AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0578730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578730 MtrunA17_Chr4g0044331 93.548 155 10 0 1 155 1 155 3.16e-97 277
Msa0578730 MtrunA17_Chr7g0271891 62.069 116 42 1 13 128 17 130 8.96e-48 152
Msa0578730 MtrunA17_Chr8g0344721 45.968 124 63 3 5 125 3 125 1.30e-33 118
Msa0578730 MtrunA17_Chr3g0138471 44.828 87 41 2 13 95 5 88 2.18e-17 77.4
Msa0578730 MtrunA17_Chr2g0282741 48.571 70 33 1 9 78 1 67 8.15e-17 75.9
Msa0578730 MtrunA17_Chr2g0282761 53.030 66 28 1 13 78 5 67 1.04e-16 75.5
Msa0578730 MtrunA17_Chr5g0415731 40.404 99 54 2 10 103 3 101 1.25e-16 72.0
Msa0578730 MtrunA17_Chr4g0040501 50.000 66 30 1 13 78 5 67 1.48e-16 75.1
Msa0578730 MtrunA17_Chr1g0159491 52.941 68 28 1 13 80 7 70 2.70e-16 69.3
Msa0578730 MtrunA17_Chr4g0006391 48.485 66 31 1 13 78 5 67 5.20e-16 73.6
Msa0578730 MtrunA17_Chr4g0061421 49.254 67 34 0 13 79 9 75 2.48e-15 72.0
Msa0578730 MtrunA17_Chr7g0263971 52.941 68 29 1 13 80 370 434 3.92e-15 71.6
Msa0578730 MtrunA17_Chr2g0324921 47.143 70 34 1 9 78 1 67 4.17e-15 70.9
Msa0578730 MtrunA17_Chr5g0426951 50.746 67 29 1 12 78 83 145 8.00e-15 70.5
Msa0578730 MtrunA17_Chr7g0269841 53.731 67 27 2 12 78 26 88 1.30e-14 69.7
Msa0578730 MtrunA17_Chr1g0209551 44.286 70 35 1 14 83 18 83 1.05e-13 67.4
Msa0578730 MtrunA17_Chr1g0159511 52.941 68 28 1 11 78 5 68 1.14e-13 67.0
Msa0578730 MtrunA17_Chr4g0021141 45.455 66 32 1 13 78 23 84 1.57e-13 63.5
Msa0578730 MtrunA17_Chr8g0334811 43.038 79 33 2 4 78 2 72 1.75e-13 66.6
Msa0578730 MtrunA17_Chr5g0399201 47.692 65 33 1 14 78 14 77 4.23e-13 65.9
Msa0578730 MtrunA17_Chr3g0123861 49.315 73 28 3 13 81 83 150 6.48e-13 65.1
Msa0578730 MtrunA17_Chr6g0478651 36.607 112 58 4 13 116 69 175 6.69e-13 65.1
Msa0578730 MtrunA17_Chr5g0427221 48.529 68 31 1 13 80 49 112 9.44e-13 62.0
Msa0578730 MtrunA17_Chr4g0010781 45.333 75 37 1 4 78 78 148 1.01e-12 64.7
Msa0578730 MtrunA17_Chr2g0333221 50.725 69 29 2 10 78 68 131 1.20e-12 64.3
Msa0578730 MtrunA17_Chr3g0087741 41.333 75 40 1 4 78 81 151 2.07e-12 63.5
Msa0578730 MtrunA17_Chr8g0378161 43.284 67 36 1 12 78 60 124 3.07e-12 61.6
Msa0578730 MtrunA17_Chr6g0460461 38.806 67 40 1 13 78 3 69 3.68e-12 61.6
Msa0578730 MtrunA17_Chr1g0173931 44.118 68 34 2 11 78 37 100 2.24e-11 60.1
Msa0578730 MtrunA17_Chr5g0393371 47.826 69 32 1 11 79 5 69 2.49e-11 60.5
Msa0578730 MtrunA17_Chr5g0414471 37.975 79 45 1 14 92 27 101 3.26e-11 60.1
Msa0578730 MtrunA17_Chr7g0258061 44.776 67 33 2 12 78 22 84 4.79e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0578730 AT1G71000.1 59.231 130 51 1 6 135 2 129 2.04e-47 151
Msa0578730 AT1G71000.2 55.932 118 50 1 6 123 2 117 1.35e-41 137
Msa0578730 AT1G56300.1 57.500 120 49 1 9 128 10 127 2.18e-41 136
Msa0578730 AT1G56300.2 61.616 99 38 0 9 107 10 108 2.20e-38 127
Msa0578730 AT3G14200.1 43.089 123 66 3 9 128 9 130 8.90e-31 111
Msa0578730 AT1G72416.3 43.617 94 51 2 14 107 7 98 3.43e-22 88.2
Msa0578730 AT1G72416.2 43.617 94 51 2 14 107 7 98 4.94e-22 87.4
Msa0578730 AT1G72416.1 43.617 94 51 2 14 107 7 98 4.98e-22 87.4
Msa0578730 AT1G72416.4 43.617 94 51 2 14 107 7 98 4.99e-22 87.4
Msa0578730 AT5G25530.2 51.515 66 29 1 13 78 5 67 1.40e-17 78.2
Msa0578730 AT4G28480.2 47.143 70 34 1 9 78 1 67 3.47e-16 73.9
Msa0578730 AT3G08910.1 50.000 66 30 1 13 78 5 67 3.95e-16 73.9
Msa0578730 AT5G01390.3 50.000 66 30 1 13 78 5 67 4.41e-16 72.8
Msa0578730 AT1G59725.1 48.485 66 32 1 13 78 5 68 4.90e-16 73.9
Msa0578730 AT5G01390.4 50.000 66 30 1 13 78 5 67 5.90e-16 72.4
Msa0578730 AT4G28480.1 47.143 70 34 1 9 78 1 67 6.44e-16 73.6
Msa0578730 AT5G01390.2 50.000 66 30 1 13 78 5 67 7.15e-16 72.8
Msa0578730 AT1G10350.1 45.455 66 33 1 13 78 5 67 9.53e-16 73.2
Msa0578730 AT5G01390.1 50.000 66 30 1 13 78 5 67 1.25e-15 72.8
Msa0578730 AT1G74250.1 50.000 68 33 1 13 79 12 79 3.98e-15 72.0
Msa0578730 AT3G47940.1 47.143 70 35 1 9 78 1 68 4.32e-15 71.2
Msa0578730 AT5G25530.1 45.946 74 29 2 13 78 5 75 5.68e-15 71.2
Msa0578730 AT2G20560.1 48.485 66 31 1 13 78 5 67 7.72e-15 70.5
Msa0578730 AT5G16650.1 46.429 84 39 3 1 83 1 79 2.49e-14 65.9
Msa0578730 AT5G16650.2 46.429 84 39 3 1 83 1 79 4.69e-14 66.2
Msa0578730 AT5G03160.1 45.588 68 34 1 13 80 371 435 7.59e-14 68.2
Msa0578730 AT2G22360.1 43.617 94 44 3 13 102 87 175 8.93e-14 67.8
Msa0578730 AT4G13830.1 42.857 70 38 1 12 81 66 133 2.77e-13 63.9
Msa0578730 AT5G06910.1 33.129 163 83 7 7 147 23 181 5.38e-13 65.1
Msa0578730 AT4G13830.3 42.857 70 38 1 12 81 66 133 7.32e-13 63.5
Msa0578730 AT4G13830.2 42.857 70 38 1 12 81 66 133 1.01e-12 63.2
Msa0578730 AT3G62600.1 46.377 69 33 1 10 78 24 88 1.05e-12 64.7
Msa0578730 AT2G33735.1 45.455 66 32 1 13 78 23 84 1.23e-12 61.2
Msa0578730 AT2G33735.2 45.455 66 32 1 13 78 23 84 1.23e-12 61.2
Msa0578730 AT4G39150.3 50.000 68 30 1 11 78 5 68 1.61e-12 64.3
Msa0578730 AT4G39150.1 50.000 68 30 1 11 78 5 68 1.61e-12 64.3
Msa0578730 AT4G39150.2 50.000 68 30 1 11 78 5 68 1.61e-12 64.3
Msa0578730 AT2G41000.1 37.681 69 42 1 13 80 4 72 3.84e-12 61.6
Msa0578730 AT4G09350.1 47.887 71 32 2 12 81 106 172 4.59e-12 62.4
Msa0578730 AT1G80030.4 47.826 69 31 2 10 78 73 136 5.27e-12 62.8
Msa0578730 AT1G80030.2 47.826 69 31 2 10 78 73 136 6.37e-12 62.8
Msa0578730 AT1G80030.3 47.826 69 31 2 10 78 73 136 6.37e-12 62.8
Msa0578730 AT1G80030.1 47.826 69 31 2 10 78 73 136 6.37e-12 62.8
Msa0578730 AT2G41000.2 37.681 69 42 1 13 80 4 72 6.54e-12 61.2
Msa0578730 AT2G35720.1 43.056 72 40 1 7 78 10 80 6.72e-12 62.8
Msa0578730 AT1G28210.3 38.554 83 47 1 12 94 48 126 6.92e-12 62.4
Msa0578730 AT1G28210.1 38.554 83 47 1 12 94 48 126 7.05e-12 62.4
Msa0578730 AT1G68370.1 44.615 65 32 1 14 78 19 79 8.32e-12 62.4
Msa0578730 AT1G28210.2 38.554 83 47 1 12 94 48 126 8.95e-12 62.0
Msa0578730 AT1G24120.1 36.709 79 46 1 14 92 22 96 1.22e-11 62.0
Msa0578730 AT3G12170.1 32.026 153 77 6 12 146 11 154 1.39e-11 60.8
Msa0578730 AT3G12170.2 31.081 148 85 5 12 146 47 190 2.84e-11 60.5
Msa0578730 AT4G39960.1 45.455 66 31 1 13 78 86 146 3.11e-11 60.5
Msa0578730 AT4G39960.2 45.455 66 31 1 13 78 86 146 3.11e-11 60.5
Msa0578730 AT5G48030.1 45.455 66 32 1 13 78 95 156 3.16e-11 60.5
Msa0578730 AT4G10130.2 42.105 76 43 1 6 81 5 79 4.48e-11 58.5
Msa0578730 AT4G10130.4 42.105 76 43 1 6 81 5 79 4.48e-11 58.5
Msa0578730 AT4G10130.1 42.105 76 43 1 6 81 5 79 4.48e-11 58.5
Msa0578730 AT4G10130.3 42.105 76 43 1 6 81 5 79 4.48e-11 58.5
Msa0578730 AT4G10130.5 42.105 76 43 1 6 81 5 79 4.48e-11 58.5
Msa0578730 AT1G59980.2 37.975 79 45 1 14 92 25 99 4.70e-11 60.1
Msa0578730 AT1G59980.1 37.975 79 45 1 14 92 25 99 6.19e-11 59.7
Msa0578730 AT2G21510.3 45.588 68 33 1 11 78 5 68 6.91e-11 59.7
Msa0578730 AT2G21510.1 45.588 68 33 1 11 78 5 68 6.91e-11 59.7
Msa0578730 AT2G21510.5 45.588 68 33 1 11 78 5 68 7.27e-11 59.3
Msa0578730 AT2G21510.2 45.588 68 33 1 11 78 5 68 7.58e-11 59.3
Msa0578730 AT2G21510.4 45.588 68 33 1 11 78 5 68 7.58e-11 59.3

Find 47 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGCTAAAGTCGGTTAATT+AGG 0.232680 4_1:-83323123 None:intergenic
TTATTGCAGGAGAAGGTTTA+TGG 0.240463 4_1:+83325347 Msa0578730:intron
CAAGGAAAATAATAAATTTA+TGG 0.246173 4_1:-83323167 None:intergenic
GGAGAAGGTTTATGGTTTAG+AGG 0.283100 4_1:+83325355 Msa0578730:intron
ACCAAACTCAACAACTAAAA+AGG 0.283729 4_1:-83323298 None:intergenic
TCATCTTACTACAGTATTCT+TGG 0.298603 4_1:+83323390 Msa0578730:CDS
TAATAAATTTATGGAAGTTA+TGG 0.313874 4_1:-83323158 None:intergenic
ATGAGATAAGGCGTGCTTAT+AGG 0.318628 4_1:+83323436 Msa0578730:CDS
AACATACAAGAAGCTTATTC+AGG 0.364089 4_1:+83323639 Msa0578730:CDS
GGTGTTCTTGTCCACCTATC+TGG 0.379195 4_1:-83323582 None:intergenic
TTATGGTTTAGAGGAGTTGC+AGG 0.401445 4_1:+83325364 Msa0578730:CDS
CTCGCCTAACTTCAGCCATA+AGG 0.416208 4_1:-83323970 None:intergenic
CTGTAGTAAGATGACGATAA+TGG 0.435521 4_1:-83323381 None:intergenic
GGACGAAATGGTGTCCCTTA+TGG 0.441713 4_1:+83323955 Msa0578730:CDS
GGAGTTGCAGGACATGTTCA+TGG 0.460111 4_1:+83325376 Msa0578730:CDS
AGAGTCCTTCAATGTATTGT+GGG 0.465130 4_1:+83325417 Msa0578730:CDS
GTATTGTGGGACACCGTCTA+TGG 0.469755 4_1:+83325430 Msa0578730:CDS
ATTCTTCATTAGATGAGATA+AGG 0.473305 4_1:+83323424 Msa0578730:CDS
TCGCCTAACTTCAGCCATAA+GGG 0.480132 4_1:-83323969 None:intergenic
ACCTCATCTTCTTCCTCTTG+AGG 0.492857 4_1:-83323809 None:intergenic
TGCTTATAGGAAGCTTGCTA+TGG 0.497498 4_1:+83323449 Msa0578730:CDS
GAGAGTCCTTCAATGTATTG+TGG 0.499022 4_1:+83325416 Msa0578730:CDS
TGTCCCTTATGGCTGAAGTT+AGG 0.499106 4_1:+83323966 Msa0578730:CDS
CTAAAGTCGGTTAATTAGGA+AGG 0.501953 4_1:-83323119 None:intergenic
AAAAGAACTATGTACGATGC+TGG 0.511823 4_1:+83323776 Msa0578730:CDS
TATGTTCTGAAATTTACGCT+TGG 0.515893 4_1:-83323622 None:intergenic
TGCAGCAATGGCATCCAGAT+AGG 0.538770 4_1:+83323568 Msa0578730:intron
ACAATGGATGATTATAGTGA+AGG 0.543818 4_1:+83323357 Msa0578730:exon
AACACTTCCTCTCTTAGCAA+AGG 0.546362 4_1:-83325462 None:intergenic
ATTGACAAGGGAACGGAACA+AGG 0.559042 4_1:-83323185 None:intergenic
CAATGGATGATTATAGTGAA+GGG 0.570763 4_1:+83323358 Msa0578730:exon
ATATTTATTGAAGCTAAAGT+CGG 0.576457 4_1:-83323132 None:intergenic
TTGGCTTCACTCAATAAAGA+AGG 0.580558 4_1:-83323603 None:intergenic
GCAGGACATGTTCATGGAGA+TGG 0.589641 4_1:+83325382 Msa0578730:CDS
ATGTTCATGGAGATGGCTGA+AGG 0.590061 4_1:+83325389 Msa0578730:CDS
GGTGTCCCACAATACATTGA+AGG 0.591958 4_1:-83325422 None:intergenic
TCCTCAAGAGGAAGAAGATG+AGG 0.607948 4_1:+83323808 Msa0578730:CDS
GATGAATCCTTTGCTAAGAG+AGG 0.608489 4_1:+83325455 Msa0578730:CDS
TAAAGTCGGTTAATTAGGAA+GGG 0.610354 4_1:-83323118 None:intergenic
AAGGATTCATCAACCATAGA+CGG 0.618990 4_1:-83325443 None:intergenic
ATGGTTTAAACGAGTTACAA+TGG 0.625435 4_1:+83323341 Msa0578730:exon
GATTGCATGCATAATTGACA+AGG 0.653903 4_1:-83323198 None:intergenic
TGGCTTGTATGATCCTCAAG+AGG 0.660837 4_1:+83323796 Msa0578730:CDS
ATGCATAATTGACAAGGGAA+CGG 0.667700 4_1:-83323192 None:intergenic
TATGGCTGAAGTTAGGCGAG+AGG 0.677695 4_1:+83323973 Msa0578730:CDS
AGCAATGGCATCCAGATAGG+TGG 0.677774 4_1:+83323571 Msa0578730:intron
ATTGCATGCATAATTGACAA+GGG 0.759001 4_1:-83323197 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAAATTTATGGAAGTTA+TGG - chr4_1:83323161-83323180 None:intergenic 15.0%
!! CAAGGAAAATAATAAATTTA+TGG - chr4_1:83323170-83323189 None:intergenic 15.0%
!!! TTTTGTTTATTAGTTTGTTA+TGG + chr4_1:83323884-83323903 Msa0578730:intron 15.0%
!!! AAGTGTTCATTTAAATTTTA+CGG + chr4_1:83324258-83324277 Msa0578730:intron 15.0%
!!! AAGTGTTCATTTAAATTTTA+CGG + chr4_1:83324258-83324277 Msa0578730:intron 15.0%
!!! TGATAGATATTTTTTATTGA+AGG + chr4_1:83325133-83325152 Msa0578730:intron 15.0%
!!! GATAGATATTTTTTATTGAA+GGG + chr4_1:83325134-83325153 Msa0578730:intron 15.0%
!! CAATAAGATATATACATATA+TGG - chr4_1:83325333-83325352 None:intergenic 15.0%
!! ATATTTATTGAAGCTAAAGT+CGG - chr4_1:83323135-83323154 None:intergenic 20.0%
!!! TGTGAATTTTTGTATCATTT+TGG + chr4_1:83323682-83323701 Msa0578730:intron 20.0%
!!! AATTTTTGTATCATTTTGGT+GGG + chr4_1:83323686-83323705 Msa0578730:intron 20.0%
!!! ACATGTTTGTTTCTAATTTT+AGG + chr4_1:83323916-83323935 Msa0578730:intron 20.0%
!! AATGAATGTTGAAAATTTGA+AGG + chr4_1:83324224-83324243 Msa0578730:intron 20.0%
!! AATGAATGTTGAAAATTTGA+AGG + chr4_1:83324224-83324243 Msa0578730:intron 20.0%
!!! GAAAAGATTAGTAAATGTTT+TGG + chr4_1:83324510-83324529 Msa0578730:intron 20.0%
!! CATTTATCTTGTAAATGTAA+AGG - chr4_1:83325053-83325072 None:intergenic 20.0%
!! CTTTACATTTACAAGATAAA+TGG + chr4_1:83325051-83325070 Msa0578730:intron 20.0%
!! AAAAAAAAAAAAAAAGACCC+AGG + chr4_1:83325204-83325223 Msa0578730:intron 20.0%
!!! GTCTTGAATTTTTAACATAA+AGG + chr4_1:83325261-83325280 Msa0578730:intron 20.0%
!! ATATGTATATATCTTATTGC+AGG + chr4_1:83325334-83325353 Msa0578730:intron 20.0%
!! AAATGAGACAAGTATGTTTT+TGG - chr4_1:83323257-83323276 None:intergenic 25.0%
!!! CATATTTTATTTCTAGTGCA+TGG + chr4_1:83323322-83323341 Msa0578730:five_prime_UTR 25.0%
! ATTCTTCATTAGATGAGATA+AGG + chr4_1:83323424-83323443 Msa0578730:CDS 25.0%
! CAATGCAAATGACAAAAAAA+GGG - chr4_1:83323491-83323510 None:intergenic 25.0%
! ACAATGCAAATGACAAAAAA+AGG - chr4_1:83323492-83323511 None:intergenic 25.0%
!! GAATTTTTGTATCATTTTGG+TGG + chr4_1:83323685-83323704 Msa0578730:intron 25.0%
!!! GTTTTCTGTTTTGTTTTGTT+TGG + chr4_1:83323731-83323750 Msa0578730:intron 25.0%
! ACAATCTTCAAGAAAAACTA+AGG - chr4_1:83323859-83323878 None:intergenic 25.0%
!! TTAGGATTTTTCTGATTTTG+TGG + chr4_1:83323934-83323953 Msa0578730:intron 25.0%
!! CAAGATCAAACTTTTCTAAT+AGG - chr4_1:83324020-83324039 None:intergenic 25.0%
! CTATTAGAAAAGTTTGATCT+TGG + chr4_1:83324018-83324037 Msa0578730:intron 25.0%
! TTAATGAGATTTCATGACTA+TGG + chr4_1:83324063-83324082 Msa0578730:intron 25.0%
! TAATGAGATTTCATGACTAT+GGG + chr4_1:83324064-83324083 Msa0578730:intron 25.0%
!! AATTCAAAATTTTGCACCTT+AGG - chr4_1:83324099-83324118 None:intergenic 25.0%
!!! TCACTTTTTAGATTTGGTTT+GGG - chr4_1:83324141-83324160 None:intergenic 25.0%
!!! ATTCACTCACTTTTTAGATT+TGG - chr4_1:83324147-83324166 None:intergenic 25.0%
! AAAGATAGAGATAAAACACA+TGG + chr4_1:83324188-83324207 Msa0578730:intron 25.0%
! AAAGATAGAGATAAAACACA+TGG + chr4_1:83324188-83324207 Msa0578730:intron 25.0%
!! GTTCATTTAAATTTTACGGA+AGG + chr4_1:83324262-83324281 Msa0578730:intron 25.0%
!! GAAAAGATTAGTAACAGTTT+TGG + chr4_1:83324462-83324481 Msa0578730:intron 25.0%
! AATGAAAATGAATGAGTAGA+TGG + chr4_1:83324547-83324566 Msa0578730:intron 25.0%
! TTAATAAGACAACTCAGTAA+AGG + chr4_1:83324570-83324589 Msa0578730:intron 25.0%
! TAATAAGACAACTCAGTAAA+GGG + chr4_1:83324571-83324590 Msa0578730:intron 25.0%
!! GGAAAGATTAGTAAATGTTT+TGG + chr4_1:83324595-83324614 Msa0578730:intron 25.0%
! AATGAAAATGAATGAGTAGA+TGG + chr4_1:83324547-83324566 Msa0578730:intron 25.0%
! CTAACTCAATCTTACAAAAA+CGG + chr4_1:83324942-83324961 Msa0578730:intron 25.0%
TAAAGTCGGTTAATTAGGAA+GGG - chr4_1:83323121-83323140 None:intergenic 30.0%
ATTGCATGCATAATTGACAA+GGG - chr4_1:83323200-83323219 None:intergenic 30.0%
CAACAACTAAAAAGGAATCA+AGG - chr4_1:83323293-83323312 None:intergenic 30.0%
!!! TCCTTTTTAGTTGTTGAGTT+TGG + chr4_1:83323297-83323316 Msa0578730:five_prime_UTR 30.0%
ACCAAACTCAACAACTAAAA+AGG - chr4_1:83323301-83323320 None:intergenic 30.0%
ATGGTTTAAACGAGTTACAA+TGG + chr4_1:83323341-83323360 Msa0578730:exon 30.0%
ACAATGGATGATTATAGTGA+AGG + chr4_1:83323357-83323376 Msa0578730:exon 30.0%
CAATGGATGATTATAGTGAA+GGG + chr4_1:83323358-83323377 Msa0578730:exon 30.0%
TCATCTTACTACAGTATTCT+TGG + chr4_1:83323390-83323409 Msa0578730:CDS 30.0%
!! TGAATTTTGATCTGAATGTG+AGG + chr4_1:83323522-83323541 Msa0578730:intron 30.0%
!! TATGTTCTGAAATTTACGCT+TGG - chr4_1:83323625-83323644 None:intergenic 30.0%
AACATACAAGAAGCTTATTC+AGG + chr4_1:83323639-83323658 Msa0578730:CDS 30.0%
! TCGTACATAGTTCTTTTCTT+GGG - chr4_1:83323773-83323792 None:intergenic 30.0%
! ATCGTACATAGTTCTTTTCT+TGG - chr4_1:83323774-83323793 None:intergenic 30.0%
! CAAACTTTTCTAATAGGAAG+TGG - chr4_1:83324014-83324033 None:intergenic 30.0%
!!! CTCACTTTTTAGATTTGGTT+TGG - chr4_1:83324142-83324161 None:intergenic 30.0%
TGAAAAGACAACTCAGTAAA+GGG + chr4_1:83324438-83324457 Msa0578730:intron 30.0%
ATCAAAAGACAACTCAGTAA+AGG + chr4_1:83324485-83324504 Msa0578730:intron 30.0%
TCAAAAGACAACTCAGTAAA+GGG + chr4_1:83324486-83324505 Msa0578730:intron 30.0%
AATCTTAGACTTAGAAATCG+TGG + chr4_1:83324679-83324698 Msa0578730:intron 30.0%
! CGTTTTTGTAAGATTGAGTT+AGG - chr4_1:83324944-83324963 None:intergenic 30.0%
TTAAAAGTCTCACATCAGAT+AGG - chr4_1:83325017-83325036 None:intergenic 30.0%
ATATATCTTATTGCAGGAGA+AGG + chr4_1:83325340-83325359 Msa0578730:intron 30.0%
CTAAAGTCGGTTAATTAGGA+AGG - chr4_1:83323122-83323141 None:intergenic 35.0%
GAAGCTAAAGTCGGTTAATT+AGG - chr4_1:83323126-83323145 None:intergenic 35.0%
ATGCATAATTGACAAGGGAA+CGG - chr4_1:83323195-83323214 None:intergenic 35.0%
GATTGCATGCATAATTGACA+AGG - chr4_1:83323201-83323220 None:intergenic 35.0%
CTGTAGTAAGATGACGATAA+TGG - chr4_1:83323384-83323403 None:intergenic 35.0%
AATTTCAATGCATGCAGCAA+TGG + chr4_1:83323556-83323575 Msa0578730:intron 35.0%
TTGGCTTCACTCAATAAAGA+AGG - chr4_1:83323606-83323625 None:intergenic 35.0%
AAAAGAACTATGTACGATGC+TGG + chr4_1:83323776-83323795 Msa0578730:CDS 35.0%
! TTCTGATTTTGTGGACGAAA+TGG + chr4_1:83323943-83323962 Msa0578730:CDS 35.0%
CTATGGGTACTTATATCCTA+AGG + chr4_1:83324080-83324099 Msa0578730:intron 35.0%
GAAGGTAACAACTCAGTAAA+GGG + chr4_1:83324415-83324434 Msa0578730:intron 35.0%
GTGAAAAGACAACTCAGTAA+AGG + chr4_1:83324437-83324456 Msa0578730:intron 35.0%
TTAGACTTAGAAATCGTGGT+TGG + chr4_1:83324683-83324702 Msa0578730:intron 35.0%
!!! TAAGCTGGTTTTGTTGAGTT+GGG - chr4_1:83324715-83324734 None:intergenic 35.0%
!!! ATAAGCTGGTTTTGTTGAGT+TGG - chr4_1:83324716-83324735 None:intergenic 35.0%
AGCGAAAACTTAATAGCAGA+TGG + chr4_1:83324866-83324885 Msa0578730:intron 35.0%
CTTAATAGCAGATGGTCTAA+CGG + chr4_1:83324874-83324893 Msa0578730:intron 35.0%
TGATACCATCTTAGAAATCG+TGG + chr4_1:83324913-83324932 Msa0578730:intron 35.0%
AAACTGTGCTGCAAGTTTAA+AGG - chr4_1:83325098-83325117 None:intergenic 35.0%
TTATTGCAGGAGAAGGTTTA+TGG + chr4_1:83325347-83325366 Msa0578730:intron 35.0%
AGAGTCCTTCAATGTATTGT+GGG + chr4_1:83325417-83325436 Msa0578730:CDS 35.0%
AAGGATTCATCAACCATAGA+CGG - chr4_1:83325446-83325465 None:intergenic 35.0%
ATGAGATAAGGCGTGCTTAT+AGG + chr4_1:83323436-83323455 Msa0578730:CDS 40.0%
!! TGCTTATAGGAAGCTTGCTA+TGG + chr4_1:83323449-83323468 Msa0578730:CDS 40.0%
GGAAGGTAACAACTCAGTAA+AGG + chr4_1:83324414-83324433 Msa0578730:intron 40.0%
TAAGACAACTCAGTAAAGGG+TGG + chr4_1:83324574-83324593 Msa0578730:intron 40.0%
CTCAACAAAACCAGCTTATG+AGG + chr4_1:83324717-83324736 Msa0578730:intron 40.0%
AACAAAACCAGCTTATGAGG+TGG + chr4_1:83324720-83324739 Msa0578730:intron 40.0%
ACAAAACCAGCTTATGAGGT+GGG + chr4_1:83324721-83324740 Msa0578730:intron 40.0%
TAAAGAGTCCCACATCGAAT+AGG - chr4_1:83324784-83324803 None:intergenic 40.0%
ATATGGGGCATGGACATAAA+TGG + chr4_1:83324830-83324849 Msa0578730:intron 40.0%
ACCATCTTAGAAATCGTGGT+TGG + chr4_1:83324917-83324936 Msa0578730:intron 40.0%
CCATCTTAGAAATCGTGGTT+GGG + chr4_1:83324918-83324937 Msa0578730:intron 40.0%
ACAGACATTCTTAGGGGTTT+AGG + chr4_1:83325229-83325248 Msa0578730:intron 40.0%
GGAGAAGGTTTATGGTTTAG+AGG + chr4_1:83325355-83325374 Msa0578730:intron 40.0%
TTATGGTTTAGAGGAGTTGC+AGG + chr4_1:83325364-83325383 Msa0578730:CDS 40.0%
GAGAGTCCTTCAATGTATTG+TGG + chr4_1:83325416-83325435 Msa0578730:CDS 40.0%
GATGAATCCTTTGCTAAGAG+AGG + chr4_1:83325455-83325474 Msa0578730:CDS 40.0%
AACACTTCCTCTCTTAGCAA+AGG - chr4_1:83325465-83325484 None:intergenic 40.0%
ATTGACAAGGGAACGGAACA+AGG - chr4_1:83323188-83323207 None:intergenic 45.0%
! TGGCTTGTATGATCCTCAAG+AGG + chr4_1:83323796-83323815 Msa0578730:CDS 45.0%
TCCTCAAGAGGAAGAAGATG+AGG + chr4_1:83323808-83323827 Msa0578730:CDS 45.0%
ACCTCATCTTCTTCCTCTTG+AGG - chr4_1:83323812-83323831 None:intergenic 45.0%
TGTCCCTTATGGCTGAAGTT+AGG + chr4_1:83323966-83323985 Msa0578730:CDS 45.0%
TCGCCTAACTTCAGCCATAA+GGG - chr4_1:83323972-83323991 None:intergenic 45.0%
CAAAACCAGCTTATGAGGTG+GGG + chr4_1:83324722-83324741 Msa0578730:intron 45.0%
AGACCATCTCCTATTCGATG+TGG + chr4_1:83324772-83324791 Msa0578730:intron 45.0%
GACCATCTCCTATTCGATGT+GGG + chr4_1:83324773-83324792 Msa0578730:intron 45.0%
!! ATGTCTAGTCTTGGACGCAA+GGG - chr4_1:83324812-83324831 None:intergenic 45.0%
!! TATGTCTAGTCTTGGACGCA+AGG - chr4_1:83324813-83324832 None:intergenic 45.0%
TGCGTCCAAGACTAGACATA+TGG + chr4_1:83324813-83324832 Msa0578730:intron 45.0%
GCGTCCAAGACTAGACATAT+GGG + chr4_1:83324814-83324833 Msa0578730:intron 45.0%
CGTCCAAGACTAGACATATG+GGG + chr4_1:83324815-83324834 Msa0578730:intron 45.0%
ATGCCCCATATGTCTAGTCT+TGG - chr4_1:83324821-83324840 None:intergenic 45.0%
AAGACTAGACATATGGGGCA+TGG + chr4_1:83324820-83324839 Msa0578730:intron 45.0%
! GATGGTCTAACGGATCTTAG+AGG + chr4_1:83324884-83324903 Msa0578730:intron 45.0%
! CCCAACCACGATTTCTAAGA+TGG - chr4_1:83324921-83324940 None:intergenic 45.0%
CAAAAACGGTTTGTGAGACG+AGG + chr4_1:83324956-83324975 Msa0578730:intron 45.0%
CCTAAGAATGTCTGTGACCT+GGG - chr4_1:83325224-83325243 None:intergenic 45.0%
CCAGGTCACAGACATTCTTA+GGG + chr4_1:83325222-83325241 Msa0578730:intron 45.0%
CAGGTCACAGACATTCTTAG+GGG + chr4_1:83325223-83325242 Msa0578730:intron 45.0%
ATGTTCATGGAGATGGCTGA+AGG + chr4_1:83325389-83325408 Msa0578730:CDS 45.0%
GGTGTCCCACAATACATTGA+AGG - chr4_1:83325425-83325444 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTTTTG+TGG - chr4_1:83325199-83325218 None:intergenic 5.0%
TGCAGCAATGGCATCCAGAT+AGG + chr4_1:83323568-83323587 Msa0578730:intron 50.0%
AGCAATGGCATCCAGATAGG+TGG + chr4_1:83323571-83323590 Msa0578730:intron 50.0%
GGTGTTCTTGTCCACCTATC+TGG - chr4_1:83323585-83323604 None:intergenic 50.0%
GGACGAAATGGTGTCCCTTA+TGG + chr4_1:83323955-83323974 Msa0578730:CDS 50.0%
CTCGCCTAACTTCAGCCATA+AGG - chr4_1:83323973-83323992 None:intergenic 50.0%
TATGGCTGAAGTTAGGCGAG+AGG + chr4_1:83323973-83323992 Msa0578730:CDS 50.0%
ACAATCCCCACCTCATAAGC+TGG - chr4_1:83324730-83324749 None:intergenic 50.0%
GTCCCACATCGAATAGGAGA+TGG - chr4_1:83324778-83324797 None:intergenic 50.0%
!! TGTCTAGTCTTGGACGCAAG+GGG - chr4_1:83324811-83324830 None:intergenic 50.0%
TGGGGCATGGACATAAATGG+TGG + chr4_1:83324833-83324852 Msa0578730:intron 50.0%
GGGGCATGGACATAAATGGT+GGG + chr4_1:83324834-83324853 Msa0578730:intron 50.0%
! GCATGGACATAAATGGTGGG+TGG + chr4_1:83324837-83324856 Msa0578730:intron 50.0%
CCCAGGTCACAGACATTCTT+AGG + chr4_1:83325221-83325240 Msa0578730:intron 50.0%
CCCTAAGAATGTCTGTGACC+TGG - chr4_1:83325225-83325244 None:intergenic 50.0%
GGAGTTGCAGGACATGTTCA+TGG + chr4_1:83325376-83325395 Msa0578730:CDS 50.0%
GCAGGACATGTTCATGGAGA+TGG + chr4_1:83325382-83325401 Msa0578730:CDS 50.0%
GTATTGTGGGACACCGTCTA+TGG + chr4_1:83325430-83325449 Msa0578730:CDS 50.0%
!! GTCTAGTCTTGGACGCAAGG+GGG - chr4_1:83324810-83324829 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 83323110 83325496 83323110 ID=Msa0578730;Name=Msa0578730
chr4_1 mRNA 83323110 83325496 83323110 ID=Msa0578730-mRNA-1;Parent=Msa0578730;Name=Msa0578730-mRNA-1;_AED=0.15;_eAED=0.15;_QI=250|1|0.8|1|1|1|5|0|155
chr4_1 exon 83323110 83323470 83323110 ID=Msa0578730-mRNA-1:exon:30356;Parent=Msa0578730-mRNA-1
chr4_1 exon 83323573 83323660 83323573 ID=Msa0578730-mRNA-1:exon:30357;Parent=Msa0578730-mRNA-1
chr4_1 exon 83323759 83323829 83323759 ID=Msa0578730-mRNA-1:exon:30358;Parent=Msa0578730-mRNA-1
chr4_1 exon 83323938 83323994 83323938 ID=Msa0578730-mRNA-1:exon:30359;Parent=Msa0578730-mRNA-1
chr4_1 exon 83325356 83325496 83325356 ID=Msa0578730-mRNA-1:exon:30360;Parent=Msa0578730-mRNA-1
chr4_1 five_prime_UTR 83323110 83323359 83323110 ID=Msa0578730-mRNA-1:five_prime_utr;Parent=Msa0578730-mRNA-1
chr4_1 CDS 83323360 83323470 83323360 ID=Msa0578730-mRNA-1:cds;Parent=Msa0578730-mRNA-1
chr4_1 CDS 83323573 83323660 83323573 ID=Msa0578730-mRNA-1:cds;Parent=Msa0578730-mRNA-1
chr4_1 CDS 83323759 83323829 83323759 ID=Msa0578730-mRNA-1:cds;Parent=Msa0578730-mRNA-1
chr4_1 CDS 83323938 83323994 83323938 ID=Msa0578730-mRNA-1:cds;Parent=Msa0578730-mRNA-1
chr4_1 CDS 83325356 83325496 83325356 ID=Msa0578730-mRNA-1:cds;Parent=Msa0578730-mRNA-1
Gene Sequence

>Msa0578730

ATGGATGATTATAGTGAAGGGCCATTATCGTCATCTTACTACAGTATTCTTGGTGTTAGTTCTGATTCTTCATTAGATGAGATAAGGCGTGCTTATAGGAAGCTTGCTATGCAATGGCATCCAGATAGGTGGACAAGAACACCTTCTTTATTGAGTGAAGCCAAGCGTAAATTTCAGAACATACAAGAAGCTTATTCAGTGCTATCTGATCCCAAGAAAAGAACTATGTACGATGCTGGCTTGTATGATCCTCAAGAGGAAGAAGATGAGGATTTTTCTGATTTTGTGGACGAAATGGTGTCCCTTATGGCTGAAGTTAGGCGAGAGGAGAAGGTTTATGGTTTAGAGGAGTTGCAGGACATGTTCATGGAGATGGCTGAAGGATTTGAGAGTCCTTCAATGTATTGTGGGACACCGTCTATGGTTGATGAATCCTTTGCTAAGAGAGGAAGTGTTTTGACACGATAA

Protein sequence

>Msa0578730

MDDYSEGPLSSSYYSILGVSSDSSLDEIRRAYRKLAMQWHPDRWTRTPSLLSEAKRKFQNIQEAYSVLSDPKKRTMYDAGLYDPQEEEDEDFSDFVDEMVSLMAEVRREEKVYGLEELQDMFMEMAEGFESPSMYCGTPSMVDESFAKRGSVLTR*