Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611890 | XP_003608052.1 | 89.552 | 201 | 11 | 5 | 1 | 196 | 1 | 196 | 4.94e-117 | 340 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611890 | sp|Q9XIM0|MEE14_ARATH | 59.538 | 173 | 63 | 4 | 27 | 196 | 35 | 203 | 8.21e-62 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611890 | G7JNK2 | 89.552 | 201 | 11 | 5 | 1 | 196 | 1 | 196 | 2.36e-117 | 340 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0611890 | Msa0652050 | 0.848094 | 7.630630e-60 | -8.615850e-47 |
| Msa0611890 | Msa0686230 | 0.815014 | 1.148574e-51 | -8.615850e-47 |
| Msa0611890 | Msa0694610 | 0.804634 | 1.966563e-49 | -8.615850e-47 |
| Msa0381500 | Msa0611890 | 0.800172 | 1.632249e-48 | -8.615850e-47 |
| Msa0295710 | Msa0611890 | 0.800975 | 1.119681e-48 | -8.615850e-47 |
| Msa0519950 | Msa0611890 | 0.806629 | 7.498433e-50 | -8.615850e-47 |
| Msa0556520 | Msa0611890 | 0.831098 | 2.023519e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611890 | MtrunA17_Chr4g0045491 | 89.552 | 201 | 11 | 5 | 1 | 196 | 1 | 196 | 4.54e-121 | 340 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611890 | AT2G15890.1 | 59.538 | 173 | 63 | 4 | 27 | 196 | 35 | 203 | 8.35e-63 | 193 |
| Msa0611890 | AT2G15890.2 | 51.176 | 170 | 54 | 3 | 27 | 196 | 35 | 175 | 1.06e-48 | 157 |
Find 40 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAATTTGGTTCGGCTAAA+AGG | 0.196421 | 4_2:+60283771 | None:intergenic |
| ATCATCTCATCAGCAGATTT+TGG | 0.216032 | 4_2:+60282392 | None:intergenic |
| TTTAGCGACTCTATCTAATT+TGG | 0.243733 | 4_2:+60283758 | None:intergenic |
| TTCTTCTGAATTTATTTCAT+TGG | 0.310693 | 4_2:+60282448 | None:intergenic |
| AATAATGGAAGAAGGAAGTT+TGG | 0.327631 | 4_2:+60283836 | None:intergenic |
| GGAAGTTTGGTTGAAGAAGT+TGG | 0.331092 | 4_2:+60283849 | None:intergenic |
| GAGAGGTTGATTATTGAGAT+TGG | 0.336667 | 4_2:-60282551 | Msa0611890:CDS |
| TTATGGATATGAATGGATTA+TGG | 0.345399 | 4_2:-60282187 | Msa0611890:three_prime_UTR |
| CGGCTAAAAGGTTCAAGCTT+AGG | 0.364559 | 4_2:+60283783 | None:intergenic |
| TCTAGAAGAACAACAAATAA+TGG | 0.365979 | 4_2:+60283821 | None:intergenic |
| ATAATCATCAATCTGTTTCA+TGG | 0.378464 | 4_2:+60282276 | None:intergenic |
| CAAGCTTAGGGATGAAAGAT+TGG | 0.381722 | 4_2:+60283796 | None:intergenic |
| AAAATCTGAGAAAGATCTCT+TGG | 0.387561 | 4_2:-60283718 | Msa0611890:CDS |
| CGACTCTATCTAATTTGGTT+CGG | 0.397835 | 4_2:+60283763 | None:intergenic |
| GGCTAAAAGGTTCAAGCTTA+GGG | 0.406375 | 4_2:+60283784 | None:intergenic |
| CATCAATCTGTTTCATGGTC+TGG | 0.409270 | 4_2:+60282281 | None:intergenic |
| GAAGTTTGGTTGAAGAAGTT+GGG | 0.409888 | 4_2:+60283850 | None:intergenic |
| TTTCTTTCTTTCTTTCACTT+TGG | 0.432490 | 4_2:-60282140 | Msa0611890:three_prime_UTR |
| GTGATGAATCATATAGTTGC+TGG | 0.434059 | 4_2:-60283550 | Msa0611890:CDS |
| AGCTTAGTATATGATGAATC+AGG | 0.449951 | 4_2:+60282347 | None:intergenic |
| TGTTAGTCGTAGGCTAGTTA+TGG | 0.464659 | 4_2:-60282204 | Msa0611890:three_prime_UTR |
| TTTGGTAATCCATCTGGTCT+AGG | 0.470690 | 4_2:+60282410 | None:intergenic |
| TTGTTTGGTAGATTATTGTT+CGG | 0.474583 | 4_2:-60283582 | Msa0611890:intron |
| TACTAAGCTTCTTAGATCCA+TGG | 0.476278 | 4_2:-60282333 | Msa0611890:CDS |
| AAATCTGAGAAAGATCTCTT+GGG | 0.506201 | 4_2:-60283717 | Msa0611890:intron |
| AGGCTAGTTATGGATATGAA+TGG | 0.531243 | 4_2:-60282194 | Msa0611890:three_prime_UTR |
| AAAATCTGCTGATGAGATGA+TGG | 0.537445 | 4_2:-60282390 | Msa0611890:CDS |
| GATTATTGTTCGGTACTTGA+AGG | 0.537788 | 4_2:-60283572 | Msa0611890:CDS |
| GAACAACAAATAATGGAAGA+AGG | 0.539572 | 4_2:+60283828 | None:intergenic |
| ACTAAGCTTCTTAGATCCAT+GGG | 0.550589 | 4_2:-60282332 | Msa0611890:CDS |
| AATGTTTGTCCTAGACCAGA+TGG | 0.557161 | 4_2:-60282419 | Msa0611890:CDS |
| AGGTTGATTATTGAGATTGG+TGG | 0.562667 | 4_2:-60282548 | Msa0611890:CDS |
| CATCTAAAGCAGAGATAGAG+AGG | 0.565695 | 4_2:-60282568 | Msa0611890:CDS |
| TGAATCATATAGTTGCTGGC+AGG | 0.600681 | 4_2:-60283546 | Msa0611890:CDS |
| TTGCGATGAAGAAACAGAGA+AGG | 0.609056 | 4_2:+60283873 | None:intergenic |
| CCATGCAGGTGACTTTCCCA+TGG | 0.612938 | 4_2:+60282316 | None:intergenic |
| ATGATGTGAATGTTAGTCGT+AGG | 0.620227 | 4_2:-60282214 | Msa0611890:three_prime_UTR |
| GGTGCTTCAGAATACCATGC+AGG | 0.623000 | 4_2:+60282302 | None:intergenic |
| CCATGGGAAAGTCACCTGCA+TGG | 0.641511 | 4_2:-60282316 | Msa0611890:CDS |
| TCTCTAATAGGATGTTTACA+CGG | 0.679591 | 4_2:-60282515 | Msa0611890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAGACATAAAAAAAAA+CGG | + | chr4_2:60282335-60282354 | None:intergenic | 10.0% |
| !!! | TATATGTATTTTTGTTTATA+GGG | - | chr4_2:60283775-60283794 | Msa0611890:CDS | 10.0% |
| !! | AAAAAAGACATAAAAAAAAA+CGG | + | chr4_2:60282335-60282354 | None:intergenic | 10.0% |
| !!! | TATATGTATTTTTGTTTATA+GGG | - | chr4_2:60283775-60283794 | Msa0611890:CDS | 10.0% |
| !!! | TTTTGATTTATGATTTTGTT+TGG | - | chr4_2:60282423-60282442 | Msa0611890:CDS | 15.0% |
| !! | AAAATTAAATGAATAACAAC+AGG | + | chr4_2:60282558-60282577 | None:intergenic | 15.0% |
| !! | TCTAAAAATAGAAACAAATT+TGG | + | chr4_2:60282662-60282681 | None:intergenic | 15.0% |
| !!! | CTATTTTTTCATCAAAAAAT+TGG | + | chr4_2:60283119-60283138 | None:intergenic | 15.0% |
| !!! | CAATTTTTTGATGAAAAAAT+AGG | - | chr4_2:60283117-60283136 | Msa0611890:intron | 15.0% |
| !!! | CTATATGTATTTTTGTTTAT+AGG | - | chr4_2:60283774-60283793 | Msa0611890:CDS | 15.0% |
| !!! | TTTTGATTTATGATTTTGTT+TGG | - | chr4_2:60282423-60282442 | Msa0611890:CDS | 15.0% |
| !! | AAAATTAAATGAATAACAAC+AGG | + | chr4_2:60282558-60282577 | None:intergenic | 15.0% |
| !! | TCTAAAAATAGAAACAAATT+TGG | + | chr4_2:60282662-60282681 | None:intergenic | 15.0% |
| !!! | CTATTTTTTCATCAAAAAAT+TGG | + | chr4_2:60283119-60283138 | None:intergenic | 15.0% |
| !!! | CAATTTTTTGATGAAAAAAT+AGG | - | chr4_2:60283117-60283136 | Msa0611890:intron | 15.0% |
| !!! | CTATATGTATTTTTGTTTAT+AGG | - | chr4_2:60283774-60283793 | Msa0611890:CDS | 15.0% |
| !!! | ATTTTTAGATTCTCAAAGAA+TGG | - | chr4_2:60282673-60282692 | Msa0611890:intron | 20.0% |
| !! | AAAAACAAGTGAGAAAATTA+AGG | - | chr4_2:60282772-60282791 | Msa0611890:intron | 20.0% |
| !! | AGTAATAAGTAGTAAATCAA+TGG | + | chr4_2:60282884-60282903 | None:intergenic | 20.0% |
| !! | ATTTACTACTTATTACTGAT+TGG | - | chr4_2:60282887-60282906 | Msa0611890:intron | 20.0% |
| !! | ACAAGAATAAAAAATTATCG+TGG | + | chr4_2:60283004-60283023 | None:intergenic | 20.0% |
| !!! | ACTTTCATTTGTTTGTTTTT+TGG | - | chr4_2:60283248-60283267 | Msa0611890:intron | 20.0% |
| !! | AATATCTAAGCATAATTAAG+GGG | + | chr4_2:60283378-60283397 | None:intergenic | 20.0% |
| !! | GAATATCTAAGCATAATTAA+GGG | + | chr4_2:60283379-60283398 | None:intergenic | 20.0% |
| !! | TGAATATCTAAGCATAATTA+AGG | + | chr4_2:60283380-60283399 | None:intergenic | 20.0% |
| !! | TTCTTCTGAATTTATTTCAT+TGG | + | chr4_2:60283575-60283594 | None:intergenic | 20.0% |
| !!! | ATTTTTAGATTCTCAAAGAA+TGG | - | chr4_2:60282673-60282692 | Msa0611890:intron | 20.0% |
| !! | AAAAACAAGTGAGAAAATTA+AGG | - | chr4_2:60282772-60282791 | Msa0611890:intron | 20.0% |
| !! | AGTAATAAGTAGTAAATCAA+TGG | + | chr4_2:60282884-60282903 | None:intergenic | 20.0% |
| !! | ATTTACTACTTATTACTGAT+TGG | - | chr4_2:60282887-60282906 | Msa0611890:intron | 20.0% |
| !! | ACAAGAATAAAAAATTATCG+TGG | + | chr4_2:60283004-60283023 | None:intergenic | 20.0% |
| !!! | ACTTTCATTTGTTTGTTTTT+TGG | - | chr4_2:60283248-60283267 | Msa0611890:intron | 20.0% |
| !! | AATATCTAAGCATAATTAAG+GGG | + | chr4_2:60283378-60283397 | None:intergenic | 20.0% |
| !! | GAATATCTAAGCATAATTAA+GGG | + | chr4_2:60283379-60283398 | None:intergenic | 20.0% |
| !! | TGAATATCTAAGCATAATTA+AGG | + | chr4_2:60283380-60283399 | None:intergenic | 20.0% |
| !! | TTCTTCTGAATTTATTTCAT+TGG | + | chr4_2:60283575-60283594 | None:intergenic | 20.0% |
| ! | TCTAGAAGAACAACAAATAA+TGG | + | chr4_2:60282202-60282221 | None:intergenic | 25.0% |
| !! | TTCTCAGATTTTTCTATAAG+AGG | + | chr4_2:60282294-60282313 | None:intergenic | 25.0% |
| ! | TTGTTTGGTAGATTATTGTT+CGG | - | chr4_2:60282438-60282457 | Msa0611890:CDS | 25.0% |
| ! | ACAAAGAAACAGAAAAATCA+GGG | + | chr4_2:60282609-60282628 | None:intergenic | 25.0% |
| ! | CAAAATAGGAAAAATCTCAT+GGG | + | chr4_2:60282716-60282735 | None:intergenic | 25.0% |
| ! | TCAAAATAGGAAAAATCTCA+TGG | + | chr4_2:60282717-60282736 | None:intergenic | 25.0% |
| ! | TTGGTAAAATATGAATAGAC+TGG | - | chr4_2:60282906-60282925 | Msa0611890:intron | 25.0% |
| ! | AATAGACTGGAAAAAAACTA+TGG | - | chr4_2:60282919-60282938 | Msa0611890:intron | 25.0% |
| ! | AAATTATATAGCCTGACATT+TGG | + | chr4_2:60283214-60283233 | None:intergenic | 25.0% |
| ! | GAAAAACTGTTTATAGTTGA+AGG | + | chr4_2:60283331-60283350 | None:intergenic | 25.0% |
| ! | GGTGTAAAAAAATCTCTAAT+AGG | - | chr4_2:60283493-60283512 | Msa0611890:intron | 25.0% |
| ! | ATAATCATCAATCTGTTTCA+TGG | + | chr4_2:60283747-60283766 | None:intergenic | 25.0% |
| !!! | ATGTATTTTTGTTTATAGGG+AGG | - | chr4_2:60283778-60283797 | Msa0611890:CDS | 25.0% |
| !!! | TGTATTTTTGTTTATAGGGA+GGG | - | chr4_2:60283779-60283798 | Msa0611890:CDS | 25.0% |
| !!! | TTATGGATATGAATGGATTA+TGG | - | chr4_2:60283833-60283852 | Msa0611890:CDS | 25.0% |
| ! | TTTCTTTCTTTCTTTCACTT+TGG | - | chr4_2:60283880-60283899 | Msa0611890:CDS | 25.0% |
| ! | TCTAGAAGAACAACAAATAA+TGG | + | chr4_2:60282202-60282221 | None:intergenic | 25.0% |
| !! | TTCTCAGATTTTTCTATAAG+AGG | + | chr4_2:60282294-60282313 | None:intergenic | 25.0% |
| ! | TTGTTTGGTAGATTATTGTT+CGG | - | chr4_2:60282438-60282457 | Msa0611890:CDS | 25.0% |
| ! | ACAAAGAAACAGAAAAATCA+GGG | + | chr4_2:60282609-60282628 | None:intergenic | 25.0% |
| ! | CAAAATAGGAAAAATCTCAT+GGG | + | chr4_2:60282716-60282735 | None:intergenic | 25.0% |
| ! | TCAAAATAGGAAAAATCTCA+TGG | + | chr4_2:60282717-60282736 | None:intergenic | 25.0% |
| ! | TTGGTAAAATATGAATAGAC+TGG | - | chr4_2:60282906-60282925 | Msa0611890:intron | 25.0% |
| ! | AATAGACTGGAAAAAAACTA+TGG | - | chr4_2:60282919-60282938 | Msa0611890:intron | 25.0% |
| ! | AAATTATATAGCCTGACATT+TGG | + | chr4_2:60283214-60283233 | None:intergenic | 25.0% |
| ! | GAAAAACTGTTTATAGTTGA+AGG | + | chr4_2:60283331-60283350 | None:intergenic | 25.0% |
| ! | GGTGTAAAAAAATCTCTAAT+AGG | - | chr4_2:60283493-60283512 | Msa0611890:intron | 25.0% |
| ! | ATAATCATCAATCTGTTTCA+TGG | + | chr4_2:60283747-60283766 | None:intergenic | 25.0% |
| !!! | ATGTATTTTTGTTTATAGGG+AGG | - | chr4_2:60283778-60283797 | Msa0611890:CDS | 25.0% |
| !!! | TGTATTTTTGTTTATAGGGA+GGG | - | chr4_2:60283779-60283798 | Msa0611890:CDS | 25.0% |
| !!! | TTATGGATATGAATGGATTA+TGG | - | chr4_2:60283833-60283852 | Msa0611890:CDS | 25.0% |
| ! | TTTCTTTCTTTCTTTCACTT+TGG | - | chr4_2:60283880-60283899 | Msa0611890:CDS | 25.0% |
| ! | AATAATGGAAGAAGGAAGTT+TGG | + | chr4_2:60282187-60282206 | None:intergenic | 30.0% |
| ! | GAACAACAAATAATGGAAGA+AGG | + | chr4_2:60282195-60282214 | None:intergenic | 30.0% |
| TTTAGCGACTCTATCTAATT+TGG | + | chr4_2:60282265-60282284 | None:intergenic | 30.0% | |
| ! | CAGATTTTTCTATAAGAGGA+AGG | + | chr4_2:60282290-60282309 | None:intergenic | 30.0% |
| AAAATCTGAGAAAGATCTCT+TGG | - | chr4_2:60282302-60282321 | Msa0611890:CDS | 30.0% | |
| AAATCTGAGAAAGATCTCTT+GGG | - | chr4_2:60282303-60282322 | Msa0611890:CDS | 30.0% | |
| ! | TCTTCTTTGTTTGAGAGATT+TGG | - | chr4_2:60282577-60282596 | Msa0611890:CDS | 30.0% |
| CACAAAGAAACAGAAAAATC+AGG | + | chr4_2:60282610-60282629 | None:intergenic | 30.0% | |
| GAAACAAATTTGGTCAAGAA+AGG | + | chr4_2:60282652-60282671 | None:intergenic | 30.0% | |
| CCATGTTCTATAGTCAAAAT+AGG | + | chr4_2:60282730-60282749 | None:intergenic | 30.0% | |
| !!! | CCTATTTTGACTATAGAACA+TGG | - | chr4_2:60282727-60282746 | Msa0611890:intron | 30.0% |
| ! | ATCATTGATGTGTTGATCTT+CGG | - | chr4_2:60283037-60283056 | Msa0611890:intron | 30.0% |
| ! | CAGTTTTTCTTAGAAACACA+AGG | - | chr4_2:60283342-60283361 | Msa0611890:intron | 30.0% |
| TAGAAACACAAGGAATTCAT+TGG | - | chr4_2:60283352-60283371 | Msa0611890:intron | 30.0% | |
| TCTCTAATAGGATGTTTACA+CGG | - | chr4_2:60283505-60283524 | Msa0611890:intron | 30.0% | |
| ATGCGTAAACTGAAAAAGAA+TGG | - | chr4_2:60283538-60283557 | Msa0611890:CDS | 30.0% | |
| AGCTTAGTATATGATGAATC+AGG | + | chr4_2:60283676-60283695 | None:intergenic | 30.0% | |
| ! | AATAATGGAAGAAGGAAGTT+TGG | + | chr4_2:60282187-60282206 | None:intergenic | 30.0% |
| ! | GAACAACAAATAATGGAAGA+AGG | + | chr4_2:60282195-60282214 | None:intergenic | 30.0% |
| TTTAGCGACTCTATCTAATT+TGG | + | chr4_2:60282265-60282284 | None:intergenic | 30.0% | |
| ! | CAGATTTTTCTATAAGAGGA+AGG | + | chr4_2:60282290-60282309 | None:intergenic | 30.0% |
| AAAATCTGAGAAAGATCTCT+TGG | - | chr4_2:60282302-60282321 | Msa0611890:CDS | 30.0% | |
| AAATCTGAGAAAGATCTCTT+GGG | - | chr4_2:60282303-60282322 | Msa0611890:CDS | 30.0% | |
| ! | TCTTCTTTGTTTGAGAGATT+TGG | - | chr4_2:60282577-60282596 | Msa0611890:CDS | 30.0% |
| CACAAAGAAACAGAAAAATC+AGG | + | chr4_2:60282610-60282629 | None:intergenic | 30.0% | |
| GAAACAAATTTGGTCAAGAA+AGG | + | chr4_2:60282652-60282671 | None:intergenic | 30.0% | |
| CCATGTTCTATAGTCAAAAT+AGG | + | chr4_2:60282730-60282749 | None:intergenic | 30.0% | |
| !!! | CCTATTTTGACTATAGAACA+TGG | - | chr4_2:60282727-60282746 | Msa0611890:intron | 30.0% |
| ! | ATCATTGATGTGTTGATCTT+CGG | - | chr4_2:60283037-60283056 | Msa0611890:intron | 30.0% |
| ! | CAGTTTTTCTTAGAAACACA+AGG | - | chr4_2:60283342-60283361 | Msa0611890:intron | 30.0% |
| TAGAAACACAAGGAATTCAT+TGG | - | chr4_2:60283352-60283371 | Msa0611890:intron | 30.0% | |
| TCTCTAATAGGATGTTTACA+CGG | - | chr4_2:60283505-60283524 | Msa0611890:intron | 30.0% | |
| ATGCGTAAACTGAAAAAGAA+TGG | - | chr4_2:60283538-60283557 | Msa0611890:CDS | 30.0% | |
| AGCTTAGTATATGATGAATC+AGG | + | chr4_2:60283676-60283695 | None:intergenic | 30.0% | |
| GAAGTTTGGTTGAAGAAGTT+GGG | + | chr4_2:60282173-60282192 | None:intergenic | 35.0% | |
| !! | TCTAATTTGGTTCGGCTAAA+AGG | + | chr4_2:60282252-60282271 | None:intergenic | 35.0% |
| CGACTCTATCTAATTTGGTT+CGG | + | chr4_2:60282260-60282279 | None:intergenic | 35.0% | |
| GATTATTGTTCGGTACTTGA+AGG | - | chr4_2:60282448-60282467 | Msa0611890:CDS | 35.0% | |
| GTGATGAATCATATAGTTGC+TGG | - | chr4_2:60282470-60282489 | Msa0611890:CDS | 35.0% | |
| AGATTTAGAGACCAAATGTC+AGG | - | chr4_2:60283200-60283219 | Msa0611890:intron | 35.0% | |
| TAGTTGAAGGCTAGTACAAT+TGG | + | chr4_2:60283318-60283337 | None:intergenic | 35.0% | |
| TAAAAGATTGTGGAGAGGAA+TGG | + | chr4_2:60283422-60283441 | None:intergenic | 35.0% | |
| TTCTGTAAAAGATTGTGGAG+AGG | + | chr4_2:60283427-60283446 | None:intergenic | 35.0% | |
| ! | TCTCCACAATCTTTTACAGA+AGG | - | chr4_2:60283426-60283445 | Msa0611890:intron | 35.0% |
| ACTCCTTCTGTAAAAGATTG+TGG | + | chr4_2:60283432-60283451 | None:intergenic | 35.0% | |
| ! | GAGAGGTTGATTATTGAGAT+TGG | - | chr4_2:60283469-60283488 | Msa0611890:intron | 35.0% |
| ! | AGGTTGATTATTGAGATTGG+TGG | - | chr4_2:60283472-60283491 | Msa0611890:intron | 35.0% |
| ! | ATCATCTCATCAGCAGATTT+TGG | + | chr4_2:60283631-60283650 | None:intergenic | 35.0% |
| AAAATCTGCTGATGAGATGA+TGG | - | chr4_2:60283630-60283649 | Msa0611890:intron | 35.0% | |
| TACTAAGCTTCTTAGATCCA+TGG | - | chr4_2:60283687-60283706 | Msa0611890:intron | 35.0% | |
| ACTAAGCTTCTTAGATCCAT+GGG | - | chr4_2:60283688-60283707 | Msa0611890:intron | 35.0% | |
| ATGATGTGAATGTTAGTCGT+AGG | - | chr4_2:60283806-60283825 | Msa0611890:CDS | 35.0% | |
| ! | AGGCTAGTTATGGATATGAA+TGG | - | chr4_2:60283826-60283845 | Msa0611890:CDS | 35.0% |
| GAAGTTTGGTTGAAGAAGTT+GGG | + | chr4_2:60282173-60282192 | None:intergenic | 35.0% | |
| !! | TCTAATTTGGTTCGGCTAAA+AGG | + | chr4_2:60282252-60282271 | None:intergenic | 35.0% |
| CGACTCTATCTAATTTGGTT+CGG | + | chr4_2:60282260-60282279 | None:intergenic | 35.0% | |
| GATTATTGTTCGGTACTTGA+AGG | - | chr4_2:60282448-60282467 | Msa0611890:CDS | 35.0% | |
| GTGATGAATCATATAGTTGC+TGG | - | chr4_2:60282470-60282489 | Msa0611890:CDS | 35.0% | |
| AGATTTAGAGACCAAATGTC+AGG | - | chr4_2:60283200-60283219 | Msa0611890:intron | 35.0% | |
| TAGTTGAAGGCTAGTACAAT+TGG | + | chr4_2:60283318-60283337 | None:intergenic | 35.0% | |
| TAAAAGATTGTGGAGAGGAA+TGG | + | chr4_2:60283422-60283441 | None:intergenic | 35.0% | |
| TTCTGTAAAAGATTGTGGAG+AGG | + | chr4_2:60283427-60283446 | None:intergenic | 35.0% | |
| ! | TCTCCACAATCTTTTACAGA+AGG | - | chr4_2:60283426-60283445 | Msa0611890:intron | 35.0% |
| ACTCCTTCTGTAAAAGATTG+TGG | + | chr4_2:60283432-60283451 | None:intergenic | 35.0% | |
| ! | GAGAGGTTGATTATTGAGAT+TGG | - | chr4_2:60283469-60283488 | Msa0611890:intron | 35.0% |
| ! | AGGTTGATTATTGAGATTGG+TGG | - | chr4_2:60283472-60283491 | Msa0611890:intron | 35.0% |
| ! | ATCATCTCATCAGCAGATTT+TGG | + | chr4_2:60283631-60283650 | None:intergenic | 35.0% |
| AAAATCTGCTGATGAGATGA+TGG | - | chr4_2:60283630-60283649 | Msa0611890:intron | 35.0% | |
| TACTAAGCTTCTTAGATCCA+TGG | - | chr4_2:60283687-60283706 | Msa0611890:intron | 35.0% | |
| ACTAAGCTTCTTAGATCCAT+GGG | - | chr4_2:60283688-60283707 | Msa0611890:intron | 35.0% | |
| ATGATGTGAATGTTAGTCGT+AGG | - | chr4_2:60283806-60283825 | Msa0611890:CDS | 35.0% | |
| ! | AGGCTAGTTATGGATATGAA+TGG | - | chr4_2:60283826-60283845 | Msa0611890:CDS | 35.0% |
| TTGCGATGAAGAAACAGAGA+AGG | + | chr4_2:60282150-60282169 | None:intergenic | 40.0% | |
| GGAAGTTTGGTTGAAGAAGT+TGG | + | chr4_2:60282174-60282193 | None:intergenic | 40.0% | |
| CAAGCTTAGGGATGAAAGAT+TGG | + | chr4_2:60282227-60282246 | None:intergenic | 40.0% | |
| GGCTAAAAGGTTCAAGCTTA+GGG | + | chr4_2:60282239-60282258 | None:intergenic | 40.0% | |
| TGAATCATATAGTTGCTGGC+AGG | - | chr4_2:60282474-60282493 | Msa0611890:CDS | 40.0% | |
| ! | CATCTAAAGCAGAGATAGAG+AGG | - | chr4_2:60283452-60283471 | Msa0611890:intron | 40.0% |
| AATGTTTGTCCTAGACCAGA+TGG | - | chr4_2:60283601-60283620 | Msa0611890:intron | 40.0% | |
| ! | TTTGGTAATCCATCTGGTCT+AGG | + | chr4_2:60283613-60283632 | None:intergenic | 40.0% |
| !! | GCAGATTTTGGTAATCCATC+TGG | + | chr4_2:60283619-60283638 | None:intergenic | 40.0% |
| CATCAATCTGTTTCATGGTC+TGG | + | chr4_2:60283742-60283761 | None:intergenic | 40.0% | |
| ! | TGTTAGTCGTAGGCTAGTTA+TGG | - | chr4_2:60283816-60283835 | Msa0611890:CDS | 40.0% |
| TTGCGATGAAGAAACAGAGA+AGG | + | chr4_2:60282150-60282169 | None:intergenic | 40.0% | |
| GGAAGTTTGGTTGAAGAAGT+TGG | + | chr4_2:60282174-60282193 | None:intergenic | 40.0% | |
| CAAGCTTAGGGATGAAAGAT+TGG | + | chr4_2:60282227-60282246 | None:intergenic | 40.0% | |
| GGCTAAAAGGTTCAAGCTTA+GGG | + | chr4_2:60282239-60282258 | None:intergenic | 40.0% | |
| TGAATCATATAGTTGCTGGC+AGG | - | chr4_2:60282474-60282493 | Msa0611890:CDS | 40.0% | |
| ! | CATCTAAAGCAGAGATAGAG+AGG | - | chr4_2:60283452-60283471 | Msa0611890:intron | 40.0% |
| AATGTTTGTCCTAGACCAGA+TGG | - | chr4_2:60283601-60283620 | Msa0611890:intron | 40.0% | |
| ! | TTTGGTAATCCATCTGGTCT+AGG | + | chr4_2:60283613-60283632 | None:intergenic | 40.0% |
| !! | GCAGATTTTGGTAATCCATC+TGG | + | chr4_2:60283619-60283638 | None:intergenic | 40.0% |
| CATCAATCTGTTTCATGGTC+TGG | + | chr4_2:60283742-60283761 | None:intergenic | 40.0% | |
| ! | TGTTAGTCGTAGGCTAGTTA+TGG | - | chr4_2:60283816-60283835 | Msa0611890:CDS | 40.0% |
| CGGCTAAAAGGTTCAAGCTT+AGG | + | chr4_2:60282240-60282259 | None:intergenic | 45.0% | |
| CGGCTAAAAGGTTCAAGCTT+AGG | + | chr4_2:60282240-60282259 | None:intergenic | 45.0% | |
| !!! | TTTGTTTTAATATTTTATTT+TGG | - | chr4_2:60282352-60282371 | Msa0611890:CDS | 5.0% |
| !!! | TTTGTTTTAATATTTTATTT+TGG | - | chr4_2:60282352-60282371 | Msa0611890:CDS | 5.0% |
| GGTGCTTCAGAATACCATGC+AGG | + | chr4_2:60283721-60283740 | None:intergenic | 50.0% | |
| GGTGCTTCAGAATACCATGC+AGG | + | chr4_2:60283721-60283740 | None:intergenic | 50.0% | |
| CCATGCAGGTGACTTTCCCA+TGG | + | chr4_2:60283707-60283726 | None:intergenic | 55.0% | |
| CCATGGGAAAGTCACCTGCA+TGG | - | chr4_2:60283704-60283723 | Msa0611890:intron | 55.0% | |
| CCATGCAGGTGACTTTCCCA+TGG | + | chr4_2:60283707-60283726 | None:intergenic | 55.0% | |
| CCATGGGAAAGTCACCTGCA+TGG | - | chr4_2:60283704-60283723 | Msa0611890:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 60282123 | 60283919 | 60282123 | ID=Msa0611890;Name=Msa0611890 |
| chr4_2 | mRNA | 60282123 | 60283919 | 60282123 | ID=Msa0611890-mRNA-1;Parent=Msa0611890;Name=Msa0611890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.66|1|1|1|3|160|196 |
| chr4_2 | exon | 60282123 | 60282597 | 60282123 | ID=Msa0611890-mRNA-1:exon:16119;Parent=Msa0611890-mRNA-1 |
| chr4_2 | exon | 60283520 | 60283593 | 60283520 | ID=Msa0611890-mRNA-1:exon:16118;Parent=Msa0611890-mRNA-1 |
| chr4_2 | exon | 60283718 | 60283919 | 60283718 | ID=Msa0611890-mRNA-1:exon:16117;Parent=Msa0611890-mRNA-1 |
| chr4_2 | CDS | 60283718 | 60283919 | 60283718 | ID=Msa0611890-mRNA-1:cds;Parent=Msa0611890-mRNA-1 |
| chr4_2 | CDS | 60283520 | 60283593 | 60283520 | ID=Msa0611890-mRNA-1:cds;Parent=Msa0611890-mRNA-1 |
| chr4_2 | CDS | 60282283 | 60282597 | 60282283 | ID=Msa0611890-mRNA-1:cds;Parent=Msa0611890-mRNA-1 |
| chr4_2 | three_prime_UTR | 60282123 | 60282282 | 60282123 | ID=Msa0611890-mRNA-1:three_prime_utr;Parent=Msa0611890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
