Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610970 | XP_013456857.3 | 93.506 | 154 | 10 | 0 | 1 | 154 | 1 | 154 | 2.18e-92 | 275 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610970 | sp|Q5SLW9|DNAJ1_THET8 | 43.478 | 115 | 56 | 2 | 13 | 122 | 4 | 114 | 3.93e-19 | 85.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610970 | A0A072UPG5 | 93.506 | 154 | 10 | 0 | 1 | 154 | 1 | 154 | 1.04e-92 | 275 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0610960 | Msa0610970 | 0.982497 | 3.033625e-155 | -8.615850e-47 |
| Msa0610970 | Msa0693730 | 0.879518 | 1.167501e-69 | -8.615850e-47 |
| Msa0610970 | Msa1039820 | 0.810157 | 1.325128e-50 | -8.615850e-47 |
| Msa0456760 | Msa0610970 | 0.803729 | 3.033364e-49 | -8.615850e-47 |
| Msa0267580 | Msa0610970 | 0.864568 | 1.107365e-64 | -8.615850e-47 |
| Msa0578730 | Msa0610970 | 0.901847 | 1.770257e-78 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610970 | MtrunA17_Chr4g0044331 | 93.506 | 154 | 10 | 0 | 1 | 154 | 1 | 154 | 2.00e-96 | 275 |
| Msa0610970 | MtrunA17_Chr7g0271891 | 62.069 | 116 | 42 | 1 | 13 | 128 | 17 | 130 | 8.64e-48 | 152 |
| Msa0610970 | MtrunA17_Chr8g0344721 | 45.968 | 124 | 63 | 3 | 5 | 125 | 3 | 125 | 1.42e-33 | 118 |
| Msa0610970 | MtrunA17_Chr3g0138471 | 44.828 | 87 | 41 | 2 | 13 | 95 | 5 | 88 | 1.82e-17 | 77.4 |
| Msa0610970 | MtrunA17_Chr2g0282741 | 48.571 | 70 | 33 | 1 | 9 | 78 | 1 | 67 | 7.68e-17 | 75.9 |
| Msa0610970 | MtrunA17_Chr2g0282761 | 53.030 | 66 | 28 | 1 | 13 | 78 | 5 | 67 | 1.07e-16 | 75.5 |
| Msa0610970 | MtrunA17_Chr5g0415731 | 40.404 | 99 | 54 | 2 | 10 | 103 | 3 | 101 | 1.14e-16 | 72.0 |
| Msa0610970 | MtrunA17_Chr4g0040501 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 1.55e-16 | 75.1 |
| Msa0610970 | MtrunA17_Chr1g0159491 | 52.941 | 68 | 28 | 1 | 13 | 80 | 7 | 70 | 2.78e-16 | 69.3 |
| Msa0610970 | MtrunA17_Chr4g0006391 | 48.485 | 66 | 31 | 1 | 13 | 78 | 5 | 67 | 5.42e-16 | 73.6 |
| Msa0610970 | MtrunA17_Chr4g0061421 | 49.254 | 67 | 34 | 0 | 13 | 79 | 9 | 75 | 2.43e-15 | 72.0 |
| Msa0610970 | MtrunA17_Chr7g0263971 | 52.941 | 68 | 29 | 1 | 13 | 80 | 370 | 434 | 3.39e-15 | 71.6 |
| Msa0610970 | MtrunA17_Chr2g0324921 | 47.143 | 70 | 34 | 1 | 9 | 78 | 1 | 67 | 4.01e-15 | 70.9 |
| Msa0610970 | MtrunA17_Chr5g0426951 | 50.746 | 67 | 29 | 1 | 12 | 78 | 83 | 145 | 8.00e-15 | 70.5 |
| Msa0610970 | MtrunA17_Chr7g0269841 | 53.731 | 67 | 27 | 2 | 12 | 78 | 26 | 88 | 1.29e-14 | 69.7 |
| Msa0610970 | MtrunA17_Chr1g0209551 | 44.286 | 70 | 35 | 1 | 14 | 83 | 18 | 83 | 9.98e-14 | 67.4 |
| Msa0610970 | MtrunA17_Chr1g0159511 | 52.941 | 68 | 28 | 1 | 11 | 78 | 5 | 68 | 1.13e-13 | 67.0 |
| Msa0610970 | MtrunA17_Chr4g0021141 | 45.455 | 66 | 32 | 1 | 13 | 78 | 23 | 84 | 1.47e-13 | 63.5 |
| Msa0610970 | MtrunA17_Chr8g0334811 | 44.304 | 79 | 32 | 2 | 4 | 78 | 2 | 72 | 1.75e-13 | 66.6 |
| Msa0610970 | MtrunA17_Chr5g0399201 | 47.692 | 65 | 33 | 1 | 14 | 78 | 14 | 77 | 4.15e-13 | 65.9 |
| Msa0610970 | MtrunA17_Chr3g0123861 | 49.315 | 73 | 28 | 3 | 13 | 81 | 83 | 150 | 6.36e-13 | 65.1 |
| Msa0610970 | MtrunA17_Chr6g0478651 | 36.607 | 112 | 58 | 4 | 13 | 116 | 69 | 175 | 7.09e-13 | 65.1 |
| Msa0610970 | MtrunA17_Chr5g0427221 | 48.529 | 68 | 31 | 1 | 13 | 80 | 49 | 112 | 9.30e-13 | 62.0 |
| Msa0610970 | MtrunA17_Chr4g0010781 | 45.333 | 75 | 37 | 1 | 4 | 78 | 78 | 148 | 9.75e-13 | 64.7 |
| Msa0610970 | MtrunA17_Chr2g0333221 | 50.725 | 69 | 29 | 2 | 10 | 78 | 68 | 131 | 1.08e-12 | 64.3 |
| Msa0610970 | MtrunA17_Chr3g0087741 | 41.333 | 75 | 40 | 1 | 4 | 78 | 81 | 151 | 2.15e-12 | 63.5 |
| Msa0610970 | MtrunA17_Chr8g0378161 | 43.284 | 67 | 36 | 1 | 12 | 78 | 60 | 124 | 2.96e-12 | 61.6 |
| Msa0610970 | MtrunA17_Chr6g0460461 | 38.806 | 67 | 40 | 1 | 13 | 78 | 3 | 69 | 3.44e-12 | 61.6 |
| Msa0610970 | MtrunA17_Chr1g0173931 | 44.118 | 68 | 34 | 2 | 11 | 78 | 37 | 100 | 2.38e-11 | 60.1 |
| Msa0610970 | MtrunA17_Chr5g0393371 | 47.826 | 69 | 32 | 1 | 11 | 79 | 5 | 69 | 2.83e-11 | 60.5 |
| Msa0610970 | MtrunA17_Chr5g0414471 | 37.975 | 79 | 45 | 1 | 14 | 92 | 27 | 101 | 3.43e-11 | 60.1 |
| Msa0610970 | MtrunA17_Chr7g0258061 | 44.776 | 67 | 33 | 2 | 12 | 78 | 22 | 84 | 4.36e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0610970 | AT1G71000.1 | 59.231 | 130 | 51 | 1 | 6 | 135 | 2 | 129 | 1.55e-47 | 152 |
| Msa0610970 | AT1G71000.2 | 55.932 | 118 | 50 | 1 | 6 | 123 | 2 | 117 | 1.22e-41 | 137 |
| Msa0610970 | AT1G56300.1 | 57.500 | 120 | 49 | 1 | 9 | 128 | 10 | 127 | 2.20e-41 | 135 |
| Msa0610970 | AT1G56300.2 | 61.616 | 99 | 38 | 0 | 9 | 107 | 10 | 108 | 1.91e-38 | 127 |
| Msa0610970 | AT3G14200.1 | 43.089 | 123 | 66 | 3 | 9 | 128 | 9 | 130 | 9.37e-31 | 111 |
| Msa0610970 | AT1G72416.3 | 43.617 | 94 | 51 | 2 | 14 | 107 | 7 | 98 | 3.36e-22 | 88.2 |
| Msa0610970 | AT1G72416.1 | 43.617 | 94 | 51 | 2 | 14 | 107 | 7 | 98 | 5.04e-22 | 87.4 |
| Msa0610970 | AT1G72416.2 | 43.617 | 94 | 51 | 2 | 14 | 107 | 7 | 98 | 5.10e-22 | 87.4 |
| Msa0610970 | AT1G72416.4 | 43.617 | 94 | 51 | 2 | 14 | 107 | 7 | 98 | 5.16e-22 | 87.4 |
| Msa0610970 | AT5G25530.2 | 51.515 | 66 | 29 | 1 | 13 | 78 | 5 | 67 | 1.39e-17 | 78.2 |
| Msa0610970 | AT4G28480.2 | 47.143 | 70 | 34 | 1 | 9 | 78 | 1 | 67 | 3.37e-16 | 73.9 |
| Msa0610970 | AT3G08910.1 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 3.65e-16 | 74.3 |
| Msa0610970 | AT5G01390.3 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 3.98e-16 | 73.2 |
| Msa0610970 | AT1G59725.1 | 48.485 | 66 | 32 | 1 | 13 | 78 | 5 | 68 | 4.96e-16 | 73.9 |
| Msa0610970 | AT4G28480.1 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 5.66e-16 | 73.9 |
| Msa0610970 | AT5G01390.4 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 5.97e-16 | 72.4 |
| Msa0610970 | AT5G01390.2 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 7.31e-16 | 72.8 |
| Msa0610970 | AT1G10350.1 | 45.455 | 66 | 33 | 1 | 13 | 78 | 5 | 67 | 8.47e-16 | 73.2 |
| Msa0610970 | AT5G01390.1 | 50.000 | 66 | 30 | 1 | 13 | 78 | 5 | 67 | 1.17e-15 | 72.8 |
| Msa0610970 | AT1G74250.1 | 50.000 | 68 | 33 | 1 | 13 | 79 | 12 | 79 | 4.13e-15 | 72.0 |
| Msa0610970 | AT3G47940.1 | 47.143 | 70 | 35 | 1 | 9 | 78 | 1 | 68 | 4.20e-15 | 71.2 |
| Msa0610970 | AT5G25530.1 | 45.946 | 74 | 29 | 2 | 13 | 78 | 5 | 75 | 5.05e-15 | 71.2 |
| Msa0610970 | AT2G20560.1 | 48.485 | 66 | 31 | 1 | 13 | 78 | 5 | 67 | 7.21e-15 | 70.9 |
| Msa0610970 | AT5G16650.1 | 46.429 | 84 | 39 | 3 | 1 | 83 | 1 | 79 | 2.70e-14 | 65.9 |
| Msa0610970 | AT5G16650.2 | 46.429 | 84 | 39 | 3 | 1 | 83 | 1 | 79 | 4.28e-14 | 66.2 |
| Msa0610970 | AT5G03160.1 | 45.588 | 68 | 34 | 1 | 13 | 80 | 371 | 435 | 6.51e-14 | 68.2 |
| Msa0610970 | AT2G22360.1 | 43.617 | 94 | 44 | 3 | 13 | 102 | 87 | 175 | 9.66e-14 | 67.8 |
| Msa0610970 | AT4G13830.1 | 42.857 | 70 | 38 | 1 | 12 | 81 | 66 | 133 | 2.67e-13 | 63.9 |
| Msa0610970 | AT5G06910.1 | 33.129 | 163 | 83 | 7 | 7 | 147 | 23 | 181 | 5.84e-13 | 65.1 |
| Msa0610970 | AT4G13830.3 | 42.857 | 70 | 38 | 1 | 12 | 81 | 66 | 133 | 6.63e-13 | 63.5 |
| Msa0610970 | AT3G62600.1 | 46.377 | 69 | 33 | 1 | 10 | 78 | 24 | 88 | 1.01e-12 | 64.7 |
| Msa0610970 | AT4G13830.2 | 42.857 | 70 | 38 | 1 | 12 | 81 | 66 | 133 | 1.04e-12 | 63.2 |
| Msa0610970 | AT2G33735.1 | 45.455 | 66 | 32 | 1 | 13 | 78 | 23 | 84 | 1.18e-12 | 61.2 |
| Msa0610970 | AT2G33735.2 | 45.455 | 66 | 32 | 1 | 13 | 78 | 23 | 84 | 1.18e-12 | 61.2 |
| Msa0610970 | AT4G39150.3 | 50.000 | 68 | 30 | 1 | 11 | 78 | 5 | 68 | 1.74e-12 | 63.9 |
| Msa0610970 | AT4G39150.1 | 50.000 | 68 | 30 | 1 | 11 | 78 | 5 | 68 | 1.74e-12 | 63.9 |
| Msa0610970 | AT4G39150.2 | 50.000 | 68 | 30 | 1 | 11 | 78 | 5 | 68 | 1.74e-12 | 63.9 |
| Msa0610970 | AT2G41000.1 | 37.681 | 69 | 42 | 1 | 13 | 80 | 4 | 72 | 3.75e-12 | 61.6 |
| Msa0610970 | AT4G09350.1 | 47.887 | 71 | 32 | 2 | 12 | 81 | 106 | 172 | 4.29e-12 | 62.4 |
| Msa0610970 | AT1G80030.4 | 47.826 | 69 | 31 | 2 | 10 | 78 | 73 | 136 | 5.03e-12 | 62.8 |
| Msa0610970 | AT2G41000.2 | 37.681 | 69 | 42 | 1 | 13 | 80 | 4 | 72 | 6.05e-12 | 61.2 |
| Msa0610970 | AT1G80030.2 | 47.826 | 69 | 31 | 2 | 10 | 78 | 73 | 136 | 6.07e-12 | 62.8 |
| Msa0610970 | AT1G80030.3 | 47.826 | 69 | 31 | 2 | 10 | 78 | 73 | 136 | 6.07e-12 | 62.8 |
| Msa0610970 | AT1G80030.1 | 47.826 | 69 | 31 | 2 | 10 | 78 | 73 | 136 | 6.07e-12 | 62.8 |
| Msa0610970 | AT1G28210.3 | 38.554 | 83 | 47 | 1 | 12 | 94 | 48 | 126 | 6.17e-12 | 62.8 |
| Msa0610970 | AT1G28210.1 | 38.554 | 83 | 47 | 1 | 12 | 94 | 48 | 126 | 6.35e-12 | 62.4 |
| Msa0610970 | AT2G35720.1 | 43.056 | 72 | 40 | 1 | 7 | 78 | 10 | 80 | 6.48e-12 | 62.8 |
| Msa0610970 | AT1G28210.2 | 38.554 | 83 | 47 | 1 | 12 | 94 | 48 | 126 | 7.84e-12 | 62.4 |
| Msa0610970 | AT1G68370.1 | 44.615 | 65 | 32 | 1 | 14 | 78 | 19 | 79 | 8.02e-12 | 62.4 |
| Msa0610970 | AT1G24120.1 | 36.709 | 79 | 46 | 1 | 14 | 92 | 22 | 96 | 1.18e-11 | 62.0 |
| Msa0610970 | AT3G12170.1 | 32.026 | 153 | 77 | 6 | 12 | 146 | 11 | 154 | 1.28e-11 | 61.2 |
| Msa0610970 | AT3G12170.2 | 31.081 | 148 | 85 | 5 | 12 | 146 | 47 | 190 | 2.96e-11 | 60.5 |
| Msa0610970 | AT4G39960.1 | 45.455 | 66 | 31 | 1 | 13 | 78 | 86 | 146 | 3.18e-11 | 60.5 |
| Msa0610970 | AT4G39960.2 | 45.455 | 66 | 31 | 1 | 13 | 78 | 86 | 146 | 3.18e-11 | 60.5 |
| Msa0610970 | AT5G48030.1 | 45.455 | 66 | 32 | 1 | 13 | 78 | 95 | 156 | 3.29e-11 | 60.5 |
| Msa0610970 | AT4G10130.2 | 42.105 | 76 | 43 | 1 | 6 | 81 | 5 | 79 | 4.51e-11 | 58.5 |
| Msa0610970 | AT4G10130.4 | 42.105 | 76 | 43 | 1 | 6 | 81 | 5 | 79 | 4.51e-11 | 58.5 |
| Msa0610970 | AT4G10130.1 | 42.105 | 76 | 43 | 1 | 6 | 81 | 5 | 79 | 4.51e-11 | 58.5 |
| Msa0610970 | AT4G10130.3 | 42.105 | 76 | 43 | 1 | 6 | 81 | 5 | 79 | 4.51e-11 | 58.5 |
| Msa0610970 | AT4G10130.5 | 42.105 | 76 | 43 | 1 | 6 | 81 | 5 | 79 | 4.51e-11 | 58.5 |
| Msa0610970 | AT1G59980.2 | 37.975 | 79 | 45 | 1 | 14 | 92 | 25 | 99 | 4.62e-11 | 60.1 |
| Msa0610970 | AT1G59980.1 | 37.975 | 79 | 45 | 1 | 14 | 92 | 25 | 99 | 5.97e-11 | 59.7 |
| Msa0610970 | AT2G21510.3 | 45.588 | 68 | 33 | 1 | 11 | 78 | 5 | 68 | 6.61e-11 | 59.7 |
| Msa0610970 | AT2G21510.1 | 45.588 | 68 | 33 | 1 | 11 | 78 | 5 | 68 | 6.61e-11 | 59.7 |
| Msa0610970 | AT2G21510.5 | 45.588 | 68 | 33 | 1 | 11 | 78 | 5 | 68 | 7.96e-11 | 59.3 |
| Msa0610970 | AT2G21510.2 | 45.588 | 68 | 33 | 1 | 11 | 78 | 5 | 68 | 8.21e-11 | 59.3 |
| Msa0610970 | AT2G21510.4 | 45.588 | 68 | 33 | 1 | 11 | 78 | 5 | 68 | 8.21e-11 | 59.3 |
Find 46 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGCTAAAGTCGGTTAATT+AGG | 0.232680 | 4_2:-58942890 | None:intergenic |
| TTATTGCAGGAGAAGGTTTA+TGG | 0.240463 | 4_2:+58945521 | Msa0610970:intron |
| CAAGGGAAATAATAAATTTA+TGG | 0.275299 | 4_2:-58942934 | None:intergenic |
| GGAGAAGGTTTATGGTTTAG+AGG | 0.283100 | 4_2:+58945529 | Msa0610970:intron |
| ACCAAACTCAACAACTAAAA+AGG | 0.283729 | 4_2:-58943059 | None:intergenic |
| AACATTCAAGAAGCTTATTC+AGG | 0.294312 | 4_2:+58943400 | Msa0610970:CDS |
| TCATCTTACTACAGTATTCT+TGG | 0.298603 | 4_2:+58943151 | Msa0610970:CDS |
| TAATAAATTTATGGAAGTTA+TGG | 0.313874 | 4_2:-58942925 | None:intergenic |
| ATGAGATAAGGCGTGCTTAT+AGG | 0.318628 | 4_2:+58943197 | Msa0610970:CDS |
| GGTGTTCTTGTCCACCTATC+TGG | 0.379195 | 4_2:-58943343 | None:intergenic |
| TTATGGTTTAGAGGAGTTGC+AGG | 0.401445 | 4_2:+58945538 | Msa0610970:CDS |
| CTCGCCTAACTTCAGCCATA+AGG | 0.416208 | 4_2:-58943731 | None:intergenic |
| CTGTAGTAAGATGACGATAA+TGG | 0.435521 | 4_2:-58943142 | None:intergenic |
| AAGGATTCATCAACCATAGA+TGG | 0.439113 | 4_2:-58945617 | None:intergenic |
| GGACGAAATGGTGTCCCTTA+TGG | 0.441713 | 4_2:+58943716 | Msa0610970:CDS |
| GGAGTTGCAGGACATGTTCA+TGG | 0.460111 | 4_2:+58945550 | Msa0610970:CDS |
| AGAGTCCTTCAATGTATTGT+GGG | 0.465130 | 4_2:+58945591 | Msa0610970:CDS |
| ATTCTTCATTAGATGAGATA+AGG | 0.473305 | 4_2:+58943185 | Msa0610970:CDS |
| TCGCCTAACTTCAGCCATAA+GGG | 0.480132 | 4_2:-58943730 | None:intergenic |
| ACCTCATCTTCTTCCTCTTG+AGG | 0.492857 | 4_2:-58943570 | None:intergenic |
| TGCTTATAGGAAGCTTGCTA+TGG | 0.497498 | 4_2:+58943210 | Msa0610970:CDS |
| GAGAGTCCTTCAATGTATTG+TGG | 0.499022 | 4_2:+58945590 | Msa0610970:CDS |
| TGTCCCTTATGGCTGAAGTT+AGG | 0.499106 | 4_2:+58943727 | Msa0610970:CDS |
| CTAAAGTCGGTTAATTAGGA+AGG | 0.501953 | 4_2:-58942886 | None:intergenic |
| AAAAGAACTATGTACGATGC+TGG | 0.511823 | 4_2:+58943537 | Msa0610970:CDS |
| GTATTGTGGGACACCATCTA+TGG | 0.513118 | 4_2:+58945604 | Msa0610970:CDS |
| TGCATAATTGACAAGGAACA+AGG | 0.523055 | 4_2:-58942952 | None:intergenic |
| AATGTTCTGAAATTTACGCT+TGG | 0.532819 | 4_2:-58943383 | None:intergenic |
| TGCAGCAATGGCATCCAGAT+AGG | 0.538770 | 4_2:+58943329 | Msa0610970:intron |
| ACAATGGATGATTATAGTGA+AGG | 0.543818 | 4_2:+58943118 | Msa0610970:exon |
| AACACTTCCTCTCTTAGCAA+AGG | 0.546362 | 4_2:-58945636 | None:intergenic |
| CAATGGATGATTATAGTGAA+GGG | 0.570763 | 4_2:+58943119 | Msa0610970:exon |
| ATATTTATTGAAGCTAAAGT+CGG | 0.576457 | 4_2:-58942899 | None:intergenic |
| TTGGCTTCACTCAATAAAGA+AGG | 0.580558 | 4_2:-58943364 | None:intergenic |
| GGTGTCCCACAATACATTGA+AGG | 0.581503 | 4_2:-58945596 | None:intergenic |
| GCAGGACATGTTCATGGAGA+TGG | 0.589641 | 4_2:+58945556 | Msa0610970:CDS |
| ATGTTCATGGAGATGGCTGA+AGG | 0.590061 | 4_2:+58945563 | Msa0610970:CDS |
| TCCTCAAGAGGAAGAAGATG+AGG | 0.607948 | 4_2:+58943569 | Msa0610970:CDS |
| GATGAATCCTTTGCTAAGAG+AGG | 0.608489 | 4_2:+58945629 | Msa0610970:CDS |
| TAAAGTCGGTTAATTAGGAA+GGG | 0.610354 | 4_2:-58942885 | None:intergenic |
| ATGGTTTAAACGAGTTACAA+TGG | 0.625435 | 4_2:+58943102 | Msa0610970:exon |
| TGGCTTGTATGATCCTCAAG+AGG | 0.660837 | 4_2:+58943557 | Msa0610970:CDS |
| GCATAATTGACAAGGAACAA+GGG | 0.669700 | 4_2:-58942951 | None:intergenic |
| TATGGCTGAAGTTAGGCGAG+AGG | 0.677695 | 4_2:+58943734 | Msa0610970:CDS |
| AGCAATGGCATCCAGATAGG+TGG | 0.677774 | 4_2:+58943332 | Msa0610970:intron |
| GATTGCATGCATAATTGACA+AGG | 0.693732 | 4_2:-58942959 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAATTTATGGAAGTTA+TGG | - | chr4_2:58942928-58942947 | None:intergenic | 15.0% |
| !!! | TTTTGTTTATTAGTTTGTTA+TGG | + | chr4_2:58943645-58943664 | Msa0610970:intron | 15.0% |
| !!! | TGATAGATATTTTTTATTGA+AGG | + | chr4_2:58945303-58945322 | Msa0610970:intron | 15.0% |
| !!! | GATAGATATTTTTTATTGAA+GGG | + | chr4_2:58945304-58945323 | Msa0610970:intron | 15.0% |
| !! | CAATAAGATATATACATATA+TGG | - | chr4_2:58945507-58945526 | None:intergenic | 15.0% |
| !! | ATATTTATTGAAGCTAAAGT+CGG | - | chr4_2:58942902-58942921 | None:intergenic | 20.0% |
| !! | CAAGGGAAATAATAAATTTA+TGG | - | chr4_2:58942937-58942956 | None:intergenic | 20.0% |
| !!! | TGTGAATTTTTGTATCATTT+TGG | + | chr4_2:58943443-58943462 | Msa0610970:intron | 20.0% |
| !!! | AATTTTTGTATCATTTTGGT+GGG | + | chr4_2:58943447-58943466 | Msa0610970:intron | 20.0% |
| !!! | ACATGTTTGTTTCTAATTTT+AGG | + | chr4_2:58943677-58943696 | Msa0610970:intron | 20.0% |
| !! | AATGAATGTTGAAAATTTGA+AGG | + | chr4_2:58943975-58943994 | Msa0610970:intron | 20.0% |
| !! | AAGTGTTCATTTAAATTGTA+CGG | + | chr4_2:58944009-58944028 | Msa0610970:intron | 20.0% |
| !! | TCAAGTATATTATTCTTCAA+GGG | + | chr4_2:58944379-58944398 | Msa0610970:intron | 20.0% |
| !! | ACTAGAAAAATTACAGATTA+AGG | + | chr4_2:58944489-58944508 | Msa0610970:intron | 20.0% |
| !! | TCAAGTATATTATTCTTCAA+GGG | + | chr4_2:58944379-58944398 | Msa0610970:intron | 20.0% |
| !! | CATTTATCTTGTAAATGTAA+AGG | - | chr4_2:58945223-58945242 | None:intergenic | 20.0% |
| !! | CTTTACATTTACAAGATAAA+TGG | + | chr4_2:58945221-58945240 | Msa0610970:intron | 20.0% |
| !! | AAAAAAAAAAAAAAAGACCC+AGG | + | chr4_2:58945378-58945397 | Msa0610970:intron | 20.0% |
| !!! | GTCTTGAATTTTTAACATAA+AGG | + | chr4_2:58945435-58945454 | Msa0610970:intron | 20.0% |
| !! | ATATGTATATATCTTATTGC+AGG | + | chr4_2:58945508-58945527 | Msa0610970:intron | 20.0% |
| !! | AAATGAGACAAGTATGTTTT+TGG | - | chr4_2:58943018-58943037 | None:intergenic | 25.0% |
| !!! | CATATTTTATTTCTAGTGCA+TGG | + | chr4_2:58943083-58943102 | Msa0610970:five_prime_UTR | 25.0% |
| ! | ATTCTTCATTAGATGAGATA+AGG | + | chr4_2:58943185-58943204 | Msa0610970:CDS | 25.0% |
| ! | AATCTTGAATAACAATGCAA+AGG | - | chr4_2:58943264-58943283 | None:intergenic | 25.0% |
| !! | GAATTTTTGTATCATTTTGG+TGG | + | chr4_2:58943446-58943465 | Msa0610970:intron | 25.0% |
| !!! | GTTTTCTGTTTTGTTTTGTT+TGG | + | chr4_2:58943492-58943511 | Msa0610970:intron | 25.0% |
| ! | ACAATCTTCAAGAAAAACTA+AGG | - | chr4_2:58943620-58943639 | None:intergenic | 25.0% |
| !! | TTAGGATTTTTCTGATTTTG+TGG | + | chr4_2:58943695-58943714 | Msa0610970:intron | 25.0% |
| !! | CAAGATCAAACTTTTCTAAT+AGG | - | chr4_2:58943781-58943800 | None:intergenic | 25.0% |
| ! | CTATTAGAAAAGTTTGATCT+TGG | + | chr4_2:58943779-58943798 | Msa0610970:intron | 25.0% |
| ! | TGAAATCTCATTAACAATTG+AGG | - | chr4_2:58943818-58943837 | None:intergenic | 25.0% |
| !! | AATTCAAAATTTTGCACCTT+AGG | - | chr4_2:58943850-58943869 | None:intergenic | 25.0% |
| !!! | TCTCTTTTTAGATTTGGTTT+GGG | - | chr4_2:58943892-58943911 | None:intergenic | 25.0% |
| !! | ATTCACTCTCTTTTTAGATT+TGG | - | chr4_2:58943898-58943917 | None:intergenic | 25.0% |
| ! | AAAGATAGAGATAAAACACA+TGG | + | chr4_2:58943939-58943958 | Msa0610970:intron | 25.0% |
| !! | GAAAAGATTAGTAACAGTTT+TGG | + | chr4_2:58944055-58944074 | Msa0610970:intron | 25.0% |
| ! | CTCAAGTATATTATTCTTCA+AGG | + | chr4_2:58944378-58944397 | Msa0610970:intron | 25.0% |
| ! | TATATTATTCTTCAAGGGTT+TGG | + | chr4_2:58944384-58944403 | Msa0610970:intron | 25.0% |
| ! | TTCTAGTAGATTTCAGATTA+GGG | - | chr4_2:58944476-58944495 | None:intergenic | 25.0% |
| !! | TTTCTAGTAGATTTCAGATT+AGG | - | chr4_2:58944477-58944496 | None:intergenic | 25.0% |
| ! | CTCAAGTATATTATTCTTCA+AGG | + | chr4_2:58944378-58944397 | Msa0610970:intron | 25.0% |
| ! | TATATTATTCTTCAAGGGTT+TGG | + | chr4_2:58944384-58944403 | Msa0610970:intron | 25.0% |
| ! | CTAACTCAATCTTACAAAAA+CGG | + | chr4_2:58945112-58945131 | Msa0610970:intron | 25.0% |
| TAAAGTCGGTTAATTAGGAA+GGG | - | chr4_2:58942888-58942907 | None:intergenic | 30.0% | |
| CAACAACTAAAAAGGAATCA+AGG | - | chr4_2:58943054-58943073 | None:intergenic | 30.0% | |
| !!! | TCCTTTTTAGTTGTTGAGTT+TGG | + | chr4_2:58943058-58943077 | Msa0610970:five_prime_UTR | 30.0% |
| ACCAAACTCAACAACTAAAA+AGG | - | chr4_2:58943062-58943081 | None:intergenic | 30.0% | |
| ATGGTTTAAACGAGTTACAA+TGG | + | chr4_2:58943102-58943121 | Msa0610970:exon | 30.0% | |
| ACAATGGATGATTATAGTGA+AGG | + | chr4_2:58943118-58943137 | Msa0610970:exon | 30.0% | |
| CAATGGATGATTATAGTGAA+GGG | + | chr4_2:58943119-58943138 | Msa0610970:exon | 30.0% | |
| TCATCTTACTACAGTATTCT+TGG | + | chr4_2:58943151-58943170 | Msa0610970:CDS | 30.0% | |
| CAATGCAAAGGACAAAAAAA+GGG | - | chr4_2:58943252-58943271 | None:intergenic | 30.0% | |
| ACAATGCAAAGGACAAAAAA+AGG | - | chr4_2:58943253-58943272 | None:intergenic | 30.0% | |
| !! | TGAATTTTGATCTGAATGTG+AGG | + | chr4_2:58943283-58943302 | Msa0610970:intron | 30.0% |
| !! | AATGTTCTGAAATTTACGCT+TGG | - | chr4_2:58943386-58943405 | None:intergenic | 30.0% |
| AACATTCAAGAAGCTTATTC+AGG | + | chr4_2:58943400-58943419 | Msa0610970:CDS | 30.0% | |
| ! | TCGTACATAGTTCTTTTCTT+GGG | - | chr4_2:58943534-58943553 | None:intergenic | 30.0% |
| ! | ATCGTACATAGTTCTTTTCT+TGG | - | chr4_2:58943535-58943554 | None:intergenic | 30.0% |
| ! | CAAACTTTTCTAATAGGAAG+TGG | - | chr4_2:58943775-58943794 | None:intergenic | 30.0% |
| !! | CTCTCTTTTTAGATTTGGTT+TGG | - | chr4_2:58943893-58943912 | None:intergenic | 30.0% |
| GTTCATTTAAATTGTACGGA+AGG | + | chr4_2:58944013-58944032 | Msa0610970:intron | 30.0% | |
| ATGAATGAGTAATGAGTACA+TGG | + | chr4_2:58944083-58944102 | Msa0610970:intron | 30.0% | |
| AAGGTTAATCTTAGAAATCG+TGG | + | chr4_2:58944108-58944127 | Msa0610970:intron | 30.0% | |
| TTAATCTTAGAAATCGTGGT+TGG | + | chr4_2:58944112-58944131 | Msa0610970:intron | 30.0% | |
| !!! | TAAGCTAGTTTTGTTGAGTT+GGG | - | chr4_2:58944144-58944163 | None:intergenic | 30.0% |
| !!! | ATAAGCTAGTTTTGTTGAGT+TGG | - | chr4_2:58944145-58944164 | None:intergenic | 30.0% |
| ! | AACTCAACAGATTTCTAAGA+TGG | - | chr4_2:58944350-58944369 | None:intergenic | 30.0% |
| TAGTATGCAAGTTGTGTATA+AGG | - | chr4_2:58944420-58944439 | None:intergenic | 30.0% | |
| TCTAGTAGATTTCAGATTAG+GGG | - | chr4_2:58944475-58944494 | None:intergenic | 30.0% | |
| AAAATCACATATTCCAAGCT+TGG | + | chr4_2:58944572-58944591 | Msa0610970:intron | 30.0% | |
| TAGTATGCAAGTTGTGTATA+AGG | - | chr4_2:58944420-58944439 | None:intergenic | 30.0% | |
| ! | CGTTTTTGTAAGATTGAGTT+AGG | - | chr4_2:58945114-58945133 | None:intergenic | 30.0% |
| TTAAAAGTCTCACATCAGAT+AGG | - | chr4_2:58945187-58945206 | None:intergenic | 30.0% | |
| ATATATCTTATTGCAGGAGA+AGG | + | chr4_2:58945514-58945533 | Msa0610970:intron | 30.0% | |
| CTAAAGTCGGTTAATTAGGA+AGG | - | chr4_2:58942889-58942908 | None:intergenic | 35.0% | |
| GAAGCTAAAGTCGGTTAATT+AGG | - | chr4_2:58942893-58942912 | None:intergenic | 35.0% | |
| GCATAATTGACAAGGAACAA+GGG | - | chr4_2:58942954-58942973 | None:intergenic | 35.0% | |
| TGCATAATTGACAAGGAACA+AGG | - | chr4_2:58942955-58942974 | None:intergenic | 35.0% | |
| GATTGCATGCATAATTGACA+AGG | - | chr4_2:58942962-58942981 | None:intergenic | 35.0% | |
| CTGTAGTAAGATGACGATAA+TGG | - | chr4_2:58943145-58943164 | None:intergenic | 35.0% | |
| AATTTCAATGCATGCAGCAA+TGG | + | chr4_2:58943317-58943336 | Msa0610970:intron | 35.0% | |
| TTGGCTTCACTCAATAAAGA+AGG | - | chr4_2:58943367-58943386 | None:intergenic | 35.0% | |
| AAAAGAACTATGTACGATGC+TGG | + | chr4_2:58943537-58943556 | Msa0610970:CDS | 35.0% | |
| ! | TTCTGATTTTGTGGACGAAA+TGG | + | chr4_2:58943704-58943723 | Msa0610970:CDS | 35.0% |
| GATTTCATGACTATGTCCTA+AGG | + | chr4_2:58943831-58943850 | Msa0610970:intron | 35.0% | |
| GAAGGTAACAACTCAGTAAA+GGG | + | chr4_2:58944031-58944050 | Msa0610970:intron | 35.0% | |
| GAGTAATGAGTACATGGTTA+AGG | + | chr4_2:58944089-58944108 | Msa0610970:intron | 35.0% | |
| ! | CTCAACAAAACTAGCTTATG+AGG | + | chr4_2:58944146-58944165 | Msa0610970:intron | 35.0% |
| ! | AACAAAACTAGCTTATGAGG+TGG | + | chr4_2:58944149-58944168 | Msa0610970:intron | 35.0% |
| ! | ACAAAACTAGCTTATGAGGT+GGG | + | chr4_2:58944150-58944169 | Msa0610970:intron | 35.0% |
| AGCGAAAACTTAATAGCTGA+TGG | + | chr4_2:58944295-58944314 | Msa0610970:intron | 35.0% | |
| CTTAATAGCTGATGGTCTAA+CGG | + | chr4_2:58944303-58944322 | Msa0610970:intron | 35.0% | |
| ! | TATTGAAGGGTATGCATACA+AGG | - | chr4_2:58944448-58944467 | None:intergenic | 35.0% |
| TGTCAGGTTTCACTTCTTAA+GGG | - | chr4_2:58944706-58944725 | None:intergenic | 35.0% | |
| ATGTCAGGTTTCACTTCTTA+AGG | - | chr4_2:58944707-58944726 | None:intergenic | 35.0% | |
| GTAGTAGATAGGGTAACAAT+AGG | + | chr4_2:58944900-58944919 | Msa0610970:intron | 35.0% | |
| ! | GTATTTTGCAACTCAACAAG+TGG | - | chr4_2:58944991-58945010 | None:intergenic | 35.0% |
| !! | TTTTGAAGGGTATGCATACA+AGG | - | chr4_2:58945080-58945099 | None:intergenic | 35.0% |
| AAACTGTGCTGCAAGTTTAA+AGG | - | chr4_2:58945268-58945287 | None:intergenic | 35.0% | |
| TTATTGCAGGAGAAGGTTTA+TGG | + | chr4_2:58945521-58945540 | Msa0610970:intron | 35.0% | |
| AGAGTCCTTCAATGTATTGT+GGG | + | chr4_2:58945591-58945610 | Msa0610970:CDS | 35.0% | |
| AAGGATTCATCAACCATAGA+TGG | - | chr4_2:58945620-58945639 | None:intergenic | 35.0% | |
| ATGAGATAAGGCGTGCTTAT+AGG | + | chr4_2:58943197-58943216 | Msa0610970:CDS | 40.0% | |
| !! | TGCTTATAGGAAGCTTGCTA+TGG | + | chr4_2:58943210-58943229 | Msa0610970:CDS | 40.0% |
| GGAAGGTAACAACTCAGTAA+AGG | + | chr4_2:58944030-58944049 | Msa0610970:intron | 40.0% | |
| ! | CAAAACTAGCTTATGAGGTG+GGG | + | chr4_2:58944151-58944170 | Msa0610970:intron | 40.0% |
| TAAAGAGTCCCACATCGAAT+AGG | - | chr4_2:58944213-58944232 | None:intergenic | 40.0% | |
| ATATGGGGCATGGACATAAA+TGG | + | chr4_2:58944259-58944278 | Msa0610970:intron | 40.0% | |
| ! | GATTAGGGGAGTGTATTGAA+GGG | - | chr4_2:58944461-58944480 | None:intergenic | 40.0% |
| ! | AGATTAGGGGAGTGTATTGA+AGG | - | chr4_2:58944462-58944481 | None:intergenic | 40.0% |
| CAGAAGCTTTCTAACTTCAG+AGG | + | chr4_2:58944606-58944625 | Msa0610970:intron | 40.0% | |
| CTTCTTAAGGGATCTCACAA+AGG | - | chr4_2:58944694-58944713 | None:intergenic | 40.0% | |
| AAAATCCTGTCATGCATGGA+AGG | - | chr4_2:58944743-58944762 | None:intergenic | 40.0% | |
| ! | TCCATGCATGACAGGATTTT+TGG | + | chr4_2:58944743-58944762 | Msa0610970:intron | 40.0% |
| TCCAAAAATCCTGTCATGCA+TGG | - | chr4_2:58944747-58944766 | None:intergenic | 40.0% | |
| !! | AGGATTTTTGGAGAGCTTGA+TGG | + | chr4_2:58944755-58944774 | Msa0610970:intron | 40.0% |
| TCATCATCTCAATCAGACAC+AGG | - | chr4_2:58944817-58944836 | None:intergenic | 40.0% | |
| ACTCAGCTTCTGTAGTAGAT+AGG | + | chr4_2:58944889-58944908 | Msa0610970:intron | 40.0% | |
| CTCAGCTTCTGTAGTAGATA+GGG | + | chr4_2:58944890-58944909 | Msa0610970:intron | 40.0% | |
| TCAGTTTCTTCCTTCAGTAC+AGG | + | chr4_2:58944954-58944973 | Msa0610970:intron | 40.0% | |
| ATGCATACCCTTCAAAATCG+TGG | + | chr4_2:58945083-58945102 | Msa0610970:intron | 40.0% | |
| ATACCCTTCAAAATCGTGGT+TGG | + | chr4_2:58945087-58945106 | Msa0610970:intron | 40.0% | |
| TACCCTTCAAAATCGTGGTT+GGG | + | chr4_2:58945088-58945107 | Msa0610970:intron | 40.0% | |
| ACAGACATTCTTAGGGGTTT+AGG | + | chr4_2:58945403-58945422 | Msa0610970:intron | 40.0% | |
| GGAGAAGGTTTATGGTTTAG+AGG | + | chr4_2:58945529-58945548 | Msa0610970:intron | 40.0% | |
| TTATGGTTTAGAGGAGTTGC+AGG | + | chr4_2:58945538-58945557 | Msa0610970:CDS | 40.0% | |
| GAGAGTCCTTCAATGTATTG+TGG | + | chr4_2:58945590-58945609 | Msa0610970:CDS | 40.0% | |
| GATGAATCCTTTGCTAAGAG+AGG | + | chr4_2:58945629-58945648 | Msa0610970:CDS | 40.0% | |
| AACACTTCCTCTCTTAGCAA+AGG | - | chr4_2:58945639-58945658 | None:intergenic | 40.0% | |
| ! | TGGCTTGTATGATCCTCAAG+AGG | + | chr4_2:58943557-58943576 | Msa0610970:CDS | 45.0% |
| TCCTCAAGAGGAAGAAGATG+AGG | + | chr4_2:58943569-58943588 | Msa0610970:CDS | 45.0% | |
| ACCTCATCTTCTTCCTCTTG+AGG | - | chr4_2:58943573-58943592 | None:intergenic | 45.0% | |
| TGTCCCTTATGGCTGAAGTT+AGG | + | chr4_2:58943727-58943746 | Msa0610970:CDS | 45.0% | |
| TCGCCTAACTTCAGCCATAA+GGG | - | chr4_2:58943733-58943752 | None:intergenic | 45.0% | |
| AGACCATCTCCTATTCGATG+TGG | + | chr4_2:58944201-58944220 | Msa0610970:intron | 45.0% | |
| GACCATCTCCTATTCGATGT+GGG | + | chr4_2:58944202-58944221 | Msa0610970:intron | 45.0% | |
| !! | ATGTCTAGTCTTGGACGCAA+GGG | - | chr4_2:58944241-58944260 | None:intergenic | 45.0% |
| !! | TATGTCTAGTCTTGGACGCA+AGG | - | chr4_2:58944242-58944261 | None:intergenic | 45.0% |
| TGCGTCCAAGACTAGACATA+TGG | + | chr4_2:58944242-58944261 | Msa0610970:intron | 45.0% | |
| GCGTCCAAGACTAGACATAT+GGG | + | chr4_2:58944243-58944262 | Msa0610970:intron | 45.0% | |
| CGTCCAAGACTAGACATATG+GGG | + | chr4_2:58944244-58944263 | Msa0610970:intron | 45.0% | |
| ATGCCCCATATGTCTAGTCT+TGG | - | chr4_2:58944250-58944269 | None:intergenic | 45.0% | |
| AAGACTAGACATATGGGGCA+TGG | + | chr4_2:58944249-58944268 | Msa0610970:intron | 45.0% | |
| ! | GATGGTCTAACGGATCTTAG+AGG | + | chr4_2:58944313-58944332 | Msa0610970:intron | 45.0% |
| GCTTTCTAACTTCAGAGGCT+TGG | + | chr4_2:58944611-58944630 | Msa0610970:intron | 45.0% | |
| GGATCTCACAAAGGATGAAG+TGG | - | chr4_2:58944685-58944704 | None:intergenic | 45.0% | |
| GGTGCAAGCATATTGATGTC+AGG | - | chr4_2:58944722-58944741 | None:intergenic | 45.0% | |
| GTCAAGCTATATGGCTGAGA+AGG | - | chr4_2:58944845-58944864 | None:intergenic | 45.0% | |
| TCTCAGCCATATAGCTTGAC+AGG | + | chr4_2:58944845-58944864 | Msa0610970:intron | 45.0% | |
| CATGTGCCTGTCAAGCTATA+TGG | - | chr4_2:58944854-58944873 | None:intergenic | 45.0% | |
| TGTGCTCTGATTGCATGATG+GGG | - | chr4_2:58944932-58944951 | None:intergenic | 45.0% | |
| GTGTGCTCTGATTGCATGAT+GGG | - | chr4_2:58944933-58944952 | None:intergenic | 45.0% | |
| TGTGTGCTCTGATTGCATGA+TGG | - | chr4_2:58944934-58944953 | None:intergenic | 45.0% | |
| GAGAGATTTGCCTGTACTGA+AGG | - | chr4_2:58944967-58944986 | None:intergenic | 45.0% | |
| CAAAAACGGTTTGTGAGACG+AGG | + | chr4_2:58945126-58945145 | Msa0610970:intron | 45.0% | |
| CCTAAGAATGTCTGTGACCT+GGG | - | chr4_2:58945398-58945417 | None:intergenic | 45.0% | |
| CCAGGTCACAGACATTCTTA+GGG | + | chr4_2:58945396-58945415 | Msa0610970:intron | 45.0% | |
| CAGGTCACAGACATTCTTAG+GGG | + | chr4_2:58945397-58945416 | Msa0610970:intron | 45.0% | |
| ATGTTCATGGAGATGGCTGA+AGG | + | chr4_2:58945563-58945582 | Msa0610970:CDS | 45.0% | |
| GGTGTCCCACAATACATTGA+AGG | - | chr4_2:58945599-58945618 | None:intergenic | 45.0% | |
| GTATTGTGGGACACCATCTA+TGG | + | chr4_2:58945604-58945623 | Msa0610970:CDS | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTTTTG+TGG | - | chr4_2:58945369-58945388 | None:intergenic | 5.0% |
| TGCAGCAATGGCATCCAGAT+AGG | + | chr4_2:58943329-58943348 | Msa0610970:intron | 50.0% | |
| AGCAATGGCATCCAGATAGG+TGG | + | chr4_2:58943332-58943351 | Msa0610970:intron | 50.0% | |
| GGTGTTCTTGTCCACCTATC+TGG | - | chr4_2:58943346-58943365 | None:intergenic | 50.0% | |
| GGACGAAATGGTGTCCCTTA+TGG | + | chr4_2:58943716-58943735 | Msa0610970:CDS | 50.0% | |
| CTCGCCTAACTTCAGCCATA+AGG | - | chr4_2:58943734-58943753 | None:intergenic | 50.0% | |
| TATGGCTGAAGTTAGGCGAG+AGG | + | chr4_2:58943734-58943753 | Msa0610970:CDS | 50.0% | |
| GTCCCACATCGAATAGGAGA+TGG | - | chr4_2:58944207-58944226 | None:intergenic | 50.0% | |
| !! | TGTCTAGTCTTGGACGCAAG+GGG | - | chr4_2:58944240-58944259 | None:intergenic | 50.0% |
| TGGGGCATGGACATAAATGG+TGG | + | chr4_2:58944262-58944281 | Msa0610970:intron | 50.0% | |
| GGGGCATGGACATAAATGGT+GGG | + | chr4_2:58944263-58944282 | Msa0610970:intron | 50.0% | |
| ! | GCATGGACATAAATGGTGGG+TGG | + | chr4_2:58944266-58944285 | Msa0610970:intron | 50.0% |
| TGCAGATTGAGAGCCAAGCT+TGG | - | chr4_2:58944588-58944607 | None:intergenic | 50.0% | |
| TTGCACCTTCCATGCATGAC+AGG | + | chr4_2:58944735-58944754 | Msa0610970:intron | 50.0% | |
| AGCTTGACAGGCACATGATG+AGG | + | chr4_2:58944857-58944876 | Msa0610970:intron | 50.0% | |
| ! | GGCCCAACCACGATTTTGAA+GGG | - | chr4_2:58945093-58945112 | None:intergenic | 50.0% |
| ! | AGGCCCAACCACGATTTTGA+AGG | - | chr4_2:58945094-58945113 | None:intergenic | 50.0% |
| CCCAGGTCACAGACATTCTT+AGG | + | chr4_2:58945395-58945414 | Msa0610970:intron | 50.0% | |
| CCCTAAGAATGTCTGTGACC+TGG | - | chr4_2:58945399-58945418 | None:intergenic | 50.0% | |
| GGAGTTGCAGGACATGTTCA+TGG | + | chr4_2:58945550-58945569 | Msa0610970:CDS | 50.0% | |
| GCAGGACATGTTCATGGAGA+TGG | + | chr4_2:58945556-58945575 | Msa0610970:CDS | 50.0% | |
| !! | GTCTAGTCTTGGACGCAAGG+GGG | - | chr4_2:58944239-58944258 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 58942877 | 58945667 | 58942877 | ID=Msa0610970;Name=Msa0610970 |
| chr4_2 | mRNA | 58942877 | 58945667 | 58942877 | ID=Msa0610970-mRNA-1;Parent=Msa0610970;Name=Msa0610970-mRNA-1;_AED=0.15;_eAED=0.15;_QI=244|1|0.8|1|1|1|5|0|154 |
| chr4_2 | exon | 58942877 | 58943231 | 58942877 | ID=Msa0610970-mRNA-1:exon:15596;Parent=Msa0610970-mRNA-1 |
| chr4_2 | exon | 58943334 | 58943421 | 58943334 | ID=Msa0610970-mRNA-1:exon:15597;Parent=Msa0610970-mRNA-1 |
| chr4_2 | exon | 58943520 | 58943590 | 58943520 | ID=Msa0610970-mRNA-1:exon:15598;Parent=Msa0610970-mRNA-1 |
| chr4_2 | exon | 58943699 | 58943755 | 58943699 | ID=Msa0610970-mRNA-1:exon:15599;Parent=Msa0610970-mRNA-1 |
| chr4_2 | exon | 58945530 | 58945667 | 58945530 | ID=Msa0610970-mRNA-1:exon:15600;Parent=Msa0610970-mRNA-1 |
| chr4_2 | five_prime_UTR | 58942877 | 58943120 | 58942877 | ID=Msa0610970-mRNA-1:five_prime_utr;Parent=Msa0610970-mRNA-1 |
| chr4_2 | CDS | 58943121 | 58943231 | 58943121 | ID=Msa0610970-mRNA-1:cds;Parent=Msa0610970-mRNA-1 |
| chr4_2 | CDS | 58943334 | 58943421 | 58943334 | ID=Msa0610970-mRNA-1:cds;Parent=Msa0610970-mRNA-1 |
| chr4_2 | CDS | 58943520 | 58943590 | 58943520 | ID=Msa0610970-mRNA-1:cds;Parent=Msa0610970-mRNA-1 |
| chr4_2 | CDS | 58943699 | 58943755 | 58943699 | ID=Msa0610970-mRNA-1:cds;Parent=Msa0610970-mRNA-1 |
| chr4_2 | CDS | 58945530 | 58945667 | 58945530 | ID=Msa0610970-mRNA-1:cds;Parent=Msa0610970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
