Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652050 | XP_003608052.1 | 90.000 | 200 | 11 | 4 | 1 | 195 | 1 | 196 | 3.72e-119 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652050 | sp|Q9XIM0|MEE14_ARATH | 59.884 | 172 | 63 | 3 | 27 | 195 | 35 | 203 | 2.23e-64 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652050 | G7JNK2 | 90.000 | 200 | 11 | 4 | 1 | 195 | 1 | 196 | 1.78e-119 | 346 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0605630 | Msa0652050 | 0.808095 | 3.664326e-50 | -8.615850e-47 |
| Msa0605650 | Msa0652050 | 0.808359 | 3.220294e-50 | -8.615850e-47 |
| Msa0611890 | Msa0652050 | 0.848094 | 7.630630e-60 | -8.615850e-47 |
| Msa0646580 | Msa0652050 | 0.822514 | 2.274105e-53 | -8.615850e-47 |
| Msa0652050 | Msa0694610 | 0.905877 | 2.696762e-80 | -8.615850e-47 |
| Msa0652050 | Msa0837930 | -0.801492 | 8.777620e-49 | -8.615850e-47 |
| Msa0652050 | Msa0867730 | 0.823618 | 1.257430e-53 | -8.615850e-47 |
| Msa0652050 | Msa1130820 | -0.835691 | 1.447752e-56 | -8.615850e-47 |
| Msa0652050 | Msa1212190 | 0.814963 | 1.178635e-51 | -8.615850e-47 |
| Msa0652050 | Msa1212270 | 0.815657 | 8.262357e-52 | -8.615850e-47 |
| Msa0652050 | Msa1259910 | 0.811251 | 7.687240e-51 | -8.615850e-47 |
| Msa0652050 | Msa1406670 | -0.828453 | 8.914244e-55 | -8.615850e-47 |
| Msa0652050 | Msa1448870 | -0.829892 | 3.991165e-55 | -8.615850e-47 |
| Msa0423130 | Msa0652050 | -0.811403 | 7.125750e-51 | -8.615850e-47 |
| Msa0469560 | Msa0652050 | -0.812900 | 3.358915e-51 | -8.615850e-47 |
| Msa0295710 | Msa0652050 | 0.801216 | 9.996755e-49 | -8.615850e-47 |
| Msa0334300 | Msa0652050 | 0.809650 | 1.703749e-50 | -8.615850e-47 |
| Msa0550120 | Msa0652050 | 0.809030 | 2.313778e-50 | -8.615850e-47 |
| Msa0550150 | Msa0652050 | 0.814015 | 1.909974e-51 | -8.615850e-47 |
| Msa0556520 | Msa0652050 | 0.989876 | 4.802950e-180 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652050 | MtrunA17_Chr4g0045491 | 90.000 | 200 | 11 | 4 | 1 | 195 | 1 | 196 | 3.42e-123 | 346 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652050 | AT2G15890.1 | 59.884 | 172 | 63 | 3 | 27 | 195 | 35 | 203 | 2.27e-65 | 200 |
| Msa0652050 | AT2G15890.2 | 51.479 | 169 | 54 | 3 | 27 | 195 | 35 | 175 | 1.36e-49 | 159 |
Find 42 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATTTCATCAGCAGATTT+TGG | 0.193138 | 4_3:+59753950 | None:intergenic |
| TCAAGTTTGGTTCGGCTAAA+AGG | 0.273045 | 4_3:+59755238 | None:intergenic |
| GGTGGTGTAAAATCTTTAAT+AGG | 0.274831 | 4_3:-59754085 | Msa0652050:CDS |
| TTCTTCTGAATTTATTTCAT+TGG | 0.320099 | 4_3:+59754006 | None:intergenic |
| AATAATGGAAGAAGGAAGTT+TGG | 0.327631 | 4_3:+59755303 | None:intergenic |
| GGAAGTTTGGTTGAAGAAGT+TGG | 0.331092 | 4_3:+59755316 | None:intergenic |
| TTATGGATATGAATGGATTA+TGG | 0.345399 | 4_3:-59753743 | Msa0652050:three_prime_UTR |
| TCTAGAAGAACAACAAATAA+TGG | 0.365979 | 4_3:+59755288 | None:intergenic |
| AGCCTCTCTATCTCTGCTTT+AGG | 0.377284 | 4_3:+59754121 | None:intergenic |
| ATAATCATCAATCTGTTTCA+TGG | 0.378464 | 4_3:+59753834 | None:intergenic |
| GAGAGGCTGATTATTGAGAT+TGG | 0.379912 | 4_3:-59754106 | Msa0652050:CDS |
| AAAATCTGAGAAAGATCTCT+TGG | 0.387196 | 4_3:-59755185 | Msa0652050:CDS |
| CGACTCTGTCAAGTTTGGTT+CGG | 0.395191 | 4_3:+59755230 | None:intergenic |
| CATCAATCTGTTTCATGGTC+TGG | 0.409270 | 4_3:+59753839 | None:intergenic |
| GAAGTTTGGTTGAAGAAGTT+GGG | 0.409888 | 4_3:+59755317 | None:intergenic |
| CGGCTAAAAGGTTCAAGCTT+AGG | 0.425055 | 4_3:+59755250 | None:intergenic |
| TTTAGCGACTCTGTCAAGTT+TGG | 0.428057 | 4_3:+59755225 | None:intergenic |
| TTTCTTTCTTTCTTTCACTT+TGG | 0.432490 | 4_3:-59753696 | Msa0652050:three_prime_UTR |
| GTGATGAATCATATAGTTGC+TGG | 0.434059 | 4_3:-59755062 | Msa0652050:CDS |
| AGCTTAGTATATGATGAATC+AGG | 0.449951 | 4_3:+59753905 | None:intergenic |
| TGTTAGTCGTAGGCTAGTTA+TGG | 0.464659 | 4_3:-59753760 | Msa0652050:three_prime_UTR |
| TTTGGTAATCCATCTGGTCT+AGG | 0.470690 | 4_3:+59753968 | None:intergenic |
| TTGTTTGGTAGATTATTGTT+CGG | 0.474583 | 4_3:-59755094 | Msa0652050:intron |
| TACTAAGCTTCTTAGATCCA+TGG | 0.476278 | 4_3:-59753891 | Msa0652050:CDS |
| CAAGCTTAGGAATGAAAGGT+TGG | 0.486187 | 4_3:+59755263 | None:intergenic |
| AAAATCTGCTGATGAAATGA+TGG | 0.503481 | 4_3:-59753948 | Msa0652050:CDS |
| AAATCTGAGAAAGATCTCTT+GGG | 0.506201 | 4_3:-59755184 | Msa0652050:intron |
| TCTTTAATAGGATGTTTACA+TGG | 0.524984 | 4_3:-59754073 | Msa0652050:CDS |
| GGTTCAAGCTTAGGAATGAA+AGG | 0.526887 | 4_3:+59755259 | None:intergenic |
| AGGCTAGTTATGGATATGAA+TGG | 0.531243 | 4_3:-59753750 | Msa0652050:three_prime_UTR |
| GATTATTGTTCGGTACTTGA+AGG | 0.537788 | 4_3:-59755084 | Msa0652050:CDS |
| GAACAACAAATAATGGAAGA+AGG | 0.539572 | 4_3:+59755295 | None:intergenic |
| CACCTAAAGCAGAGATAGAG+AGG | 0.546613 | 4_3:-59754123 | Msa0652050:CDS |
| ACTAAGCTTCTTAGATCCAT+GGG | 0.550589 | 4_3:-59753890 | Msa0652050:CDS |
| AATGTTTGTCCTAGACCAGA+TGG | 0.557161 | 4_3:-59753977 | Msa0652050:CDS |
| TGAATCATATAGTTGCTGGC+AGG | 0.600681 | 4_3:-59755058 | Msa0652050:CDS |
| TTGCGATGAAGAAACAGAGA+AGG | 0.609056 | 4_3:+59755340 | None:intergenic |
| CCATGCAGGTGACTTTCCCA+TGG | 0.612938 | 4_3:+59753874 | None:intergenic |
| GGTGCTTCAGAATACCATGC+AGG | 0.623000 | 4_3:+59753860 | None:intergenic |
| AGGCTGATTATTGAGATTGG+TGG | 0.626912 | 4_3:-59754103 | Msa0652050:CDS |
| CCATGGGAAAGTCACCTGCA+TGG | 0.641511 | 4_3:-59753874 | Msa0652050:CDS |
| GATGTGAATGTGTTAGTCGT+AGG | 0.664341 | 4_3:-59753770 | Msa0652050:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTATGTTATTTGATTT+TGG | - | chr4_3:59753917-59753936 | Msa0652050:CDS | 10.0% |
| !! | TTTAAAAATAGAAACAAATT+TGG | + | chr4_3:59754173-59754192 | None:intergenic | 10.0% |
| !!! | ATTCATATTTTTATGTTAAA+AGG | + | chr4_3:59754370-59754389 | None:intergenic | 10.0% |
| !!! | TATATGTATTTTTGTTTATA+GGG | - | chr4_3:59755240-59755259 | Msa0652050:CDS | 10.0% |
| !!! | TTATTTATGTTATTTGATTT+TGG | - | chr4_3:59753917-59753936 | Msa0652050:CDS | 10.0% |
| !! | TTTAAAAATAGAAACAAATT+TGG | + | chr4_3:59754173-59754192 | None:intergenic | 10.0% |
| !!! | ATTCATATTTTTATGTTAAA+AGG | + | chr4_3:59754370-59754389 | None:intergenic | 10.0% |
| !!! | TATATGTATTTTTGTTTATA+GGG | - | chr4_3:59755240-59755259 | Msa0652050:CDS | 10.0% |
| !! | AAAATTAAATGAATAACAAC+AGG | + | chr4_3:59754069-59754088 | None:intergenic | 15.0% |
| !!! | TTTTAAATTCACAAAGAATA+TGG | - | chr4_3:59754186-59754205 | Msa0652050:intron | 15.0% |
| !!! | CTATTTTTTCATCAAAAAAT+TGG | + | chr4_3:59754592-59754611 | None:intergenic | 15.0% |
| !!! | CAATTTTTTGATGAAAAAAT+AGG | - | chr4_3:59754590-59754609 | Msa0652050:intron | 15.0% |
| !! | AATATTTAAGCATAATTAAG+GGG | + | chr4_3:59754846-59754865 | None:intergenic | 15.0% |
| !! | GAATATTTAAGCATAATTAA+GGG | + | chr4_3:59754847-59754866 | None:intergenic | 15.0% |
| !! | TGAATATTTAAGCATAATTA+AGG | + | chr4_3:59754848-59754867 | None:intergenic | 15.0% |
| !!! | CTATATGTATTTTTGTTTAT+AGG | - | chr4_3:59755239-59755258 | Msa0652050:CDS | 15.0% |
| !! | AAAATTAAATGAATAACAAC+AGG | + | chr4_3:59754069-59754088 | None:intergenic | 15.0% |
| !!! | TTTTAAATTCACAAAGAATA+TGG | - | chr4_3:59754186-59754205 | Msa0652050:intron | 15.0% |
| !!! | CTATTTTTTCATCAAAAAAT+TGG | + | chr4_3:59754592-59754611 | None:intergenic | 15.0% |
| !!! | CAATTTTTTGATGAAAAAAT+AGG | - | chr4_3:59754590-59754609 | Msa0652050:intron | 15.0% |
| !! | AATATTTAAGCATAATTAAG+GGG | + | chr4_3:59754846-59754865 | None:intergenic | 15.0% |
| !! | GAATATTTAAGCATAATTAA+GGG | + | chr4_3:59754847-59754866 | None:intergenic | 15.0% |
| !! | TGAATATTTAAGCATAATTA+AGG | + | chr4_3:59754848-59754867 | None:intergenic | 15.0% |
| !!! | CTATATGTATTTTTGTTTAT+AGG | - | chr4_3:59755239-59755258 | Msa0652050:CDS | 15.0% |
| !!! | TTTTGGTTTATGATTTTGTT+TGG | - | chr4_3:59753934-59753953 | Msa0652050:CDS | 20.0% |
| !! | TAAAACAAGTGAGAAAATTA+AGG | - | chr4_3:59754305-59754324 | Msa0652050:intron | 20.0% |
| !! | AATCTAACAAAATTTCATGA+TGG | + | chr4_3:59754653-59754672 | None:intergenic | 20.0% |
| !!! | ACTTTCATTTGTTTGTTTTT+TGG | - | chr4_3:59754716-59754735 | Msa0652050:intron | 20.0% |
| !! | TTCTTCTGAATTTATTTCAT+TGG | + | chr4_3:59755040-59755059 | None:intergenic | 20.0% |
| !!! | TTTTGGTTTATGATTTTGTT+TGG | - | chr4_3:59753934-59753953 | Msa0652050:CDS | 20.0% |
| !! | TAAAACAAGTGAGAAAATTA+AGG | - | chr4_3:59754305-59754324 | Msa0652050:intron | 20.0% |
| !! | AATCTAACAAAATTTCATGA+TGG | + | chr4_3:59754653-59754672 | None:intergenic | 20.0% |
| !!! | ACTTTCATTTGTTTGTTTTT+TGG | - | chr4_3:59754716-59754735 | Msa0652050:intron | 20.0% |
| !! | TTCTTCTGAATTTATTTCAT+TGG | + | chr4_3:59755040-59755059 | None:intergenic | 20.0% |
| ! | TCTAGAAGAACAACAAATAA+TGG | + | chr4_3:59753758-59753777 | None:intergenic | 25.0% |
| !!! | TTCTCAGATTTTTCAATCAA+AGG | + | chr4_3:59753850-59753869 | None:intergenic | 25.0% |
| ! | ACACGAAATAAGAAAGAAAA+CGG | + | chr4_3:59753891-59753910 | None:intergenic | 25.0% |
| ! | TTGTTTGGTAGATTATTGTT+CGG | - | chr4_3:59753949-59753968 | Msa0652050:CDS | 25.0% |
| ! | TAGTCACATATAGTCAAAAT+AGG | + | chr4_3:59754241-59754260 | None:intergenic | 25.0% |
| !! | TGTGATTGAGAATTTTTACT+TGG | - | chr4_3:59754627-59754646 | Msa0652050:intron | 25.0% |
| ! | AAATTATATAGCCTGACATT+TGG | + | chr4_3:59754682-59754701 | None:intergenic | 25.0% |
| ! | TCTTTAATAGGATGTTTACA+TGG | - | chr4_3:59754970-59754989 | Msa0652050:intron | 25.0% |
| ! | ATAATCATCAATCTGTTTCA+TGG | + | chr4_3:59755212-59755231 | None:intergenic | 25.0% |
| !!! | ATGTATTTTTGTTTATAGGG+AGG | - | chr4_3:59755243-59755262 | Msa0652050:CDS | 25.0% |
| !!! | TGTATTTTTGTTTATAGGGA+GGG | - | chr4_3:59755244-59755263 | Msa0652050:CDS | 25.0% |
| !!! | TTATGGATATGAATGGATTA+TGG | - | chr4_3:59755300-59755319 | Msa0652050:CDS | 25.0% |
| ! | TTTCTTTCTTTCTTTCACTT+TGG | - | chr4_3:59755347-59755366 | Msa0652050:CDS | 25.0% |
| ! | TCTAGAAGAACAACAAATAA+TGG | + | chr4_3:59753758-59753777 | None:intergenic | 25.0% |
| !!! | TTCTCAGATTTTTCAATCAA+AGG | + | chr4_3:59753850-59753869 | None:intergenic | 25.0% |
| ! | ACACGAAATAAGAAAGAAAA+CGG | + | chr4_3:59753891-59753910 | None:intergenic | 25.0% |
| ! | TTGTTTGGTAGATTATTGTT+CGG | - | chr4_3:59753949-59753968 | Msa0652050:CDS | 25.0% |
| ! | TAGTCACATATAGTCAAAAT+AGG | + | chr4_3:59754241-59754260 | None:intergenic | 25.0% |
| !! | TGTGATTGAGAATTTTTACT+TGG | - | chr4_3:59754627-59754646 | Msa0652050:intron | 25.0% |
| ! | AAATTATATAGCCTGACATT+TGG | + | chr4_3:59754682-59754701 | None:intergenic | 25.0% |
| ! | TCTTTAATAGGATGTTTACA+TGG | - | chr4_3:59754970-59754989 | Msa0652050:intron | 25.0% |
| ! | ATAATCATCAATCTGTTTCA+TGG | + | chr4_3:59755212-59755231 | None:intergenic | 25.0% |
| !!! | ATGTATTTTTGTTTATAGGG+AGG | - | chr4_3:59755243-59755262 | Msa0652050:CDS | 25.0% |
| !!! | TGTATTTTTGTTTATAGGGA+GGG | - | chr4_3:59755244-59755263 | Msa0652050:CDS | 25.0% |
| !!! | TTATGGATATGAATGGATTA+TGG | - | chr4_3:59755300-59755319 | Msa0652050:CDS | 25.0% |
| ! | TTTCTTTCTTTCTTTCACTT+TGG | - | chr4_3:59755347-59755366 | Msa0652050:CDS | 25.0% |
| ! | AATAATGGAAGAAGGAAGTT+TGG | + | chr4_3:59753743-59753762 | None:intergenic | 30.0% |
| ! | GAACAACAAATAATGGAAGA+AGG | + | chr4_3:59753751-59753770 | None:intergenic | 30.0% |
| !! | CAGATTTTTCAATCAAAGGA+AGG | + | chr4_3:59753846-59753865 | None:intergenic | 30.0% |
| AAAATCTGAGAAAGATCTCT+TGG | - | chr4_3:59753858-59753877 | Msa0652050:CDS | 30.0% | |
| AAATCTGAGAAAGATCTCTT+GGG | - | chr4_3:59753859-59753878 | Msa0652050:CDS | 30.0% | |
| ! | TCTTCTTTGTTTGAGAGATT+TGG | - | chr4_3:59754088-59754107 | Msa0652050:CDS | 30.0% |
| ACACAGAAACAGAAAAATCA+GGG | + | chr4_3:59754120-59754139 | None:intergenic | 30.0% | |
| GAAACAAATTTGGTCAAGAA+AGG | + | chr4_3:59754163-59754182 | None:intergenic | 30.0% | |
| ATGTGACTATAGATAGAACA+TGG | - | chr4_3:59754252-59754271 | Msa0652050:intron | 30.0% | |
| ! | ATCATTGATGTGTTGATCTT+CGG | - | chr4_3:59754510-59754529 | Msa0652050:intron | 30.0% |
| GAACATCTGTTTATAGTTGA+AGG | + | chr4_3:59754799-59754818 | None:intergenic | 30.0% | |
| TAGAAACACAAGGAATTCAT+TGG | - | chr4_3:59754820-59754839 | Msa0652050:intron | 30.0% | |
| GGTGGTGTAAAATCTTTAAT+AGG | - | chr4_3:59754958-59754977 | Msa0652050:intron | 30.0% | |
| ATGCGTAAACTGAAAAAGAA+TGG | - | chr4_3:59755003-59755022 | Msa0652050:intron | 30.0% | |
| ! | ATCATTTCATCAGCAGATTT+TGG | + | chr4_3:59755096-59755115 | None:intergenic | 30.0% |
| AAAATCTGCTGATGAAATGA+TGG | - | chr4_3:59755095-59755114 | Msa0652050:intron | 30.0% | |
| AGCTTAGTATATGATGAATC+AGG | + | chr4_3:59755141-59755160 | None:intergenic | 30.0% | |
| ! | AATAATGGAAGAAGGAAGTT+TGG | + | chr4_3:59753743-59753762 | None:intergenic | 30.0% |
| ! | GAACAACAAATAATGGAAGA+AGG | + | chr4_3:59753751-59753770 | None:intergenic | 30.0% |
| !! | CAGATTTTTCAATCAAAGGA+AGG | + | chr4_3:59753846-59753865 | None:intergenic | 30.0% |
| AAAATCTGAGAAAGATCTCT+TGG | - | chr4_3:59753858-59753877 | Msa0652050:CDS | 30.0% | |
| AAATCTGAGAAAGATCTCTT+GGG | - | chr4_3:59753859-59753878 | Msa0652050:CDS | 30.0% | |
| ! | TCTTCTTTGTTTGAGAGATT+TGG | - | chr4_3:59754088-59754107 | Msa0652050:CDS | 30.0% |
| ACACAGAAACAGAAAAATCA+GGG | + | chr4_3:59754120-59754139 | None:intergenic | 30.0% | |
| GAAACAAATTTGGTCAAGAA+AGG | + | chr4_3:59754163-59754182 | None:intergenic | 30.0% | |
| ATGTGACTATAGATAGAACA+TGG | - | chr4_3:59754252-59754271 | Msa0652050:intron | 30.0% | |
| ! | ATCATTGATGTGTTGATCTT+CGG | - | chr4_3:59754510-59754529 | Msa0652050:intron | 30.0% |
| GAACATCTGTTTATAGTTGA+AGG | + | chr4_3:59754799-59754818 | None:intergenic | 30.0% | |
| TAGAAACACAAGGAATTCAT+TGG | - | chr4_3:59754820-59754839 | Msa0652050:intron | 30.0% | |
| GGTGGTGTAAAATCTTTAAT+AGG | - | chr4_3:59754958-59754977 | Msa0652050:intron | 30.0% | |
| ATGCGTAAACTGAAAAAGAA+TGG | - | chr4_3:59755003-59755022 | Msa0652050:intron | 30.0% | |
| ! | ATCATTTCATCAGCAGATTT+TGG | + | chr4_3:59755096-59755115 | None:intergenic | 30.0% |
| AAAATCTGCTGATGAAATGA+TGG | - | chr4_3:59755095-59755114 | Msa0652050:intron | 30.0% | |
| AGCTTAGTATATGATGAATC+AGG | + | chr4_3:59755141-59755160 | None:intergenic | 30.0% | |
| GAAGTTTGGTTGAAGAAGTT+GGG | + | chr4_3:59753729-59753748 | None:intergenic | 35.0% | |
| GATTATTGTTCGGTACTTGA+AGG | - | chr4_3:59753959-59753978 | Msa0652050:CDS | 35.0% | |
| GTGATGAATCATATAGTTGC+TGG | - | chr4_3:59753981-59754000 | Msa0652050:CDS | 35.0% | |
| CACACAGAAACAGAAAAATC+AGG | + | chr4_3:59754121-59754140 | None:intergenic | 35.0% | |
| AGTCAAAATAGGACATCTCA+TGG | + | chr4_3:59754230-59754249 | None:intergenic | 35.0% | |
| AGATTTAGAGACCAAATGTC+AGG | - | chr4_3:59754668-59754687 | Msa0652050:intron | 35.0% | |
| TAGTTGAAGGCTAGTACAAT+AGG | + | chr4_3:59754786-59754805 | None:intergenic | 35.0% | |
| CAGATGTTCTTAGAAACACA+AGG | - | chr4_3:59754810-59754829 | Msa0652050:intron | 35.0% | |
| TAAAAGATTGTGGAGAGGAA+TGG | + | chr4_3:59754890-59754909 | None:intergenic | 35.0% | |
| TTCTGTAAAAGATTGTGGAG+AGG | + | chr4_3:59754895-59754914 | None:intergenic | 35.0% | |
| ! | TCTCCACAATCTTTTACAGA+AGG | - | chr4_3:59754894-59754913 | Msa0652050:intron | 35.0% |
| ACTCCTTCTGTAAAAGATTG+TGG | + | chr4_3:59754900-59754919 | None:intergenic | 35.0% | |
| TACTAAGCTTCTTAGATCCA+TGG | - | chr4_3:59755152-59755171 | Msa0652050:intron | 35.0% | |
| ACTAAGCTTCTTAGATCCAT+GGG | - | chr4_3:59755153-59755172 | Msa0652050:intron | 35.0% | |
| ! | AGGCTAGTTATGGATATGAA+TGG | - | chr4_3:59755293-59755312 | Msa0652050:CDS | 35.0% |
| GAAGTTTGGTTGAAGAAGTT+GGG | + | chr4_3:59753729-59753748 | None:intergenic | 35.0% | |
| GATTATTGTTCGGTACTTGA+AGG | - | chr4_3:59753959-59753978 | Msa0652050:CDS | 35.0% | |
| GTGATGAATCATATAGTTGC+TGG | - | chr4_3:59753981-59754000 | Msa0652050:CDS | 35.0% | |
| CACACAGAAACAGAAAAATC+AGG | + | chr4_3:59754121-59754140 | None:intergenic | 35.0% | |
| AGTCAAAATAGGACATCTCA+TGG | + | chr4_3:59754230-59754249 | None:intergenic | 35.0% | |
| AGATTTAGAGACCAAATGTC+AGG | - | chr4_3:59754668-59754687 | Msa0652050:intron | 35.0% | |
| TAGTTGAAGGCTAGTACAAT+AGG | + | chr4_3:59754786-59754805 | None:intergenic | 35.0% | |
| CAGATGTTCTTAGAAACACA+AGG | - | chr4_3:59754810-59754829 | Msa0652050:intron | 35.0% | |
| TAAAAGATTGTGGAGAGGAA+TGG | + | chr4_3:59754890-59754909 | None:intergenic | 35.0% | |
| TTCTGTAAAAGATTGTGGAG+AGG | + | chr4_3:59754895-59754914 | None:intergenic | 35.0% | |
| ! | TCTCCACAATCTTTTACAGA+AGG | - | chr4_3:59754894-59754913 | Msa0652050:intron | 35.0% |
| ACTCCTTCTGTAAAAGATTG+TGG | + | chr4_3:59754900-59754919 | None:intergenic | 35.0% | |
| TACTAAGCTTCTTAGATCCA+TGG | - | chr4_3:59755152-59755171 | Msa0652050:intron | 35.0% | |
| ACTAAGCTTCTTAGATCCAT+GGG | - | chr4_3:59755153-59755172 | Msa0652050:intron | 35.0% | |
| ! | AGGCTAGTTATGGATATGAA+TGG | - | chr4_3:59755293-59755312 | Msa0652050:CDS | 35.0% |
| TTGCGATGAAGAAACAGAGA+AGG | + | chr4_3:59753706-59753725 | None:intergenic | 40.0% | |
| GGAAGTTTGGTTGAAGAAGT+TGG | + | chr4_3:59753730-59753749 | None:intergenic | 40.0% | |
| CAAGCTTAGGAATGAAAGGT+TGG | + | chr4_3:59753783-59753802 | None:intergenic | 40.0% | |
| GGTTCAAGCTTAGGAATGAA+AGG | + | chr4_3:59753787-59753806 | None:intergenic | 40.0% | |
| !! | TCAAGTTTGGTTCGGCTAAA+AGG | + | chr4_3:59753808-59753827 | None:intergenic | 40.0% |
| TTTAGCGACTCTGTCAAGTT+TGG | + | chr4_3:59753821-59753840 | None:intergenic | 40.0% | |
| TGAATCATATAGTTGCTGGC+AGG | - | chr4_3:59753985-59754004 | Msa0652050:CDS | 40.0% | |
| GAGAGGCTGATTATTGAGAT+TGG | - | chr4_3:59754937-59754956 | Msa0652050:intron | 40.0% | |
| AGGCTGATTATTGAGATTGG+TGG | - | chr4_3:59754940-59754959 | Msa0652050:intron | 40.0% | |
| AATGTTTGTCCTAGACCAGA+TGG | - | chr4_3:59755066-59755085 | Msa0652050:CDS | 40.0% | |
| ! | TTTGGTAATCCATCTGGTCT+AGG | + | chr4_3:59755078-59755097 | None:intergenic | 40.0% |
| !! | GCAGATTTTGGTAATCCATC+TGG | + | chr4_3:59755084-59755103 | None:intergenic | 40.0% |
| CATCAATCTGTTTCATGGTC+TGG | + | chr4_3:59755207-59755226 | None:intergenic | 40.0% | |
| GATGTGAATGTGTTAGTCGT+AGG | - | chr4_3:59755273-59755292 | Msa0652050:CDS | 40.0% | |
| ! | TGTTAGTCGTAGGCTAGTTA+TGG | - | chr4_3:59755283-59755302 | Msa0652050:CDS | 40.0% |
| TTGCGATGAAGAAACAGAGA+AGG | + | chr4_3:59753706-59753725 | None:intergenic | 40.0% | |
| GGAAGTTTGGTTGAAGAAGT+TGG | + | chr4_3:59753730-59753749 | None:intergenic | 40.0% | |
| CAAGCTTAGGAATGAAAGGT+TGG | + | chr4_3:59753783-59753802 | None:intergenic | 40.0% | |
| GGTTCAAGCTTAGGAATGAA+AGG | + | chr4_3:59753787-59753806 | None:intergenic | 40.0% | |
| !! | TCAAGTTTGGTTCGGCTAAA+AGG | + | chr4_3:59753808-59753827 | None:intergenic | 40.0% |
| TTTAGCGACTCTGTCAAGTT+TGG | + | chr4_3:59753821-59753840 | None:intergenic | 40.0% | |
| TGAATCATATAGTTGCTGGC+AGG | - | chr4_3:59753985-59754004 | Msa0652050:CDS | 40.0% | |
| GAGAGGCTGATTATTGAGAT+TGG | - | chr4_3:59754937-59754956 | Msa0652050:intron | 40.0% | |
| AGGCTGATTATTGAGATTGG+TGG | - | chr4_3:59754940-59754959 | Msa0652050:intron | 40.0% | |
| AATGTTTGTCCTAGACCAGA+TGG | - | chr4_3:59755066-59755085 | Msa0652050:CDS | 40.0% | |
| ! | TTTGGTAATCCATCTGGTCT+AGG | + | chr4_3:59755078-59755097 | None:intergenic | 40.0% |
| !! | GCAGATTTTGGTAATCCATC+TGG | + | chr4_3:59755084-59755103 | None:intergenic | 40.0% |
| CATCAATCTGTTTCATGGTC+TGG | + | chr4_3:59755207-59755226 | None:intergenic | 40.0% | |
| GATGTGAATGTGTTAGTCGT+AGG | - | chr4_3:59755273-59755292 | Msa0652050:CDS | 40.0% | |
| ! | TGTTAGTCGTAGGCTAGTTA+TGG | - | chr4_3:59755283-59755302 | Msa0652050:CDS | 40.0% |
| CGGCTAAAAGGTTCAAGCTT+AGG | + | chr4_3:59753796-59753815 | None:intergenic | 45.0% | |
| CGACTCTGTCAAGTTTGGTT+CGG | + | chr4_3:59753816-59753835 | None:intergenic | 45.0% | |
| CACCTAAAGCAGAGATAGAG+AGG | - | chr4_3:59754920-59754939 | Msa0652050:intron | 45.0% | |
| AGCCTCTCTATCTCTGCTTT+AGG | + | chr4_3:59754925-59754944 | None:intergenic | 45.0% | |
| CGGCTAAAAGGTTCAAGCTT+AGG | + | chr4_3:59753796-59753815 | None:intergenic | 45.0% | |
| CGACTCTGTCAAGTTTGGTT+CGG | + | chr4_3:59753816-59753835 | None:intergenic | 45.0% | |
| CACCTAAAGCAGAGATAGAG+AGG | - | chr4_3:59754920-59754939 | Msa0652050:intron | 45.0% | |
| AGCCTCTCTATCTCTGCTTT+AGG | + | chr4_3:59754925-59754944 | None:intergenic | 45.0% | |
| !! | ACATAAAAAAAAATAAAATA+TGG | - | chr4_3:59754392-59754411 | Msa0652050:intron | 5.0% |
| !! | ACATAAAAAAAAATAAAATA+TGG | - | chr4_3:59754392-59754411 | Msa0652050:intron | 5.0% |
| GGTGCTTCAGAATACCATGC+AGG | + | chr4_3:59755186-59755205 | None:intergenic | 50.0% | |
| GGTGCTTCAGAATACCATGC+AGG | + | chr4_3:59755186-59755205 | None:intergenic | 50.0% | |
| CCATGCAGGTGACTTTCCCA+TGG | + | chr4_3:59755172-59755191 | None:intergenic | 55.0% | |
| CCATGGGAAAGTCACCTGCA+TGG | - | chr4_3:59755169-59755188 | Msa0652050:intron | 55.0% | |
| CCATGCAGGTGACTTTCCCA+TGG | + | chr4_3:59755172-59755191 | None:intergenic | 55.0% | |
| CCATGGGAAAGTCACCTGCA+TGG | - | chr4_3:59755169-59755188 | Msa0652050:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 59753679 | 59755386 | 59753679 | ID=Msa0652050;Name=Msa0652050 |
| chr4_3 | mRNA | 59753679 | 59755386 | 59753679 | ID=Msa0652050-mRNA-1;Parent=Msa0652050;Name=Msa0652050-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.66|1|1|1|3|162|195 |
| chr4_3 | exon | 59753679 | 59754152 | 59753679 | ID=Msa0652050-mRNA-1:exon:16043;Parent=Msa0652050-mRNA-1 |
| chr4_3 | exon | 59755032 | 59755105 | 59755032 | ID=Msa0652050-mRNA-1:exon:16042;Parent=Msa0652050-mRNA-1 |
| chr4_3 | exon | 59755185 | 59755386 | 59755185 | ID=Msa0652050-mRNA-1:exon:16041;Parent=Msa0652050-mRNA-1 |
| chr4_3 | CDS | 59755185 | 59755386 | 59755185 | ID=Msa0652050-mRNA-1:cds;Parent=Msa0652050-mRNA-1 |
| chr4_3 | CDS | 59755032 | 59755105 | 59755032 | ID=Msa0652050-mRNA-1:cds;Parent=Msa0652050-mRNA-1 |
| chr4_3 | CDS | 59753841 | 59754152 | 59753841 | ID=Msa0652050-mRNA-1:cds;Parent=Msa0652050-mRNA-1 |
| chr4_3 | three_prime_UTR | 59753679 | 59753840 | 59753679 | ID=Msa0652050-mRNA-1:three_prime_utr;Parent=Msa0652050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
