Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1039820 | XP_024625358.1 | 85.638 | 188 | 3 | 1 | 12 | 199 | 1 | 164 | 1.18e-110 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1039820 | sp|Q9QYI7|DNJB8_MOUSE | 60.606 | 66 | 23 | 1 | 28 | 93 | 4 | 66 | 9.21e-21 | 89.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1039820 | G7KWI3 | 85.638 | 188 | 3 | 1 | 12 | 199 | 1 | 164 | 5.62e-111 | 323 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001810 | Msa1039820 | 0.886113 | 4.536966e-72 | -8.615850e-47 |
| Msa0074100 | Msa1039820 | 0.822587 | 2.186716e-53 | -8.615850e-47 |
| Msa0610960 | Msa1039820 | 0.807607 | 4.653054e-50 | -8.615850e-47 |
| Msa0610970 | Msa1039820 | 0.810157 | 1.325128e-50 | -8.615850e-47 |
| Msa0213980 | Msa1039820 | 0.857052 | 2.122117e-62 | -8.615850e-47 |
| Msa0376700 | Msa1039820 | 0.873062 | 1.966523e-67 | -8.615850e-47 |
| Msa0387830 | Msa1039820 | 0.811904 | 5.542723e-51 | -8.615850e-47 |
| Msa0425830 | Msa1039820 | 0.856754 | 2.597650e-62 | -8.615850e-47 |
| Msa0438470 | Msa1039820 | 0.814649 | 1.383696e-51 | -8.615850e-47 |
| Msa0472290 | Msa1039820 | 0.820898 | 5.376123e-53 | -8.615850e-47 |
| Msa1039820 | Msa1084030 | 0.897576 | 1.229499e-76 | -8.615850e-47 |
| Msa1039820 | Msa1128260 | 0.951033 | 4.782167e-109 | -8.615850e-47 |
| Msa1039820 | Msa1212190 | 0.816973 | 4.196303e-52 | -8.615850e-47 |
| Msa1039820 | Msa1212270 | 0.811072 | 8.406254e-51 | -8.615850e-47 |
| Msa1039820 | Msa1259910 | 0.808341 | 3.247877e-50 | -8.615850e-47 |
| Msa1039820 | Msa1411850 | 0.866768 | 2.238758e-65 | -8.615850e-47 |
| Msa0254340 | Msa1039820 | 0.854963 | 8.673061e-62 | -8.615850e-47 |
| Msa0332410 | Msa1039820 | 0.863506 | 2.371923e-64 | -8.615850e-47 |
| Msa0512350 | Msa1039820 | 0.808159 | 3.551262e-50 | -8.615850e-47 |
| Msa0574910 | Msa1039820 | 0.865231 | 6.861225e-65 | -8.615850e-47 |
| Msa0930760 | Msa1039820 | 0.886375 | 3.613719e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1039820 | MtrunA17_Chr7g0271891 | 85.638 | 188 | 3 | 1 | 12 | 199 | 1 | 164 | 1.08e-114 | 323 |
| Msa1039820 | MtrunA17_Chr4g0044331 | 49.630 | 135 | 42 | 2 | 33 | 165 | 18 | 128 | 1.52e-36 | 125 |
| Msa1039820 | MtrunA17_Chr8g0344721 | 39.490 | 157 | 64 | 5 | 19 | 169 | 2 | 133 | 5.05e-29 | 107 |
| Msa1039820 | MtrunA17_Chr3g0138471 | 53.030 | 66 | 28 | 1 | 28 | 93 | 5 | 67 | 1.60e-18 | 81.6 |
| Msa1039820 | MtrunA17_Chr2g0324921 | 53.030 | 66 | 28 | 1 | 28 | 93 | 5 | 67 | 1.91e-17 | 79.0 |
| Msa1039820 | MtrunA17_Chr4g0040501 | 48.485 | 66 | 31 | 1 | 28 | 93 | 5 | 67 | 8.83e-17 | 77.0 |
| Msa1039820 | MtrunA17_Chr2g0282741 | 46.970 | 66 | 32 | 1 | 28 | 93 | 5 | 67 | 1.24e-16 | 76.6 |
| Msa1039820 | MtrunA17_Chr4g0006391 | 53.030 | 66 | 28 | 1 | 28 | 93 | 5 | 67 | 1.66e-16 | 76.3 |
| Msa1039820 | MtrunA17_Chr4g0021141 | 45.946 | 74 | 36 | 1 | 20 | 93 | 15 | 84 | 3.46e-16 | 72.0 |
| Msa1039820 | MtrunA17_Chr1g0209551 | 40.000 | 90 | 50 | 1 | 12 | 101 | 1 | 86 | 7.07e-16 | 75.1 |
| Msa1039820 | MtrunA17_Chr2g0282761 | 48.485 | 66 | 31 | 1 | 28 | 93 | 5 | 67 | 8.24e-16 | 74.3 |
| Msa1039820 | MtrunA17_Chr4g0061421 | 45.588 | 68 | 37 | 0 | 27 | 94 | 8 | 75 | 9.89e-16 | 74.7 |
| Msa1039820 | MtrunA17_Chr5g0415731 | 44.286 | 70 | 35 | 1 | 28 | 93 | 6 | 75 | 1.08e-15 | 70.9 |
| Msa1039820 | MtrunA17_Chr7g0263971 | 48.529 | 68 | 32 | 1 | 28 | 95 | 370 | 434 | 9.63e-15 | 72.0 |
| Msa1039820 | MtrunA17_Chr1g0173931 | 41.379 | 87 | 47 | 2 | 7 | 93 | 18 | 100 | 3.60e-14 | 69.3 |
| Msa1039820 | MtrunA17_Chr3g0123861 | 50.000 | 66 | 28 | 2 | 28 | 93 | 83 | 143 | 3.78e-14 | 70.1 |
| Msa1039820 | MtrunA17_Chr6g0460461 | 44.776 | 67 | 36 | 1 | 28 | 93 | 3 | 69 | 6.18e-14 | 67.8 |
| Msa1039820 | MtrunA17_Chr7g0258061 | 50.769 | 65 | 28 | 2 | 29 | 93 | 24 | 84 | 1.04e-13 | 67.8 |
| Msa1039820 | MtrunA17_Chr7g0269841 | 48.485 | 66 | 30 | 2 | 28 | 93 | 27 | 88 | 4.54e-13 | 66.6 |
| Msa1039820 | MtrunA17_Chr8g0378161 | 33.065 | 124 | 70 | 2 | 28 | 151 | 61 | 171 | 5.27e-13 | 64.7 |
| Msa1039820 | MtrunA17_Chr6g0478651 | 46.970 | 66 | 30 | 2 | 28 | 93 | 69 | 129 | 7.15e-13 | 66.6 |
| Msa1039820 | MtrunA17_Chr4g0010781 | 48.485 | 66 | 30 | 1 | 28 | 93 | 87 | 148 | 1.61e-12 | 65.5 |
| Msa1039820 | MtrunA17_Chr6g0460381 | 43.284 | 67 | 37 | 1 | 28 | 93 | 4 | 70 | 1.88e-12 | 63.2 |
| Msa1039820 | MtrunA17_Chr3g0087741 | 46.970 | 66 | 31 | 1 | 28 | 93 | 90 | 151 | 2.30e-12 | 64.7 |
| Msa1039820 | MtrunA17_Chr5g0427221 | 43.836 | 73 | 37 | 1 | 23 | 95 | 44 | 112 | 2.49e-12 | 62.0 |
| Msa1039820 | MtrunA17_Chr2g0333221 | 46.377 | 69 | 32 | 2 | 25 | 93 | 68 | 131 | 2.96e-12 | 64.7 |
| Msa1039820 | MtrunA17_Chr6g0460411 | 43.284 | 67 | 37 | 1 | 28 | 93 | 3 | 69 | 3.43e-12 | 63.2 |
| Msa1039820 | MtrunA17_Chr5g0426951 | 43.939 | 66 | 33 | 1 | 28 | 93 | 84 | 145 | 6.39e-12 | 63.5 |
| Msa1039820 | MtrunA17_Chr8g0334811 | 39.080 | 87 | 45 | 1 | 16 | 102 | 3 | 81 | 1.30e-11 | 62.8 |
| Msa1039820 | MtrunA17_Chr5g0414471 | 36.782 | 87 | 46 | 2 | 29 | 110 | 27 | 109 | 1.65e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1039820 | AT1G56300.1 | 60.656 | 183 | 45 | 3 | 12 | 194 | 1 | 156 | 8.11e-66 | 199 |
| Msa1039820 | AT1G56300.2 | 61.654 | 133 | 24 | 3 | 15 | 147 | 4 | 109 | 4.01e-47 | 151 |
| Msa1039820 | AT1G71000.1 | 44.311 | 167 | 53 | 4 | 21 | 174 | 3 | 142 | 1.67e-35 | 123 |
| Msa1039820 | AT1G71000.2 | 38.251 | 183 | 80 | 4 | 21 | 198 | 3 | 157 | 1.90e-33 | 117 |
| Msa1039820 | AT3G14200.1 | 41.781 | 146 | 57 | 4 | 29 | 170 | 14 | 135 | 2.78e-29 | 108 |
| Msa1039820 | AT1G72416.1 | 33.607 | 122 | 55 | 2 | 29 | 150 | 7 | 102 | 1.35e-18 | 79.7 |
| Msa1039820 | AT1G72416.2 | 33.607 | 122 | 55 | 2 | 29 | 150 | 7 | 102 | 1.55e-18 | 79.7 |
| Msa1039820 | AT5G25530.2 | 53.030 | 66 | 28 | 1 | 28 | 93 | 5 | 67 | 2.22e-18 | 82.0 |
| Msa1039820 | AT1G72416.3 | 33.607 | 122 | 55 | 2 | 29 | 150 | 7 | 102 | 2.88e-18 | 79.3 |
| Msa1039820 | AT1G72416.4 | 45.333 | 75 | 40 | 1 | 29 | 103 | 7 | 80 | 8.21e-18 | 77.8 |
| Msa1039820 | AT1G10350.1 | 50.000 | 66 | 30 | 1 | 28 | 93 | 5 | 67 | 3.62e-17 | 78.6 |
| Msa1039820 | AT3G08910.1 | 53.030 | 66 | 28 | 1 | 28 | 93 | 5 | 67 | 4.71e-17 | 78.2 |
| Msa1039820 | AT4G28480.2 | 53.030 | 66 | 28 | 1 | 28 | 93 | 5 | 67 | 5.51e-17 | 77.4 |
| Msa1039820 | AT4G28480.1 | 53.030 | 66 | 28 | 1 | 28 | 93 | 5 | 67 | 8.34e-17 | 77.8 |
| Msa1039820 | AT1G59725.1 | 52.239 | 67 | 28 | 2 | 28 | 93 | 5 | 68 | 9.35e-17 | 77.4 |
| Msa1039820 | AT2G20560.1 | 53.030 | 66 | 28 | 1 | 28 | 93 | 5 | 67 | 2.04e-16 | 76.6 |
| Msa1039820 | AT5G01390.3 | 50.000 | 66 | 30 | 1 | 28 | 93 | 5 | 67 | 4.83e-16 | 74.3 |
| Msa1039820 | AT5G06910.1 | 45.055 | 91 | 41 | 2 | 3 | 93 | 10 | 91 | 5.43e-16 | 74.7 |
| Msa1039820 | AT5G01390.2 | 50.000 | 66 | 30 | 1 | 28 | 93 | 5 | 67 | 6.94e-16 | 74.3 |
| Msa1039820 | AT5G01390.4 | 50.000 | 66 | 30 | 1 | 28 | 93 | 5 | 67 | 9.29e-16 | 73.2 |
| Msa1039820 | AT5G25530.1 | 47.297 | 74 | 28 | 2 | 28 | 93 | 5 | 75 | 1.04e-15 | 74.7 |
| Msa1039820 | AT5G01390.1 | 50.000 | 66 | 30 | 1 | 28 | 93 | 5 | 67 | 1.49e-15 | 73.9 |
| Msa1039820 | AT3G47940.1 | 49.254 | 67 | 30 | 2 | 28 | 93 | 5 | 68 | 6.43e-15 | 72.4 |
| Msa1039820 | AT5G16650.1 | 43.750 | 80 | 40 | 2 | 20 | 98 | 4 | 79 | 3.27e-14 | 67.0 |
| Msa1039820 | AT2G41000.1 | 43.478 | 69 | 38 | 1 | 28 | 95 | 4 | 72 | 4.34e-14 | 67.8 |
| Msa1039820 | AT5G03160.1 | 45.205 | 73 | 37 | 1 | 23 | 95 | 366 | 435 | 6.39e-14 | 69.7 |
| Msa1039820 | AT2G41000.2 | 43.478 | 69 | 38 | 1 | 28 | 95 | 4 | 72 | 6.62e-14 | 67.8 |
| Msa1039820 | AT2G22360.1 | 48.485 | 66 | 29 | 2 | 28 | 93 | 87 | 147 | 8.88e-14 | 69.3 |
| Msa1039820 | AT5G16650.2 | 43.750 | 80 | 40 | 2 | 20 | 98 | 4 | 79 | 1.02e-13 | 66.6 |
| Msa1039820 | AT3G12170.1 | 44.000 | 75 | 38 | 1 | 19 | 93 | 3 | 73 | 1.34e-13 | 67.8 |
| Msa1039820 | AT1G74250.1 | 41.026 | 78 | 45 | 1 | 18 | 94 | 2 | 79 | 2.08e-13 | 68.6 |
| Msa1039820 | AT2G33735.1 | 46.970 | 66 | 31 | 1 | 28 | 93 | 23 | 84 | 2.47e-13 | 64.3 |
| Msa1039820 | AT2G33735.2 | 46.970 | 66 | 31 | 1 | 28 | 93 | 23 | 84 | 2.47e-13 | 64.3 |
| Msa1039820 | AT1G68370.1 | 42.466 | 73 | 38 | 1 | 29 | 101 | 19 | 87 | 4.06e-13 | 67.4 |
| Msa1039820 | AT1G24120.1 | 36.782 | 87 | 46 | 2 | 29 | 110 | 22 | 104 | 4.55e-13 | 67.4 |
| Msa1039820 | AT3G12170.2 | 44.000 | 75 | 38 | 1 | 19 | 93 | 39 | 109 | 5.66e-13 | 66.6 |
| Msa1039820 | AT4G39960.1 | 48.485 | 66 | 29 | 2 | 28 | 93 | 86 | 146 | 1.35e-12 | 65.9 |
| Msa1039820 | AT4G39960.2 | 48.485 | 66 | 29 | 2 | 28 | 93 | 86 | 146 | 1.35e-12 | 65.9 |
| Msa1039820 | AT3G62600.1 | 48.485 | 66 | 30 | 1 | 28 | 93 | 27 | 88 | 2.54e-12 | 65.1 |
| Msa1039820 | AT5G12430.1 | 46.154 | 91 | 27 | 4 | 29 | 103 | 1026 | 1110 | 9.24e-12 | 63.9 |
| Msa1039820 | AT1G59980.2 | 43.077 | 65 | 33 | 1 | 29 | 93 | 25 | 85 | 1.29e-11 | 62.8 |
| Msa1039820 | AT1G59980.1 | 43.077 | 65 | 33 | 1 | 29 | 93 | 25 | 85 | 1.33e-11 | 63.2 |
| Msa1039820 | AT5G48030.1 | 38.667 | 75 | 42 | 1 | 28 | 102 | 95 | 165 | 1.78e-11 | 62.8 |
| Msa1039820 | AT1G80030.4 | 42.424 | 66 | 33 | 2 | 28 | 93 | 76 | 136 | 5.06e-11 | 61.2 |
| Msa1039820 | AT1G80030.2 | 42.424 | 66 | 33 | 2 | 28 | 93 | 76 | 136 | 5.62e-11 | 61.2 |
| Msa1039820 | AT1G80030.3 | 42.424 | 66 | 33 | 2 | 28 | 93 | 76 | 136 | 5.62e-11 | 61.2 |
| Msa1039820 | AT1G80030.1 | 42.424 | 66 | 33 | 2 | 28 | 93 | 76 | 136 | 5.62e-11 | 61.2 |
| Msa1039820 | AT2G21510.3 | 41.429 | 70 | 37 | 1 | 24 | 93 | 3 | 68 | 6.98e-11 | 60.8 |
| Msa1039820 | AT2G21510.1 | 41.429 | 70 | 37 | 1 | 24 | 93 | 3 | 68 | 6.98e-11 | 60.8 |
| Msa1039820 | AT2G21510.2 | 41.429 | 70 | 37 | 1 | 24 | 93 | 3 | 68 | 7.75e-11 | 60.5 |
| Msa1039820 | AT2G21510.4 | 41.429 | 70 | 37 | 1 | 24 | 93 | 3 | 68 | 7.75e-11 | 60.5 |
| Msa1039820 | AT2G21510.5 | 41.429 | 70 | 37 | 1 | 24 | 93 | 3 | 68 | 8.53e-11 | 60.5 |
Find 52 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGCTATTACTCTGTTCT+TGG | 0.198681 | 7_1:-77143508 | Msa1039820:CDS |
| GGATTTCGAGCGAATTTATC+AGG | 0.209743 | 7_1:+77143319 | None:intergenic |
| CAAATTCAAGAAGCATATTC+AGG | 0.256213 | 7_1:-77143262 | Msa1039820:intron |
| TTGGCTTCTCCGGCAGTTGT+AGG | 0.330200 | 7_1:+77143298 | None:intergenic |
| TCTTCCCAGCCGTCTGATCT+TGG | 0.344100 | 7_1:+77142414 | None:intergenic |
| GCGGCAATGATTGCTGCGCT+TGG | 0.404589 | 7_1:+77142358 | None:intergenic |
| TTCGTTTCAGTTGCAGAGCA+TGG | 0.405625 | 7_1:-77143056 | Msa1039820:intron |
| AATTTGCTGAAACCGTCGTT+TGG | 0.414220 | 7_1:+77143279 | None:intergenic |
| CCTTCCTGCCCATAAAATAA+AGG | 0.414355 | 7_1:-77142197 | Msa1039820:three_prime_UTR |
| TCGTTTCAGTTGCAGAGCAT+GGG | 0.437070 | 7_1:-77143055 | Msa1039820:intron |
| CAAAATTTGTGTTATAATGC+AGG | 0.439049 | 7_1:-77142700 | Msa1039820:CDS |
| TGCATTAAGAAATGAAGAAA+AGG | 0.443910 | 7_1:+77142292 | None:intergenic |
| GTTGAGATGGTAGGTGGAGA+TGG | 0.451612 | 7_1:-77142455 | Msa1039820:CDS |
| TTGCCGCTAGCGTGGTGTAC+TGG | 0.463060 | 7_1:-77142342 | Msa1039820:exon |
| ACAAAGGATGTTTGTTGAGA+TGG | 0.470153 | 7_1:-77142468 | Msa1039820:CDS |
| AAACCGTCGTTTGGCTTCTC+CGG | 0.481969 | 7_1:+77143288 | None:intergenic |
| CCTTCTTGATCCATCACCGT+TGG | 0.486869 | 7_1:+77143559 | None:intergenic |
| TTGAACCAAGATCAGACGGC+TGG | 0.499992 | 7_1:-77142419 | Msa1039820:CDS |
| AAAAGATCAATGTACGATGC+TGG | 0.500396 | 7_1:-77143129 | Msa1039820:CDS |
| TGCTTACCGCAAACTCGCTA+TGG | 0.507423 | 7_1:-77143449 | Msa1039820:intron |
| CGTTTACCATAGCGAGTTTG+CGG | 0.522874 | 7_1:+77143443 | None:intergenic |
| GGAGGAGGATCCAACGGTGA+TGG | 0.526876 | 7_1:-77143569 | Msa1039820:CDS |
| GATCAGACGGCTGGGAAGAG+AGG | 0.537894 | 7_1:-77142410 | Msa1039820:CDS |
| GAAAAGGTTTACAAATACAT+AGG | 0.549549 | 7_1:+77142308 | None:intergenic |
| AGTGCGAATATCAGAGGAGG+AGG | 0.553290 | 7_1:+77143471 | None:intergenic |
| ACTTGGTCTTCTTCTTCAAG+AGG | 0.556126 | 7_1:+77143096 | None:intergenic |
| CGTTTCAGTTGCAGAGCATG+GGG | 0.559039 | 7_1:-77143054 | Msa1039820:intron |
| GCTCGAAATCCTACAACTGC+CGG | 0.560164 | 7_1:-77143307 | Msa1039820:CDS |
| GGTTTACAAATACATAGGAT+AGG | 0.565359 | 7_1:+77142313 | None:intergenic |
| GGGAAGAGAGGACGCTCAAG+TGG | 0.569154 | 7_1:-77142398 | Msa1039820:CDS |
| AGCAATCATTGCCGCTAGCG+TGG | 0.577623 | 7_1:-77142350 | Msa1039820:exon |
| TGATTTGAACCAAGATCAGA+CGG | 0.588129 | 7_1:-77142423 | Msa1039820:CDS |
| ATTGAAGTGAAATTCTACAC+AGG | 0.598105 | 7_1:-77142256 | Msa1039820:three_prime_UTR |
| AGAAGATCTACTACCACCGT+TGG | 0.599024 | 7_1:+77143528 | None:intergenic |
| GATGAATAATGTCAAAGATG+AGG | 0.606591 | 7_1:-77142643 | Msa1039820:intron |
| GATTTCGAGCGAATTTATCA+GGG | 0.606606 | 7_1:+77143320 | None:intergenic |
| TGAACCAAGATCAGACGGCT+GGG | 0.607458 | 7_1:-77142418 | Msa1039820:CDS |
| CAAGAAGGAGGAGGATCCAA+CGG | 0.620400 | 7_1:-77143544 | Msa1039820:CDS |
| GGACGCTCAAGTGGATCAAG+AGG | 0.624597 | 7_1:-77142389 | Msa1039820:CDS |
| ATGTTTGTTGAGATGGTAGG+TGG | 0.628226 | 7_1:-77142461 | Msa1039820:CDS |
| TCATTAGGAGGAGGATCCAA+CGG | 0.632193 | 7_1:-77143575 | Msa1039820:intron |
| GTAAGCAGTGCGAATATCAG+AGG | 0.644250 | 7_1:+77143465 | None:intergenic |
| CCAACGGTGATGGATCAAGA+AGG | 0.647408 | 7_1:-77143559 | Msa1039820:CDS |
| AGGATGTTTGTTGAGATGGT+AGG | 0.652987 | 7_1:-77142464 | Msa1039820:CDS |
| AGCAGTGCGAATATCAGAGG+AGG | 0.654808 | 7_1:+77143468 | None:intergenic |
| GTGATGGATCAAGAAGGAGG+AGG | 0.667540 | 7_1:-77143553 | Msa1039820:CDS |
| TTGAAGTGAAATTCTACACA+GGG | 0.673644 | 7_1:-77142255 | Msa1039820:three_prime_UTR |
| ACGGTGATGGATCAAGAAGG+AGG | 0.684880 | 7_1:-77143556 | Msa1039820:CDS |
| ACAGTTTGGAGGATCTACAA+AGG | 0.691000 | 7_1:-77142484 | Msa1039820:CDS |
| CTGCCGGAGAAGCCAAACGA+CGG | 0.702205 | 7_1:-77143291 | Msa1039820:CDS |
| CATCCAGTACACCACGCTAG+CGG | 0.706919 | 7_1:+77142339 | None:intergenic |
| GAAGGAGGAGGATCCAACGG+TGG | 0.737111 | 7_1:-77143541 | Msa1039820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAAAAAGAATACAAATT+CGG | - | chr7_1:77143333-77143352 | Msa1039820:intron | 10.0% |
| !!! | ATTTATTTATTTAAAGTGAA+TGG | + | chr7_1:77144073-77144092 | None:intergenic | 10.0% |
| !!! | ATTTTTTTTTTTACCAAAAA+AGG | + | chr7_1:77144864-77144883 | None:intergenic | 10.0% |
| !! | AAAATAGTTATAGTATTGTT+TGG | + | chr7_1:77142228-77142247 | None:intergenic | 15.0% |
| !! | AAAATATTGATACTTATGAA+AGG | - | chr7_1:77142303-77142322 | Msa1039820:three_prime_UTR | 15.0% |
| !! | ATAATATATCTCATCATATT+TGG | + | chr7_1:77142358-77142377 | None:intergenic | 15.0% |
| !! | TAATTTATCATTGAGAAAAT+AGG | + | chr7_1:77142535-77142554 | None:intergenic | 15.0% |
| !! | TTTAAAAAGAATACAAATTC+GGG | - | chr7_1:77143334-77143353 | Msa1039820:intron | 15.0% |
| !!! | AAATTCAAATTTTCTATAGA+TGG | - | chr7_1:77144226-77144245 | Msa1039820:intron | 15.0% |
| !! | TTTGGTAAAAAAAAAAATGA+AGG | - | chr7_1:77144866-77144885 | Msa1039820:intron | 15.0% |
| !!! | ATTAAAGTCTAATTTTGTAT+CGG | - | chr7_1:77145305-77145324 | Msa1039820:intron | 15.0% |
| !!! | CTATTTTTTTTACAGTACTA+CGG | - | chr7_1:77142241-77142260 | Msa1039820:three_prime_UTR | 20.0% |
| !!! | TTTTTAAATGTACGACTAAA+TGG | - | chr7_1:77142480-77142499 | Msa1039820:CDS | 20.0% |
| !!! | TTTTAAATGTACGACTAAAT+GGG | - | chr7_1:77142481-77142500 | Msa1039820:CDS | 20.0% |
| !!! | TTTTTTTGCCAACAATAATA+TGG | - | chr7_1:77142570-77142589 | Msa1039820:intron | 20.0% |
| !!! | ACTTTAAGTGTTTTTTCAAA+AGG | - | chr7_1:77142646-77142665 | Msa1039820:CDS | 20.0% |
| !! | AAATGTTAGCTCAAATAAAT+AGG | - | chr7_1:77142840-77142859 | Msa1039820:intron | 20.0% |
| !! | AATGTTAGCTCAAATAAATA+GGG | - | chr7_1:77142841-77142860 | Msa1039820:intron | 20.0% |
| !! | ATGATTTATAGAACAAAACA+CGG | + | chr7_1:77143380-77143399 | None:intergenic | 20.0% |
| !!! | AAATATCTTGTCATACTTTT+GGG | + | chr7_1:77143705-77143724 | None:intergenic | 20.0% |
| !!! | AAAATATCTTGTCATACTTT+TGG | + | chr7_1:77143706-77143725 | None:intergenic | 20.0% |
| !! | GAAAGATATAAACAAATTGT+GGG | + | chr7_1:77143805-77143824 | None:intergenic | 20.0% |
| !! | AATATAAATGAGTAAAACGA+CGG | + | chr7_1:77144040-77144059 | None:intergenic | 20.0% |
| !! | ATATGAGATTGATTATTGAT+TGG | - | chr7_1:77144265-77144284 | Msa1039820:intron | 20.0% |
| !!! | TGGATTCTAATTCTAATTTT+AGG | - | chr7_1:77144732-77144751 | Msa1039820:intron | 20.0% |
| !!! | ACATTTGACCTTTATTTTAT+GGG | + | chr7_1:77145271-77145290 | None:intergenic | 20.0% |
| !!! | AACATTTGACCTTTATTTTA+TGG | + | chr7_1:77145272-77145291 | None:intergenic | 20.0% |
| !!! | TGGGTTTTATTTATGAGATT+CGG | - | chr7_1:77142500-77142519 | Msa1039820:intron | 25.0% |
| ! | GTTCAAATCCATATTATTGT+TGG | + | chr7_1:77142581-77142600 | None:intergenic | 25.0% |
| ! | TACATAACACTGTACTATAA+AGG | + | chr7_1:77142627-77142646 | None:intergenic | 25.0% |
| ! | AAAAGGCTTATGTTGAAATT+TGG | - | chr7_1:77142663-77142682 | Msa1039820:CDS | 25.0% |
| ! | AAAGGCTTATGTTGAAATTT+GGG | - | chr7_1:77142664-77142683 | Msa1039820:CDS | 25.0% |
| ! | TCTATGTAAACTCTTGAATT+CGG | - | chr7_1:77142776-77142795 | Msa1039820:intron | 25.0% |
| ! | GCTCTAATATCATGTTAAAT+AGG | - | chr7_1:77142802-77142821 | Msa1039820:intron | 25.0% |
| ! | TATTTATACACTCAACAGTT+CGG | - | chr7_1:77142874-77142893 | Msa1039820:intron | 25.0% |
| ! | ATAAGAAGTTCAATACTATG+AGG | + | chr7_1:77143253-77143272 | None:intergenic | 25.0% |
| ! | ACACTCTTAAGTAAAGATTA+GGG | + | chr7_1:77143438-77143457 | None:intergenic | 25.0% |
| ! | TACACTCTTAAGTAAAGATT+AGG | + | chr7_1:77143439-77143458 | None:intergenic | 25.0% |
| !!! | TTTGTTGTTGCTAATGAAAA+TGG | + | chr7_1:77143613-77143632 | None:intergenic | 25.0% |
| ! | GGAAAGATATAAACAAATTG+TGG | + | chr7_1:77143806-77143825 | None:intergenic | 25.0% |
| ! | ATAGCAAAAGAAAACGAATT+GGG | + | chr7_1:77143834-77143853 | None:intergenic | 25.0% |
| !!! | TTTTGAAAGCTTTGTTCATT+AGG | - | chr7_1:77143867-77143886 | Msa1039820:intron | 25.0% |
| ! | TTGTTGAATTTGAAAAGAGA+TGG | - | chr7_1:77144112-77144131 | Msa1039820:intron | 25.0% |
| !! | TTCTATAGATGGTAATGAAT+TGG | - | chr7_1:77144237-77144256 | Msa1039820:intron | 25.0% |
| !!! | TTGATTGGTTTTAATGTTGT+TGG | - | chr7_1:77144280-77144299 | Msa1039820:intron | 25.0% |
| ! | TTAAAAAAGGCAAAGCAAAT+GGG | + | chr7_1:77144535-77144554 | None:intergenic | 25.0% |
| ! | ATTAAAAAAGGCAAAGCAAA+TGG | + | chr7_1:77144536-77144555 | None:intergenic | 25.0% |
| ! | CAAAATTTGTGTTATAATGC+AGG | - | chr7_1:77144757-77144776 | Msa1039820:intron | 25.0% |
| !!! | GTTCTAATTGTTTCCTTTTT+TGG | - | chr7_1:77144848-77144867 | Msa1039820:intron | 25.0% |
| !!! | TTGGTATTTTCTGGTTATTT+AGG | - | chr7_1:77144947-77144966 | Msa1039820:intron | 25.0% |
| !!! | TGGTATTTTCTGGTTATTTA+GGG | - | chr7_1:77144948-77144967 | Msa1039820:intron | 25.0% |
| ! | GAAAAGGTTTACAAATACAT+AGG | + | chr7_1:77145152-77145171 | None:intergenic | 25.0% |
| ! | TGCATTAAGAAATGAAGAAA+AGG | + | chr7_1:77145168-77145187 | None:intergenic | 25.0% |
| TGGAGTAAAAAGAAAGACAA+AGG | + | chr7_1:77142208-77142227 | None:intergenic | 30.0% | |
| ! | TGAAGATGTTGGTTAGATAT+TGG | - | chr7_1:77142330-77142349 | Msa1039820:three_prime_UTR | 30.0% |
| ! | GAAGATGTTGGTTAGATATT+GGG | - | chr7_1:77142331-77142350 | Msa1039820:three_prime_UTR | 30.0% |
| !!! | GGGTTTTATTTATGAGATTC+GGG | - | chr7_1:77142501-77142520 | Msa1039820:intron | 30.0% |
| !!! | GGTTTTATTTATGAGATTCG+GGG | - | chr7_1:77142502-77142521 | Msa1039820:intron | 30.0% |
| AAGGCTTATGTTGAAATTTG+GGG | - | chr7_1:77142665-77142684 | Msa1039820:CDS | 30.0% | |
| GAATTCAAGAGTTTACATAG+AGG | + | chr7_1:77142777-77142796 | None:intergenic | 30.0% | |
| AATATCATGTTAAATAGGCC+TGG | - | chr7_1:77142807-77142826 | Msa1039820:intron | 30.0% | |
| ! | TAACATTTGAGATGATATCC+AGG | + | chr7_1:77142828-77142847 | None:intergenic | 30.0% |
| TCAATAGGTTACAAACAATG+TGG | - | chr7_1:77142919-77142938 | Msa1039820:intron | 30.0% | |
| TAATCTACAAATATCACAGC+AGG | - | chr7_1:77143488-77143507 | Msa1039820:CDS | 30.0% | |
| AATATCTAAACTCTCATCAC+CGG | - | chr7_1:77143633-77143652 | Msa1039820:intron | 30.0% | |
| TTTAGAGAGAGAGAAAATTG+TGG | + | chr7_1:77143750-77143769 | None:intergenic | 30.0% | |
| AGATATAAACAAATTGTGGG+AGG | + | chr7_1:77143802-77143821 | None:intergenic | 30.0% | |
| TAGCAAAAGAAAACGAATTG+GGG | + | chr7_1:77143833-77143852 | None:intergenic | 30.0% | |
| CATAGCAAAAGAAAACGAAT+TGG | + | chr7_1:77143835-77143854 | None:intergenic | 30.0% | |
| ! | CAATTCGTTTTCTTTTGCTA+TGG | - | chr7_1:77143833-77143852 | Msa1039820:intron | 30.0% |
| ! | CAAATTCAAGAAGCATATTC+AGG | - | chr7_1:77144195-77144214 | Msa1039820:intron | 30.0% |
| AAGAAGAATTGTTACGAACT+TGG | + | chr7_1:77144381-77144400 | None:intergenic | 30.0% | |
| !!! | GTTTTACCTCGTTTTGTTTA+CGG | + | chr7_1:77144445-77144464 | None:intergenic | 30.0% |
| ACAAGACGAGAAAAACAATA+GGG | + | chr7_1:77144492-77144511 | None:intergenic | 30.0% | |
| ! | AAACACGTGATTTTGTTGAA+AGG | - | chr7_1:77144613-77144632 | Msa1039820:intron | 30.0% |
| AGTTAGGTGCATTTGAATAT+TGG | - | chr7_1:77144712-77144731 | Msa1039820:intron | 30.0% | |
| GATGAATAATGTCAAAGATG+AGG | - | chr7_1:77144814-77144833 | Msa1039820:intron | 30.0% | |
| TCAAAGATGAGGTATACTAT+TGG | - | chr7_1:77144825-77144844 | Msa1039820:intron | 30.0% | |
| CAAAGATGAGGTATACTATT+GGG | - | chr7_1:77144826-77144845 | Msa1039820:intron | 30.0% | |
| !! | ATGTATTGTTGATGATGTGA+TGG | - | chr7_1:77144918-77144937 | Msa1039820:intron | 30.0% |
| !! | TGTATTGTTGATGATGTGAT+GGG | - | chr7_1:77144919-77144938 | Msa1039820:intron | 30.0% |
| !!! | GGTATTTTCTGGTTATTTAG+GGG | - | chr7_1:77144949-77144968 | Msa1039820:intron | 30.0% |
| !!! | GTATTTTCTGGTTATTTAGG+GGG | - | chr7_1:77144950-77144969 | Msa1039820:intron | 30.0% |
| GGTTTACAAATACATAGGAT+AGG | + | chr7_1:77145147-77145166 | None:intergenic | 30.0% | |
| ATTGAAGTGAAATTCTACAC+AGG | - | chr7_1:77145201-77145220 | Msa1039820:intron | 30.0% | |
| TTGAAGTGAAATTCTACACA+GGG | - | chr7_1:77145202-77145221 | Msa1039820:intron | 30.0% | |
| ! | AGTCTAATTTTGTATCGGAT+TGG | - | chr7_1:77145310-77145329 | Msa1039820:intron | 30.0% |
| TCCAAATGTTCAAAGCTCTA+GGG | + | chr7_1:77142275-77142294 | None:intergenic | 35.0% | |
| TGAAAGGTCTATGAAGATGT+TGG | - | chr7_1:77142319-77142338 | Msa1039820:three_prime_UTR | 35.0% | |
| TTATTTATGAGATTCGGGGT+TGG | - | chr7_1:77142506-77142525 | Msa1039820:intron | 35.0% | |
| ! | TTGAACATTCCCTCTTTTAG+AGG | - | chr7_1:77142595-77142614 | Msa1039820:intron | 35.0% |
| ! | TGAACATTCCCTCTTTTAGA+GGG | - | chr7_1:77142596-77142615 | Msa1039820:intron | 35.0% |
| CATATGCTTCCAATCATCAT+CGG | - | chr7_1:77143056-77143075 | Msa1039820:intron | 35.0% | |
| ATGAGGTACGTCAAAATAGA+TGG | + | chr7_1:77143236-77143255 | None:intergenic | 35.0% | |
| TTTGTGGGAGATAGAAACAT+GGG | + | chr7_1:77143681-77143700 | None:intergenic | 35.0% | |
| ! | TTTTGTGGGAGATAGAAACA+TGG | + | chr7_1:77143682-77143701 | None:intergenic | 35.0% |
| !!! | GTCATACTTTTGGGTTTTGT+GGG | + | chr7_1:77143696-77143715 | None:intergenic | 35.0% |
| !!! | TGTCATACTTTTGGGTTTTG+TGG | + | chr7_1:77143697-77143716 | None:intergenic | 35.0% |
| AAGAAAACGAATTGGGGTAT+GGG | + | chr7_1:77143827-77143846 | None:intergenic | 35.0% | |
| AAAGAAAACGAATTGGGGTA+TGG | + | chr7_1:77143828-77143847 | None:intergenic | 35.0% | |
| !! | TGAAAGCTTTGTTCATTAGG+AGG | - | chr7_1:77143870-77143889 | Msa1039820:intron | 35.0% |
| !! | TCTTGCTATTACTCTGTTCT+TGG | - | chr7_1:77143949-77143968 | Msa1039820:intron | 35.0% |
| GATTTCGAGCGAATTTATCA+GGG | + | chr7_1:77144140-77144159 | None:intergenic | 35.0% | |
| AAAAGATCAATGTACGATGC+TGG | - | chr7_1:77144328-77144347 | Msa1039820:intron | 35.0% | |
| ! | ATTTTGCCGTAAACAAAACG+AGG | - | chr7_1:77144436-77144455 | Msa1039820:intron | 35.0% |
| CACAAGACGAGAAAAACAAT+AGG | + | chr7_1:77144493-77144512 | None:intergenic | 35.0% | |
| ATGGGAATCATGTATGTTAC+CGG | + | chr7_1:77144517-77144536 | None:intergenic | 35.0% | |
| !! | GTATTGTTGATGATGTGATG+GGG | - | chr7_1:77144920-77144939 | Msa1039820:intron | 35.0% |
| !!! | TGGGGTATTTTGGTATTTTC+TGG | - | chr7_1:77144938-77144957 | Msa1039820:intron | 35.0% |
| ! | ACAAAGGATGTTTGTTGAGA+TGG | - | chr7_1:77144989-77145008 | Msa1039820:intron | 35.0% |
| TGATTTGAACCAAGATCAGA+CGG | - | chr7_1:77145034-77145053 | Msa1039820:intron | 35.0% | |
| !!! | CTTTATTTTATGGGCAGGAA+GGG | + | chr7_1:77145262-77145281 | None:intergenic | 35.0% |
| !!! | TTGACCTTTATTTTATGGGC+AGG | + | chr7_1:77145267-77145286 | None:intergenic | 35.0% |
| ! | AGGAAAGCATGCATACCAAT+GGG | + | chr7_1:77142188-77142207 | None:intergenic | 40.0% |
| ! | AAGGAAAGCATGCATACCAA+TGG | + | chr7_1:77142189-77142208 | None:intergenic | 40.0% |
| !! | ACCCTAGAGCTTTGAACATT+TGG | - | chr7_1:77142271-77142290 | Msa1039820:three_prime_UTR | 40.0% |
| CTCCAAATGTTCAAAGCTCT+AGG | + | chr7_1:77142276-77142295 | None:intergenic | 40.0% | |
| ! | AGGAACAACCCTCTAAAAGA+GGG | + | chr7_1:77142607-77142626 | None:intergenic | 40.0% |
| ! | AAGGAACAACCCTCTAAAAG+AGG | + | chr7_1:77142608-77142627 | None:intergenic | 40.0% |
| !! | TCACAAACCGGTTTTGTAAG+GGG | + | chr7_1:77142740-77142759 | None:intergenic | 40.0% |
| !! | CTCACAAACCGGTTTTGTAA+GGG | + | chr7_1:77142741-77142760 | None:intergenic | 40.0% |
| ACACTAGTTACCTCACAAAC+CGG | + | chr7_1:77142752-77142771 | None:intergenic | 40.0% | |
| CGACATGAGATTTCACAATG+TGG | - | chr7_1:77143009-77143028 | Msa1039820:intron | 40.0% | |
| !! | CGGCTCGATGTTACTTTATT+TGG | - | chr7_1:77143076-77143095 | Msa1039820:intron | 40.0% |
| GTCAAATTATCACTGCTTGC+AGG | - | chr7_1:77143098-77143117 | Msa1039820:CDS | 40.0% | |
| AAATCAGCAACAACCAACTG+AGG | - | chr7_1:77143166-77143185 | Msa1039820:intron | 40.0% | |
| ! | GGTGAGACTAACTGATAATG+TGG | + | chr7_1:77143215-77143234 | None:intergenic | 40.0% |
| !! | AACCAATCGGCACTGATTAT+GGG | + | chr7_1:77143517-77143536 | None:intergenic | 40.0% |
| TGCAAGCGTATTCAACCAAT+CGG | + | chr7_1:77143530-77143549 | None:intergenic | 40.0% | |
| TGACACAATCGTGTGAAATG+AGG | - | chr7_1:77143551-77143570 | Msa1039820:CDS | 40.0% | |
| AAAGTTCGAGAGAAGTTTGC+CGG | + | chr7_1:77143655-77143674 | None:intergenic | 40.0% | |
| AGAGAGAGAAAATTGTGGAG+CGG | + | chr7_1:77143745-77143764 | None:intergenic | 40.0% | |
| !! | AAGCTTTGTTCATTAGGAGG+AGG | - | chr7_1:77143873-77143892 | Msa1039820:intron | 40.0% |
| GGATTTCGAGCGAATTTATC+AGG | + | chr7_1:77144141-77144160 | None:intergenic | 40.0% | |
| !! | AATTTGCTGAAACCGTCGTT+TGG | + | chr7_1:77144181-77144200 | None:intergenic | 40.0% |
| ! | ACTTGGTCTTCTTCTTCAAG+AGG | + | chr7_1:77144364-77144383 | None:intergenic | 40.0% |
| !!! | GAGGTAAAACTGTGTCGTTT+TGG | - | chr7_1:77144455-77144474 | Msa1039820:intron | 40.0% |
| AGAAAAACAATAGGGTCGTC+TGG | + | chr7_1:77144484-77144503 | None:intergenic | 40.0% | |
| ! | TGTTTTTCTCGTCTTGTGTC+CGG | - | chr7_1:77144495-77144514 | Msa1039820:intron | 40.0% |
| ! | CTTGTGCATGTTTGAAACCA+CGG | - | chr7_1:77144589-77144608 | Msa1039820:intron | 40.0% |
| ACAAAATCACGTGTTTACCG+TGG | + | chr7_1:77144609-77144628 | None:intergenic | 40.0% | |
| !! | GATGATGTGATGGGGTATTT+TGG | - | chr7_1:77144928-77144947 | Msa1039820:intron | 40.0% |
| ACAGTTTGGAGGATCTACAA+AGG | - | chr7_1:77144973-77144992 | Msa1039820:intron | 40.0% | |
| ! | AGGATGTTTGTTGAGATGGT+AGG | - | chr7_1:77144993-77145012 | Msa1039820:intron | 40.0% |
| ! | ATGTTTGTTGAGATGGTAGG+TGG | - | chr7_1:77144996-77145015 | Msa1039820:intron | 40.0% |
| !!! | CCTTTATTTTATGGGCAGGA+AGG | + | chr7_1:77145263-77145282 | None:intergenic | 40.0% |
| CCTTCCTGCCCATAAAATAA+AGG | - | chr7_1:77145260-77145279 | Msa1039820:intron | 40.0% | |
| AAGCATGCATACCAATGGGT+CGG | + | chr7_1:77142184-77142203 | None:intergenic | 45.0% | |
| TTGTAAGGGGCTAACGGAAA+GGG | + | chr7_1:77142727-77142746 | None:intergenic | 45.0% | |
| TTTGTAAGGGGCTAACGGAA+AGG | + | chr7_1:77142728-77142747 | None:intergenic | 45.0% | |
| !! | CCTCACAAACCGGTTTTGTA+AGG | + | chr7_1:77142742-77142761 | None:intergenic | 45.0% |
| !! | CCTTACAAAACCGGTTTGTG+AGG | - | chr7_1:77142739-77142758 | Msa1039820:intron | 45.0% |
| ACTCAACAGTTCGGAAACCT+GGG | - | chr7_1:77142883-77142902 | Msa1039820:intron | 45.0% | |
| GGAGATGTGGGACTATCAAT+AGG | - | chr7_1:77142904-77142923 | Msa1039820:intron | 45.0% | |
| TGGATCCCTGTTATGCACTA+GGG | - | chr7_1:77142978-77142997 | Msa1039820:intron | 45.0% | |
| ATCCACCCTAGTGCATAACA+GGG | + | chr7_1:77142986-77143005 | None:intergenic | 45.0% | |
| TATCCACCCTAGTGCATAAC+AGG | + | chr7_1:77142987-77143006 | None:intergenic | 45.0% | |
| AACATCGAGCCGATGATGAT+TGG | + | chr7_1:77143068-77143087 | None:intergenic | 45.0% | |
| ! | AAATTGTGGGCTACCTCAGT+TGG | + | chr7_1:77143182-77143201 | None:intergenic | 45.0% |
| ! | TGAGGTAGCCCACAATTTTG+CGG | - | chr7_1:77143184-77143203 | Msa1039820:intron | 45.0% |
| !! | ATCCCATAATCAGTGCCGAT+TGG | - | chr7_1:77143512-77143531 | Msa1039820:CDS | 45.0% |
| !! | CAACCAATCGGCACTGATTA+TGG | + | chr7_1:77143518-77143537 | None:intergenic | 45.0% |
| CAATCGTGTGAAATGAGGAG+TGG | - | chr7_1:77143556-77143575 | Msa1039820:CDS | 45.0% | |
| AAAATTGTGGAGCGGTGAAG+AGG | + | chr7_1:77143737-77143756 | None:intergenic | 45.0% | |
| TCATTAGGAGGAGGATCCAA+CGG | - | chr7_1:77143882-77143901 | Msa1039820:intron | 45.0% | |
| AGAAGATCTACTACCACCGT+TGG | + | chr7_1:77143932-77143951 | None:intergenic | 45.0% | |
| GTAAGCAGTGCGAATATCAG+AGG | + | chr7_1:77143995-77144014 | None:intergenic | 45.0% | |
| CGTTTACCATAGCGAGTTTG+CGG | + | chr7_1:77144017-77144036 | None:intergenic | 45.0% | |
| TTCGTTTCAGTTGCAGAGCA+TGG | - | chr7_1:77144401-77144420 | Msa1039820:intron | 45.0% | |
| TCGTTTCAGTTGCAGAGCAT+GGG | - | chr7_1:77144402-77144421 | Msa1039820:intron | 45.0% | |
| CTTGTAGTGCAGCTCAAGTT+AGG | - | chr7_1:77144696-77144715 | Msa1039820:intron | 45.0% | |
| GGTTATTTAGGGGGACAGTT+TGG | - | chr7_1:77144959-77144978 | Msa1039820:intron | 45.0% | |
| TATTTAGGGGGACAGTTTGG+AGG | - | chr7_1:77144962-77144981 | Msa1039820:intron | 45.0% | |
| !! | ATTAAAGTAAAAATTAAAAA+AGG | + | chr7_1:77144548-77144567 | None:intergenic | 5.0% |
| ACATGATCACACCGACCCAT+TGG | - | chr7_1:77142170-77142189 | Msa1039820:three_prime_UTR | 50.0% | |
| !! | CCGGTTTTGTAAGGGGCTAA+CGG | + | chr7_1:77142733-77142752 | None:intergenic | 50.0% |
| CCGTTAGCCCCTTACAAAAC+CGG | - | chr7_1:77142730-77142749 | Msa1039820:intron | 50.0% | |
| CACTCAACAGTTCGGAAACC+TGG | - | chr7_1:77142882-77142901 | Msa1039820:intron | 50.0% | |
| TTCGGAAACCTGGGAGATGT+GGG | - | chr7_1:77142892-77142911 | Msa1039820:intron | 50.0% | |
| ! | TTGATAGTCCCACATCTCCC+AGG | + | chr7_1:77142903-77142922 | None:intergenic | 50.0% |
| ACCCACTTTCACGTCTAGTG+TGG | - | chr7_1:77142952-77142971 | Msa1039820:intron | 50.0% | |
| CCCACACTAGACGTGAAAGT+GGG | + | chr7_1:77142956-77142975 | None:intergenic | 50.0% | |
| CCCACTTTCACGTCTAGTGT+GGG | - | chr7_1:77142953-77142972 | Msa1039820:intron | 50.0% | |
| CTAGTGCATAACAGGGATCC+AGG | + | chr7_1:77142979-77142998 | None:intergenic | 50.0% | |
| CTGGATCCCTGTTATGCACT+AGG | - | chr7_1:77142977-77142996 | Msa1039820:intron | 50.0% | |
| ATCCCTGTTATGCACTAGGG+TGG | - | chr7_1:77142981-77143000 | Msa1039820:intron | 50.0% | |
| ! | GAGGTAGCCCACAATTTTGC+GGG | - | chr7_1:77143185-77143204 | Msa1039820:intron | 50.0% |
| ! | AGGTAGCCCACAATTTTGCG+GGG | - | chr7_1:77143186-77143205 | Msa1039820:intron | 50.0% |
| TGGCAACCCCGCAAAATTGT+GGG | + | chr7_1:77143195-77143214 | None:intergenic | 50.0% | |
| TGAAATGAGGAGTGGCACAG+CGG | - | chr7_1:77143564-77143583 | Msa1039820:CDS | 50.0% | |
| CCTTCTTGATCCATCACCGT+TGG | + | chr7_1:77143901-77143920 | None:intergenic | 50.0% | |
| !! | CCAACGGTGATGGATCAAGA+AGG | - | chr7_1:77143898-77143917 | Msa1039820:intron | 50.0% |
| !! | ACGGTGATGGATCAAGAAGG+AGG | - | chr7_1:77143901-77143920 | Msa1039820:intron | 50.0% |
| !! | GTGATGGATCAAGAAGGAGG+AGG | - | chr7_1:77143904-77143923 | Msa1039820:intron | 50.0% |
| CAAGAAGGAGGAGGATCCAA+CGG | - | chr7_1:77143913-77143932 | Msa1039820:intron | 50.0% | |
| AGTGCGAATATCAGAGGAGG+AGG | + | chr7_1:77143989-77144008 | None:intergenic | 50.0% | |
| AGCAGTGCGAATATCAGAGG+AGG | + | chr7_1:77143992-77144011 | None:intergenic | 50.0% | |
| TGCTTACCGCAAACTCGCTA+TGG | - | chr7_1:77144008-77144027 | Msa1039820:intron | 50.0% | |
| GCTCGAAATCCTACAACTGC+CGG | - | chr7_1:77144150-77144169 | Msa1039820:intron | 50.0% | |
| ! | AAACCGTCGTTTGGCTTCTC+CGG | + | chr7_1:77144172-77144191 | None:intergenic | 50.0% |
| CGTTTCAGTTGCAGAGCATG+GGG | - | chr7_1:77144403-77144422 | Msa1039820:intron | 50.0% | |
| GTTGAGATGGTAGGTGGAGA+TGG | - | chr7_1:77145002-77145021 | Msa1039820:intron | 50.0% | |
| TTGAACCAAGATCAGACGGC+TGG | - | chr7_1:77145038-77145057 | Msa1039820:intron | 50.0% | |
| TGAACCAAGATCAGACGGCT+GGG | - | chr7_1:77145039-77145058 | Msa1039820:intron | 50.0% | |
| GGGGTCTAACTCATCCACGA+TGG | - | chr7_1:77142684-77142703 | Msa1039820:CDS | 55.0% | |
| AGTCAGTCGTTCTGCCATCG+TGG | + | chr7_1:77142701-77142720 | None:intergenic | 55.0% | |
| TAAGGGGCTAACGGAAAGGG+AGG | + | chr7_1:77142724-77142743 | None:intergenic | 55.0% | |
| GTTCGGAAACCTGGGAGATG+TGG | - | chr7_1:77142891-77142910 | Msa1039820:intron | 55.0% | |
| GCCCACACTAGACGTGAAAG+TGG | + | chr7_1:77142957-77142976 | None:intergenic | 55.0% | |
| TTTCACGTCTAGTGTGGGCC+TGG | - | chr7_1:77142958-77142977 | Msa1039820:intron | 55.0% | |
| GTGGCAACCCCGCAAAATTG+TGG | + | chr7_1:77143196-77143215 | None:intergenic | 55.0% | |
| TTGGCTTCTCCGGCAGTTGT+AGG | + | chr7_1:77144162-77144181 | None:intergenic | 55.0% | |
| TCTTCCCAGCCGTCTGATCT+TGG | + | chr7_1:77145046-77145065 | None:intergenic | 55.0% | |
| GGACGCTCAAGTGGATCAAG+AGG | - | chr7_1:77145068-77145087 | Msa1039820:intron | 55.0% | |
| AGCAATCATTGCCGCTAGCG+TGG | - | chr7_1:77145107-77145126 | Msa1039820:intron | 55.0% | |
| CATCCAGTACACCACGCTAG+CGG | + | chr7_1:77145121-77145140 | None:intergenic | 55.0% | |
| GGAGGAGGATCCAACGGTGA+TGG | - | chr7_1:77143888-77143907 | Msa1039820:intron | 60.0% | |
| GAAGGAGGAGGATCCAACGG+TGG | - | chr7_1:77143916-77143935 | Msa1039820:intron | 60.0% | |
| CTGCCGGAGAAGCCAAACGA+CGG | - | chr7_1:77144166-77144185 | Msa1039820:intron | 60.0% | |
| GATCAGACGGCTGGGAAGAG+AGG | - | chr7_1:77145047-77145066 | Msa1039820:intron | 60.0% | |
| GGGAAGAGAGGACGCTCAAG+TGG | - | chr7_1:77145059-77145078 | Msa1039820:intron | 60.0% | |
| GCGGCAATGATTGCTGCGCT+TGG | + | chr7_1:77145102-77145121 | None:intergenic | 60.0% | |
| TTGCCGCTAGCGTGGTGTAC+TGG | - | chr7_1:77145115-77145134 | Msa1039820:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 77142146 | 77145333 | 77142146 | ID=Msa1039820;Name=Msa1039820 |
| chr7_1 | mRNA | 77142146 | 77145333 | 77142146 | ID=Msa1039820-mRNA-1;Parent=Msa1039820;Name=Msa1039820-mRNA-1;_AED=0.20;_eAED=0.20;_QI=0|0.42|0.37|0.75|1|1|8|209|199 |
| chr7_1 | exon | 77142146 | 77142510 | 77142146 | ID=Msa1039820-mRNA-1:exon:20248;Parent=Msa1039820-mRNA-1 |
| chr7_1 | exon | 77142644 | 77142725 | 77142644 | ID=Msa1039820-mRNA-1:exon:20247;Parent=Msa1039820-mRNA-1 |
| chr7_1 | exon | 77143022 | 77143068 | 77143022 | ID=Msa1039820-mRNA-1:exon:20246;Parent=Msa1039820-mRNA-1 |
| chr7_1 | exon | 77143098 | 77143168 | 77143098 | ID=Msa1039820-mRNA-1:exon:20245;Parent=Msa1039820-mRNA-1 |
| chr7_1 | exon | 77143263 | 77143350 | 77143263 | ID=Msa1039820-mRNA-1:exon:20244;Parent=Msa1039820-mRNA-1 |
| chr7_1 | exon | 77143450 | 77143590 | 77143450 | ID=Msa1039820-mRNA-1:exon:20243;Parent=Msa1039820-mRNA-1 |
| chr7_1 | exon | 77145217 | 77145223 | 77145217 | ID=Msa1039820-mRNA-1:exon:20242;Parent=Msa1039820-mRNA-1 |
| chr7_1 | exon | 77145326 | 77145333 | 77145326 | ID=Msa1039820-mRNA-1:exon:20241;Parent=Msa1039820-mRNA-1 |
| chr7_1 | CDS | 77145326 | 77145333 | 77145326 | ID=Msa1039820-mRNA-1:cds;Parent=Msa1039820-mRNA-1 |
| chr7_1 | CDS | 77145217 | 77145223 | 77145217 | ID=Msa1039820-mRNA-1:cds;Parent=Msa1039820-mRNA-1 |
| chr7_1 | CDS | 77143450 | 77143590 | 77143450 | ID=Msa1039820-mRNA-1:cds;Parent=Msa1039820-mRNA-1 |
| chr7_1 | CDS | 77143263 | 77143350 | 77143263 | ID=Msa1039820-mRNA-1:cds;Parent=Msa1039820-mRNA-1 |
| chr7_1 | CDS | 77143098 | 77143168 | 77143098 | ID=Msa1039820-mRNA-1:cds;Parent=Msa1039820-mRNA-1 |
| chr7_1 | CDS | 77143022 | 77143068 | 77143022 | ID=Msa1039820-mRNA-1:cds;Parent=Msa1039820-mRNA-1 |
| chr7_1 | CDS | 77142644 | 77142725 | 77142644 | ID=Msa1039820-mRNA-1:cds;Parent=Msa1039820-mRNA-1 |
| chr7_1 | CDS | 77142355 | 77142510 | 77142355 | ID=Msa1039820-mRNA-1:cds;Parent=Msa1039820-mRNA-1 |
| chr7_1 | three_prime_UTR | 77142146 | 77142354 | 77142146 | ID=Msa1039820-mRNA-1:three_prime_utr;Parent=Msa1039820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
