846 | 371 | 119 | 2 | 73 | 441 | 1 | 369 | 7.53e-177 | 499 |
| Msa1401670 | AT1G69040.2 | 50.559 | 447 | 204 | 5 | 8 | 441 | 13 | 455 | 7.44e-154 | 444 |
| Msa1401670 | AT1G69040.1 | 50.559 | 447 | 204 | 5 | 8 | 441 | 9 | 451 | 9.72e-154 | 444 |
| Msa1401670 | AT2G03730.2 | 49.558 | 452 | 200 | 7 | 8 | 439 | 13 | 456 | 8.93e-143 | 416 |
| Msa1401670 | AT2G03730.1 | 49.558 | 452 | 200 | 7 | 8 | 439 | 13 | 456 | 8.93e-143 | 416 |
| Msa1401670 | AT3G01990.7 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.65e-137 | 402 |
| Msa1401670 | AT3G01990.5 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.65e-137 | 402 |
| Msa1401670 | AT3G01990.11 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 1.79e-137 | 401 |
| Msa1401670 | AT3G01990.6 | 51.263 | 396 | 177 | 3 | 8 | 391 | 18 | 409 | 1.94e-137 | 402 |
| Msa1401670 | AT3G01990.10 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 2.32e-137 | 401 |
| Msa1401670 | AT3G01990.1 | 51.263 | 396 | 177 | 3 | 8 | 391 | 4 | 395 | 2.32e-137 | 401 |
| Msa1401670 | AT1G76990.4 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.23e-133 | 392 |
| Msa1401670 | AT1G76990.5 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.23e-133 | 392 |
| Msa1401670 | AT1G76990.2 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.23e-133 | 392 |
| Msa1401670 | AT1G76990.3 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.23e-133 | 392 |
| Msa1401670 | AT1G76990.1 | 47.586 | 435 | 205 | 6 | 3 | 418 | 6 | 436 | 2.23e-133 | 392 |
| Msa1401670 | AT5G25320.1 | 40.632 | 443 | 214 | 6 | 3 | 396 | 6 | 448 | 3.33e-113 | 342 |
| Msa1401670 | AT3G01990.9 | 50.453 | 331 | 148 | 3 | 8 | 326 | 4 | 330 | 2.06e-108 | 324 |
| Msa1401670 | AT3G01990.4 | 50.453 | 331 | 148 | 3 | 8 | 326 | 18 | 344 | 2.12e-108 | 324 |
| Msa1401670 | AT5G25320.3 | 41.320 | 409 | 193 | 5 | 35 | 396 | 1 | 409 | 3.01e-108 | 328 |
| Msa1401670 | AT3G01990.2 | 50.920 | 326 | 144 | 3 | 8 | 321 | 18 | 339 | 3.55e-108 | 323 |
| Msa1401670 | AT5G65890.1 | 40.385 | 416 | 211 | 6 | 9 | 389 | 13 | 426 | 9.58e-101 | 309 |
| Msa1401670 | AT5G65890.3 | 40.385 | 416 | 211 | 6 | 9 | 389 | 13 | 426 | 9.58e-101 | 309 |
| Msa1401670 | AT3G01990.3 | 48.621 | 290 | 133 | 3 | 8 | 285 | 18 | 303 | 3.10e-87 | 269 |
| Msa1401670 | AT5G65890.4 | 39.467 | 375 | 190 | 6 | 50 | 389 | 2 | 374 | 3.25e-87 | 273 |
| Msa1401670 | AT5G65890.2 | 39.467 | 375 | 190 | 6 | 50 | 389 | 2 | 374 | 3.25e-87 | 273 |
| Msa1401670 | AT3G01990.8 | 48.621 | 290 | 133 | 3 | 8 | 285 | 4 | 289 | 4.09e-87 | 268 |
| Msa1401670 | AT5G25320.2 | 39.402 | 368 | 174 | 6 | 3 | 321 | 6 | 373 | 4.97e-87 | 270 |
| Msa1401670 | AT5G65890.5 | 37.500 | 296 | 163 | 4 | 114 | 389 | 19 | 312 | 1.05e-62 | 207 |
| Msa1401670 | AT2G39570.1 | 24.126 | 286 | 197 | 10 | 28 | 298 | 16 | 296 | 2.59e-11 | 65.5 |
Find 151 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAAGAATTCCATGCTTTC+TGG | 0.070129 | tig0022713:+76362 | None:intergenic |
| CATATGCTTTCTTAATAAAA+AGG | 0.188552 | tig0022713:+76310 | None:intergenic |
| TCAGAACTAAACTTGAAAAT+TGG | 0.205980 | tig0022713:+75646 | None:intergenic |
| GAGAAGGAATCTGTACAATT+TGG | 0.211853 | tig0022713:-74831 | Msa1401670:CDS |
| ATTATTCCTTGCTTCAAGTT+TGG | 0.225846 | tig0022713:-74719 | Msa1401670:three_prime_UTR |
| CAAGCAAAGCACATTTAAAA+TGG | 0.244916 | tig0022713:+74575 | None:intergenic |
| TTATTCCTTGCTTCAAGTTT+GGG | 0.252486 | tig0022713:-74718 | Msa1401670:three_prime_UTR |
| ATTTGGTGGAGCCTTCTTTC+AGG | 0.258400 | tig0022713:+75700 | None:intergenic |
| TTCTGAGGTGTTTGCTGTAT+TGG | 0.260105 | tig0022713:-75932 | Msa1401670:CDS |
| TGAGAAGGAATAGGAGAGTT+TGG | 0.278470 | tig0022713:-77278 | Msa1401670:five_prime_UTR |
| CAGAAAGCATGGAATTCTTT+TGG | 0.281447 | tig0022713:-76361 | Msa1401670:CDS |
| TACCTTGACTATAGTTGAAT+TGG | 0.284936 | tig0022713:+76487 | None:intergenic |
| TTTCATGTTACCGATCAAAA+TGG | 0.291087 | tig0022713:-76174 | Msa1401670:CDS |
| CGCTCCGGTTCTGAACTAAT+TGG | 0.301964 | tig0022713:+75327 | None:intergenic |
| TGTCTCATAACCGTCGTTTC+AGG | 0.310934 | tig0022713:-77128 | Msa1401670:five_prime_UTR |
| GCTCCGGTTCTGAACTAATT+GGG | 0.318294 | tig0022713:+75328 | None:intergenic |
| TGAATCTTTCTATGTATAGA+AGG | 0.325840 | tig0022713:+77177 | None:intergenic |
| TTGGTTGGATTGGATTCATT+TGG | 0.330750 | tig0022713:-74642 | Msa1401670:three_prime_UTR |
| AGGTAGAGGGAGGAACAATT+TGG | 0.330947 | tig0022713:-74451 | Msa1401670:three_prime_UTR |
| GAATGTAGAATATGATTCTT+TGG | 0.337577 | tig0022713:-74493 | Msa1401670:three_prime_UTR |
| TTTCTTGAATGCAGGGTGTT+AGG | 0.338412 | tig0022713:-75162 | Msa1401670:intron |
| TATTTGCGTGGACATCCTAT+TGG | 0.346323 | tig0022713:+74255 | None:intergenic |
| AGAAGGAATCTGTACAATTT+GGG | 0.351653 | tig0022713:-74830 | Msa1401670:CDS |
| CGGTAGTGACTGTACAGAAT+TGG | 0.353447 | tig0022713:-75618 | Msa1401670:CDS |
| TACAAGGAGATAGTGATATT+AGG | 0.356042 | tig0022713:-75759 | Msa1401670:CDS |
| TATGTTAAAGACAGCATCTC+TGG | 0.364796 | tig0022713:-75841 | Msa1401670:CDS |
| CCATCCCTCCAGCTGGATAA+AGG | 0.365406 | tig0022713:+74605 | None:intergenic |
| GCTGTCTTTAACATAAATTA+AGG | 0.381361 | tig0022713:+75849 | None:intergenic |
| AGGATTCTCAGAAAATTAAT+CGG | 0.384316 | tig0022713:-75807 | Msa1401670:CDS |
| CACGGTCTGCAAACATCATT+TGG | 0.388010 | tig0022713:+75683 | None:intergenic |
| CAGAGAGAGTGAGAAGGAAT+AGG | 0.402611 | tig0022713:-77287 | Msa1401670:five_prime_UTR |
| ATCTGATGGAAGATGGTTCA+TGG | 0.410749 | tig0022713:-76283 | Msa1401670:CDS |
| GGGGCAGTGTTATTGTCTCT+TGG | 0.420031 | tig0022713:-74863 | Msa1401670:CDS |
| TAGGAGAGTTTGGTAAGAGT+GGG | 0.425429 | tig0022713:-77268 | Msa1401670:five_prime_UTR |
| ATCTTTCATGAGCGTGCATA+AGG | 0.426731 | tig0022713:+74319 | None:intergenic |
| TTCTTAAAGCAGAAAGATAA+GGG | 0.434943 | tig0022713:-74792 | Msa1401670:exon |
| TGCTTTGCTTGAAGAAAAGA+AGG | 0.436855 | tig0022713:-74563 | Msa1401670:three_prime_UTR |
| ATCCATAGTAGGTTGTGAAA+AGG | 0.442398 | tig0022713:-74516 | Msa1401670:three_prime_UTR |
| GTTAAGCAATTTAAAAGTAA+AGG | 0.442529 | tig0022713:-74945 | Msa1401670:CDS |
| AGGGAGGAACAATTTGGATT+GGG | 0.445622 | tig0022713:-74445 | Msa1401670:three_prime_UTR |
| TGTACAGAATTGGGCAGAAA+GGG | 0.454717 | tig0022713:-75608 | Msa1401670:CDS |
| AATAGGTTGTTATCCATAGT+AGG | 0.455518 | tig0022713:-74527 | Msa1401670:three_prime_UTR |
| GTTCTTAAAGCAGAAAGATA+AGG | 0.456386 | tig0022713:-74793 | Msa1401670:exon |
| ATCAAGGCGAGGATTGCGTT+TGG | 0.457398 | tig0022713:-77336 | Msa1401670:five_prime_UTR |
| TCTCACTGCCTTGGAATTGA+AGG | 0.460594 | tig0022713:-75977 | Msa1401670:CDS |
| AAAGCATATGTTTCATCTGA+TGG | 0.461288 | tig0022713:-76297 | Msa1401670:CDS |
| GATTGGATTCATTTGGTATG+TGG | 0.463686 | tig0022713:-74635 | Msa1401670:three_prime_UTR |
| GGTAGTGACTGTACAGAATT+GGG | 0.466583 | tig0022713:-75617 | Msa1401670:CDS |
| GAGGGAGGAACAATTTGGAT+TGG | 0.467021 | tig0022713:-74446 | Msa1401670:three_prime_UTR |
| CATAACTACCACCGGAGACT+TGG | 0.467944 | tig0022713:-75050 | Msa1401670:CDS |
| GTGGCACAGAAAGGAAGATT+AGG | 0.467978 | tig0022713:-74471 | Msa1401670:three_prime_UTR |
| CATAAATTAAGGAGGCTGTT+CGG | 0.469802 | tig0022713:+75860 | None:intergenic |
| ATAGGAGAGTTTGGTAAGAG+TGG | 0.469805 | tig0022713:-77269 | Msa1401670:five_prime_UTR |
| GAGAGTGGAAAGATAGAGAA+AGG | 0.476421 | tig0022713:-77311 | Msa1401670:five_prime_UTR |
| TTACATTCAACCCGTTCTCT+CGG | 0.476911 | tig0022713:+75083 | None:intergenic |
| CAGAAAGGAAGATTAGGTAG+AGG | 0.477546 | tig0022713:-74465 | Msa1401670:three_prime_UTR |
| TATAGTTGAATTGGAACAAA+CGG | 0.479069 | tig0022713:+76496 | None:intergenic |
| TAGAAATGGTCTCACTGCCT+TGG | 0.483190 | tig0022713:-75986 | Msa1401670:CDS |
| TCCATAGTAGGTTGTGAAAA+GGG | 0.484251 | tig0022713:-74515 | Msa1401670:three_prime_UTR |
| AACCCCAATTAGTTCAGAAC+CGG | 0.487755 | tig0022713:-75331 | Msa1401670:CDS |
| GATCAATCAGTTGGAGTTGG+AGG | 0.489723 | tig0022713:-74884 | Msa1401670:CDS |
| TTCTATGCAACAGATGCCAT+TGG | 0.489734 | tig0022713:-75016 | Msa1401670:CDS |
| ACTAACTCTTACGTAAATTG+TGG | 0.491534 | tig0022713:-74233 | Msa1401670:three_prime_UTR |
| ATGTGGTGGAGGCTAAAGTA+TGG | 0.495423 | tig0022713:-75894 | Msa1401670:CDS |
| AACATTTGCAGCCAAGTCTC+CGG | 0.500842 | tig0022713:+75039 | None:intergenic |
| CTGTACAGAATTGGGCAGAA+AGG | 0.501383 | tig0022713:-75609 | Msa1401670:CDS |
| TTGGTCAGCTGGGTATCCAA+TGG | 0.501529 | tig0022713:+75000 | None:intergenic |
| ATCAAGCTACTAAGATAAGA+TGG | 0.502245 | tig0022713:-77048 | Msa1401670:exon |
| ATGTTTCATCTGATGGAAGA+TGG | 0.504319 | tig0022713:-76290 | Msa1401670:CDS |
| CTAACTCTTACGTAAATTGT+GGG | 0.509075 | tig0022713:-74232 | Msa1401670:three_prime_UTR |
| TGAGAACATTCCGAGAGAAC+GGG | 0.510017 | tig0022713:-75093 | Msa1401670:CDS |
| GTACCGCATCGAGATCCAAT+AGG | 0.510161 | tig0022713:-74270 | Msa1401670:three_prime_UTR |
| AAGAGGGAGAGTTAAGATCA+AGG | 0.511157 | tig0022713:-77352 | None:intergenic |
| ATGCATTAAAAGCCACCGCT+TGG | 0.514841 | tig0022713:-77216 | Msa1401670:five_prime_UTR |
| TTCCAATTCAACTATAGTCA+AGG | 0.517688 | tig0022713:-76489 | Msa1401670:intron |
| TGAATCACACGATGGCGCTC+CGG | 0.519655 | tig0022713:+75312 | None:intergenic |
| ATGAGAACATTCCGAGAGAA+CGG | 0.522763 | tig0022713:-75094 | Msa1401670:CDS |
| GAAGATCAATCAGTTGGAGT+TGG | 0.523868 | tig0022713:-74887 | Msa1401670:CDS |
| AGCACAGCTTCCTGAAACGA+CGG | 0.523884 | tig0022713:+77118 | None:intergenic |
| TGTACAGATTCCTTCTCACT+AGG | 0.528667 | tig0022713:+74837 | None:intergenic |
| TTTGATAGTGCCAGAAAGCA+TGG | 0.529161 | tig0022713:-76372 | Msa1401670:CDS |
| TCGCGTTGGTCTTCTTTCTG+AGG | 0.530642 | tig0022713:-75947 | Msa1401670:CDS |
| CTCCGGTTCTGAACTAATTG+GGG | 0.530984 | tig0022713:+75329 | None:intergenic |
| TGTTGTTAATGTTCAGTGCA+AGG | 0.531806 | tig0022713:-75578 | Msa1401670:CDS |
| AGAGGGTCCATCCCTCCAGC+TGG | 0.533239 | tig0022713:+74598 | None:intergenic |
| CCTTTATCCAGCTGGAGGGA+TGG | 0.539543 | tig0022713:-74605 | Msa1401670:three_prime_UTR |
| GAAAATGACCTTTATCCAGC+TGG | 0.541468 | tig0022713:-74613 | Msa1401670:three_prime_UTR |
| AAAGGACAGAGAGAGTGAGA+AGG | 0.542628 | tig0022713:-77293 | Msa1401670:five_prime_UTR |
| GTCTCCGGTGGTAGTTATGT+CGG | 0.542647 | tig0022713:+75054 | None:intergenic |
| GAGAGGGAAGATCAATCAGT+TGG | 0.543799 | tig0022713:-74893 | Msa1401670:CDS |
| CTGTTATACATCCTGAAAGA+AGG | 0.544238 | tig0022713:-75711 | Msa1401670:CDS |
| GATTCTTTGGTGGCACAGAA+AGG | 0.549018 | tig0022713:-74480 | Msa1401670:three_prime_UTR |
| GATGGAATGGTCTTCATGTA+CGG | 0.550387 | tig0022713:-77030 | Msa1401670:CDS |
| ATCAATCAGTTGGAGTTGGA+GGG | 0.550430 | tig0022713:-74883 | Msa1401670:CDS |
| ATCTGTGCCCTTCAATTCCA+AGG | 0.552997 | tig0022713:+75969 | None:intergenic |
| AAGGGTTGACCAAGCATACA+TGG | 0.554392 | tig0022713:-75476 | Msa1401670:intron |
| CATCTCTGGGACATCTATTG+AGG | 0.555516 | tig0022713:-75827 | Msa1401670:CDS |
| CAAGTTTAGTTCTGAAACGC+CGG | 0.562418 | tig0022713:-75638 | Msa1401670:CDS |
| ATGTTAAAGACAGCATCTCT+GGG | 0.565140 | tig0022713:-75840 | Msa1401670:CDS |
| CACCACATCACATTGCAGCT+CGG | 0.565793 | tig0022713:+75909 | None:intergenic |
| GCTACTAAGATAAGATGGAA+TGG | 0.566013 | tig0022713:-77043 | Msa1401670:exon |
| AAGTAACTACCATGTATGCT+TGG | 0.571806 | tig0022713:+75467 | None:intergenic |
| CAATTCTGTACAGTCACTAC+CGG | 0.573952 | tig0022713:+75619 | None:intergenic |
| TGTAGAATATGATTCTTTGG+TGG | 0.574287 | tig0022713:-74490 | Msa1401670:three_prime_UTR |
| ATGTATAACAGCATCAGAGA+TGG | 0.579130 | tig0022713:+75723 | None:intergenic |
| AAGTCATCAAAAGGTAGAGA+GGG | 0.580764 | tig0022713:-74909 | Msa1401670:CDS |
| CAAGTCATCAAAAGGTAGAG+AGG | 0.580801 | tig0022713:-74910 | Msa1401670:CDS |
| CGTAAGAGTTAGTATTTGCG+TGG | 0.584328 | tig0022713:+74243 | None:intergenic |
| AGAAAGGAAGATTAGGTAGA+GGG | 0.587395 | tig0022713:-74464 | Msa1401670:three_prime_UTR |
| TCAATCAGTTGGAGTTGGAG+GGG | 0.591152 | tig0022713:-74882 | Msa1401670:CDS |
| CTCTTGGAAGCCTAGTGAGA+AGG | 0.591708 | tig0022713:-74847 | Msa1401670:CDS |
| TAATAATCTTCAATAATCCT+CGG | 0.593923 | tig0022713:+77070 | None:intergenic |
| GCTGCAATGTGATGTGGTGG+AGG | 0.598200 | tig0022713:-75905 | Msa1401670:CDS |
| CTCACTGCCTTGGAATTGAA+GGG | 0.602145 | tig0022713:-75976 | Msa1401670:CDS |
| GTCTTTAACATAAATTAAGG+AGG | 0.602985 | tig0022713:+75852 | None:intergenic |
| TTACTAGAAATTCCAAGCGG+TGG | 0.604680 | tig0022713:+77204 | None:intergenic |
| CCCTTGTGTTGATAGTTGCA+TGG | 0.605571 | tig0022713:+75494 | None:intergenic |
| GCAGAAAGATAAGGGCGTGA+GGG | 0.608985 | tig0022713:-74784 | Msa1401670:three_prime_UTR |
| AAAGCACATTTAAAATGGAG+AGG | 0.609825 | tig0022713:+74580 | None:intergenic |
| TCACTTAGTAGCATTTACAA+TGG | 0.611593 | tig0022713:-76021 | Msa1401670:CDS |
| GAATCTTTCTATGTATAGAA+GGG | 0.611652 | tig0022713:+77178 | None:intergenic |
| CAAAGCCCAAACTTGAAGCA+AGG | 0.617938 | tig0022713:+74713 | None:intergenic |
| GGTCTGCAAACATCATTTGG+TGG | 0.620069 | tig0022713:+75686 | None:intergenic |
| TTGGATTCATCTGATAATCA+CGG | 0.620667 | tig0022713:+75665 | None:intergenic |
| AAGCACATTTAAAATGGAGA+GGG | 0.627278 | tig0022713:+74581 | None:intergenic |
| AGCAGAAAGATAAGGGCGTG+AGG | 0.630544 | tig0022713:-74785 | Msa1401670:three_prime_UTR |
| AAGGAAGATTAGGTAGAGGG+AGG | 0.632537 | tig0022713:-74461 | Msa1401670:three_prime_UTR |
| TTGAAGGGCACAGATCGCGT+TGG | 0.633204 | tig0022713:-75961 | Msa1401670:CDS |
| TGTGTGCAATTTAACAGACA+TGG | 0.633650 | tig0022713:-75530 | Msa1401670:CDS |
| CGAGCTGCAATGTGATGTGG+TGG | 0.634692 | tig0022713:-75908 | Msa1401670:CDS |
| CTATGCACTGAAGACAGACA+AGG | 0.636939 | tig0022713:-75133 | Msa1401670:CDS |
| AATGACCTTTATCCAGCTGG+AGG | 0.638358 | tig0022713:-74610 | Msa1401670:three_prime_UTR |
| GGCCGAGCTGCAATGTGATG+TGG | 0.638970 | tig0022713:-75911 | Msa1401670:CDS |
| CGTGCCGACATAACTACCAC+CGG | 0.642054 | tig0022713:-75058 | Msa1401670:CDS |
| TCCATGCAACTATCAACACA+AGG | 0.643713 | tig0022713:-75495 | Msa1401670:CDS |
| CAGACAAGGGCTTCTCGCCG+AGG | 0.655196 | tig0022713:-75119 | Msa1401670:CDS |
| GGATTGCGTTTGGAAGAGAG+TGG | 0.657477 | tig0022713:-77326 | Msa1401670:five_prime_UTR |
| GTACAGAATTGGGCAGAAAG+GGG | 0.660005 | tig0022713:-75607 | Msa1401670:CDS |
| ATGACCTTTATCCAGCTGGA+GGG | 0.662517 | tig0022713:-74609 | Msa1401670:three_prime_UTR |
| GCAAGCATTGAATCACACGA+TGG | 0.664874 | tig0022713:+75304 | None:intergenic |
| GATGGAAGATGGTTCATGGA+TGG | 0.664920 | tig0022713:-76279 | Msa1401670:intron |
| TCGGAATGTTCTCATCACCT+CGG | 0.665865 | tig0022713:+75102 | None:intergenic |
| GGAGAGTTAAGATCAAGGCG+AGG | 0.672892 | tig0022713:-77347 | Msa1401670:five_prime_UTR |
| TAATCTTCAATAATCCTCGG+TGG | 0.688570 | tig0022713:+77073 | None:intergenic |
| ATTTGCAGCCAAGTCTCCGG+TGG | 0.688653 | tig0022713:+75042 | None:intergenic |
| GCTAAAGTATGGACTCACAA+TGG | 0.689830 | tig0022713:-75883 | Msa1401670:CDS |
| CATCCTATTGGATCTCGATG+CGG | 0.697688 | tig0022713:+74267 | None:intergenic |
| TATGCACTGAAGACAGACAA+GGG | 0.701710 | tig0022713:-75132 | Msa1401670:CDS |
| AGTAGAGAGAAGATCATGCG+AGG | 0.712972 | tig0022713:-75274 | Msa1401670:intron |
| CCATGCAACTATCAACACAA+GGG | 0.731496 | tig0022713:-75494 | Msa1401670:CDS |
| AAGTTACTAGAAATTCCAAG+CGG | 0.792461 | tig0022713:+77201 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGTTAAAAATAATTTTGT+CGG | + | tig0022713:74985-75004 | None:intergenic | 10.0% |
| !!! | TAATTTTTACATCATTAATT+AGG | + | tig0022713:76170-76189 | None:intergenic | 10.0% |
| !!! | GTAAAAATTATTTTTATTTC+AGG | - | tig0022713:76180-76199 | Msa1401670:intron | 10.0% |
| !!! | ATTTGCATTTAACTTTTTTA+TGG | - | tig0022713:74668-74687 | Msa1401670:three_prime_UTR | 15.0% |
| !! | AAATCAATTATAGAAAAAGT+TGG | + | tig0022713:74959-74978 | None:intergenic | 15.0% |
| !! | AGAAAATTCCTTAATTAATT+TGG | - | tig0022713:75104-75123 | Msa1401670:CDS | 15.0% |
| !! | GAAAATTCCTTAATTAATTT+GGG | - | tig0022713:75105-75124 | Msa1401670:CDS | 15.0% |
| !! | CATTAAACAACAAAAAATTA+GGG | + | tig0022713:75358-75377 | None:intergenic | 15.0% |
| !! | ACATTAAACAACAAAAAATT+AGG | + | tig0022713:75359-75378 | None:intergenic | 15.0% |
| !! | AAACAAAGAATTTAGATTTA+TGG | + | tig0022713:75506-75525 | None:intergenic | 15.0% |
| !!! | ATAATGCAATGTTTTTTTTT+TGG | - | tig0022713:76126-76145 | Msa1401670:intron | 15.0% |
| !! | ATCTTAATATATTCATATCA+CGG | + | tig0022713:76363-76382 | None:intergenic | 15.0% |
| !! | TGTACATATTAAAAAAGTAA+AGG | - | tig0022713:76869-76888 | Msa1401670:intron | 15.0% |
| !! | GTACATATTAAAAAAGTAAA+GGG | - | tig0022713:76870-76889 | Msa1401670:intron | 15.0% |
| !! | TAATAATCTTCAATAATCCT+CGG | + | tig0022713:74492-74511 | None:intergenic | 20.0% |
| !! | ATTCAGAAAAATTTGATTGA+AGG | + | tig0022713:74715-74734 | None:intergenic | 20.0% |
| !! | AAACCAGATATTAATTTCAA+GGG | - | tig0022713:74763-74782 | Msa1401670:three_prime_UTR | 20.0% |
| !! | CATATGCTTTCTTAATAAAA+AGG | + | tig0022713:75252-75271 | None:intergenic | 20.0% |
| !!! | AATTTTTCAATCTTGTTCAT+TGG | - | tig0022713:75309-75328 | Msa1401670:CDS | 20.0% |
| !!! | CGTTTTAAAATATATTGAAC+AGG | - | tig0022713:75429-75448 | Msa1401670:intron | 20.0% |
| !! | GTTAAGCAATTTAAAAGTAA+AGG | - | tig0022713:76614-76633 | Msa1401670:intron | 20.0% |
| ! | GAATCTTTCTATGTATAGAA+GGG | + | tig0022713:74384-74403 | None:intergenic | 25.0% |
| ! | TGAATCTTTCTATGTATAGA+AGG | + | tig0022713:74385-74404 | None:intergenic | 25.0% |
| ! | AAACATTGAAAAGAGAAAGA+AGG | + | tig0022713:74606-74625 | None:intergenic | 25.0% |
| ! | AAGTTAAATGCAAATGAATC+AGG | + | tig0022713:74663-74682 | None:intergenic | 25.0% |
| !! | ATATCTGGTTTCAAAACTAA+GGG | + | tig0022713:74754-74773 | None:intergenic | 25.0% |
| !! | AATATCTGGTTTCAAAACTA+AGG | + | tig0022713:74755-74774 | None:intergenic | 25.0% |
| ! | GAAACCAGATATTAATTTCA+AGG | - | tig0022713:74762-74781 | Msa1401670:three_prime_UTR | 25.0% |
| ! | AAACCCTTGAAATTAATATC+TGG | + | tig0022713:74769-74788 | None:intergenic | 25.0% |
| ! | TCAATTATAGAAAAAGTTGG+TGG | + | tig0022713:74956-74975 | None:intergenic | 25.0% |
| !! | TTTTCGTGTTTGAAAAAAAC+AGG | - | tig0022713:75024-75043 | Msa1401670:CDS | 25.0% |
| ! | TTTCGTGTTTGAAAAAAACA+GGG | - | tig0022713:75025-75044 | Msa1401670:CDS | 25.0% |
| ! | TATAGTTGAATTGGAACAAA+CGG | + | tig0022713:75066-75085 | None:intergenic | 25.0% |
| ! | GTGTAAACCCAAATTAATTA+AGG | + | tig0022713:75115-75134 | None:intergenic | 25.0% |
| !!! | TAACTTGTTTCCATTTTGAT+CGG | + | tig0022713:75398-75417 | None:intergenic | 25.0% |
| ! | ATATATTGAACAGGTACTAA+TGG | - | tig0022713:75438-75457 | Msa1401670:intron | 25.0% |
| ! | GGAAAAACAAATCATAGAAA+TGG | - | tig0022713:75559-75578 | Msa1401670:CDS | 25.0% |
| ! | GTCTTTAACATAAATTAAGG+AGG | + | tig0022713:75710-75729 | None:intergenic | 25.0% |
| ! | GCTGTCTTTAACATAAATTA+AGG | + | tig0022713:75713-75732 | None:intergenic | 25.0% |
| ! | AGGATTCTCAGAAAATTAAT+CGG | - | tig0022713:75752-75771 | Msa1401670:CDS | 25.0% |
| !!! | CGTTTAAGATATGTTTTACA+AGG | - | tig0022713:75784-75803 | Msa1401670:CDS | 25.0% |
| ! | TCAGAACTAAACTTGAAAAT+TGG | + | tig0022713:75916-75935 | None:intergenic | 25.0% |
| !! | TTTTACATTAGACATAAGGA+TGG | - | tig0022713:76205-76224 | Msa1401670:intron | 25.0% |
| ! | ATTGTTAATTTCTTGAATGC+AGG | - | tig0022713:76389-76408 | Msa1401670:intron | 25.0% |
| ! | TTGTTAATTTCTTGAATGCA+GGG | - | tig0022713:76390-76409 | Msa1401670:intron | 25.0% |
| ! | AATCAGTTCGTCAAAAAATT+GGG | - | tig0022713:76592-76611 | Msa1401670:intron | 25.0% |
| ! | TTCTTAAAGCAGAAAGATAA+GGG | - | tig0022713:76767-76786 | Msa1401670:intron | 25.0% |
| !!! | AGTTGTTTTTTTTCTTCACT+TGG | - | tig0022713:76898-76917 | Msa1401670:intron | 25.0% |
| !! | AAGGATTTGCATTTTGTAAT+AGG | - | tig0022713:77015-77034 | Msa1401670:CDS | 25.0% |
| ! | GAATGTAGAATATGATTCTT+TGG | - | tig0022713:77066-77085 | Msa1401670:five_prime_UTR | 25.0% |
| ! | TTTTATGACGATTTGATCGA+AGG | - | tig0022713:74314-74333 | Msa1401670:three_prime_UTR | 30.0% |
| AAGTTACTAGAAATTCCAAG+CGG | + | tig0022713:74361-74380 | None:intergenic | 30.0% | |
| ! | TACTTTAAAAAAAACCACCG+AGG | - | tig0022713:74472-74491 | Msa1401670:three_prime_UTR | 30.0% |
| ATCAAGCTACTAAGATAAGA+TGG | - | tig0022713:74511-74530 | Msa1401670:three_prime_UTR | 30.0% | |
| TGATTGAAGGATGAAGAAAA+TGG | + | tig0022713:74702-74721 | None:intergenic | 30.0% | |
| TTCTCTTGAGATTTCTTCTA+AGG | - | tig0022713:74808-74827 | Msa1401670:CDS | 30.0% | |
| AAGCAAAAAGAGGTTTGAAT+CGG | + | tig0022713:74836-74855 | None:intergenic | 30.0% | |
| !! | AGAAAAAGTTGGTGGAAATT+AGG | + | tig0022713:74948-74967 | None:intergenic | 30.0% |
| TTCCAATTCAACTATAGTCA+AGG | - | tig0022713:75070-75089 | Msa1401670:CDS | 30.0% | |
| TACCTTGACTATAGTTGAAT+TGG | + | tig0022713:75075-75094 | None:intergenic | 30.0% | |
| AAAGCATATGTTTCATCTGA+TGG | - | tig0022713:75262-75281 | Msa1401670:intron | 30.0% | |
| TTTCATGTTACCGATCAAAA+TGG | - | tig0022713:75385-75404 | Msa1401670:intron | 30.0% | |
| TCACTTAGTAGCATTTACAA+TGG | - | tig0022713:75538-75557 | Msa1401670:CDS | 30.0% | |
| TACAAGGAGATAGTGATATT+AGG | - | tig0022713:75800-75819 | Msa1401670:CDS | 30.0% | |
| TTGGATTCATCTGATAATCA+CGG | + | tig0022713:75897-75916 | None:intergenic | 30.0% | |
| ! | GGAGTTTTACATTAGACATA+AGG | - | tig0022713:76201-76220 | Msa1401670:intron | 30.0% |
| !!! | GAACTGATTCGATGATTTTT+TGG | + | tig0022713:76581-76600 | None:intergenic | 30.0% |
| GAATCAGTTCGTCAAAAAAT+TGG | - | tig0022713:76591-76610 | Msa1401670:intron | 30.0% | |
| AGAAGGAATCTGTACAATTT+GGG | - | tig0022713:76729-76748 | Msa1401670:intron | 30.0% | |
| GTTCTTAAAGCAGAAAGATA+AGG | - | tig0022713:76766-76785 | Msa1401670:intron | 30.0% | |
| ! | ATTATTCCTTGCTTCAAGTT+TGG | - | tig0022713:76840-76859 | Msa1401670:intron | 30.0% |
| ! | TTATTCCTTGCTTCAAGTTT+GGG | - | tig0022713:76841-76860 | Msa1401670:intron | 30.0% |
| !!! | GTTTTTTTTCTTCACTTGGT+TGG | - | tig0022713:76902-76921 | Msa1401670:intron | 30.0% |
| ! | AAGCACATTTAAAATGGAGA+GGG | + | tig0022713:76981-77000 | None:intergenic | 30.0% |
| ! | AAAGCACATTTAAAATGGAG+AGG | + | tig0022713:76982-77001 | None:intergenic | 30.0% |
| CAAGCAAAGCACATTTAAAA+TGG | + | tig0022713:76987-77006 | None:intergenic | 30.0% | |
| AATAGGTTGTTATCCATAGT+AGG | - | tig0022713:77032-77051 | Msa1401670:CDS | 30.0% | |
| TGTAGAATATGATTCTTTGG+TGG | - | tig0022713:77069-77088 | Msa1401670:five_prime_UTR | 30.0% | |
| !!! | TGAAAGATTGCTGTGTTTTT+TGG | - | tig0022713:77255-77274 | Msa1401670:five_prime_UTR | 30.0% |
| ACTAACTCTTACGTAAATTG+TGG | - | tig0022713:77326-77345 | Msa1401670:five_prime_UTR | 30.0% | |
| CTAACTCTTACGTAAATTGT+GGG | - | tig0022713:77327-77346 | Msa1401670:five_prime_UTR | 30.0% | |
| TAATCTTCAATAATCCTCGG+TGG | + | tig0022713:74489-74508 | None:intergenic | 35.0% | |
| GCTACTAAGATAAGATGGAA+TGG | - | tig0022713:74516-74535 | Msa1401670:three_prime_UTR | 35.0% | |
| CAAAAGAATTCCATGCTTTC+TGG | + | tig0022713:75200-75219 | None:intergenic | 35.0% | |
| !! | CAGAAAGCATGGAATTCTTT+TGG | - | tig0022713:75198-75217 | Msa1401670:intron | 35.0% |
| ATGTTTCATCTGATGGAAGA+TGG | - | tig0022713:75269-75288 | Msa1401670:intron | 35.0% | |
| CATAAATTAAGGAGGCTGTT+CGG | + | tig0022713:75702-75721 | None:intergenic | 35.0% | |
| TATGTTAAAGACAGCATCTC+TGG | - | tig0022713:75718-75737 | Msa1401670:CDS | 35.0% | |
| ATGTTAAAGACAGCATCTCT+GGG | - | tig0022713:75719-75738 | Msa1401670:CDS | 35.0% | |
| ATGTATAACAGCATCAGAGA+TGG | + | tig0022713:75839-75858 | None:intergenic | 35.0% | |
| CTGTTATACATCCTGAAAGA+AGG | - | tig0022713:75848-75867 | Msa1401670:CDS | 35.0% | |
| TGTTGTTAATGTTCAGTGCA+AGG | - | tig0022713:75981-76000 | Msa1401670:CDS | 35.0% | |
| TGTGTGCAATTTAACAGACA+TGG | - | tig0022713:76029-76048 | Msa1401670:intron | 35.0% | |
| AAGTAACTACCATGTATGCT+TGG | + | tig0022713:76095-76114 | None:intergenic | 35.0% | |
| !! | ACCTTTTGATGACTTGCAAA+AGG | + | tig0022713:76645-76664 | None:intergenic | 35.0% |
| AAGTCATCAAAAGGTAGAGA+GGG | - | tig0022713:76650-76669 | Msa1401670:intron | 35.0% | |
| GAGAAGGAATCTGTACAATT+TGG | - | tig0022713:76728-76747 | Msa1401670:intron | 35.0% | |
| ! | TTTTCTTCACTTGGTTGGAT+TGG | - | tig0022713:76907-76926 | Msa1401670:intron | 35.0% |
| ! | TTGGTTGGATTGGATTCATT+TGG | - | tig0022713:76917-76936 | Msa1401670:intron | 35.0% |
| GATTGGATTCATTTGGTATG+TGG | - | tig0022713:76924-76943 | Msa1401670:intron | 35.0% | |
| TGCTTTGCTTGAAGAAAAGA+AGG | - | tig0022713:76996-77015 | Msa1401670:CDS | 35.0% | |
| ATCCATAGTAGGTTGTGAAA+AGG | - | tig0022713:77043-77062 | Msa1401670:exon | 35.0% | |
| TCCATAGTAGGTTGTGAAAA+GGG | - | tig0022713:77044-77063 | Msa1401670:exon | 35.0% | |
| AGAAAGGAAGATTAGGTAGA+GGG | - | tig0022713:77095-77114 | Msa1401670:five_prime_UTR | 35.0% | |
| GAGAGTGGAAAGATAGAGAA+AGG | - | tig0022713:74248-74267 | Msa1401670:three_prime_UTR | 40.0% | |
| TGAGAAGGAATAGGAGAGTT+TGG | - | tig0022713:74281-74300 | Msa1401670:three_prime_UTR | 40.0% | |
| ATAGGAGAGTTTGGTAAGAG+TGG | - | tig0022713:74290-74309 | Msa1401670:three_prime_UTR | 40.0% | |
| TAGGAGAGTTTGGTAAGAGT+GGG | - | tig0022713:74291-74310 | Msa1401670:three_prime_UTR | 40.0% | |
| TTACTAGAAATTCCAAGCGG+TGG | + | tig0022713:74358-74377 | None:intergenic | 40.0% | |
| GATGGAATGGTCTTCATGTA+CGG | - | tig0022713:74529-74548 | Msa1401670:three_prime_UTR | 40.0% | |
| GGTTTCAAAACTAAGGGATC+TGG | + | tig0022713:74748-74767 | None:intergenic | 40.0% | |
| !! | TTTGATAGTGCCAGAAAGCA+TGG | - | tig0022713:75187-75206 | Msa1401670:intron | 40.0% |
| ATCTGATGGAAGATGGTTCA+TGG | - | tig0022713:75276-75295 | Msa1401670:CDS | 40.0% | |
| !! | TTCTGAGGTGTTTGCTGTAT+TGG | - | tig0022713:75627-75646 | Msa1401670:CDS | 40.0% |
| GCTAAAGTATGGACTCACAA+TGG | - | tig0022713:75676-75695 | Msa1401670:CDS | 40.0% | |
| !! | CAAGTTTAGTTCTGAAACGC+CGG | - | tig0022713:75921-75940 | Msa1401670:CDS | 40.0% |
| CAATTCTGTACAGTCACTAC+CGG | + | tig0022713:75943-75962 | None:intergenic | 40.0% | |
| GGTAGTGACTGTACAGAATT+GGG | - | tig0022713:75942-75961 | Msa1401670:CDS | 40.0% | |
| TGTACAGAATTGGGCAGAAA+GGG | - | tig0022713:75951-75970 | Msa1401670:CDS | 40.0% | |
| TCCATGCAACTATCAACACA+AGG | - | tig0022713:76064-76083 | Msa1401670:intron | 40.0% | |
| CCATGCAACTATCAACACAA+GGG | - | tig0022713:76065-76084 | Msa1401670:intron | 40.0% | |
| AACCCCAATTAGTTCAGAAC+CGG | - | tig0022713:76228-76247 | Msa1401670:intron | 40.0% | |
| ! | TTTCTTGAATGCAGGGTGTT+AGG | - | tig0022713:76397-76416 | Msa1401670:intron | 40.0% |
| TATGCACTGAAGACAGACAA+GGG | - | tig0022713:76427-76446 | Msa1401670:intron | 40.0% | |
| ATGAGAACATTCCGAGAGAA+CGG | - | tig0022713:76465-76484 | Msa1401670:intron | 40.0% | |
| TTACATTCAACCCGTTCTCT+CGG | + | tig0022713:76479-76498 | None:intergenic | 40.0% | |
| TTCTATGCAACAGATGCCAT+TGG | - | tig0022713:76543-76562 | Msa1401670:intron | 40.0% | |
| !!! | CGATGATTTTTTGGTCAGCT+GGG | + | tig0022713:76572-76591 | None:intergenic | 40.0% |
| !!! | TCGATGATTTTTTGGTCAGC+TGG | + | tig0022713:76573-76592 | None:intergenic | 40.0% |
| ! | GCCTTTTGCAAGTCATCAAA+AGG | - | tig0022713:76641-76660 | Msa1401670:intron | 40.0% |
| CAAGTCATCAAAAGGTAGAG+AGG | - | tig0022713:76649-76668 | Msa1401670:intron | 40.0% | |
| GAAGATCAATCAGTTGGAGT+TGG | - | tig0022713:76672-76691 | Msa1401670:intron | 40.0% | |
| ATCAATCAGTTGGAGTTGGA+GGG | - | tig0022713:76676-76695 | Msa1401670:intron | 40.0% | |
| TGTACAGATTCCTTCTCACT+AGG | + | tig0022713:76725-76744 | None:intergenic | 40.0% | |
| !!! | GTGAGGGAATTTTTTGAGTG+TGG | - | tig0022713:76791-76810 | Msa1401670:intron | 40.0% |
| GAAAATGACCTTTATCCAGC+TGG | - | tig0022713:76946-76965 | Msa1401670:intron | 40.0% | |
| ! | TCCCTTTTCACAACCTACTA+TGG | + | tig0022713:77048-77067 | None:intergenic | 40.0% |
| CAGAAAGGAAGATTAGGTAG+AGG | - | tig0022713:77094-77113 | Msa1401670:five_prime_UTR | 40.0% | |
| AGGGAGGAACAATTTGGATT+GGG | - | tig0022713:77114-77133 | Msa1401670:five_prime_UTR | 40.0% | |
| ATCTTTCATGAGCGTGCATA+AGG | + | tig0022713:77243-77262 | None:intergenic | 40.0% | |
| TATTTGCGTGGACATCCTAT+TGG | + | tig0022713:77307-77326 | None:intergenic | 40.0% | |
| CGTAAGAGTTAGTATTTGCG+TGG | + | tig0022713:77319-77338 | None:intergenic | 40.0% | |
| AAAGGACAGAGAGAGTGAGA+AGG | - | tig0022713:74266-74285 | Msa1401670:three_prime_UTR | 45.0% | |
| CAGAGAGAGTGAGAAGGAAT+AGG | - | tig0022713:74272-74291 | Msa1401670:three_prime_UTR | 45.0% | |
| ATGCATTAAAAGCCACCGCT+TGG | - | tig0022713:74343-74362 | Msa1401670:three_prime_UTR | 45.0% | |
| TGTCTCATAACCGTCGTTTC+AGG | - | tig0022713:74431-74450 | Msa1401670:three_prime_UTR | 45.0% | |
| ! | TTTTTCGCATGAGCACTCCT+AGG | - | tig0022713:74570-74589 | Msa1401670:three_prime_UTR | 45.0% |
| AAGAAGGAAGACACGAACCT+AGG | + | tig0022713:74590-74609 | None:intergenic | 45.0% | |
| TGAGGTACGCAAGCAAAAAG+AGG | + | tig0022713:74846-74865 | None:intergenic | 45.0% | |
| GATGGAAGATGGTTCATGGA+TGG | - | tig0022713:75280-75299 | Msa1401670:CDS | 45.0% | |
| TAGAAATGGTCTCACTGCCT+TGG | - | tig0022713:75573-75592 | Msa1401670:CDS | 45.0% | |
| TCTCACTGCCTTGGAATTGA+AGG | - | tig0022713:75582-75601 | Msa1401670:CDS | 45.0% | |
| CTCACTGCCTTGGAATTGAA+GGG | - | tig0022713:75583-75602 | Msa1401670:CDS | 45.0% | |
| ATCTGTGCCCTTCAATTCCA+AGG | + | tig0022713:75593-75612 | None:intergenic | 45.0% | |
| ! | ATGTGGTGGAGGCTAAAGTA+TGG | - | tig0022713:75665-75684 | Msa1401670:CDS | 45.0% |
| !! | CATCTCTGGGACATCTATTG+AGG | - | tig0022713:75732-75751 | Msa1401670:CDS | 45.0% |
| ! | ATTTGGTGGAGCCTTCTTTC+AGG | + | tig0022713:75862-75881 | None:intergenic | 45.0% |
| GGTCTGCAAACATCATTTGG+TGG | + | tig0022713:75876-75895 | None:intergenic | 45.0% | |
| CACGGTCTGCAAACATCATT+TGG | + | tig0022713:75879-75898 | None:intergenic | 45.0% | |
| CGGTAGTGACTGTACAGAAT+TGG | - | tig0022713:75941-75960 | Msa1401670:CDS | 45.0% | |
| CTGTACAGAATTGGGCAGAA+AGG | - | tig0022713:75950-75969 | Msa1401670:CDS | 45.0% | |
| GTACAGAATTGGGCAGAAAG+GGG | - | tig0022713:75952-75971 | Msa1401670:CDS | 45.0% | |
| !! | CCCTTGTGTTGATAGTTGCA+TGG | + | tig0022713:76068-76087 | None:intergenic | 45.0% |
| AAGGGTTGACCAAGCATACA+TGG | - | tig0022713:76083-76102 | Msa1401670:intron | 45.0% | |
| !! | CTCCGGTTCTGAACTAATTG+GGG | + | tig0022713:76233-76252 | None:intergenic | 45.0% |
| !! | GCTCCGGTTCTGAACTAATT+GGG | + | tig0022713:76234-76253 | None:intergenic | 45.0% |
| !! | GCAAGCATTGAATCACACGA+TGG | + | tig0022713:76258-76277 | None:intergenic | 45.0% |
| AGTAGAGAGAAGATCATGCG+AGG | - | tig0022713:76285-76304 | Msa1401670:CDS | 45.0% | |
| AGAGAAGATCATGCGAGGTA+TGG | - | tig0022713:76290-76309 | Msa1401670:CDS | 45.0% | |
| CTATGCACTGAAGACAGACA+AGG | - | tig0022713:76426-76445 | Msa1401670:intron | 45.0% | |
| TCGGAATGTTCTCATCACCT+CGG | + | tig0022713:76460-76479 | None:intergenic | 45.0% | |
| TGAGAACATTCCGAGAGAAC+GGG | - | tig0022713:76466-76485 | Msa1401670:intron | 45.0% | |
| AACATTTGCAGCCAAGTCTC+CGG | + | tig0022713:76523-76542 | None:intergenic | 45.0% | |
| GAGAGGGAAGATCAATCAGT+TGG | - | tig0022713:76666-76685 | Msa1401670:intron | 45.0% | |
| GATCAATCAGTTGGAGTTGG+AGG | - | tig0022713:76675-76694 | Msa1401670:intron | 45.0% | |
| TCAATCAGTTGGAGTTGGAG+GGG | - | tig0022713:76677-76696 | Msa1401670:intron | 45.0% | |
| CAAAGCCCAAACTTGAAGCA+AGG | + | tig0022713:76849-76868 | None:intergenic | 45.0% | |
| AATGACCTTTATCCAGCTGG+AGG | - | tig0022713:76949-76968 | Msa1401670:intron | 45.0% | |
| ATGACCTTTATCCAGCTGGA+GGG | - | tig0022713:76950-76969 | Msa1401670:intron | 45.0% | |
| ! | GATTCTTTGGTGGCACAGAA+AGG | - | tig0022713:77079-77098 | Msa1401670:five_prime_UTR | 45.0% |
| GTGGCACAGAAAGGAAGATT+AGG | - | tig0022713:77088-77107 | Msa1401670:five_prime_UTR | 45.0% | |
| AAGGAAGATTAGGTAGAGGG+AGG | - | tig0022713:77098-77117 | Msa1401670:five_prime_UTR | 45.0% | |
| AGGTAGAGGGAGGAACAATT+TGG | - | tig0022713:77108-77127 | Msa1401670:five_prime_UTR | 45.0% | |
| GAGGGAGGAACAATTTGGAT+TGG | - | tig0022713:77113-77132 | Msa1401670:five_prime_UTR | 45.0% | |
| CATCCTATTGGATCTCGATG+CGG | + | tig0022713:77295-77314 | None:intergenic | 45.0% | |
| !! | TTTAAATTAATTAAAATTTG+AGG | + | tig0022713:74864-74883 | None:intergenic | 5.0% |
| ATCAAGGCGAGGATTGCGTT+TGG | - | tig0022713:74223-74242 | Msa1401670:three_prime_UTR | 50.0% | |
| GGATTGCGTTTGGAAGAGAG+TGG | - | tig0022713:74233-74252 | Msa1401670:three_prime_UTR | 50.0% | |
| AGCACAGCTTCCTGAAACGA+CGG | + | tig0022713:74444-74463 | None:intergenic | 50.0% | |
| !! | TCGCGTTGGTCTTCTTTCTG+AGG | - | tig0022713:75612-75631 | Msa1401670:CDS | 50.0% |
| CACCACATCACATTGCAGCT+CGG | + | tig0022713:75653-75672 | None:intergenic | 50.0% | |
| !! | CGCTCCGGTTCTGAACTAAT+TGG | + | tig0022713:76235-76254 | None:intergenic | 50.0% |
| GTCTCCGGTGGTAGTTATGT+CGG | + | tig0022713:76508-76527 | None:intergenic | 50.0% | |
| CATAACTACCACCGGAGACT+TGG | - | tig0022713:76509-76528 | Msa1401670:CDS | 50.0% | |
| TTGGTCAGCTGGGTATCCAA+TGG | + | tig0022713:76562-76581 | None:intergenic | 50.0% | |
| ! | GGGGCAGTGTTATTGTCTCT+TGG | - | tig0022713:76696-76715 | Msa1401670:intron | 50.0% |
| CTCTTGGAAGCCTAGTGAGA+AGG | - | tig0022713:76712-76731 | Msa1401670:intron | 50.0% | |
| ! | AGCAGAAAGATAAGGGCGTG+AGG | - | tig0022713:76774-76793 | Msa1401670:intron | 50.0% |
| ! | GCAGAAAGATAAGGGCGTGA+GGG | - | tig0022713:76775-76794 | Msa1401670:intron | 50.0% |
| GTACCGCATCGAGATCCAAT+AGG | - | tig0022713:77289-77308 | Msa1401670:five_prime_UTR | 50.0% | |
| ! | TTGAAGGGCACAGATCGCGT+TGG | - | tig0022713:75598-75617 | Msa1401670:CDS | 55.0% |
| CGAGCTGCAATGTGATGTGG+TGG | - | tig0022713:75651-75670 | Msa1401670:CDS | 55.0% | |
| GCTGCAATGTGATGTGGTGG+AGG | - | tig0022713:75654-75673 | Msa1401670:CDS | 55.0% | |
| TGAATCACACGATGGCGCTC+CGG | + | tig0022713:76250-76269 | None:intergenic | 55.0% | |
| ! | CGTGCCGACATAACTACCAC+CGG | - | tig0022713:76501-76520 | Msa1401670:CDS | 55.0% |
| ATTTGCAGCCAAGTCTCCGG+TGG | + | tig0022713:76520-76539 | None:intergenic | 55.0% | |
| CCATCCCTCCAGCTGGATAA+AGG | + | tig0022713:76957-76976 | None:intergenic | 55.0% | |
| CCTTTATCCAGCTGGAGGGA+TGG | - | tig0022713:76954-76973 | Msa1401670:intron | 55.0% | |
| GGCCGAGCTGCAATGTGATG+TGG | - | tig0022713:75648-75667 | Msa1401670:CDS | 60.0% | |
| CAGACAAGGGCTTCTCGCCG+AGG | - | tig0022713:76440-76459 | Msa1401670:intron | 65.0% | |
| AGAGGGTCCATCCCTCCAGC+TGG | + | tig0022713:76964-76983 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022713 | gene | 74215 | 77366 | 74215 | ID=Msa1401670;Name=Msa1401670 |
| tig0022713 | mRNA | 74215 | 77366 | 74215 | ID=Msa1401670-mRNA-1;Parent=Msa1401670;Name=Msa1401670-mRNA-1;_AED=0.07;_eAED=0.07;_QI=315|1|1|1|1|1|7|593|441 |
| tig0022713 | exon | 74215 | 75170 | 74215 | ID=Msa1401670-mRNA-1:exon:18496;Parent=Msa1401670-mRNA-1 |
| tig0022713 | exon | 75275 | 75379 | 75275 | ID=Msa1401670-mRNA-1:exon:18495;Parent=Msa1401670-mRNA-1 |
| tig0022713 | exon | 75477 | 76043 | 75477 | ID=Msa1401670-mRNA-1:exon:18494;Parent=Msa1401670-mRNA-1 |
| tig0022713 | exon | 76131 | 76198 | 76131 | ID=Msa1401670-mRNA-1:exon:18493;Parent=Msa1401670-mRNA-1 |
| tig0022713 | exon | 76280 | 76394 | 76280 | ID=Msa1401670-mRNA-1:exon:18492;Parent=Msa1401670-mRNA-1 |
| tig0022713 | exon | 76490 | 76535 | 76490 | ID=Msa1401670-mRNA-1:exon:18491;Parent=Msa1401670-mRNA-1 |
| tig0022713 | exon | 76990 | 77366 | 76990 | ID=Msa1401670-mRNA-1:exon:18490;Parent=Msa1401670-mRNA-1 |
| tig0022713 | five_prime_UTR | 77052 | 77366 | 77052 | ID=Msa1401670-mRNA-1:five_prime_utr;Parent=Msa1401670-mRNA-1 |
| tig0022713 | CDS | 76990 | 77051 | 76990 | ID=Msa1401670-mRNA-1:cds;Parent=Msa1401670-mRNA-1 |
| tig0022713 | CDS | 76490 | 76535 | 76490 | ID=Msa1401670-mRNA-1:cds;Parent=Msa1401670-mRNA-1 |
| tig0022713 | CDS | 76280 | 76394 | 76280 | ID=Msa1401670-mRNA-1:cds;Parent=Msa1401670-mRNA-1 |
| tig0022713 | CDS | 76131 | 76198 | 76131 | ID=Msa1401670-mRNA-1:cds;Parent=Msa1401670-mRNA-1 |
| tig0022713 | CDS | 75477 | 76043 | 75477 | ID=Msa1401670-mRNA-1:cds;Parent=Msa1401670-mRNA-1 |
| tig0022713 | CDS | 75275 | 75379 | 75275 | ID=Msa1401670-mRNA-1:cds;Parent=Msa1401670-mRNA-1 |
| tig0022713 | CDS | 74808 | 75170 | 74808 | ID=Msa1401670-mRNA-1:cds;Parent=Msa1401670-mRNA-1 |
| tig0022713 | three_prime_UTR | 74215 | 74807 | 74215 | ID=Msa1401670-mRNA-1:three_prime_utr;Parent=Msa1401670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
