Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610960 | XP_013456857.3 | 93.506 | 154 | 10 | 0 | 1 | 154 | 1 | 154 | 2.18e-92 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610960 | sp|Q5SLW9|DNAJ1_THET8 | 43.478 | 115 | 56 | 2 | 13 | 122 | 4 | 114 | 3.93e-19 | 85.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0610960 | Msa0610970 | 0.982497 | 3.033625e-155 | -8.615850e-47 |
| Msa0610960 | Msa0693730 | 0.883234 | 5.332260e-71 | -8.615850e-47 |
| Msa0610960 | Msa1039820 | 0.807607 | 4.653054e-50 | -8.615850e-47 |
| Msa0267580 | Msa0610960 | 0.866972 | 1.928399e-65 | -8.615850e-47 |
| Msa0578730 | Msa0610960 | 0.889796 | 1.756453e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610960 | MtrunA17_Chr4g0044331 | 93.506 | 154 | 10 | 0 | 1 | 154 | 1 | 154 | 2.00e-96 | 275 |
| Msa0610960 | MtrunA17_Chr7g0271891 | 62.069 | 116 | 42 | 1 | 13 | 128 | 17 | 130 | 8.64e-48 | 152 |
| Msa0610960 | MtrunA17_Chr8g0344721 | 45.968 | 124 | 63 | 3 | 5 | 125 | 3 | 125 | 1.42e-33 | 118 |
| Msa0610960 | MtrunA17_Chr3g0138471 | 44.828 | 87 | 41 | 2 | 13 | 95 | 5 | 88 | 1.82e-17 | 77.4 |
| Msa0610960 | MtrunA17_Chr2g0282741 | 48.571 | 70 | 33 | 1 | 9 | 78 | 1 | 67 | 7.68e-17 | 75.9 |
| Msa0610960 | MtrunA17_Chr2g0282761 | 53.030 | 66 | 28 | 1 | 13 | 78 | 5 | 67 | 1.07e-16 | 75.5 |
| Msa0610960 | MtrunA17_Chr5g0415731 | 40.404 | 99 | 54 | 2 | 10 | 103 | 3 | 101 | 1.14e-16 | 72.0 |
| Msa0610960 | MtrunA17_Chr4g0040501 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 1.55e-16 | 75.1 |
| Msa0610960 | MtrunA17_Chr1g0159491 | 52.941 | 68 | 28 | 1 | 13 | 80 | 7 | 70 | 2.78e-16 | 69.3 |
| Msa0610960 | MtrunA17_Chr4g0006391 | 48.485 | 66 | 31 | 1 | 13 | 78 | 5 | 67 | 5.42e-16 | 73.6 |
| Msa0610960 | MtrunA17_Chr4g0061421 | 49.254 | 67 | 34 | 0 | 13 | 79 | 9 | 75 | 2.43e-15 | 72.0 |
| Msa0610960 | MtrunA17_Chr7g0263971 | 52.941 | 68 | 29 | 1 | 13 | 80 | 370 | 434 | 3.39e-15 | 71.6 |
| Msa0610960 | MtrunA17_Chr2g0324921 | 47.143 | 70 | 34 | 1 | 9 | 78 | 1 | 67 | 4.01e-15 | 70.9 |
| Msa0610960 | MtrunA17_Chr5g0426951 | 50.746 | 67 | 29 | 1 | 12 | 78 | 83 | 145 | 8.00e-15 | 70.5 |
| Msa0610960 | MtrunA17_Chr7g0269841 | 53.731 | 67 | 27 | 2 | 12 | 78 | 26 | 88 | 1.29e-14 | 69.7 |
| Msa0610960 | MtrunA17_Chr1g0209551 | 44.286 | 70 | 35 | 1 | 14 | 83 | 18 | 83 | 9.98e-14 | 67.4 |
| Msa0610960 | MtrunA17_Chr1g0159511 | 52.941 | 68 | 28 | 1 | 11 | 78 | 5 | 68 | 1.13e-13 | 67.0 |
| Msa0610960 | MtrunA17_Chr4g0021141 | 45.455 | 66 | 32 | 1 | 13 | 78 | 23 | 84 | 1.47e-13 | 63.5 |
| Msa0610960 | MtrunA17_Chr8g0334811 | 44.304 | 79 | 32 | 2 | 4 | 78 | 2 | 72 | 1.75e-13 | 66.6 |
| Msa0610960 | MtrunA17_Chr5g0399201 | 47.692 | 65 | 33 | 1 | 14 | 78 | 14 | 77 | 4.15e-13 | 65.9 |
| Msa0610960 | MtrunA17_Chr3g0123861 | 49.315 | 73 | 28 | 3 | 13 | 81 | 83 | 150 | 6.36e-13 | 65.1 |
| Msa0610960 | MtrunA17_Chr6g0478651 | 36.607 | 112 | 58 | 4 | 13 | 116 | 69 | 175 | 7.09e-13 | 65.1 |
| Msa0610960 | MtrunA17_Chr5g0427221 | 48.529 | 68 | 31 | 1 | 13 | 80 | 49 | 112 | 9.30e-13 | 62.0 |
| Msa0610960 | MtrunA17_Chr4g0010781 | 45.333 | 75 | 37 | 1 | 4 | 78 | 78 | 148 | 9.75e-13 | 64.7 |
| Msa0610960 | MtrunA17_Chr2g0333221 | 50.725 | 69 | 29 | 2 | 10 | 78 | 68 | 131 | 1.08e-12 | 64.3 |
| Msa0610960 | MtrunA17_Chr3g0087741 | 41.333 | 75 | 40 | 1 | 4 | 78 | 81 | 151 | 2.15e-12 | 63.5 |
| Msa0610960 | MtrunA17_Chr8g0378161 | 43.284 | 67 | 36 | 1 | 12 | 78 | 60 | 124 | 2.96e-12 | 61.6 |
| Msa0610960 | MtrunA17_Chr6g0460461 | 38.806 | 67 | 40 | 1 | 13 | 78 | 3 | 69 | 3.44e-12 | 61.6 |
| Msa0610960 | MtrunA17_Chr1g0173931 | 44.118 | 68 | 34 | 2 | 11 | 78 | 37 | 100 | 2.38e-11 | 60.1 |
| Msa0610960 | MtrunA17_Chr5g0393371 | 47.826 | 69 | 32 | 1 | 11 | 79 | 5 | 69 | 2.83e-11 | 60.5 |
| Msa0610960 | MtrunA17_Chr5g0414471 | 37.975 | 79 | 45 | 1 | 14 | 92 | 27 | 101 | 3.43e-11 | 60.1 |
| Msa0610960 | MtrunA17_Chr7g0258061 | 44.776 | 67 | 33 | 2 | 12 | 78 | 22 | 84 | 4.36e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610960 | AT1G71000.1 | 59.231 | 130 | 51 | 1 | 6 | 135 | 2 | 129 | 1.55e-47 | 152 |
| Msa0610960 | AT1G71000.2 | 55.932 | 118 | 50 | 1 | 6 | 123 | 2 | 117 | 1.22e-41 | 137 |
| Msa0610960 | AT1G56300.1 | 57.500 | 120 | 49 | 1 | 9 | 128 | 10 | 127 | 2.20e-41 | 135 |
| Msa0610960 | AT1G56300.2 | 61.616 | 99 | 38 | 0 | 9 | 107 | 10 | 108 | 1.91e-38 | 127 |
| Msa0610960 | AT3G14200.1 | 43.089 | 123 | 66 | 3 | 9 | 128 | 9 | 130 | 9.37e-31 | 111 |
| Msa0610960 | AT1G72416.3 | 43.617 | 94 | 51 | 2 | 14 | 107 | 7 | 98 | 3.36e-22 | 88.2 |
| Msa0610960 | AT1G72416.1 | 43.617 | 94 | 51 | 2 | 14 | 107 | 7 | 98 | 5.04e-22 | 87.4 |
| Msa0610960 | AT1G72416.2 | 43.617 | 94 | 51 | 2 | 14 | 107 | 7 | 98 | 5.10e-22 | 87.4 |
| Msa0610960 | AT1G72416.4 | 43.617 | 94 | 51 | 2 | 14 | 107 | 7 | 98 | 5.16e-22 | 87.4 |
| Msa0610960 | AT5G25530.2 | 51.515 | 66 | 29 | 1 | 13 | 78 | 5 | 67 | 1.39e-17 | 78.2 |
| Msa0610960 | AT4G28480.2 | 47.143 | 70 | 34 | 1 | 9 | 78 | 1 | 67 | 3.37e-16 | 73.9 |
| Msa0610960 | AT3G08910.1 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 3.65e-16 | 74.3 |
| Msa0610960 | AT5G01390.3 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 3.98e-16 | 73.2 |
| Msa0610960 | AT1G59725.1 | 48.485 | 66 | 32 | 1 | 13 | 78 | 5 | 68 | 4.96e-16 | 73.9 |
| Msa0610960 | AT4G28480.1 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 5.66e-16 | 73.9 |
| Msa0610960 | AT5G01390.4 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 5.97e-16 | 72.4 |
| Msa0610960 | AT5G01390.2 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 7.31e-16 | 72.8 |
| Msa0610960 | AT1G10350.1 | 45.455 | 66 | 33 | 1 | 13 | 78 | 5 | 67 | 8.47e-16 | 73.2 |
| Msa0610960 | AT5G01390.1 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 1.17e-15 | 72.8 |
| Msa0610960 | AT1G74250.1 | 50.000 | 68 | 33 | 1 | 13 | 79 | 12 | 79 | 4.13e-15 | 72.0 |
| Msa0610960 | AT3G47940.1 | 47.143 | 70 | 35 | 1 | 9 | 78 | 1 | 68 | 4.20e-15 | 71.2 |
| Msa0610960 | AT5G25530.1 | 45.946 | 74 | 29 | 2 | 13 | 78 | 5 | 75 | 5.05e-15 | 71.2 |
| Msa0610960 | AT2G20560.1 | 48.485 | 66 | 31 | 1 | 13 | 78 | 5 | 67 | 7.21e-15 | 70.9 |
| Msa0610960 | AT5G16650.1 | 46.429 | 84 | 39 | 3 | 1 | 83 | 1 | 79 | 2.70e-14 | 65.9 |
| Msa0610960 | AT5G16650.2 | 46.429 | 84 | 39 | 3 | 1 | 83 | 1 | 79 | 4.28e-14 | 66.2 |
| Msa0610960 | AT5G03160.1 | 45.588 | 68 | 34 | 1 | 13 | 80 | 371 | 435 | 6.51e-14 | 68.2 |
| Msa0610960 | AT2G22360.1 | 43.617 | 94 | 44 | 3 | 13 | 102 | 87 | 175 | 9.66e-14 | 67.8 |
| Msa0610960 | AT4G13830.1 | 42.857 | 70 | 38 | 1 | 12 | 81 | 66 | 133 | 2.67e-13 | 63.9 |
| Msa0610960 | AT5G06910.1 | 33.129 | 163 | 83 | 7 | 7 | 147 | 23 | 181 | 5.84e-13 | 65.1 |
| Msa0610960 | AT4G13830.3 | 42.857 | 70 | 38 | 1 | 12 | 81 | 66 | 133 | 6.63e-13 | 63.5 |
| Msa0610960 | AT3G62600.1 | 46.377 | 69 | 33 | 1 | 10 | 78 | 24 | 88 | 1.01e-12 | 64.7 |
| Msa0610960 | AT4G13830.2 | 42.857 | 70 | 38 | 1 | 12 | 81 | 66 | 133 | 1.04e-12 | 63.2 |
| Msa0610960 | AT2G33735.1 | 45.455 | 66 | 32 | 1 | 13 | 78 | 23 | 84 | 1.18e-12 | 61.2 |
| Msa0610960 | AT2G33735.2 | 45.455 | 66 | 32 | 1 | 13 | 78 | 23 | 84 | 1.18e-12 | 61.2 |
| Msa0610960 | AT4G39150.3 | 50.000 | 68 | 30 | 1 | 11 | 78 | 5 | 68 | 1.74e-12 | 63.9 |
| Msa0610960 | AT4G39150.1 | 50.000 | 68 | 30 | 1 | 11 | 78 | 5 | 68 | 1.74e-12 | 63.9 |
| Msa0610960 | AT4G39150.2 | 50.000 | 68 | 30 | 1 | 11 | 78 | 5 | 68 | 1.74e-12 | 63.9 |
| Msa0610960 | AT2G41000.1 | 37.681 | 69 | 42 | 1 | 13 | 80 | 4 | 72 | 3.75e-12 | 61.6 |
| Msa0610960 | AT4G09350.1 | 47.887 | 71 | 32 | 2 | 12 | 81 | 106 | 172 | 4.29e-12 | 62.4 |
| Msa0610960 | AT1G80030.4 | 47.826 | 69 | 31 | 2 | 10 | 78 | 73 | 136 | 5.03e-12 | 62.8 |
| Msa0610960 | AT2G41000.2 | 37.681 | 69 | 42 | 1 | 13 | 80 | 4 | 72 | 6.05e-12 | 61.2 |
| Msa0610960 | AT1G80030.2 | 47.826 | 69 | 31 | 2 | 10 | 78 | 73 | 136 | 6.07e-12 | 62.8 |
| Msa0610960 | AT1G80030.3 | 47.826 | 69 | 31 | 2 | 10 | 78 | 73 | 136 | 6.07e-12 | 62.8 |
| Msa0610960 | AT1G80030.1 | 47.826 | 69 | 31 | 2 | 10 | 78 | 73 | 136 | 6.07e-12 | 62.8 |
| Msa0610960 | AT1G28210.3 | 38.554 | 83 | 47 | 1 | 12 | 94 | 48 | 126 | 6.17e-12 | 62.8 |
| Msa0610960 | AT1G28210.1 | 38.554 | 83 | 47 | 1 | 12 | 94 | 48 | 126 | 6.35e-12 | 62.4 |
| Msa0610960 | AT2G35720.1 | 43.056 | 72 | 40 | 1 | 7 | 78 | 10 | 80 | 6.48e-12 | 62.8 |
| Msa0610960 | AT1G28210.2 | 38.554 | 83 | 47 | 1 | 12 | 94 | 48 | 126 | 7.84e-12 | 62.4 |
| Msa0610960 | AT1G68370.1 | 44.615 | 65 | 32 | 1 | 14 | 78 | 19 | 79 | 8.02e-12 | 62.4 |
| Msa0610960 | AT1G24120.1 | 36.709 | 79 | 46 | 1 | 14 | 92 | 22 | 96 | 1.18e-11 | 62.0 |
| Msa0610960 | AT3G12170.1 | 32.026 | 153 | 77 | 6 | 12 | 146 | 11 | 154 | 1.28e-11 | 61.2 |
| Msa0610960 | AT3G12170.2 | 31.081 | 148 | 85 | 5 | 12 | 146 | 47 | 190 | 2.96e-11 | 60.5 |
| Msa0610960 | AT4G39960.1 | 45.455 | 66 | 31 | 1 | 13 | 78 | 86 | 146 | 3.18e-11 | 60.5 |
| Msa0610960 | AT4G39960.2 | 45.455 | 66 | 31 | 1 | 13 | 78 | 86 | 146 | 3.18e-11 | 60.5 |
| Msa0610960 | AT5G48030.1 | 45.455 | 66 | 32 | 1 | 13 | 78 | 95 | 156 | 3.29e-11 | 60.5 |
| Msa0610960 | AT4G10130.2 | 42.105 | 76 | 43 | 1 | 6 | 81 | 5 | 79 | 4.51e-11 | 58.5 |
| Msa0610960 | AT4G10130.4 | 42.105 | 76 | 43 | 1 | 6 | 81 | 5 | 79 | 4.51e-11 | 58.5 |
| Msa0610960 | AT4G10130.1 | 42.105 | 76 | 43 | 1 | 6 | 81 | 5 | 79 | 4.51e-11 | 58.5 |
| Msa0610960 | AT4G10130.3 | 42.105 | 76 | 43 | 1 | 6 | 81 | 5 | 79 | 4.51e-11 | 58.5 |
| Msa0610960 | AT4G10130.5 | 42.105 | 76 | 43 | 1 | 6 | 81 | 5 | 79 | 4.51e-11 | 58.5 |
| Msa0610960 | AT1G59980.2 | 37.975 | 79 | 45 | 1 | 14 | 92 | 25 | 99 | 4.62e-11 | 60.1 |
| Msa0610960 | AT1G59980.1 | 37.975 | 79 | 45 | 1 | 14 | 92 | 25 | 99 | 5.97e-11 | 59.7 |
| Msa0610960 | AT2G21510.3 | 45.588 | 68 | 33 | 1 | 11 | 78 | 5 | 68 | 6.61e-11 | 59.7 |
| Msa0610960 | AT2G21510.1 | 45.588 | 68 | 33 | 1 | 11 | 78 | 5 | 68 | 6.61e-11 | 59.7 |
| Msa0610960 | AT2G21510.5 | 45.588 | 68 | 33 | 1 | 11 | 78 | 5 | 68 | 7.96e-11 | 59.3 |
| Msa0610960 | AT2G21510.2 | 45.588 | 68 | 33 | 1 | 11 | 78 | 5 | 68 | 8.21e-11 | 59.3 |
| Msa0610960 | AT2G21510.4 | 45.588 | 68 | 33 | 1 | 11 | 78 | 5 | 68 | 8.21e-11 | 59.3 |
Find 46 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGCTAAAGTCGGTTAATT+AGG | 0.232680 | 4_2:+58938224 | None:intergenic |
| TTATTGCAGGAGAAGGTTTA+TGG | 0.240463 | 4_2:-58935586 | Msa0610960:intron |
| CAAGGGAAATAATAAATTTA+TGG | 0.275299 | 4_2:+58938180 | None:intergenic |
| GGAGAAGGTTTATGGTTTAG+AGG | 0.283100 | 4_2:-58935578 | Msa0610960:CDS |
| ACCAAACTCAACAACTAAAA+AGG | 0.283729 | 4_2:+58938055 | None:intergenic |
| AACATTCAAGAAGCTTATTC+AGG | 0.294312 | 4_2:-58937714 | Msa0610960:intron |
| TCATCTTACTACAGTATTCT+TGG | 0.298603 | 4_2:-58937963 | Msa0610960:CDS |
| TAATAAATTTATGGAAGTTA+TGG | 0.313874 | 4_2:+58938189 | None:intergenic |
| ATGAGATAAGGCGTGCTTAT+AGG | 0.318628 | 4_2:-58937917 | Msa0610960:CDS |
| GGTGTTCTTGTCCACCTATC+TGG | 0.379195 | 4_2:+58937771 | None:intergenic |
| TTATGGTTTAGAGGAGTTGC+AGG | 0.401445 | 4_2:-58935569 | Msa0610960:CDS |
| CTCGCCTAACTTCAGCCATA+AGG | 0.416208 | 4_2:+58937383 | None:intergenic |
| CTGTAGTAAGATGACGATAA+TGG | 0.435521 | 4_2:+58937972 | None:intergenic |
| AAGGATTCATCAACCATAGA+TGG | 0.439113 | 4_2:+58935490 | None:intergenic |
| GGACGAAATGGTGTCCCTTA+TGG | 0.441713 | 4_2:-58937398 | Msa0610960:CDS |
| GGAGTTGCAGGACATGTTCA+TGG | 0.460111 | 4_2:-58935557 | Msa0610960:CDS |
| AGAGTCCTTCAATGTATTGT+GGG | 0.465130 | 4_2:-58935516 | Msa0610960:CDS |
| ATTCTTCATTAGATGAGATA+AGG | 0.473305 | 4_2:-58937929 | Msa0610960:CDS |
| TCGCCTAACTTCAGCCATAA+GGG | 0.480132 | 4_2:+58937384 | None:intergenic |
| ACCTCATCTTCTTCCTCTTG+AGG | 0.492857 | 4_2:+58937544 | None:intergenic |
| TGCTTATAGGAAGCTTGCTA+TGG | 0.497498 | 4_2:-58937904 | Msa0610960:intron |
| GAGAGTCCTTCAATGTATTG+TGG | 0.499022 | 4_2:-58935517 | Msa0610960:CDS |
| TGTCCCTTATGGCTGAAGTT+AGG | 0.499106 | 4_2:-58937387 | Msa0610960:CDS |
| CTAAAGTCGGTTAATTAGGA+AGG | 0.501953 | 4_2:+58938228 | None:intergenic |
| AAAAGAACTATGTACGATGC+TGG | 0.511823 | 4_2:-58937577 | Msa0610960:CDS |
| GTATTGTGGGACACCATCTA+TGG | 0.513118 | 4_2:-58935503 | Msa0610960:CDS |
| TGCATAATTGACAAGGAACA+AGG | 0.523055 | 4_2:+58938162 | None:intergenic |
| AATGTTCTGAAATTTACGCT+TGG | 0.532819 | 4_2:+58937731 | None:intergenic |
| TGCAGCAATGGCATCCAGAT+AGG | 0.538770 | 4_2:-58937785 | Msa0610960:intron |
| ACAATGGATGATTATAGTGA+AGG | 0.543818 | 4_2:-58937996 | Msa0610960:CDS |
| AACACTTCCTCTCTTAGCAA+AGG | 0.546362 | 4_2:+58935471 | None:intergenic |
| CAATGGATGATTATAGTGAA+GGG | 0.570763 | 4_2:-58937995 | Msa0610960:CDS |
| ATATTTATTGAAGCTAAAGT+CGG | 0.576457 | 4_2:+58938215 | None:intergenic |
| TTGGCTTCACTCAATAAAGA+AGG | 0.580558 | 4_2:+58937750 | None:intergenic |
| GGTGTCCCACAATACATTGA+AGG | 0.581503 | 4_2:+58935511 | None:intergenic |
| GCAGGACATGTTCATGGAGA+TGG | 0.589641 | 4_2:-58935551 | Msa0610960:CDS |
| ATGTTCATGGAGATGGCTGA+AGG | 0.590061 | 4_2:-58935544 | Msa0610960:CDS |
| TCCTCAAGAGGAAGAAGATG+AGG | 0.607948 | 4_2:-58937545 | Msa0610960:intron |
| GATGAATCCTTTGCTAAGAG+AGG | 0.608489 | 4_2:-58935478 | Msa0610960:CDS |
| TAAAGTCGGTTAATTAGGAA+GGG | 0.610354 | 4_2:+58938229 | None:intergenic |
| ATGGTTTAAACGAGTTACAA+TGG | 0.625435 | 4_2:-58938012 | Msa0610960:exon |
| TGGCTTGTATGATCCTCAAG+AGG | 0.660837 | 4_2:-58937557 | Msa0610960:CDS |
| GCATAATTGACAAGGAACAA+GGG | 0.669700 | 4_2:+58938163 | None:intergenic |
| TATGGCTGAAGTTAGGCGAG+AGG | 0.677695 | 4_2:-58937380 | Msa0610960:intron |
| AGCAATGGCATCCAGATAGG+TGG | 0.677774 | 4_2:-58937782 | Msa0610960:CDS |
| GATTGCATGCATAATTGACA+AGG | 0.693732 | 4_2:+58938155 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAATTTATGGAAGTTA+TGG | + | chr4_2:58935513-58935532 | None:intergenic | 15.0% |
| !!! | TTTTGTTTATTAGTTTGTTA+TGG | - | chr4_2:58936230-58936249 | Msa0610960:intron | 15.0% |
| !!! | TGATAGATATTTTTTATTGA+AGG | - | chr4_2:58937896-58937915 | Msa0610960:intron | 15.0% |
| !!! | GATAGATATTTTTTATTGAA+GGG | - | chr4_2:58937897-58937916 | Msa0610960:intron | 15.0% |
| !! | CAATAAGATATATACATATA+TGG | + | chr4_2:58938099-58938118 | None:intergenic | 15.0% |
| !! | ATATTTATTGAAGCTAAAGT+CGG | + | chr4_2:58935487-58935506 | None:intergenic | 20.0% |
| !! | CAAGGGAAATAATAAATTTA+TGG | + | chr4_2:58935522-58935541 | None:intergenic | 20.0% |
| !!! | TGTGAATTTTTGTATCATTT+TGG | - | chr4_2:58936028-58936047 | Msa0610960:intron | 20.0% |
| !!! | AATTTTTGTATCATTTTGGT+GGG | - | chr4_2:58936032-58936051 | Msa0610960:intron | 20.0% |
| !!! | ACATGTTTGTTTCTAATTTT+AGG | - | chr4_2:58936262-58936281 | Msa0610960:intron | 20.0% |
| !! | AAGTGTTCATTTAAATTGTA+CGG | - | chr4_2:58936602-58936621 | Msa0610960:intron | 20.0% |
| !! | TCAAGTATATTATTCTTCAA+GGG | - | chr4_2:58936972-58936991 | Msa0610960:intron | 20.0% |
| !! | ACTAGAAAAATTACAGATTA+AGG | - | chr4_2:58937082-58937101 | Msa0610960:intron | 20.0% |
| !! | TCAAGTATATTATTCTTCAA+GGG | - | chr4_2:58936972-58936991 | Msa0610960:intron | 20.0% |
| !! | CATTTATCTTGTAAATGTAA+AGG | + | chr4_2:58937816-58937835 | None:intergenic | 20.0% |
| !! | CTTTACATTTACAAGATAAA+TGG | - | chr4_2:58937814-58937833 | Msa0610960:intron | 20.0% |
| !! | AAAAAAAAAAAAAAAGACCC+AGG | - | chr4_2:58937970-58937989 | Msa0610960:CDS | 20.0% |
| !!! | GTCTTGAATTTTTAACATAA+AGG | - | chr4_2:58938027-58938046 | Msa0610960:five_prime_UTR | 20.0% |
| !! | ATATGTATATATCTTATTGC+AGG | - | chr4_2:58938100-58938119 | Msa0610960:five_prime_UTR | 20.0% |
| !! | AAATGAGACAAGTATGTTTT+TGG | + | chr4_2:58935603-58935622 | None:intergenic | 25.0% |
| !!! | CATATTTTATTTCTAGTGCA+TGG | - | chr4_2:58935668-58935687 | Msa0610960:intron | 25.0% |
| ! | ATTCTTCATTAGATGAGATA+AGG | - | chr4_2:58935770-58935789 | Msa0610960:intron | 25.0% |
| ! | CAATGCAAATGACAAAAAAA+GGG | + | chr4_2:58935837-58935856 | None:intergenic | 25.0% |
| ! | ACAATGCAAATGACAAAAAA+AGG | + | chr4_2:58935838-58935857 | None:intergenic | 25.0% |
| !! | GAATTTTTGTATCATTTTGG+TGG | - | chr4_2:58936031-58936050 | Msa0610960:intron | 25.0% |
| !!! | GTTTTCTGTTTTGTTTTGTT+TGG | - | chr4_2:58936077-58936096 | Msa0610960:intron | 25.0% |
| ! | ACAATCTTCAAGAAAAACTA+AGG | + | chr4_2:58936205-58936224 | None:intergenic | 25.0% |
| !! | TTAGGATTTTTCTGATTTTG+TGG | - | chr4_2:58936280-58936299 | Msa0610960:intron | 25.0% |
| !! | CAAGATCAAACTTTTCTAAT+AGG | + | chr4_2:58936366-58936385 | None:intergenic | 25.0% |
| ! | CTATTAGAAAAGTTTGATCT+TGG | - | chr4_2:58936364-58936383 | Msa0610960:intron | 25.0% |
| ! | TGAAATCTCATTAACAATTG+AGG | + | chr4_2:58936411-58936430 | None:intergenic | 25.0% |
| !! | AATTCAAAATTTTGCACCTT+AGG | + | chr4_2:58936443-58936462 | None:intergenic | 25.0% |
| !!! | TCTCTTTTTAGATTTGGTTT+GGG | + | chr4_2:58936485-58936504 | None:intergenic | 25.0% |
| !! | ATTCACTCTCTTTTTAGATT+TGG | + | chr4_2:58936491-58936510 | None:intergenic | 25.0% |
| ! | AAAGATAGAGATAAAACACA+TGG | - | chr4_2:58936532-58936551 | Msa0610960:intron | 25.0% |
| ! | AATGAATGTTGAAAATTTGC+AGG | - | chr4_2:58936568-58936587 | Msa0610960:intron | 25.0% |
| !! | GAAAAGATTAGTAACAGTTT+TGG | - | chr4_2:58936648-58936667 | Msa0610960:intron | 25.0% |
| ! | CTCAAGTATATTATTCTTCA+AGG | - | chr4_2:58936971-58936990 | Msa0610960:intron | 25.0% |
| ! | TATATTATTCTTCAAGGGTT+TGG | - | chr4_2:58936977-58936996 | Msa0610960:intron | 25.0% |
| ! | TTCTAGTAGATTTCAGATTA+GGG | + | chr4_2:58937069-58937088 | None:intergenic | 25.0% |
| !! | TTTCTAGTAGATTTCAGATT+AGG | + | chr4_2:58937070-58937089 | None:intergenic | 25.0% |
| ! | CTCAAGTATATTATTCTTCA+AGG | - | chr4_2:58936971-58936990 | Msa0610960:intron | 25.0% |
| ! | TATATTATTCTTCAAGGGTT+TGG | - | chr4_2:58936977-58936996 | Msa0610960:intron | 25.0% |
| ! | CTAACTCAATCTTACAAAAA+CGG | - | chr4_2:58937705-58937724 | Msa0610960:intron | 25.0% |
| TAAAGTCGGTTAATTAGGAA+GGG | + | chr4_2:58935473-58935492 | None:intergenic | 30.0% | |
| CAACAACTAAAAAGGAATCA+AGG | + | chr4_2:58935639-58935658 | None:intergenic | 30.0% | |
| !!! | TCCTTTTTAGTTGTTGAGTT+TGG | - | chr4_2:58935643-58935662 | Msa0610960:intron | 30.0% |
| ACCAAACTCAACAACTAAAA+AGG | + | chr4_2:58935647-58935666 | None:intergenic | 30.0% | |
| ATGGTTTAAACGAGTTACAA+TGG | - | chr4_2:58935687-58935706 | Msa0610960:intron | 30.0% | |
| ACAATGGATGATTATAGTGA+AGG | - | chr4_2:58935703-58935722 | Msa0610960:intron | 30.0% | |
| CAATGGATGATTATAGTGAA+GGG | - | chr4_2:58935704-58935723 | Msa0610960:intron | 30.0% | |
| TCATCTTACTACAGTATTCT+TGG | - | chr4_2:58935736-58935755 | Msa0610960:intron | 30.0% | |
| !! | TGAATTTTGATCTGAATGTG+AGG | - | chr4_2:58935868-58935887 | Msa0610960:intron | 30.0% |
| !! | AATGTTCTGAAATTTACGCT+TGG | + | chr4_2:58935971-58935990 | None:intergenic | 30.0% |
| AACATTCAAGAAGCTTATTC+AGG | - | chr4_2:58935985-58936004 | Msa0610960:intron | 30.0% | |
| ! | TCGTACATAGTTCTTTTCTT+GGG | + | chr4_2:58936119-58936138 | None:intergenic | 30.0% |
| ! | ATCGTACATAGTTCTTTTCT+TGG | + | chr4_2:58936120-58936139 | None:intergenic | 30.0% |
| ! | CAAACTTTTCTAATAGGAAG+TGG | + | chr4_2:58936360-58936379 | None:intergenic | 30.0% |
| !! | CTCTCTTTTTAGATTTGGTT+TGG | + | chr4_2:58936486-58936505 | None:intergenic | 30.0% |
| GTTCATTTAAATTGTACGGA+AGG | - | chr4_2:58936606-58936625 | Msa0610960:intron | 30.0% | |
| ATGAATGAGTAATGAGTACA+TGG | - | chr4_2:58936676-58936695 | Msa0610960:intron | 30.0% | |
| AAGGTTAATCTTAGAAATCG+TGG | - | chr4_2:58936701-58936720 | Msa0610960:intron | 30.0% | |
| TTAATCTTAGAAATCGTGGT+TGG | - | chr4_2:58936705-58936724 | Msa0610960:intron | 30.0% | |
| !!! | TAAGCTAGTTTTGTTGAGTT+GGG | + | chr4_2:58936737-58936756 | None:intergenic | 30.0% |
| !!! | ATAAGCTAGTTTTGTTGAGT+TGG | + | chr4_2:58936738-58936757 | None:intergenic | 30.0% |
| ! | AACTCAACAGATTTCTAAGA+TGG | + | chr4_2:58936943-58936962 | None:intergenic | 30.0% |
| TAGTATGCAAGTTGTGTATA+AGG | + | chr4_2:58937013-58937032 | None:intergenic | 30.0% | |
| TCTAGTAGATTTCAGATTAG+GGG | + | chr4_2:58937068-58937087 | None:intergenic | 30.0% | |
| AAAATCACATATTCCAAGCT+TGG | - | chr4_2:58937165-58937184 | Msa0610960:intron | 30.0% | |
| TAGTATGCAAGTTGTGTATA+AGG | + | chr4_2:58937013-58937032 | None:intergenic | 30.0% | |
| ! | CGTTTTTGTAAGATTGAGTT+AGG | + | chr4_2:58937707-58937726 | None:intergenic | 30.0% |
| TTAAAAGTCTCACATCAGAT+AGG | + | chr4_2:58937780-58937799 | None:intergenic | 30.0% | |
| ATATATCTTATTGCAGGAGA+AGG | - | chr4_2:58938106-58938125 | Msa0610960:five_prime_UTR | 30.0% | |
| CTAAAGTCGGTTAATTAGGA+AGG | + | chr4_2:58935474-58935493 | None:intergenic | 35.0% | |
| GAAGCTAAAGTCGGTTAATT+AGG | + | chr4_2:58935478-58935497 | None:intergenic | 35.0% | |
| GCATAATTGACAAGGAACAA+GGG | + | chr4_2:58935539-58935558 | None:intergenic | 35.0% | |
| TGCATAATTGACAAGGAACA+AGG | + | chr4_2:58935540-58935559 | None:intergenic | 35.0% | |
| GATTGCATGCATAATTGACA+AGG | + | chr4_2:58935547-58935566 | None:intergenic | 35.0% | |
| CTGTAGTAAGATGACGATAA+TGG | + | chr4_2:58935730-58935749 | None:intergenic | 35.0% | |
| AATTTCAATGCATGCAGCAA+TGG | - | chr4_2:58935902-58935921 | Msa0610960:intron | 35.0% | |
| TTGGCTTCACTCAATAAAGA+AGG | + | chr4_2:58935952-58935971 | None:intergenic | 35.0% | |
| AAAAGAACTATGTACGATGC+TGG | - | chr4_2:58936122-58936141 | Msa0610960:intron | 35.0% | |
| ! | TTCTGATTTTGTGGACGAAA+TGG | - | chr4_2:58936289-58936308 | Msa0610960:intron | 35.0% |
| GATTTCATGACTATGTCCTA+AGG | - | chr4_2:58936424-58936443 | Msa0610960:intron | 35.0% | |
| GAAGGTAACAACTCAGTAAA+GGG | - | chr4_2:58936624-58936643 | Msa0610960:intron | 35.0% | |
| GAGTAATGAGTACATGGTTA+AGG | - | chr4_2:58936682-58936701 | Msa0610960:intron | 35.0% | |
| ! | CTCAACAAAACTAGCTTATG+AGG | - | chr4_2:58936739-58936758 | Msa0610960:intron | 35.0% |
| ! | AACAAAACTAGCTTATGAGG+TGG | - | chr4_2:58936742-58936761 | Msa0610960:intron | 35.0% |
| ! | ACAAAACTAGCTTATGAGGT+GGG | - | chr4_2:58936743-58936762 | Msa0610960:intron | 35.0% |
| AGCGAAAACTTAATAGCTGA+TGG | - | chr4_2:58936888-58936907 | Msa0610960:intron | 35.0% | |
| CTTAATAGCTGATGGTCTAA+CGG | - | chr4_2:58936896-58936915 | Msa0610960:intron | 35.0% | |
| ! | TATTGAAGGGTATGCATACA+AGG | + | chr4_2:58937041-58937060 | None:intergenic | 35.0% |
| TGTCAGGTTTCACTTCTTAA+GGG | + | chr4_2:58937299-58937318 | None:intergenic | 35.0% | |
| ATGTCAGGTTTCACTTCTTA+AGG | + | chr4_2:58937300-58937319 | None:intergenic | 35.0% | |
| GTAGTAGATAGGGTAACAAT+AGG | - | chr4_2:58937493-58937512 | Msa0610960:intron | 35.0% | |
| ! | GTATTTTGCAACTCAACAAG+TGG | + | chr4_2:58937584-58937603 | None:intergenic | 35.0% |
| !! | TTTTGAAGGGTATGCATACA+AGG | + | chr4_2:58937673-58937692 | None:intergenic | 35.0% |
| AAACTGTGCTGCAAGTTTAA+AGG | + | chr4_2:58937861-58937880 | None:intergenic | 35.0% | |
| TTATTGCAGGAGAAGGTTTA+TGG | - | chr4_2:58938113-58938132 | Msa0610960:five_prime_UTR | 35.0% | |
| AGAGTCCTTCAATGTATTGT+GGG | - | chr4_2:58938183-58938202 | Msa0610960:five_prime_UTR | 35.0% | |
| AAGGATTCATCAACCATAGA+TGG | + | chr4_2:58938212-58938231 | None:intergenic | 35.0% | |
| ATGAGATAAGGCGTGCTTAT+AGG | - | chr4_2:58935782-58935801 | Msa0610960:intron | 40.0% | |
| !! | TGCTTATAGGAAGCTTGCTA+TGG | - | chr4_2:58935795-58935814 | Msa0610960:intron | 40.0% |
| GGAAGGTAACAACTCAGTAA+AGG | - | chr4_2:58936623-58936642 | Msa0610960:intron | 40.0% | |
| ! | CAAAACTAGCTTATGAGGTG+GGG | - | chr4_2:58936744-58936763 | Msa0610960:intron | 40.0% |
| TAAAGAGTCCCACATCGAAT+AGG | + | chr4_2:58936806-58936825 | None:intergenic | 40.0% | |
| ATATGGGGCATGGACATAAA+TGG | - | chr4_2:58936852-58936871 | Msa0610960:intron | 40.0% | |
| ! | GATTAGGGGAGTGTATTGAA+GGG | + | chr4_2:58937054-58937073 | None:intergenic | 40.0% |
| ! | AGATTAGGGGAGTGTATTGA+AGG | + | chr4_2:58937055-58937074 | None:intergenic | 40.0% |
| CAGAAGCTTTCTAACTTCAG+AGG | - | chr4_2:58937199-58937218 | Msa0610960:intron | 40.0% | |
| CTTCTTAAGGGATCTCACAA+AGG | + | chr4_2:58937287-58937306 | None:intergenic | 40.0% | |
| AAAATCCTGTCATGCATGGA+AGG | + | chr4_2:58937336-58937355 | None:intergenic | 40.0% | |
| ! | TCCATGCATGACAGGATTTT+TGG | - | chr4_2:58937336-58937355 | Msa0610960:intron | 40.0% |
| TCCAAAAATCCTGTCATGCA+TGG | + | chr4_2:58937340-58937359 | None:intergenic | 40.0% | |
| !! | AGGATTTTTGGAGAGCTTGA+TGG | - | chr4_2:58937348-58937367 | Msa0610960:intron | 40.0% |
| TCATCATCTCAATCAGACAC+AGG | + | chr4_2:58937410-58937429 | None:intergenic | 40.0% | |
| ACTCAGCTTCTGTAGTAGAT+AGG | - | chr4_2:58937482-58937501 | Msa0610960:intron | 40.0% | |
| CTCAGCTTCTGTAGTAGATA+GGG | - | chr4_2:58937483-58937502 | Msa0610960:intron | 40.0% | |
| TCAGTTTCTTCCTTCAGTAC+AGG | - | chr4_2:58937547-58937566 | Msa0610960:CDS | 40.0% | |
| ATGCATACCCTTCAAAATCG+TGG | - | chr4_2:58937676-58937695 | Msa0610960:intron | 40.0% | |
| ATACCCTTCAAAATCGTGGT+TGG | - | chr4_2:58937680-58937699 | Msa0610960:intron | 40.0% | |
| TACCCTTCAAAATCGTGGTT+GGG | - | chr4_2:58937681-58937700 | Msa0610960:intron | 40.0% | |
| ACAGACATTCTTAGGGGTTT+AGG | - | chr4_2:58937995-58938014 | Msa0610960:CDS | 40.0% | |
| GGAGAAGGTTTATGGTTTAG+AGG | - | chr4_2:58938121-58938140 | Msa0610960:five_prime_UTR | 40.0% | |
| TTATGGTTTAGAGGAGTTGC+AGG | - | chr4_2:58938130-58938149 | Msa0610960:five_prime_UTR | 40.0% | |
| GAGAGTCCTTCAATGTATTG+TGG | - | chr4_2:58938182-58938201 | Msa0610960:five_prime_UTR | 40.0% | |
| GATGAATCCTTTGCTAAGAG+AGG | - | chr4_2:58938221-58938240 | Msa0610960:five_prime_UTR | 40.0% | |
| AACACTTCCTCTCTTAGCAA+AGG | + | chr4_2:58938231-58938250 | None:intergenic | 40.0% | |
| ! | TGGCTTGTATGATCCTCAAG+AGG | - | chr4_2:58936142-58936161 | Msa0610960:intron | 45.0% |
| TCCTCAAGAGGAAGAAGATG+AGG | - | chr4_2:58936154-58936173 | Msa0610960:intron | 45.0% | |
| ACCTCATCTTCTTCCTCTTG+AGG | + | chr4_2:58936158-58936177 | None:intergenic | 45.0% | |
| TGTCCCTTATGGCTGAAGTT+AGG | - | chr4_2:58936312-58936331 | Msa0610960:intron | 45.0% | |
| TCGCCTAACTTCAGCCATAA+GGG | + | chr4_2:58936318-58936337 | None:intergenic | 45.0% | |
| AGACCATCTCCTATTCGATG+TGG | - | chr4_2:58936794-58936813 | Msa0610960:intron | 45.0% | |
| GACCATCTCCTATTCGATGT+GGG | - | chr4_2:58936795-58936814 | Msa0610960:intron | 45.0% | |
| !! | ATGTCTAGTCTTGGACGCAA+GGG | + | chr4_2:58936834-58936853 | None:intergenic | 45.0% |
| !! | TATGTCTAGTCTTGGACGCA+AGG | + | chr4_2:58936835-58936854 | None:intergenic | 45.0% |
| TGCGTCCAAGACTAGACATA+TGG | - | chr4_2:58936835-58936854 | Msa0610960:intron | 45.0% | |
| GCGTCCAAGACTAGACATAT+GGG | - | chr4_2:58936836-58936855 | Msa0610960:intron | 45.0% | |
| CGTCCAAGACTAGACATATG+GGG | - | chr4_2:58936837-58936856 | Msa0610960:intron | 45.0% | |
| ATGCCCCATATGTCTAGTCT+TGG | + | chr4_2:58936843-58936862 | None:intergenic | 45.0% | |
| AAGACTAGACATATGGGGCA+TGG | - | chr4_2:58936842-58936861 | Msa0610960:intron | 45.0% | |
| ! | GATGGTCTAACGGATCTTAG+AGG | - | chr4_2:58936906-58936925 | Msa0610960:intron | 45.0% |
| GCTTTCTAACTTCAGAGGCT+TGG | - | chr4_2:58937204-58937223 | Msa0610960:intron | 45.0% | |
| GGATCTCACAAAGGATGAAG+TGG | + | chr4_2:58937278-58937297 | None:intergenic | 45.0% | |
| GGTGCAAGCATATTGATGTC+AGG | + | chr4_2:58937315-58937334 | None:intergenic | 45.0% | |
| GTCAAGCTATATGGCTGAGA+AGG | + | chr4_2:58937438-58937457 | None:intergenic | 45.0% | |
| TCTCAGCCATATAGCTTGAC+AGG | - | chr4_2:58937438-58937457 | Msa0610960:intron | 45.0% | |
| CATGTGCCTGTCAAGCTATA+TGG | + | chr4_2:58937447-58937466 | None:intergenic | 45.0% | |
| TGTGCTCTGATTGCATGATG+GGG | + | chr4_2:58937525-58937544 | None:intergenic | 45.0% | |
| GTGTGCTCTGATTGCATGAT+GGG | + | chr4_2:58937526-58937545 | None:intergenic | 45.0% | |
| TGTGTGCTCTGATTGCATGA+TGG | + | chr4_2:58937527-58937546 | None:intergenic | 45.0% | |
| GAGAGATTTGCCTGTACTGA+AGG | + | chr4_2:58937560-58937579 | None:intergenic | 45.0% | |
| CAAAAACGGTTTGTGAGACG+AGG | - | chr4_2:58937719-58937738 | Msa0610960:CDS | 45.0% | |
| CCTAAGAATGTCTGTGACCT+GGG | + | chr4_2:58937990-58938009 | None:intergenic | 45.0% | |
| CCAGGTCACAGACATTCTTA+GGG | - | chr4_2:58937988-58938007 | Msa0610960:CDS | 45.0% | |
| CAGGTCACAGACATTCTTAG+GGG | - | chr4_2:58937989-58938008 | Msa0610960:CDS | 45.0% | |
| ATGTTCATGGAGATGGCTGA+AGG | - | chr4_2:58938155-58938174 | Msa0610960:five_prime_UTR | 45.0% | |
| GGTGTCCCACAATACATTGA+AGG | + | chr4_2:58938191-58938210 | None:intergenic | 45.0% | |
| GTATTGTGGGACACCATCTA+TGG | - | chr4_2:58938196-58938215 | Msa0610960:five_prime_UTR | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTTTG+TGG | + | chr4_2:58937962-58937981 | None:intergenic | 5.0% |
| TGCAGCAATGGCATCCAGAT+AGG | - | chr4_2:58935914-58935933 | Msa0610960:intron | 50.0% | |
| AGCAATGGCATCCAGATAGG+TGG | - | chr4_2:58935917-58935936 | Msa0610960:intron | 50.0% | |
| GGTGTTCTTGTCCACCTATC+TGG | + | chr4_2:58935931-58935950 | None:intergenic | 50.0% | |
| GGACGAAATGGTGTCCCTTA+TGG | - | chr4_2:58936301-58936320 | Msa0610960:intron | 50.0% | |
| CTCGCCTAACTTCAGCCATA+AGG | + | chr4_2:58936319-58936338 | None:intergenic | 50.0% | |
| TATGGCTGAAGTTAGGCGAG+AGG | - | chr4_2:58936319-58936338 | Msa0610960:intron | 50.0% | |
| GTCCCACATCGAATAGGAGA+TGG | + | chr4_2:58936800-58936819 | None:intergenic | 50.0% | |
| !! | TGTCTAGTCTTGGACGCAAG+GGG | + | chr4_2:58936833-58936852 | None:intergenic | 50.0% |
| TGGGGCATGGACATAAATGG+TGG | - | chr4_2:58936855-58936874 | Msa0610960:intron | 50.0% | |
| GGGGCATGGACATAAATGGT+GGG | - | chr4_2:58936856-58936875 | Msa0610960:intron | 50.0% | |
| ! | GCATGGACATAAATGGTGGG+TGG | - | chr4_2:58936859-58936878 | Msa0610960:intron | 50.0% |
| TGCAGATTGAGAGCCAAGCT+TGG | + | chr4_2:58937181-58937200 | None:intergenic | 50.0% | |
| TTGCACCTTCCATGCATGAC+AGG | - | chr4_2:58937328-58937347 | Msa0610960:intron | 50.0% | |
| AGCTTGACAGGCACATGATG+AGG | - | chr4_2:58937450-58937469 | Msa0610960:intron | 50.0% | |
| ! | GGCCCAACCACGATTTTGAA+GGG | + | chr4_2:58937686-58937705 | None:intergenic | 50.0% |
| ! | AGGCCCAACCACGATTTTGA+AGG | + | chr4_2:58937687-58937706 | None:intergenic | 50.0% |
| CCCAGGTCACAGACATTCTT+AGG | - | chr4_2:58937987-58938006 | Msa0610960:CDS | 50.0% | |
| CCCTAAGAATGTCTGTGACC+TGG | + | chr4_2:58937991-58938010 | None:intergenic | 50.0% | |
| GGAGTTGCAGGACATGTTCA+TGG | - | chr4_2:58938142-58938161 | Msa0610960:five_prime_UTR | 50.0% | |
| GCAGGACATGTTCATGGAGA+TGG | - | chr4_2:58938148-58938167 | Msa0610960:five_prime_UTR | 50.0% | |
| !! | GTCTAGTCTTGGACGCAAGG+GGG | + | chr4_2:58936832-58936851 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 58935462 | 58938259 | 58935462 | ID=Msa0610960;Name=Msa0610960 |
| chr4_2 | mRNA | 58935462 | 58938259 | 58935462 | ID=Msa0610960-mRNA-1;Parent=Msa0610960;Name=Msa0610960-mRNA-1;_AED=0.15;_eAED=0.15;_QI=244|1|0.8|1|1|1|5|0|154 |
| chr4_2 | exon | 58935462 | 58935599 | 58935462 | ID=Msa0610960-mRNA-1:exon:15605;Parent=Msa0610960-mRNA-1 |
| chr4_2 | exon | 58937381 | 58937437 | 58937381 | ID=Msa0610960-mRNA-1:exon:15604;Parent=Msa0610960-mRNA-1 |
| chr4_2 | exon | 58937546 | 58937616 | 58937546 | ID=Msa0610960-mRNA-1:exon:15603;Parent=Msa0610960-mRNA-1 |
| chr4_2 | exon | 58937715 | 58937802 | 58937715 | ID=Msa0610960-mRNA-1:exon:15602;Parent=Msa0610960-mRNA-1 |
| chr4_2 | exon | 58937905 | 58938259 | 58937905 | ID=Msa0610960-mRNA-1:exon:15601;Parent=Msa0610960-mRNA-1 |
| chr4_2 | five_prime_UTR | 58938016 | 58938259 | 58938016 | ID=Msa0610960-mRNA-1:five_prime_utr;Parent=Msa0610960-mRNA-1 |
| chr4_2 | CDS | 58937905 | 58938015 | 58937905 | ID=Msa0610960-mRNA-1:cds;Parent=Msa0610960-mRNA-1 |
| chr4_2 | CDS | 58937715 | 58937802 | 58937715 | ID=Msa0610960-mRNA-1:cds;Parent=Msa0610960-mRNA-1 |
| chr4_2 | CDS | 58937546 | 58937616 | 58937546 | ID=Msa0610960-mRNA-1:cds;Parent=Msa0610960-mRNA-1 |
| chr4_2 | CDS | 58937381 | 58937437 | 58937381 | ID=Msa0610960-mRNA-1:cds;Parent=Msa0610960-mRNA-1 |
| chr4_2 | CDS | 58935462 | 58935599 | 58935462 | ID=Msa0610960-mRNA-1:cds;Parent=Msa0610960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
