Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0578730 | XP_013456857.3 | 93.548 | 155 | 10 | 0 | 1 | 155 | 1 | 155 | 3.44e-93 | 277 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0578730 | sp|Q5SLW9|DNAJ1_THET8 | 43.478 | 115 | 56 | 2 | 13 | 122 | 4 | 114 | 4.58e-19 | 85.1 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0578730 | A0A072UPG5 | 93.548 | 155 | 10 | 0 | 1 | 155 | 1 | 155 | 1.64e-93 | 277 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0014410 | Msa0578730 | 0.801126 | 1.043255e-48 | -8.615850e-47 |
Msa0154270 | Msa0578730 | 0.820972 | 5.170174e-53 | -8.615850e-47 |
Msa0183560 | Msa0578730 | 0.805474 | 1.311576e-49 | -8.615850e-47 |
Msa0412190 | Msa0578730 | 0.817113 | 3.901625e-52 | -8.615850e-47 |
Msa0267580 | Msa0578730 | 0.943682 | 7.748762e-103 | -8.615850e-47 |
Msa0578730 | Msa0610960 | 0.889796 | 1.756453e-73 | -8.615850e-47 |
Msa0578730 | Msa0610970 | 0.901847 | 1.770257e-78 | -8.615850e-47 |
Msa0578730 | Msa0693730 | 0.934666 | 2.836961e-96 | -8.615850e-47 |
Msa0578730 | Msa0801360 | 0.801867 | 7.353874e-49 | -8.615850e-47 |
Msa0578730 | Msa0839830 | 0.802602 | 5.189662e-49 | -8.615850e-47 |
Msa0578730 | Msa1354090 | 0.803396 | 3.556343e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0578730 | MtrunA17_Chr4g0044331 | 93.548 | 155 | 10 | 0 | 1 | 155 | 1 | 155 | 3.16e-97 | 277 |
Msa0578730 | MtrunA17_Chr7g0271891 | 62.069 | 116 | 42 | 1 | 13 | 128 | 17 | 130 | 8.96e-48 | 152 |
Msa0578730 | MtrunA17_Chr8g0344721 | 45.968 | 124 | 63 | 3 | 5 | 125 | 3 | 125 | 1.30e-33 | 118 |
Msa0578730 | MtrunA17_Chr3g0138471 | 44.828 | 87 | 41 | 2 | 13 | 95 | 5 | 88 | 2.18e-17 | 77.4 |
Msa0578730 | MtrunA17_Chr2g0282741 | 48.571 | 70 | 33 | 1 | 9 | 78 | 1 | 67 | 8.15e-17 | 75.9 |
Msa0578730 | MtrunA17_Chr2g0282761 | 53.030 | 66 | 28 | 1 | 13 | 78 | 5 | 67 | 1.04e-16 | 75.5 |
Msa0578730 | MtrunA17_Chr5g0415731 | 40.404 | 99 | 54 | 2 | 10 | 103 | 3 | 101 | 1.25e-16 | 72.0 |
Msa0578730 | MtrunA17_Chr4g0040501 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 1.48e-16 | 75.1 |
Msa0578730 | MtrunA17_Chr1g0159491 | 52.941 | 68 | 28 | 1 | 13 | 80 | 7 | 70 | 2.70e-16 | 69.3 |
Msa0578730 | MtrunA17_Chr4g0006391 | 48.485 | 66 | 31 | 1 | 13 | 78 | 5 | 67 | 5.20e-16 | 73.6 |
Msa0578730 | MtrunA17_Chr4g0061421 | 49.254 | 67 | 34 | 0 | 13 | 79 | 9 | 75 | 2.48e-15 | 72.0 |
Msa0578730 | MtrunA17_Chr7g0263971 | 52.941 | 68 | 29 | 1 | 13 | 80 | 370 | 434 | 3.92e-15 | 71.6 |
Msa0578730 | MtrunA17_Chr2g0324921 | 47.143 | 70 | 34 | 1 | 9 | 78 | 1 | 67 | 4.17e-15 | 70.9 |
Msa0578730 | MtrunA17_Chr5g0426951 | 50.746 | 67 | 29 | 1 | 12 | 78 | 83 | 145 | 8.00e-15 | 70.5 |
Msa0578730 | MtrunA17_Chr7g0269841 | 53.731 | 67 | 27 | 2 | 12 | 78 | 26 | 88 | 1.30e-14 | 69.7 |
Msa0578730 | MtrunA17_Chr1g0209551 | 44.286 | 70 | 35 | 1 | 14 | 83 | 18 | 83 | 1.05e-13 | 67.4 |
Msa0578730 | MtrunA17_Chr1g0159511 | 52.941 | 68 | 28 | 1 | 11 | 78 | 5 | 68 | 1.14e-13 | 67.0 |
Msa0578730 | MtrunA17_Chr4g0021141 | 45.455 | 66 | 32 | 1 | 13 | 78 | 23 | 84 | 1.57e-13 | 63.5 |
Msa0578730 | MtrunA17_Chr8g0334811 | 43.038 | 79 | 33 | 2 | 4 | 78 | 2 | 72 | 1.75e-13 | 66.6 |
Msa0578730 | MtrunA17_Chr5g0399201 | 47.692 | 65 | 33 | 1 | 14 | 78 | 14 | 77 | 4.23e-13 | 65.9 |
Msa0578730 | MtrunA17_Chr3g0123861 | 49.315 | 73 | 28 | 3 | 13 | 81 | 83 | 150 | 6.48e-13 | 65.1 |
Msa0578730 | MtrunA17_Chr6g0478651 | 36.607 | 112 | 58 | 4 | 13 | 116 | 69 | 175 | 6.69e-13 | 65.1 |
Msa0578730 | MtrunA17_Chr5g0427221 | 48.529 | 68 | 31 | 1 | 13 | 80 | 49 | 112 | 9.44e-13 | 62.0 |
Msa0578730 | MtrunA17_Chr4g0010781 | 45.333 | 75 | 37 | 1 | 4 | 78 | 78 | 148 | 1.01e-12 | 64.7 |
Msa0578730 | MtrunA17_Chr2g0333221 | 50.725 | 69 | 29 | 2 | 10 | 78 | 68 | 131 | 1.20e-12 | 64.3 |
Msa0578730 | MtrunA17_Chr3g0087741 | 41.333 | 75 | 40 | 1 | 4 | 78 | 81 | 151 | 2.07e-12 | 63.5 |
Msa0578730 | MtrunA17_Chr8g0378161 | 43.284 | 67 | 36 | 1 | 12 | 78 | 60 | 124 | 3.07e-12 | 61.6 |
Msa0578730 | MtrunA17_Chr6g0460461 | 38.806 | 67 | 40 | 1 | 13 | 78 | 3 | 69 | 3.68e-12 | 61.6 |
Msa0578730 | MtrunA17_Chr1g0173931 | 44.118 | 68 | 34 | 2 | 11 | 78 | 37 | 100 | 2.24e-11 | 60.1 |
Msa0578730 | MtrunA17_Chr5g0393371 | 47.826 | 69 | 32 | 1 | 11 | 79 | 5 | 69 | 2.49e-11 | 60.5 |
Msa0578730 | MtrunA17_Chr5g0414471 | 37.975 | 79 | 45 | 1 | 14 | 92 | 27 | 101 | 3.26e-11 | 60.1 |
Msa0578730 | MtrunA17_Chr7g0258061 | 44.776 | 67 | 33 | 2 | 12 | 78 | 22 | 84 | 4.79e-11 | 59.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0578730 | AT1G71000.1 | 59.231 | 130 | 51 | 1 | 6 | 135 | 2 | 129 | 2.04e-47 | 151 |
Msa0578730 | AT1G71000.2 | 55.932 | 118 | 50 | 1 | 6 | 123 | 2 | 117 | 1.35e-41 | 137 |
Msa0578730 | AT1G56300.1 | 57.500 | 120 | 49 | 1 | 9 | 128 | 10 | 127 | 2.18e-41 | 136 |
Msa0578730 | AT1G56300.2 | 61.616 | 99 | 38 | 0 | 9 | 107 | 10 | 108 | 2.20e-38 | 127 |
Msa0578730 | AT3G14200.1 | 43.089 | 123 | 66 | 3 | 9 | 128 | 9 | 130 | 8.90e-31 | 111 |
Msa0578730 | AT1G72416.3 | 43.617 | 94 | 51 | 2 | 14 | 107 | 7 | 98 | 3.43e-22 | 88.2 |
Msa0578730 | AT1G72416.2 | 43.617 | 94 | 51 | 2 | 14 | 107 | 7 | 98 | 4.94e-22 | 87.4 |
Msa0578730 | AT1G72416.1 | 43.617 | 94 | 51 | 2 | 14 | 107 | 7 | 98 | 4.98e-22 | 87.4 |
Msa0578730 | AT1G72416.4 | 43.617 | 94 | 51 | 2 | 14 | 107 | 7 | 98 | 4.99e-22 | 87.4 |
Msa0578730 | AT5G25530.2 | 51.515 | 66 | 29 | 1 | 13 | 78 | 5 | 67 | 1.40e-17 | 78.2 |
Msa0578730 | AT4G28480.2 | 47.143 | 70 | 34 | 1 | 9 | 78 | 1 | 67 | 3.47e-16 | 73.9 |
Msa0578730 | AT3G08910.1 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 3.95e-16 | 73.9 |
Msa0578730 | AT5G01390.3 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 4.41e-16 | 72.8 |
Msa0578730 | AT1G59725.1 | 48.485 | 66 | 32 | 1 | 13 | 78 | 5 | 68 | 4.90e-16 | 73.9 |
Msa0578730 | AT5G01390.4 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 5.90e-16 | 72.4 |
Msa0578730 | AT4G28480.1 | 47.143 | 70 | 34 | 1 | 9 | 78 | 1 | 67 | 6.44e-16 | 73.6 |
Msa0578730 | AT5G01390.2 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 7.15e-16 | 72.8 |
Msa0578730 | AT1G10350.1 | 45.455 | 66 | 33 | 1 | 13 | 78 | 5 | 67 | 9.53e-16 | 73.2 |
Msa0578730 | AT5G01390.1 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 1.25e-15 | 72.8 |
Msa0578730 | AT1G74250.1 | 50.000 | 68 | 33 | 1 | 13 | 79 | 12 | 79 | 3.98e-15 | 72.0 |
Msa0578730 | AT3G47940.1 | 47.143 | 70 | 35 | 1 | 9 | 78 | 1 | 68 | 4.32e-15 | 71.2 |
Msa0578730 | AT5G25530.1 | 45.946 | 74 | 29 | 2 | 13 | 78 | 5 | 75 | 5.68e-15 | 71.2 |
Msa0578730 | AT2G20560.1 | 48.485 | 66 | 31 | 1 | 13 | 78 | 5 | 67 | 7.72e-15 | 70.5 |
Msa0578730 | AT5G16650.1 | 46.429 | 84 | 39 | 3 | 1 | 83 | 1 | 79 | 2.49e-14 | 65.9 |
Msa0578730 | AT5G16650.2 | 46.429 | 84 | 39 | 3 | 1 | 83 | 1 | 79 | 4.69e-14 | 66.2 |
Msa0578730 | AT5G03160.1 | 45.588 | 68 | 34 | 1 | 13 | 80 | 371 | 435 | 7.59e-14 | 68.2 |
Msa0578730 | AT2G22360.1 | 43.617 | 94 | 44 | 3 | 13 | 102 | 87 | 175 | 8.93e-14 | 67.8 |
Msa0578730 | AT4G13830.1 | 42.857 | 70 | 38 | 1 | 12 | 81 | 66 | 133 | 2.77e-13 | 63.9 |
Msa0578730 | AT5G06910.1 | 33.129 | 163 | 83 | 7 | 7 | 147 | 23 | 181 | 5.38e-13 | 65.1 |
Msa0578730 | AT4G13830.3 | 42.857 | 70 | 38 | 1 | 12 | 81 | 66 | 133 | 7.32e-13 | 63.5 |
Msa0578730 | AT4G13830.2 | 42.857 | 70 | 38 | 1 | 12 | 81 | 66 | 133 | 1.01e-12 | 63.2 |
Msa0578730 | AT3G62600.1 | 46.377 | 69 | 33 | 1 | 10 | 78 | 24 | 88 | 1.05e-12 | 64.7 |
Msa0578730 | AT2G33735.1 | 45.455 | 66 | 32 | 1 | 13 | 78 | 23 | 84 | 1.23e-12 | 61.2 |
Msa0578730 | AT2G33735.2 | 45.455 | 66 | 32 | 1 | 13 | 78 | 23 | 84 | 1.23e-12 | 61.2 |
Msa0578730 | AT4G39150.3 | 50.000 | 68 | 30 | 1 | 11 | 78 | 5 | 68 | 1.61e-12 | 64.3 |
Msa0578730 | AT4G39150.1 | 50.000 | 68 | 30 | 1 | 11 | 78 | 5 | 68 | 1.61e-12 | 64.3 |
Msa0578730 | AT4G39150.2 | 50.000 | 68 | 30 | 1 | 11 | 78 | 5 | 68 | 1.61e-12 | 64.3 |
Msa0578730 | AT2G41000.1 | 37.681 | 69 | 42 | 1 | 13 | 80 | 4 | 72 | 3.84e-12 | 61.6 |
Msa0578730 | AT4G09350.1 | 47.887 | 71 | 32 | 2 | 12 | 81 | 106 | 172 | 4.59e-12 | 62.4 |
Msa0578730 | AT1G80030.4 | 47.826 | 69 | 31 | 2 | 10 | 78 | 73 | 136 | 5.27e-12 | 62.8 |
Msa0578730 | AT1G80030.2 | 47.826 | 69 | 31 | 2 | 10 | 78 | 73 | 136 | 6.37e-12 | 62.8 |
Msa0578730 | AT1G80030.3 | 47.826 | 69 | 31 | 2 | 10 | 78 | 73 | 136 | 6.37e-12 | 62.8 |
Msa0578730 | AT1G80030.1 | 47.826 | 69 | 31 | 2 | 10 | 78 | 73 | 136 | 6.37e-12 | 62.8 |
Msa0578730 | AT2G41000.2 | 37.681 | 69 | 42 | 1 | 13 | 80 | 4 | 72 | 6.54e-12 | 61.2 |
Msa0578730 | AT2G35720.1 | 43.056 | 72 | 40 | 1 | 7 | 78 | 10 | 80 | 6.72e-12 | 62.8 |
Msa0578730 | AT1G28210.3 | 38.554 | 83 | 47 | 1 | 12 | 94 | 48 | 126 | 6.92e-12 | 62.4 |
Msa0578730 | AT1G28210.1 | 38.554 | 83 | 47 | 1 | 12 | 94 | 48 | 126 | 7.05e-12 | 62.4 |
Msa0578730 | AT1G68370.1 | 44.615 | 65 | 32 | 1 | 14 | 78 | 19 | 79 | 8.32e-12 | 62.4 |
Msa0578730 | AT1G28210.2 | 38.554 | 83 | 47 | 1 | 12 | 94 | 48 | 126 | 8.95e-12 | 62.0 |
Msa0578730 | AT1G24120.1 | 36.709 | 79 | 46 | 1 | 14 | 92 | 22 | 96 | 1.22e-11 | 62.0 |
Msa0578730 | AT3G12170.1 | 32.026 | 153 | 77 | 6 | 12 | 146 | 11 | 154 | 1.39e-11 | 60.8 |
Msa0578730 | AT3G12170.2 | 31.081 | 148 | 85 | 5 | 12 | 146 | 47 | 190 | 2.84e-11 | 60.5 |
Msa0578730 | AT4G39960.1 | 45.455 | 66 | 31 | 1 | 13 | 78 | 86 | 146 | 3.11e-11 | 60.5 |
Msa0578730 | AT4G39960.2 | 45.455 | 66 | 31 | 1 | 13 | 78 | 86 | 146 | 3.11e-11 | 60.5 |
Msa0578730 | AT5G48030.1 | 45.455 | 66 | 32 | 1 | 13 | 78 | 95 | 156 | 3.16e-11 | 60.5 |
Msa0578730 | AT4G10130.2 | 42.105 | 76 | 43 | 1 | 6 | 81 | 5 | 79 | 4.48e-11 | 58.5 |
Msa0578730 | AT4G10130.4 | 42.105 | 76 | 43 | 1 | 6 | 81 | 5 | 79 | 4.48e-11 | 58.5 |
Msa0578730 | AT4G10130.1 | 42.105 | 76 | 43 | 1 | 6 | 81 | 5 | 79 | 4.48e-11 | 58.5 |
Msa0578730 | AT4G10130.3 | 42.105 | 76 | 43 | 1 | 6 | 81 | 5 | 79 | 4.48e-11 | 58.5 |
Msa0578730 | AT4G10130.5 | 42.105 | 76 | 43 | 1 | 6 | 81 | 5 | 79 | 4.48e-11 | 58.5 |
Msa0578730 | AT1G59980.2 | 37.975 | 79 | 45 | 1 | 14 | 92 | 25 | 99 | 4.70e-11 | 60.1 |
Msa0578730 | AT1G59980.1 | 37.975 | 79 | 45 | 1 | 14 | 92 | 25 | 99 | 6.19e-11 | 59.7 |
Msa0578730 | AT2G21510.3 | 45.588 | 68 | 33 | 1 | 11 | 78 | 5 | 68 | 6.91e-11 | 59.7 |
Msa0578730 | AT2G21510.1 | 45.588 | 68 | 33 | 1 | 11 | 78 | 5 | 68 | 6.91e-11 | 59.7 |
Msa0578730 | AT2G21510.5 | 45.588 | 68 | 33 | 1 | 11 | 78 | 5 | 68 | 7.27e-11 | 59.3 |
Msa0578730 | AT2G21510.2 | 45.588 | 68 | 33 | 1 | 11 | 78 | 5 | 68 | 7.58e-11 | 59.3 |
Msa0578730 | AT2G21510.4 | 45.588 | 68 | 33 | 1 | 11 | 78 | 5 | 68 | 7.58e-11 | 59.3 |
Find 47 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAGCTAAAGTCGGTTAATT+AGG | 0.232680 | 4_1:-83323123 | None:intergenic |
TTATTGCAGGAGAAGGTTTA+TGG | 0.240463 | 4_1:+83325347 | Msa0578730:intron |
CAAGGAAAATAATAAATTTA+TGG | 0.246173 | 4_1:-83323167 | None:intergenic |
GGAGAAGGTTTATGGTTTAG+AGG | 0.283100 | 4_1:+83325355 | Msa0578730:intron |
ACCAAACTCAACAACTAAAA+AGG | 0.283729 | 4_1:-83323298 | None:intergenic |
TCATCTTACTACAGTATTCT+TGG | 0.298603 | 4_1:+83323390 | Msa0578730:CDS |
TAATAAATTTATGGAAGTTA+TGG | 0.313874 | 4_1:-83323158 | None:intergenic |
ATGAGATAAGGCGTGCTTAT+AGG | 0.318628 | 4_1:+83323436 | Msa0578730:CDS |
AACATACAAGAAGCTTATTC+AGG | 0.364089 | 4_1:+83323639 | Msa0578730:CDS |
GGTGTTCTTGTCCACCTATC+TGG | 0.379195 | 4_1:-83323582 | None:intergenic |
TTATGGTTTAGAGGAGTTGC+AGG | 0.401445 | 4_1:+83325364 | Msa0578730:CDS |
CTCGCCTAACTTCAGCCATA+AGG | 0.416208 | 4_1:-83323970 | None:intergenic |
CTGTAGTAAGATGACGATAA+TGG | 0.435521 | 4_1:-83323381 | None:intergenic |
GGACGAAATGGTGTCCCTTA+TGG | 0.441713 | 4_1:+83323955 | Msa0578730:CDS |
GGAGTTGCAGGACATGTTCA+TGG | 0.460111 | 4_1:+83325376 | Msa0578730:CDS |
AGAGTCCTTCAATGTATTGT+GGG | 0.465130 | 4_1:+83325417 | Msa0578730:CDS |
GTATTGTGGGACACCGTCTA+TGG | 0.469755 | 4_1:+83325430 | Msa0578730:CDS |
ATTCTTCATTAGATGAGATA+AGG | 0.473305 | 4_1:+83323424 | Msa0578730:CDS |
TCGCCTAACTTCAGCCATAA+GGG | 0.480132 | 4_1:-83323969 | None:intergenic |
ACCTCATCTTCTTCCTCTTG+AGG | 0.492857 | 4_1:-83323809 | None:intergenic |
TGCTTATAGGAAGCTTGCTA+TGG | 0.497498 | 4_1:+83323449 | Msa0578730:CDS |
GAGAGTCCTTCAATGTATTG+TGG | 0.499022 | 4_1:+83325416 | Msa0578730:CDS |
TGTCCCTTATGGCTGAAGTT+AGG | 0.499106 | 4_1:+83323966 | Msa0578730:CDS |
CTAAAGTCGGTTAATTAGGA+AGG | 0.501953 | 4_1:-83323119 | None:intergenic |
AAAAGAACTATGTACGATGC+TGG | 0.511823 | 4_1:+83323776 | Msa0578730:CDS |
TATGTTCTGAAATTTACGCT+TGG | 0.515893 | 4_1:-83323622 | None:intergenic |
TGCAGCAATGGCATCCAGAT+AGG | 0.538770 | 4_1:+83323568 | Msa0578730:intron |
ACAATGGATGATTATAGTGA+AGG | 0.543818 | 4_1:+83323357 | Msa0578730:exon |
AACACTTCCTCTCTTAGCAA+AGG | 0.546362 | 4_1:-83325462 | None:intergenic |
ATTGACAAGGGAACGGAACA+AGG | 0.559042 | 4_1:-83323185 | None:intergenic |
CAATGGATGATTATAGTGAA+GGG | 0.570763 | 4_1:+83323358 | Msa0578730:exon |
ATATTTATTGAAGCTAAAGT+CGG | 0.576457 | 4_1:-83323132 | None:intergenic |
TTGGCTTCACTCAATAAAGA+AGG | 0.580558 | 4_1:-83323603 | None:intergenic |
GCAGGACATGTTCATGGAGA+TGG | 0.589641 | 4_1:+83325382 | Msa0578730:CDS |
ATGTTCATGGAGATGGCTGA+AGG | 0.590061 | 4_1:+83325389 | Msa0578730:CDS |
GGTGTCCCACAATACATTGA+AGG | 0.591958 | 4_1:-83325422 | None:intergenic |
TCCTCAAGAGGAAGAAGATG+AGG | 0.607948 | 4_1:+83323808 | Msa0578730:CDS |
GATGAATCCTTTGCTAAGAG+AGG | 0.608489 | 4_1:+83325455 | Msa0578730:CDS |
TAAAGTCGGTTAATTAGGAA+GGG | 0.610354 | 4_1:-83323118 | None:intergenic |
AAGGATTCATCAACCATAGA+CGG | 0.618990 | 4_1:-83325443 | None:intergenic |
ATGGTTTAAACGAGTTACAA+TGG | 0.625435 | 4_1:+83323341 | Msa0578730:exon |
GATTGCATGCATAATTGACA+AGG | 0.653903 | 4_1:-83323198 | None:intergenic |
TGGCTTGTATGATCCTCAAG+AGG | 0.660837 | 4_1:+83323796 | Msa0578730:CDS |
ATGCATAATTGACAAGGGAA+CGG | 0.667700 | 4_1:-83323192 | None:intergenic |
TATGGCTGAAGTTAGGCGAG+AGG | 0.677695 | 4_1:+83323973 | Msa0578730:CDS |
AGCAATGGCATCCAGATAGG+TGG | 0.677774 | 4_1:+83323571 | Msa0578730:intron |
ATTGCATGCATAATTGACAA+GGG | 0.759001 | 4_1:-83323197 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATAAATTTATGGAAGTTA+TGG | - | chr4_1:83323161-83323180 | None:intergenic | 15.0% |
!! | CAAGGAAAATAATAAATTTA+TGG | - | chr4_1:83323170-83323189 | None:intergenic | 15.0% |
!!! | TTTTGTTTATTAGTTTGTTA+TGG | + | chr4_1:83323884-83323903 | Msa0578730:intron | 15.0% |
!!! | AAGTGTTCATTTAAATTTTA+CGG | + | chr4_1:83324258-83324277 | Msa0578730:intron | 15.0% |
!!! | AAGTGTTCATTTAAATTTTA+CGG | + | chr4_1:83324258-83324277 | Msa0578730:intron | 15.0% |
!!! | TGATAGATATTTTTTATTGA+AGG | + | chr4_1:83325133-83325152 | Msa0578730:intron | 15.0% |
!!! | GATAGATATTTTTTATTGAA+GGG | + | chr4_1:83325134-83325153 | Msa0578730:intron | 15.0% |
!! | CAATAAGATATATACATATA+TGG | - | chr4_1:83325333-83325352 | None:intergenic | 15.0% |
!! | ATATTTATTGAAGCTAAAGT+CGG | - | chr4_1:83323135-83323154 | None:intergenic | 20.0% |
!!! | TGTGAATTTTTGTATCATTT+TGG | + | chr4_1:83323682-83323701 | Msa0578730:intron | 20.0% |
!!! | AATTTTTGTATCATTTTGGT+GGG | + | chr4_1:83323686-83323705 | Msa0578730:intron | 20.0% |
!!! | ACATGTTTGTTTCTAATTTT+AGG | + | chr4_1:83323916-83323935 | Msa0578730:intron | 20.0% |
!! | AATGAATGTTGAAAATTTGA+AGG | + | chr4_1:83324224-83324243 | Msa0578730:intron | 20.0% |
!! | AATGAATGTTGAAAATTTGA+AGG | + | chr4_1:83324224-83324243 | Msa0578730:intron | 20.0% |
!!! | GAAAAGATTAGTAAATGTTT+TGG | + | chr4_1:83324510-83324529 | Msa0578730:intron | 20.0% |
!! | CATTTATCTTGTAAATGTAA+AGG | - | chr4_1:83325053-83325072 | None:intergenic | 20.0% |
!! | CTTTACATTTACAAGATAAA+TGG | + | chr4_1:83325051-83325070 | Msa0578730:intron | 20.0% |
!! | AAAAAAAAAAAAAAAGACCC+AGG | + | chr4_1:83325204-83325223 | Msa0578730:intron | 20.0% |
!!! | GTCTTGAATTTTTAACATAA+AGG | + | chr4_1:83325261-83325280 | Msa0578730:intron | 20.0% |
!! | ATATGTATATATCTTATTGC+AGG | + | chr4_1:83325334-83325353 | Msa0578730:intron | 20.0% |
!! | AAATGAGACAAGTATGTTTT+TGG | - | chr4_1:83323257-83323276 | None:intergenic | 25.0% |
!!! | CATATTTTATTTCTAGTGCA+TGG | + | chr4_1:83323322-83323341 | Msa0578730:five_prime_UTR | 25.0% |
! | ATTCTTCATTAGATGAGATA+AGG | + | chr4_1:83323424-83323443 | Msa0578730:CDS | 25.0% |
! | CAATGCAAATGACAAAAAAA+GGG | - | chr4_1:83323491-83323510 | None:intergenic | 25.0% |
! | ACAATGCAAATGACAAAAAA+AGG | - | chr4_1:83323492-83323511 | None:intergenic | 25.0% |
!! | GAATTTTTGTATCATTTTGG+TGG | + | chr4_1:83323685-83323704 | Msa0578730:intron | 25.0% |
!!! | GTTTTCTGTTTTGTTTTGTT+TGG | + | chr4_1:83323731-83323750 | Msa0578730:intron | 25.0% |
! | ACAATCTTCAAGAAAAACTA+AGG | - | chr4_1:83323859-83323878 | None:intergenic | 25.0% |
!! | TTAGGATTTTTCTGATTTTG+TGG | + | chr4_1:83323934-83323953 | Msa0578730:intron | 25.0% |
!! | CAAGATCAAACTTTTCTAAT+AGG | - | chr4_1:83324020-83324039 | None:intergenic | 25.0% |
! | CTATTAGAAAAGTTTGATCT+TGG | + | chr4_1:83324018-83324037 | Msa0578730:intron | 25.0% |
! | TTAATGAGATTTCATGACTA+TGG | + | chr4_1:83324063-83324082 | Msa0578730:intron | 25.0% |
! | TAATGAGATTTCATGACTAT+GGG | + | chr4_1:83324064-83324083 | Msa0578730:intron | 25.0% |
!! | AATTCAAAATTTTGCACCTT+AGG | - | chr4_1:83324099-83324118 | None:intergenic | 25.0% |
!!! | TCACTTTTTAGATTTGGTTT+GGG | - | chr4_1:83324141-83324160 | None:intergenic | 25.0% |
!!! | ATTCACTCACTTTTTAGATT+TGG | - | chr4_1:83324147-83324166 | None:intergenic | 25.0% |
! | AAAGATAGAGATAAAACACA+TGG | + | chr4_1:83324188-83324207 | Msa0578730:intron | 25.0% |
! | AAAGATAGAGATAAAACACA+TGG | + | chr4_1:83324188-83324207 | Msa0578730:intron | 25.0% |
!! | GTTCATTTAAATTTTACGGA+AGG | + | chr4_1:83324262-83324281 | Msa0578730:intron | 25.0% |
!! | GAAAAGATTAGTAACAGTTT+TGG | + | chr4_1:83324462-83324481 | Msa0578730:intron | 25.0% |
! | AATGAAAATGAATGAGTAGA+TGG | + | chr4_1:83324547-83324566 | Msa0578730:intron | 25.0% |
! | TTAATAAGACAACTCAGTAA+AGG | + | chr4_1:83324570-83324589 | Msa0578730:intron | 25.0% |
! | TAATAAGACAACTCAGTAAA+GGG | + | chr4_1:83324571-83324590 | Msa0578730:intron | 25.0% |
!! | GGAAAGATTAGTAAATGTTT+TGG | + | chr4_1:83324595-83324614 | Msa0578730:intron | 25.0% |
! | AATGAAAATGAATGAGTAGA+TGG | + | chr4_1:83324547-83324566 | Msa0578730:intron | 25.0% |
! | CTAACTCAATCTTACAAAAA+CGG | + | chr4_1:83324942-83324961 | Msa0578730:intron | 25.0% |
TAAAGTCGGTTAATTAGGAA+GGG | - | chr4_1:83323121-83323140 | None:intergenic | 30.0% | |
ATTGCATGCATAATTGACAA+GGG | - | chr4_1:83323200-83323219 | None:intergenic | 30.0% | |
CAACAACTAAAAAGGAATCA+AGG | - | chr4_1:83323293-83323312 | None:intergenic | 30.0% | |
!!! | TCCTTTTTAGTTGTTGAGTT+TGG | + | chr4_1:83323297-83323316 | Msa0578730:five_prime_UTR | 30.0% |
ACCAAACTCAACAACTAAAA+AGG | - | chr4_1:83323301-83323320 | None:intergenic | 30.0% | |
ATGGTTTAAACGAGTTACAA+TGG | + | chr4_1:83323341-83323360 | Msa0578730:exon | 30.0% | |
ACAATGGATGATTATAGTGA+AGG | + | chr4_1:83323357-83323376 | Msa0578730:exon | 30.0% | |
CAATGGATGATTATAGTGAA+GGG | + | chr4_1:83323358-83323377 | Msa0578730:exon | 30.0% | |
TCATCTTACTACAGTATTCT+TGG | + | chr4_1:83323390-83323409 | Msa0578730:CDS | 30.0% | |
!! | TGAATTTTGATCTGAATGTG+AGG | + | chr4_1:83323522-83323541 | Msa0578730:intron | 30.0% |
!! | TATGTTCTGAAATTTACGCT+TGG | - | chr4_1:83323625-83323644 | None:intergenic | 30.0% |
AACATACAAGAAGCTTATTC+AGG | + | chr4_1:83323639-83323658 | Msa0578730:CDS | 30.0% | |
! | TCGTACATAGTTCTTTTCTT+GGG | - | chr4_1:83323773-83323792 | None:intergenic | 30.0% |
! | ATCGTACATAGTTCTTTTCT+TGG | - | chr4_1:83323774-83323793 | None:intergenic | 30.0% |
! | CAAACTTTTCTAATAGGAAG+TGG | - | chr4_1:83324014-83324033 | None:intergenic | 30.0% |
!!! | CTCACTTTTTAGATTTGGTT+TGG | - | chr4_1:83324142-83324161 | None:intergenic | 30.0% |
TGAAAAGACAACTCAGTAAA+GGG | + | chr4_1:83324438-83324457 | Msa0578730:intron | 30.0% | |
ATCAAAAGACAACTCAGTAA+AGG | + | chr4_1:83324485-83324504 | Msa0578730:intron | 30.0% | |
TCAAAAGACAACTCAGTAAA+GGG | + | chr4_1:83324486-83324505 | Msa0578730:intron | 30.0% | |
AATCTTAGACTTAGAAATCG+TGG | + | chr4_1:83324679-83324698 | Msa0578730:intron | 30.0% | |
! | CGTTTTTGTAAGATTGAGTT+AGG | - | chr4_1:83324944-83324963 | None:intergenic | 30.0% |
TTAAAAGTCTCACATCAGAT+AGG | - | chr4_1:83325017-83325036 | None:intergenic | 30.0% | |
ATATATCTTATTGCAGGAGA+AGG | + | chr4_1:83325340-83325359 | Msa0578730:intron | 30.0% | |
CTAAAGTCGGTTAATTAGGA+AGG | - | chr4_1:83323122-83323141 | None:intergenic | 35.0% | |
GAAGCTAAAGTCGGTTAATT+AGG | - | chr4_1:83323126-83323145 | None:intergenic | 35.0% | |
ATGCATAATTGACAAGGGAA+CGG | - | chr4_1:83323195-83323214 | None:intergenic | 35.0% | |
GATTGCATGCATAATTGACA+AGG | - | chr4_1:83323201-83323220 | None:intergenic | 35.0% | |
CTGTAGTAAGATGACGATAA+TGG | - | chr4_1:83323384-83323403 | None:intergenic | 35.0% | |
AATTTCAATGCATGCAGCAA+TGG | + | chr4_1:83323556-83323575 | Msa0578730:intron | 35.0% | |
TTGGCTTCACTCAATAAAGA+AGG | - | chr4_1:83323606-83323625 | None:intergenic | 35.0% | |
AAAAGAACTATGTACGATGC+TGG | + | chr4_1:83323776-83323795 | Msa0578730:CDS | 35.0% | |
! | TTCTGATTTTGTGGACGAAA+TGG | + | chr4_1:83323943-83323962 | Msa0578730:CDS | 35.0% |
CTATGGGTACTTATATCCTA+AGG | + | chr4_1:83324080-83324099 | Msa0578730:intron | 35.0% | |
GAAGGTAACAACTCAGTAAA+GGG | + | chr4_1:83324415-83324434 | Msa0578730:intron | 35.0% | |
GTGAAAAGACAACTCAGTAA+AGG | + | chr4_1:83324437-83324456 | Msa0578730:intron | 35.0% | |
TTAGACTTAGAAATCGTGGT+TGG | + | chr4_1:83324683-83324702 | Msa0578730:intron | 35.0% | |
!!! | TAAGCTGGTTTTGTTGAGTT+GGG | - | chr4_1:83324715-83324734 | None:intergenic | 35.0% |
!!! | ATAAGCTGGTTTTGTTGAGT+TGG | - | chr4_1:83324716-83324735 | None:intergenic | 35.0% |
AGCGAAAACTTAATAGCAGA+TGG | + | chr4_1:83324866-83324885 | Msa0578730:intron | 35.0% | |
CTTAATAGCAGATGGTCTAA+CGG | + | chr4_1:83324874-83324893 | Msa0578730:intron | 35.0% | |
TGATACCATCTTAGAAATCG+TGG | + | chr4_1:83324913-83324932 | Msa0578730:intron | 35.0% | |
AAACTGTGCTGCAAGTTTAA+AGG | - | chr4_1:83325098-83325117 | None:intergenic | 35.0% | |
TTATTGCAGGAGAAGGTTTA+TGG | + | chr4_1:83325347-83325366 | Msa0578730:intron | 35.0% | |
AGAGTCCTTCAATGTATTGT+GGG | + | chr4_1:83325417-83325436 | Msa0578730:CDS | 35.0% | |
AAGGATTCATCAACCATAGA+CGG | - | chr4_1:83325446-83325465 | None:intergenic | 35.0% | |
ATGAGATAAGGCGTGCTTAT+AGG | + | chr4_1:83323436-83323455 | Msa0578730:CDS | 40.0% | |
!! | TGCTTATAGGAAGCTTGCTA+TGG | + | chr4_1:83323449-83323468 | Msa0578730:CDS | 40.0% |
GGAAGGTAACAACTCAGTAA+AGG | + | chr4_1:83324414-83324433 | Msa0578730:intron | 40.0% | |
TAAGACAACTCAGTAAAGGG+TGG | + | chr4_1:83324574-83324593 | Msa0578730:intron | 40.0% | |
CTCAACAAAACCAGCTTATG+AGG | + | chr4_1:83324717-83324736 | Msa0578730:intron | 40.0% | |
AACAAAACCAGCTTATGAGG+TGG | + | chr4_1:83324720-83324739 | Msa0578730:intron | 40.0% | |
ACAAAACCAGCTTATGAGGT+GGG | + | chr4_1:83324721-83324740 | Msa0578730:intron | 40.0% | |
TAAAGAGTCCCACATCGAAT+AGG | - | chr4_1:83324784-83324803 | None:intergenic | 40.0% | |
ATATGGGGCATGGACATAAA+TGG | + | chr4_1:83324830-83324849 | Msa0578730:intron | 40.0% | |
ACCATCTTAGAAATCGTGGT+TGG | + | chr4_1:83324917-83324936 | Msa0578730:intron | 40.0% | |
CCATCTTAGAAATCGTGGTT+GGG | + | chr4_1:83324918-83324937 | Msa0578730:intron | 40.0% | |
ACAGACATTCTTAGGGGTTT+AGG | + | chr4_1:83325229-83325248 | Msa0578730:intron | 40.0% | |
GGAGAAGGTTTATGGTTTAG+AGG | + | chr4_1:83325355-83325374 | Msa0578730:intron | 40.0% | |
TTATGGTTTAGAGGAGTTGC+AGG | + | chr4_1:83325364-83325383 | Msa0578730:CDS | 40.0% | |
GAGAGTCCTTCAATGTATTG+TGG | + | chr4_1:83325416-83325435 | Msa0578730:CDS | 40.0% | |
GATGAATCCTTTGCTAAGAG+AGG | + | chr4_1:83325455-83325474 | Msa0578730:CDS | 40.0% | |
AACACTTCCTCTCTTAGCAA+AGG | - | chr4_1:83325465-83325484 | None:intergenic | 40.0% | |
ATTGACAAGGGAACGGAACA+AGG | - | chr4_1:83323188-83323207 | None:intergenic | 45.0% | |
! | TGGCTTGTATGATCCTCAAG+AGG | + | chr4_1:83323796-83323815 | Msa0578730:CDS | 45.0% |
TCCTCAAGAGGAAGAAGATG+AGG | + | chr4_1:83323808-83323827 | Msa0578730:CDS | 45.0% | |
ACCTCATCTTCTTCCTCTTG+AGG | - | chr4_1:83323812-83323831 | None:intergenic | 45.0% | |
TGTCCCTTATGGCTGAAGTT+AGG | + | chr4_1:83323966-83323985 | Msa0578730:CDS | 45.0% | |
TCGCCTAACTTCAGCCATAA+GGG | - | chr4_1:83323972-83323991 | None:intergenic | 45.0% | |
CAAAACCAGCTTATGAGGTG+GGG | + | chr4_1:83324722-83324741 | Msa0578730:intron | 45.0% | |
AGACCATCTCCTATTCGATG+TGG | + | chr4_1:83324772-83324791 | Msa0578730:intron | 45.0% | |
GACCATCTCCTATTCGATGT+GGG | + | chr4_1:83324773-83324792 | Msa0578730:intron | 45.0% | |
!! | ATGTCTAGTCTTGGACGCAA+GGG | - | chr4_1:83324812-83324831 | None:intergenic | 45.0% |
!! | TATGTCTAGTCTTGGACGCA+AGG | - | chr4_1:83324813-83324832 | None:intergenic | 45.0% |
TGCGTCCAAGACTAGACATA+TGG | + | chr4_1:83324813-83324832 | Msa0578730:intron | 45.0% | |
GCGTCCAAGACTAGACATAT+GGG | + | chr4_1:83324814-83324833 | Msa0578730:intron | 45.0% | |
CGTCCAAGACTAGACATATG+GGG | + | chr4_1:83324815-83324834 | Msa0578730:intron | 45.0% | |
ATGCCCCATATGTCTAGTCT+TGG | - | chr4_1:83324821-83324840 | None:intergenic | 45.0% | |
AAGACTAGACATATGGGGCA+TGG | + | chr4_1:83324820-83324839 | Msa0578730:intron | 45.0% | |
! | GATGGTCTAACGGATCTTAG+AGG | + | chr4_1:83324884-83324903 | Msa0578730:intron | 45.0% |
! | CCCAACCACGATTTCTAAGA+TGG | - | chr4_1:83324921-83324940 | None:intergenic | 45.0% |
CAAAAACGGTTTGTGAGACG+AGG | + | chr4_1:83324956-83324975 | Msa0578730:intron | 45.0% | |
CCTAAGAATGTCTGTGACCT+GGG | - | chr4_1:83325224-83325243 | None:intergenic | 45.0% | |
CCAGGTCACAGACATTCTTA+GGG | + | chr4_1:83325222-83325241 | Msa0578730:intron | 45.0% | |
CAGGTCACAGACATTCTTAG+GGG | + | chr4_1:83325223-83325242 | Msa0578730:intron | 45.0% | |
ATGTTCATGGAGATGGCTGA+AGG | + | chr4_1:83325389-83325408 | Msa0578730:CDS | 45.0% | |
GGTGTCCCACAATACATTGA+AGG | - | chr4_1:83325425-83325444 | None:intergenic | 45.0% | |
!!! | TTTTTTTTTTTTTTTTTTTG+TGG | - | chr4_1:83325199-83325218 | None:intergenic | 5.0% |
TGCAGCAATGGCATCCAGAT+AGG | + | chr4_1:83323568-83323587 | Msa0578730:intron | 50.0% | |
AGCAATGGCATCCAGATAGG+TGG | + | chr4_1:83323571-83323590 | Msa0578730:intron | 50.0% | |
GGTGTTCTTGTCCACCTATC+TGG | - | chr4_1:83323585-83323604 | None:intergenic | 50.0% | |
GGACGAAATGGTGTCCCTTA+TGG | + | chr4_1:83323955-83323974 | Msa0578730:CDS | 50.0% | |
CTCGCCTAACTTCAGCCATA+AGG | - | chr4_1:83323973-83323992 | None:intergenic | 50.0% | |
TATGGCTGAAGTTAGGCGAG+AGG | + | chr4_1:83323973-83323992 | Msa0578730:CDS | 50.0% | |
ACAATCCCCACCTCATAAGC+TGG | - | chr4_1:83324730-83324749 | None:intergenic | 50.0% | |
GTCCCACATCGAATAGGAGA+TGG | - | chr4_1:83324778-83324797 | None:intergenic | 50.0% | |
!! | TGTCTAGTCTTGGACGCAAG+GGG | - | chr4_1:83324811-83324830 | None:intergenic | 50.0% |
TGGGGCATGGACATAAATGG+TGG | + | chr4_1:83324833-83324852 | Msa0578730:intron | 50.0% | |
GGGGCATGGACATAAATGGT+GGG | + | chr4_1:83324834-83324853 | Msa0578730:intron | 50.0% | |
! | GCATGGACATAAATGGTGGG+TGG | + | chr4_1:83324837-83324856 | Msa0578730:intron | 50.0% |
CCCAGGTCACAGACATTCTT+AGG | + | chr4_1:83325221-83325240 | Msa0578730:intron | 50.0% | |
CCCTAAGAATGTCTGTGACC+TGG | - | chr4_1:83325225-83325244 | None:intergenic | 50.0% | |
GGAGTTGCAGGACATGTTCA+TGG | + | chr4_1:83325376-83325395 | Msa0578730:CDS | 50.0% | |
GCAGGACATGTTCATGGAGA+TGG | + | chr4_1:83325382-83325401 | Msa0578730:CDS | 50.0% | |
GTATTGTGGGACACCGTCTA+TGG | + | chr4_1:83325430-83325449 | Msa0578730:CDS | 50.0% | |
!! | GTCTAGTCTTGGACGCAAGG+GGG | - | chr4_1:83324810-83324829 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_1 | gene | 83323110 | 83325496 | 83323110 | ID=Msa0578730;Name=Msa0578730 |
chr4_1 | mRNA | 83323110 | 83325496 | 83323110 | ID=Msa0578730-mRNA-1;Parent=Msa0578730;Name=Msa0578730-mRNA-1;_AED=0.15;_eAED=0.15;_QI=250|1|0.8|1|1|1|5|0|155 |
chr4_1 | exon | 83323110 | 83323470 | 83323110 | ID=Msa0578730-mRNA-1:exon:30356;Parent=Msa0578730-mRNA-1 |
chr4_1 | exon | 83323573 | 83323660 | 83323573 | ID=Msa0578730-mRNA-1:exon:30357;Parent=Msa0578730-mRNA-1 |
chr4_1 | exon | 83323759 | 83323829 | 83323759 | ID=Msa0578730-mRNA-1:exon:30358;Parent=Msa0578730-mRNA-1 |
chr4_1 | exon | 83323938 | 83323994 | 83323938 | ID=Msa0578730-mRNA-1:exon:30359;Parent=Msa0578730-mRNA-1 |
chr4_1 | exon | 83325356 | 83325496 | 83325356 | ID=Msa0578730-mRNA-1:exon:30360;Parent=Msa0578730-mRNA-1 |
chr4_1 | five_prime_UTR | 83323110 | 83323359 | 83323110 | ID=Msa0578730-mRNA-1:five_prime_utr;Parent=Msa0578730-mRNA-1 |
chr4_1 | CDS | 83323360 | 83323470 | 83323360 | ID=Msa0578730-mRNA-1:cds;Parent=Msa0578730-mRNA-1 |
chr4_1 | CDS | 83323573 | 83323660 | 83323573 | ID=Msa0578730-mRNA-1:cds;Parent=Msa0578730-mRNA-1 |
chr4_1 | CDS | 83323759 | 83323829 | 83323759 | ID=Msa0578730-mRNA-1:cds;Parent=Msa0578730-mRNA-1 |
chr4_1 | CDS | 83323938 | 83323994 | 83323938 | ID=Msa0578730-mRNA-1:cds;Parent=Msa0578730-mRNA-1 |
chr4_1 | CDS | 83325356 | 83325496 | 83325356 | ID=Msa0578730-mRNA-1:cds;Parent=Msa0578730-mRNA-1 |
Gene Sequence |
Protein sequence |