Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556520 | XP_003608052.1 | 90.000 | 200 | 11 | 4 | 1 | 195 | 1 | 196 | 3.72e-119 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556520 | sp|Q9XIM0|MEE14_ARATH | 59.884 | 172 | 63 | 3 | 27 | 195 | 35 | 203 | 2.23e-64 | 200 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556520 | G7JNK2 | 90.000 | 200 | 11 | 4 | 1 | 195 | 1 | 196 | 1.78e-119 | 346 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0423130 | Msa0556520 | -0.802986 | 4.324562e-49 | -8.615850e-47 |
| Msa0334300 | Msa0556520 | 0.801412 | 9.115137e-49 | -8.615850e-47 |
| Msa0556520 | Msa0611890 | 0.831098 | 2.023519e-55 | -8.615850e-47 |
| Msa0556520 | Msa0646580 | 0.805428 | 1.341078e-49 | -8.615850e-47 |
| Msa0556520 | Msa0652050 | 0.989876 | 4.802950e-180 | -8.615850e-47 |
| Msa0556520 | Msa0694610 | 0.890012 | 1.446321e-73 | -8.615850e-47 |
| Msa0556520 | Msa0867730 | 0.803935 | 2.749446e-49 | -8.615850e-47 |
| Msa0556520 | Msa1130820 | -0.818878 | 1.557922e-52 | -8.615850e-47 |
| Msa0556520 | Msa1406670 | -0.812083 | 5.068149e-51 | -8.615850e-47 |
| Msa0556520 | Msa1448870 | -0.813150 | 2.960620e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556520 | MtrunA17_Chr4g0045491 | 90.000 | 200 | 11 | 4 | 1 | 195 | 1 | 196 | 3.42e-123 | 346 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556520 | AT2G15890.1 | 59.884 | 172 | 63 | 3 | 27 | 195 | 35 | 203 | 2.27e-65 | 200 |
| Msa0556520 | AT2G15890.2 | 51.479 | 169 | 54 | 3 | 27 | 195 | 35 | 175 | 1.36e-49 | 159 |
Find 42 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCATTTCATCAGCAGATTT+TGG | 0.193138 | 4_1:+54761714 | None:intergenic |
| TCAAGTTTGGTTCGGCTAAA+AGG | 0.273045 | 4_1:+54763002 | None:intergenic |
| GGTGGTGTAAAATCTTTAAT+AGG | 0.274831 | 4_1:-54761849 | Msa0556520:CDS |
| TTCTTCTGAATTTATTTCAT+TGG | 0.320099 | 4_1:+54761770 | None:intergenic |
| AATAATGGAAGAAGGAAGTT+TGG | 0.327631 | 4_1:+54763067 | None:intergenic |
| GGAAGTTTGGTTGAAGAAGT+TGG | 0.331092 | 4_1:+54763080 | None:intergenic |
| TTATGGATATGAATGGATTA+TGG | 0.345399 | 4_1:-54761507 | Msa0556520:three_prime_UTR |
| TCTAGAAGAACAACAAATAA+TGG | 0.365979 | 4_1:+54763052 | None:intergenic |
| AGCCTCTCTATCTCTGCTTT+AGG | 0.377284 | 4_1:+54761885 | None:intergenic |
| ATAATCATCAATCTGTTTCA+TGG | 0.378464 | 4_1:+54761598 | None:intergenic |
| GAGAGGCTGATTATTGAGAT+TGG | 0.379912 | 4_1:-54761870 | Msa0556520:CDS |
| AAAATCTGAGAAAGATCTCT+TGG | 0.387196 | 4_1:-54762949 | Msa0556520:CDS |
| CGACTCTGTCAAGTTTGGTT+CGG | 0.395191 | 4_1:+54762994 | None:intergenic |
| CATCAATCTGTTTCATGGTC+TGG | 0.409270 | 4_1:+54761603 | None:intergenic |
| GAAGTTTGGTTGAAGAAGTT+GGG | 0.409888 | 4_1:+54763081 | None:intergenic |
| CGGCTAAAAGGTTCAAGCTT+AGG | 0.425055 | 4_1:+54763014 | None:intergenic |
| TTTAGCGACTCTGTCAAGTT+TGG | 0.428057 | 4_1:+54762989 | None:intergenic |
| TTTCTTTCTTTCTTTCACTT+TGG | 0.432490 | 4_1:-54761460 | Msa0556520:three_prime_UTR |
| GTGATGAATCATATAGTTGC+TGG | 0.434059 | 4_1:-54762826 | Msa0556520:CDS |
| AGCTTAGTATATGATGAATC+AGG | 0.449951 | 4_1:+54761669 | None:intergenic |
| TGTTAGTCGTAGGCTAGTTA+TGG | 0.464659 | 4_1:-54761524 | Msa0556520:three_prime_UTR |
| TTTGGTAATCCATCTGGTCT+AGG | 0.470690 | 4_1:+54761732 | None:intergenic |
| TTGTTTGGTAGATTATTGTT+CGG | 0.474583 | 4_1:-54762858 | Msa0556520:intron |
| TACTAAGCTTCTTAGATCCA+TGG | 0.476278 | 4_1:-54761655 | Msa0556520:CDS |
| CAAGCTTAGGAATGAAAGGT+TGG | 0.486187 | 4_1:+54763027 | None:intergenic |
| AAAATCTGCTGATGAAATGA+TGG | 0.503481 | 4_1:-54761712 | Msa0556520:CDS |
| AAATCTGAGAAAGATCTCTT+GGG | 0.506201 | 4_1:-54762948 | Msa0556520:intron |
| GGTTCAAGCTTAGGAATGAA+AGG | 0.526887 | 4_1:+54763023 | None:intergenic |
| AGGCTAGTTATGGATATGAA+TGG | 0.531243 | 4_1:-54761514 | Msa0556520:three_prime_UTR |
| GATTATTGTTCGGTACTTGA+AGG | 0.537788 | 4_1:-54762848 | Msa0556520:CDS |
| GAACAACAAATAATGGAAGA+AGG | 0.539572 | 4_1:+54763059 | None:intergenic |
| CACCTAAAGCAGAGATAGAG+AGG | 0.546613 | 4_1:-54761887 | Msa0556520:CDS |
| ACTAAGCTTCTTAGATCCAT+GGG | 0.550589 | 4_1:-54761654 | Msa0556520:CDS |
| AATGTTTGTCCTAGACCAGA+TGG | 0.557161 | 4_1:-54761741 | Msa0556520:CDS |
| TGAATCATATAGTTGCTGGC+AGG | 0.600681 | 4_1:-54762822 | Msa0556520:CDS |
| TTGCGATGAAGAAACAGAGA+AGG | 0.609056 | 4_1:+54763104 | None:intergenic |
| CCATGCAGGTGACTTTCCCA+TGG | 0.612938 | 4_1:+54761638 | None:intergenic |
| GGTGCTTCAGAATACCATGC+AGG | 0.623000 | 4_1:+54761624 | None:intergenic |
| AGGCTGATTATTGAGATTGG+TGG | 0.626912 | 4_1:-54761867 | Msa0556520:CDS |
| CCATGGGAAAGTCACCTGCA+TGG | 0.641511 | 4_1:-54761638 | Msa0556520:CDS |
| TCTTTAATAGGATGTTTACA+CGG | 0.646922 | 4_1:-54761837 | Msa0556520:CDS |
| GATGTGAATGTGTTAGTCGT+AGG | 0.664341 | 4_1:-54761534 | Msa0556520:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAAAAAAAAAAAATA+TGG | - | chr4_1:54762156-54762175 | Msa0556520:intron | 0.0% |
| !! | ATAAAAAAAAAAAAAAAATA+TGG | - | chr4_1:54762156-54762175 | Msa0556520:intron | 0.0% |
| !!! | TTATTTATGTTATTTGATTT+TGG | - | chr4_1:54761681-54761700 | Msa0556520:CDS | 10.0% |
| !! | TTTAAAAATAGAAACAAATT+TGG | + | chr4_1:54761937-54761956 | None:intergenic | 10.0% |
| !!! | ATTCATATTTTTATGTTAAA+AGG | + | chr4_1:54762132-54762151 | None:intergenic | 10.0% |
| !!! | TATATGTATTTTTGTTTATA+GGG | - | chr4_1:54763004-54763023 | Msa0556520:CDS | 10.0% |
| !!! | TTATTTATGTTATTTGATTT+TGG | - | chr4_1:54761681-54761700 | Msa0556520:CDS | 10.0% |
| !! | TTTAAAAATAGAAACAAATT+TGG | + | chr4_1:54761937-54761956 | None:intergenic | 10.0% |
| !!! | ATTCATATTTTTATGTTAAA+AGG | + | chr4_1:54762132-54762151 | None:intergenic | 10.0% |
| !!! | TATATGTATTTTTGTTTATA+GGG | - | chr4_1:54763004-54763023 | Msa0556520:CDS | 10.0% |
| !! | AAAATTAAATGAATAACAAC+AGG | + | chr4_1:54761833-54761852 | None:intergenic | 15.0% |
| !!! | ATTTTTAAATTCACAAAGAA+TGG | - | chr4_1:54761948-54761967 | Msa0556520:intron | 15.0% |
| !!! | CTATTTTTTCATCAAAAAAT+TGG | + | chr4_1:54762356-54762375 | None:intergenic | 15.0% |
| !!! | CAATTTTTTGATGAAAAAAT+AGG | - | chr4_1:54762354-54762373 | Msa0556520:intron | 15.0% |
| !! | AATATTTAAGCATAATTAAG+GGG | + | chr4_1:54762610-54762629 | None:intergenic | 15.0% |
| !! | GAATATTTAAGCATAATTAA+GGG | + | chr4_1:54762611-54762630 | None:intergenic | 15.0% |
| !! | TGAATATTTAAGCATAATTA+AGG | + | chr4_1:54762612-54762631 | None:intergenic | 15.0% |
| !!! | CTATATGTATTTTTGTTTAT+AGG | - | chr4_1:54763003-54763022 | Msa0556520:CDS | 15.0% |
| !! | AAAATTAAATGAATAACAAC+AGG | + | chr4_1:54761833-54761852 | None:intergenic | 15.0% |
| !!! | ATTTTTAAATTCACAAAGAA+TGG | - | chr4_1:54761948-54761967 | Msa0556520:intron | 15.0% |
| !!! | CTATTTTTTCATCAAAAAAT+TGG | + | chr4_1:54762356-54762375 | None:intergenic | 15.0% |
| !!! | CAATTTTTTGATGAAAAAAT+AGG | - | chr4_1:54762354-54762373 | Msa0556520:intron | 15.0% |
| !! | AATATTTAAGCATAATTAAG+GGG | + | chr4_1:54762610-54762629 | None:intergenic | 15.0% |
| !! | GAATATTTAAGCATAATTAA+GGG | + | chr4_1:54762611-54762630 | None:intergenic | 15.0% |
| !! | TGAATATTTAAGCATAATTA+AGG | + | chr4_1:54762612-54762631 | None:intergenic | 15.0% |
| !!! | CTATATGTATTTTTGTTTAT+AGG | - | chr4_1:54763003-54763022 | Msa0556520:CDS | 15.0% |
| !!! | TTTTGGTTTATGATTTTGTT+TGG | - | chr4_1:54761698-54761717 | Msa0556520:CDS | 20.0% |
| !! | TAAAACAAGTGAGAAAATTA+AGG | - | chr4_1:54762067-54762086 | Msa0556520:intron | 20.0% |
| !! | AATCTAACAAAATTTCATGA+TGG | + | chr4_1:54762417-54762436 | None:intergenic | 20.0% |
| !!! | ACTTTCATTTGTTTGTTTTT+TGG | - | chr4_1:54762480-54762499 | Msa0556520:intron | 20.0% |
| !! | TTCTTCTGAATTTATTTCAT+TGG | + | chr4_1:54762804-54762823 | None:intergenic | 20.0% |
| !!! | TTTTGGTTTATGATTTTGTT+TGG | - | chr4_1:54761698-54761717 | Msa0556520:CDS | 20.0% |
| !! | TAAAACAAGTGAGAAAATTA+AGG | - | chr4_1:54762067-54762086 | Msa0556520:intron | 20.0% |
| !! | AATCTAACAAAATTTCATGA+TGG | + | chr4_1:54762417-54762436 | None:intergenic | 20.0% |
| !!! | ACTTTCATTTGTTTGTTTTT+TGG | - | chr4_1:54762480-54762499 | Msa0556520:intron | 20.0% |
| !! | TTCTTCTGAATTTATTTCAT+TGG | + | chr4_1:54762804-54762823 | None:intergenic | 20.0% |
| ! | TCTAGAAGAACAACAAATAA+TGG | + | chr4_1:54761522-54761541 | None:intergenic | 25.0% |
| !!! | TTCTCAGATTTTTCAATCAA+AGG | + | chr4_1:54761614-54761633 | None:intergenic | 25.0% |
| ! | ACACGAAATAAGAAAGAAAA+CGG | + | chr4_1:54761655-54761674 | None:intergenic | 25.0% |
| ! | TTGTTTGGTAGATTATTGTT+CGG | - | chr4_1:54761713-54761732 | Msa0556520:CDS | 25.0% |
| ! | TAGTCACATATAGTCAAAAT+AGG | + | chr4_1:54762003-54762022 | None:intergenic | 25.0% |
| ! | AAATTATATAGCCTGACATT+TGG | + | chr4_1:54762446-54762465 | None:intergenic | 25.0% |
| ! | TCTTTAATAGGATGTTTACA+CGG | - | chr4_1:54762734-54762753 | Msa0556520:intron | 25.0% |
| ! | ATAATCATCAATCTGTTTCA+TGG | + | chr4_1:54762976-54762995 | None:intergenic | 25.0% |
| !!! | ATGTATTTTTGTTTATAGGG+AGG | - | chr4_1:54763007-54763026 | Msa0556520:CDS | 25.0% |
| !!! | TGTATTTTTGTTTATAGGGA+GGG | - | chr4_1:54763008-54763027 | Msa0556520:CDS | 25.0% |
| !!! | TTATGGATATGAATGGATTA+TGG | - | chr4_1:54763064-54763083 | Msa0556520:CDS | 25.0% |
| ! | TTTCTTTCTTTCTTTCACTT+TGG | - | chr4_1:54763111-54763130 | Msa0556520:CDS | 25.0% |
| ! | TCTAGAAGAACAACAAATAA+TGG | + | chr4_1:54761522-54761541 | None:intergenic | 25.0% |
| !!! | TTCTCAGATTTTTCAATCAA+AGG | + | chr4_1:54761614-54761633 | None:intergenic | 25.0% |
| ! | ACACGAAATAAGAAAGAAAA+CGG | + | chr4_1:54761655-54761674 | None:intergenic | 25.0% |
| ! | TTGTTTGGTAGATTATTGTT+CGG | - | chr4_1:54761713-54761732 | Msa0556520:CDS | 25.0% |
| ! | TAGTCACATATAGTCAAAAT+AGG | + | chr4_1:54762003-54762022 | None:intergenic | 25.0% |
| ! | AAATTATATAGCCTGACATT+TGG | + | chr4_1:54762446-54762465 | None:intergenic | 25.0% |
| ! | TCTTTAATAGGATGTTTACA+CGG | - | chr4_1:54762734-54762753 | Msa0556520:intron | 25.0% |
| ! | ATAATCATCAATCTGTTTCA+TGG | + | chr4_1:54762976-54762995 | None:intergenic | 25.0% |
| !!! | ATGTATTTTTGTTTATAGGG+AGG | - | chr4_1:54763007-54763026 | Msa0556520:CDS | 25.0% |
| !!! | TGTATTTTTGTTTATAGGGA+GGG | - | chr4_1:54763008-54763027 | Msa0556520:CDS | 25.0% |
| !!! | TTATGGATATGAATGGATTA+TGG | - | chr4_1:54763064-54763083 | Msa0556520:CDS | 25.0% |
| ! | TTTCTTTCTTTCTTTCACTT+TGG | - | chr4_1:54763111-54763130 | Msa0556520:CDS | 25.0% |
| ! | AATAATGGAAGAAGGAAGTT+TGG | + | chr4_1:54761507-54761526 | None:intergenic | 30.0% |
| ! | GAACAACAAATAATGGAAGA+AGG | + | chr4_1:54761515-54761534 | None:intergenic | 30.0% |
| !! | CAGATTTTTCAATCAAAGGA+AGG | + | chr4_1:54761610-54761629 | None:intergenic | 30.0% |
| AAAATCTGAGAAAGATCTCT+TGG | - | chr4_1:54761622-54761641 | Msa0556520:CDS | 30.0% | |
| AAATCTGAGAAAGATCTCTT+GGG | - | chr4_1:54761623-54761642 | Msa0556520:CDS | 30.0% | |
| ! | TCTTCTTTGTTTGAGAGATT+TGG | - | chr4_1:54761852-54761871 | Msa0556520:CDS | 30.0% |
| ACACAGAAACAGAAAAATCA+GGG | + | chr4_1:54761884-54761903 | None:intergenic | 30.0% | |
| GAAACAAATTTGGTCAAGAA+AGG | + | chr4_1:54761927-54761946 | None:intergenic | 30.0% | |
| ATGTGACTATAGATAGAACA+TGG | - | chr4_1:54762014-54762033 | Msa0556520:intron | 30.0% | |
| ! | ATCATTGATGTGTTGATCTT+AGG | - | chr4_1:54762274-54762293 | Msa0556520:intron | 30.0% |
| GAACATCTGTTTATAGTTGA+AGG | + | chr4_1:54762563-54762582 | None:intergenic | 30.0% | |
| TAGAAACACAAGGAATTCAT+TGG | - | chr4_1:54762584-54762603 | Msa0556520:intron | 30.0% | |
| GGTGGTGTAAAATCTTTAAT+AGG | - | chr4_1:54762722-54762741 | Msa0556520:intron | 30.0% | |
| ATGCGTAAACTGAAAAAGAA+TGG | - | chr4_1:54762767-54762786 | Msa0556520:intron | 30.0% | |
| ! | ATCATTTCATCAGCAGATTT+TGG | + | chr4_1:54762860-54762879 | None:intergenic | 30.0% |
| AAAATCTGCTGATGAAATGA+TGG | - | chr4_1:54762859-54762878 | Msa0556520:intron | 30.0% | |
| AGCTTAGTATATGATGAATC+AGG | + | chr4_1:54762905-54762924 | None:intergenic | 30.0% | |
| ! | AATAATGGAAGAAGGAAGTT+TGG | + | chr4_1:54761507-54761526 | None:intergenic | 30.0% |
| ! | GAACAACAAATAATGGAAGA+AGG | + | chr4_1:54761515-54761534 | None:intergenic | 30.0% |
| !! | CAGATTTTTCAATCAAAGGA+AGG | + | chr4_1:54761610-54761629 | None:intergenic | 30.0% |
| AAAATCTGAGAAAGATCTCT+TGG | - | chr4_1:54761622-54761641 | Msa0556520:CDS | 30.0% | |
| AAATCTGAGAAAGATCTCTT+GGG | - | chr4_1:54761623-54761642 | Msa0556520:CDS | 30.0% | |
| ! | TCTTCTTTGTTTGAGAGATT+TGG | - | chr4_1:54761852-54761871 | Msa0556520:CDS | 30.0% |
| ACACAGAAACAGAAAAATCA+GGG | + | chr4_1:54761884-54761903 | None:intergenic | 30.0% | |
| GAAACAAATTTGGTCAAGAA+AGG | + | chr4_1:54761927-54761946 | None:intergenic | 30.0% | |
| ATGTGACTATAGATAGAACA+TGG | - | chr4_1:54762014-54762033 | Msa0556520:intron | 30.0% | |
| ! | ATCATTGATGTGTTGATCTT+AGG | - | chr4_1:54762274-54762293 | Msa0556520:intron | 30.0% |
| GAACATCTGTTTATAGTTGA+AGG | + | chr4_1:54762563-54762582 | None:intergenic | 30.0% | |
| TAGAAACACAAGGAATTCAT+TGG | - | chr4_1:54762584-54762603 | Msa0556520:intron | 30.0% | |
| GGTGGTGTAAAATCTTTAAT+AGG | - | chr4_1:54762722-54762741 | Msa0556520:intron | 30.0% | |
| ATGCGTAAACTGAAAAAGAA+TGG | - | chr4_1:54762767-54762786 | Msa0556520:intron | 30.0% | |
| ! | ATCATTTCATCAGCAGATTT+TGG | + | chr4_1:54762860-54762879 | None:intergenic | 30.0% |
| AAAATCTGCTGATGAAATGA+TGG | - | chr4_1:54762859-54762878 | Msa0556520:intron | 30.0% | |
| AGCTTAGTATATGATGAATC+AGG | + | chr4_1:54762905-54762924 | None:intergenic | 30.0% | |
| GAAGTTTGGTTGAAGAAGTT+GGG | + | chr4_1:54761493-54761512 | None:intergenic | 35.0% | |
| GATTATTGTTCGGTACTTGA+AGG | - | chr4_1:54761723-54761742 | Msa0556520:CDS | 35.0% | |
| GTGATGAATCATATAGTTGC+TGG | - | chr4_1:54761745-54761764 | Msa0556520:CDS | 35.0% | |
| CACACAGAAACAGAAAAATC+AGG | + | chr4_1:54761885-54761904 | None:intergenic | 35.0% | |
| AGTCAAAATAGGACATCTCA+TGG | + | chr4_1:54761992-54762011 | None:intergenic | 35.0% | |
| AGATTTAGAGACCAAATGTC+AGG | - | chr4_1:54762432-54762451 | Msa0556520:intron | 35.0% | |
| TAGTTGAAGGCTAGTACAAT+AGG | + | chr4_1:54762550-54762569 | None:intergenic | 35.0% | |
| CAGATGTTCTTAGAAACACA+AGG | - | chr4_1:54762574-54762593 | Msa0556520:intron | 35.0% | |
| TAAAAGATTGTGGAGAGGAA+TGG | + | chr4_1:54762654-54762673 | None:intergenic | 35.0% | |
| TTCTGTAAAAGATTGTGGAG+AGG | + | chr4_1:54762659-54762678 | None:intergenic | 35.0% | |
| ! | TCTCCACAATCTTTTACAGA+AGG | - | chr4_1:54762658-54762677 | Msa0556520:intron | 35.0% |
| ACTCCTTCTGTAAAAGATTG+TGG | + | chr4_1:54762664-54762683 | None:intergenic | 35.0% | |
| TACTAAGCTTCTTAGATCCA+TGG | - | chr4_1:54762916-54762935 | Msa0556520:intron | 35.0% | |
| ACTAAGCTTCTTAGATCCAT+GGG | - | chr4_1:54762917-54762936 | Msa0556520:intron | 35.0% | |
| ! | AGGCTAGTTATGGATATGAA+TGG | - | chr4_1:54763057-54763076 | Msa0556520:CDS | 35.0% |
| GAAGTTTGGTTGAAGAAGTT+GGG | + | chr4_1:54761493-54761512 | None:intergenic | 35.0% | |
| GATTATTGTTCGGTACTTGA+AGG | - | chr4_1:54761723-54761742 | Msa0556520:CDS | 35.0% | |
| GTGATGAATCATATAGTTGC+TGG | - | chr4_1:54761745-54761764 | Msa0556520:CDS | 35.0% | |
| CACACAGAAACAGAAAAATC+AGG | + | chr4_1:54761885-54761904 | None:intergenic | 35.0% | |
| AGTCAAAATAGGACATCTCA+TGG | + | chr4_1:54761992-54762011 | None:intergenic | 35.0% | |
| AGATTTAGAGACCAAATGTC+AGG | - | chr4_1:54762432-54762451 | Msa0556520:intron | 35.0% | |
| TAGTTGAAGGCTAGTACAAT+AGG | + | chr4_1:54762550-54762569 | None:intergenic | 35.0% | |
| CAGATGTTCTTAGAAACACA+AGG | - | chr4_1:54762574-54762593 | Msa0556520:intron | 35.0% | |
| TAAAAGATTGTGGAGAGGAA+TGG | + | chr4_1:54762654-54762673 | None:intergenic | 35.0% | |
| TTCTGTAAAAGATTGTGGAG+AGG | + | chr4_1:54762659-54762678 | None:intergenic | 35.0% | |
| ! | TCTCCACAATCTTTTACAGA+AGG | - | chr4_1:54762658-54762677 | Msa0556520:intron | 35.0% |
| ACTCCTTCTGTAAAAGATTG+TGG | + | chr4_1:54762664-54762683 | None:intergenic | 35.0% | |
| TACTAAGCTTCTTAGATCCA+TGG | - | chr4_1:54762916-54762935 | Msa0556520:intron | 35.0% | |
| ACTAAGCTTCTTAGATCCAT+GGG | - | chr4_1:54762917-54762936 | Msa0556520:intron | 35.0% | |
| ! | AGGCTAGTTATGGATATGAA+TGG | - | chr4_1:54763057-54763076 | Msa0556520:CDS | 35.0% |
| TTGCGATGAAGAAACAGAGA+AGG | + | chr4_1:54761470-54761489 | None:intergenic | 40.0% | |
| GGAAGTTTGGTTGAAGAAGT+TGG | + | chr4_1:54761494-54761513 | None:intergenic | 40.0% | |
| CAAGCTTAGGAATGAAAGGT+TGG | + | chr4_1:54761547-54761566 | None:intergenic | 40.0% | |
| GGTTCAAGCTTAGGAATGAA+AGG | + | chr4_1:54761551-54761570 | None:intergenic | 40.0% | |
| !! | TCAAGTTTGGTTCGGCTAAA+AGG | + | chr4_1:54761572-54761591 | None:intergenic | 40.0% |
| TTTAGCGACTCTGTCAAGTT+TGG | + | chr4_1:54761585-54761604 | None:intergenic | 40.0% | |
| TGAATCATATAGTTGCTGGC+AGG | - | chr4_1:54761749-54761768 | Msa0556520:CDS | 40.0% | |
| GAGAGGCTGATTATTGAGAT+TGG | - | chr4_1:54762701-54762720 | Msa0556520:intron | 40.0% | |
| AGGCTGATTATTGAGATTGG+TGG | - | chr4_1:54762704-54762723 | Msa0556520:intron | 40.0% | |
| AATGTTTGTCCTAGACCAGA+TGG | - | chr4_1:54762830-54762849 | Msa0556520:CDS | 40.0% | |
| ! | TTTGGTAATCCATCTGGTCT+AGG | + | chr4_1:54762842-54762861 | None:intergenic | 40.0% |
| !! | GCAGATTTTGGTAATCCATC+TGG | + | chr4_1:54762848-54762867 | None:intergenic | 40.0% |
| CATCAATCTGTTTCATGGTC+TGG | + | chr4_1:54762971-54762990 | None:intergenic | 40.0% | |
| GATGTGAATGTGTTAGTCGT+AGG | - | chr4_1:54763037-54763056 | Msa0556520:CDS | 40.0% | |
| ! | TGTTAGTCGTAGGCTAGTTA+TGG | - | chr4_1:54763047-54763066 | Msa0556520:CDS | 40.0% |
| TTGCGATGAAGAAACAGAGA+AGG | + | chr4_1:54761470-54761489 | None:intergenic | 40.0% | |
| GGAAGTTTGGTTGAAGAAGT+TGG | + | chr4_1:54761494-54761513 | None:intergenic | 40.0% | |
| CAAGCTTAGGAATGAAAGGT+TGG | + | chr4_1:54761547-54761566 | None:intergenic | 40.0% | |
| GGTTCAAGCTTAGGAATGAA+AGG | + | chr4_1:54761551-54761570 | None:intergenic | 40.0% | |
| !! | TCAAGTTTGGTTCGGCTAAA+AGG | + | chr4_1:54761572-54761591 | None:intergenic | 40.0% |
| TTTAGCGACTCTGTCAAGTT+TGG | + | chr4_1:54761585-54761604 | None:intergenic | 40.0% | |
| TGAATCATATAGTTGCTGGC+AGG | - | chr4_1:54761749-54761768 | Msa0556520:CDS | 40.0% | |
| GAGAGGCTGATTATTGAGAT+TGG | - | chr4_1:54762701-54762720 | Msa0556520:intron | 40.0% | |
| AGGCTGATTATTGAGATTGG+TGG | - | chr4_1:54762704-54762723 | Msa0556520:intron | 40.0% | |
| AATGTTTGTCCTAGACCAGA+TGG | - | chr4_1:54762830-54762849 | Msa0556520:CDS | 40.0% | |
| ! | TTTGGTAATCCATCTGGTCT+AGG | + | chr4_1:54762842-54762861 | None:intergenic | 40.0% |
| !! | GCAGATTTTGGTAATCCATC+TGG | + | chr4_1:54762848-54762867 | None:intergenic | 40.0% |
| CATCAATCTGTTTCATGGTC+TGG | + | chr4_1:54762971-54762990 | None:intergenic | 40.0% | |
| GATGTGAATGTGTTAGTCGT+AGG | - | chr4_1:54763037-54763056 | Msa0556520:CDS | 40.0% | |
| ! | TGTTAGTCGTAGGCTAGTTA+TGG | - | chr4_1:54763047-54763066 | Msa0556520:CDS | 40.0% |
| CGGCTAAAAGGTTCAAGCTT+AGG | + | chr4_1:54761560-54761579 | None:intergenic | 45.0% | |
| CGACTCTGTCAAGTTTGGTT+CGG | + | chr4_1:54761580-54761599 | None:intergenic | 45.0% | |
| CACCTAAAGCAGAGATAGAG+AGG | - | chr4_1:54762684-54762703 | Msa0556520:intron | 45.0% | |
| AGCCTCTCTATCTCTGCTTT+AGG | + | chr4_1:54762689-54762708 | None:intergenic | 45.0% | |
| CGGCTAAAAGGTTCAAGCTT+AGG | + | chr4_1:54761560-54761579 | None:intergenic | 45.0% | |
| CGACTCTGTCAAGTTTGGTT+CGG | + | chr4_1:54761580-54761599 | None:intergenic | 45.0% | |
| CACCTAAAGCAGAGATAGAG+AGG | - | chr4_1:54762684-54762703 | Msa0556520:intron | 45.0% | |
| AGCCTCTCTATCTCTGCTTT+AGG | + | chr4_1:54762689-54762708 | None:intergenic | 45.0% | |
| GGTGCTTCAGAATACCATGC+AGG | + | chr4_1:54762950-54762969 | None:intergenic | 50.0% | |
| GGTGCTTCAGAATACCATGC+AGG | + | chr4_1:54762950-54762969 | None:intergenic | 50.0% | |
| CCATGCAGGTGACTTTCCCA+TGG | + | chr4_1:54762936-54762955 | None:intergenic | 55.0% | |
| CCATGGGAAAGTCACCTGCA+TGG | - | chr4_1:54762933-54762952 | Msa0556520:intron | 55.0% | |
| CCATGCAGGTGACTTTCCCA+TGG | + | chr4_1:54762936-54762955 | None:intergenic | 55.0% | |
| CCATGGGAAAGTCACCTGCA+TGG | - | chr4_1:54762933-54762952 | Msa0556520:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 54761443 | 54763150 | 54761443 | ID=Msa0556520;Name=Msa0556520 |
| chr4_1 | mRNA | 54761443 | 54763150 | 54761443 | ID=Msa0556520-mRNA-1;Parent=Msa0556520;Name=Msa0556520-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.66|1|1|1|3|162|195 |
| chr4_1 | exon | 54761443 | 54761916 | 54761443 | ID=Msa0556520-mRNA-1:exon:16175;Parent=Msa0556520-mRNA-1 |
| chr4_1 | exon | 54762796 | 54762869 | 54762796 | ID=Msa0556520-mRNA-1:exon:16174;Parent=Msa0556520-mRNA-1 |
| chr4_1 | exon | 54762949 | 54763150 | 54762949 | ID=Msa0556520-mRNA-1:exon:16173;Parent=Msa0556520-mRNA-1 |
| chr4_1 | CDS | 54762949 | 54763150 | 54762949 | ID=Msa0556520-mRNA-1:cds;Parent=Msa0556520-mRNA-1 |
| chr4_1 | CDS | 54762796 | 54762869 | 54762796 | ID=Msa0556520-mRNA-1:cds;Parent=Msa0556520-mRNA-1 |
| chr4_1 | CDS | 54761605 | 54761916 | 54761605 | ID=Msa0556520-mRNA-1:cds;Parent=Msa0556520-mRNA-1 |
| chr4_1 | three_prime_UTR | 54761443 | 54761604 | 54761443 | ID=Msa0556520-mRNA-1:three_prime_utr;Parent=Msa0556520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
