Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295710 | XP_013464732.1 | 96.838 | 253 | 8 | 0 | 1 | 253 | 1 | 253 | 0.0 | 511 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295710 | sp|P24805|TSJT1_TOBAC | 40.940 | 149 | 87 | 1 | 1 | 149 | 1 | 148 | 2.13e-32 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295710 | B7FHV5 | 96.838 | 253 | 8 | 0 | 1 | 253 | 1 | 253 | 0.0 | 511 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0015930 | Msa0295710 | 0.819084 | 1.398564e-52 | -8.615850e-47 |
| Msa0156370 | Msa0295710 | 0.810046 | 1.400516e-50 | -8.615850e-47 |
| Msa0186540 | Msa0295710 | 0.838805 | 2.312338e-57 | -8.615850e-47 |
| Msa0216370 | Msa0295710 | 0.923031 | 4.533250e-89 | -8.615850e-47 |
| Msa0225720 | Msa0295710 | 0.801268 | 9.756425e-49 | -8.615850e-47 |
| Msa0256570 | Msa0295710 | 0.977150 | 3.296953e-143 | -8.615850e-47 |
| Msa0295710 | Msa0301260 | 0.811972 | 5.358140e-51 | -8.615850e-47 |
| Msa0295710 | Msa0334300 | 0.957041 | 7.041808e-115 | -8.615850e-47 |
| Msa0295710 | Msa0385740 | 0.849565 | 2.979570e-60 | -8.615850e-47 |
| Msa0295710 | Msa0420830 | 0.806865 | 6.684466e-50 | -8.615850e-47 |
| Msa0295710 | Msa0549530 | 0.841660 | 4.153532e-58 | -8.615850e-47 |
| Msa0295710 | Msa0550150 | 0.804404 | 2.195891e-49 | -8.615850e-47 |
| Msa0295710 | Msa0603230 | 0.828386 | 9.251590e-55 | -8.615850e-47 |
| Msa0295710 | Msa0611890 | 0.800975 | 1.119681e-48 | -8.615850e-47 |
| Msa0295710 | Msa0645880 | 0.849472 | 3.163295e-60 | -8.615850e-47 |
| Msa0295710 | Msa0652050 | 0.801216 | 9.996755e-49 | -8.615850e-47 |
| Msa0295710 | Msa0685730 | 0.843524 | 1.328626e-58 | -8.615850e-47 |
| Msa0295710 | Msa0713900 | -0.806658 | 7.391041e-50 | -8.615850e-47 |
| Msa0295710 | Msa0776560 | 0.850858 | 1.294063e-60 | -8.615850e-47 |
| Msa0295710 | Msa0859120 | 0.817623 | 2.995642e-52 | -8.615850e-47 |
| Msa0295710 | Msa0867730 | 0.818142 | 2.287213e-52 | -8.615850e-47 |
| Msa0295710 | Msa1250510 | 0.802123 | 6.513733e-49 | -8.615850e-47 |
| Msa0295710 | Msa1269440 | 0.882503 | 9.861675e-71 | -8.615850e-47 |
| Msa0295710 | Msa1335090 | 0.820520 | 6.566640e-53 | -8.615850e-47 |
| Msa0295710 | Msa1339020 | 0.819206 | 1.311571e-52 | -8.615850e-47 |
| Msa0295710 | Msa1420430 | 0.800989 | 1.112287e-48 | -8.615850e-47 |
| Msa0295710 | Msa1426890 | 0.800285 | 1.548106e-48 | -8.615850e-47 |
| Msa0295710 | Msa1435240 | 0.801006 | 1.103751e-48 | -8.615850e-47 |
| Msa0295710 | Msa1445370 | 0.801676 | 8.047732e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295710 | MtrunA17_Chr2g0317901 | 96.838 | 253 | 8 | 0 | 1 | 253 | 1 | 253 | 0.0 | 511 |
| Msa0295710 | MtrunA17_Chr2g0281901 | 65.600 | 250 | 85 | 1 | 1 | 250 | 1 | 249 | 8.34e-116 | 332 |
| Msa0295710 | MtrunA17_Chr4g0047531 | 60.558 | 251 | 98 | 1 | 1 | 250 | 64 | 314 | 1.57e-105 | 308 |
| Msa0295710 | MtrunA17_Chr1g0166351 | 47.012 | 251 | 124 | 4 | 1 | 247 | 1 | 246 | 5.10e-76 | 231 |
| Msa0295710 | MtrunA17_Chr1g0204611 | 47.222 | 252 | 122 | 5 | 1 | 247 | 1 | 246 | 1.12e-75 | 230 |
| Msa0295710 | MtrunA17_Chr2g0287871 | 40.948 | 232 | 130 | 5 | 1 | 230 | 1 | 227 | 1.38e-53 | 173 |
| Msa0295710 | MtrunA17_Chr4g0065571 | 39.056 | 233 | 134 | 6 | 1 | 230 | 1 | 228 | 7.52e-53 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0295710 | AT4G27450.1 | 78.226 | 248 | 53 | 1 | 1 | 247 | 1 | 248 | 8.92e-146 | 408 |
| Msa0295710 | AT3G15450.1 | 68.675 | 249 | 74 | 3 | 1 | 247 | 1 | 247 | 2.31e-124 | 353 |
| Msa0295710 | AT3G15450.2 | 66.839 | 193 | 60 | 3 | 1 | 191 | 1 | 191 | 3.99e-88 | 260 |
| Msa0295710 | AT5G43830.1 | 48.413 | 252 | 120 | 4 | 1 | 247 | 1 | 247 | 1.72e-78 | 237 |
| Msa0295710 | AT3G15450.3 | 64.286 | 182 | 58 | 4 | 1 | 180 | 1 | 177 | 2.46e-74 | 224 |
| Msa0295710 | AT3G22850.1 | 44.939 | 247 | 133 | 1 | 1 | 247 | 1 | 244 | 5.28e-73 | 223 |
| Msa0295710 | AT5G19140.1 | 42.241 | 232 | 127 | 5 | 1 | 230 | 1 | 227 | 3.31e-55 | 177 |
| Msa0295710 | AT5G19140.3 | 48.521 | 169 | 84 | 2 | 63 | 230 | 25 | 191 | 5.81e-50 | 163 |
| Msa0295710 | AT5G19140.2 | 39.655 | 232 | 121 | 6 | 1 | 230 | 1 | 215 | 3.45e-47 | 156 |
Find 77 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTAGAGCTTAAGATTT+TGG | 0.158220 | 2_3:+48407609 | Msa0295710:five_prime_UTR |
| AACCTTTGATGAAGAGAAAA+AGG | 0.230736 | 2_3:-48407836 | None:intergenic |
| TGTTTCTGATTGAAGCTTAT+AGG | 0.236090 | 2_3:+48408401 | Msa0295710:CDS |
| ACAACTTGATCTGGTGGATA+TGG | 0.300897 | 2_3:-48408442 | None:intergenic |
| TCCTTACTGAACAAGCAATA+TGG | 0.322158 | 2_3:+48408352 | Msa0295710:CDS |
| TGACATATACAGCTTGTTCT+TGG | 0.334278 | 2_3:+48408312 | Msa0295710:CDS |
| GCAGGGCTATTCAGCTCTTC+AGG | 0.347531 | 2_3:-48407683 | None:intergenic |
| TGGTGGATTGAAGTTGTATT+GGG | 0.352740 | 2_3:+48408677 | Msa0295710:CDS |
| TTCATAGAACAAGTATTATC+AGG | 0.367478 | 2_3:-48407773 | None:intergenic |
| GACATATACAGCTTGTTCTT+GGG | 0.373171 | 2_3:+48408313 | Msa0295710:CDS |
| GATGTGTGGGGCCAACTTTA+AGG | 0.380784 | 2_3:+48409271 | Msa0295710:CDS |
| TTTAAGCCTTTGTATGATGC+AGG | 0.380881 | 2_3:-48407701 | None:intergenic |
| AATACTTGTTCTATGAACTT+TGG | 0.381957 | 2_3:+48407779 | Msa0295710:CDS |
| AACCCTCTTGTACAACATTA+AGG | 0.386014 | 2_3:-48408737 | None:intergenic |
| GTTGTTTATGACAGCACATA+TGG | 0.386283 | 2_3:+48408493 | Msa0295710:CDS |
| TTGCTCCCATTCCATCCAAT+TGG | 0.404613 | 2_3:-48409342 | None:intergenic |
| ATGGTGGATTGAAGTTGTAT+TGG | 0.415848 | 2_3:+48408676 | Msa0295710:CDS |
| CAAGTTGTTAAGGAACTTGA+TGG | 0.416575 | 2_3:+48408457 | Msa0295710:CDS |
| TATTGGGGTATTGCCGCTGA+TGG | 0.425828 | 2_3:+48408693 | Msa0295710:CDS |
| CAAACACAGGAAACCGAAAC+AGG | 0.425940 | 2_3:-48409501 | None:intergenic |
| TCCACCAGATCAAGTTGTTA+AGG | 0.433324 | 2_3:+48408447 | Msa0295710:CDS |
| CTTGTTGCTCAGAAGGAAAC+AGG | 0.435957 | 2_3:-48409533 | None:intergenic |
| AGAATTTCTTCAGAAAGCTT+AGG | 0.436367 | 2_3:-48407728 | None:intergenic |
| AGTTCCTTAACAACTTGATC+TGG | 0.448722 | 2_3:-48408451 | None:intergenic |
| ACCATATTGCTTGTTCAGTA+AGG | 0.461779 | 2_3:-48408353 | None:intergenic |
| GAACTTATCAACCTTAAAGT+TGG | 0.462511 | 2_3:-48409282 | None:intergenic |
| AAGGTAAGGTAGGTGGTGGT+AGG | 0.464791 | 2_3:-48409462 | None:intergenic |
| GTGAATCCAATTGGATGGAA+TGG | 0.469235 | 2_3:+48409336 | Msa0295710:CDS |
| GTGGATGAGCAAGACCTTTG+TGG | 0.473208 | 2_3:-48407661 | None:intergenic |
| AGGACAAATTCAAAAGGATA+AGG | 0.482557 | 2_3:-48409481 | None:intergenic |
| TTACTTAGTATTGAATATGA+AGG | 0.487265 | 2_3:-48407575 | None:intergenic |
| ATACTACCTTGTTGCTCAGA+AGG | 0.492421 | 2_3:-48409540 | None:intergenic |
| CAAGCAATATGGTTTGTCAA+AGG | 0.499784 | 2_3:+48408363 | Msa0295710:CDS |
| ACTCCTTCACTGTCTATCCT+TGG | 0.503821 | 2_3:-48409248 | None:intergenic |
| CAATTGATACCTGCTGGAAA+AGG | 0.504528 | 2_3:-48408777 | None:intergenic |
| AAGCAATATGGTTTGTCAAA+GGG | 0.505741 | 2_3:+48408364 | Msa0295710:CDS |
| TCAAAAGGATAAGGTAAGGT+AGG | 0.506006 | 2_3:-48409472 | None:intergenic |
| CGAAACAGGACAAATTCAAA+AGG | 0.508229 | 2_3:-48409487 | None:intergenic |
| TGAATCCAATTGGATGGAAT+GGG | 0.508806 | 2_3:+48409337 | Msa0295710:CDS |
| TTTATGCAGGGTTCTGATGG+TGG | 0.519132 | 2_3:+48408660 | Msa0295710:intron |
| GCATCCACTGAACAAGTTGA+AGG | 0.521756 | 2_3:+48409220 | Msa0295710:CDS |
| TCTTAGCTAAAACGAGAGAA+AGG | 0.524453 | 2_3:-48409567 | None:intergenic |
| TCCTTAACAACTTGATCTGG+TGG | 0.527113 | 2_3:-48408448 | None:intergenic |
| AAGGTAGGTGGTGGTAGGGT+TGG | 0.534755 | 2_3:-48409457 | None:intergenic |
| ACATATACAGCTTGTTCTTG+GGG | 0.539505 | 2_3:+48408314 | Msa0295710:CDS |
| TTAAGCCTTTGTATGATGCA+GGG | 0.539695 | 2_3:-48407700 | None:intergenic |
| TGTATGTTTCATAGTGAAGG+AGG | 0.544867 | 2_3:+48409182 | Msa0295710:CDS |
| GAGTTGGTAGTGAATCCAAT+TGG | 0.553165 | 2_3:+48409327 | Msa0295710:CDS |
| AGGTAAGGTAGGTGGTGGTA+GGG | 0.555732 | 2_3:-48409461 | None:intergenic |
| GGATAAGGTAAGGTAGGTGG+TGG | 0.560207 | 2_3:-48409466 | None:intergenic |
| TGGTAGTGAATCCAATTGGA+TGG | 0.564629 | 2_3:+48409331 | Msa0295710:CDS |
| ATTGGGGTATTGCCGCTGAT+GGG | 0.568391 | 2_3:+48408694 | Msa0295710:CDS |
| GTCAACAGTATTCCTCGAGT+TGG | 0.573016 | 2_3:+48409311 | Msa0295710:CDS |
| GGGTGTATGTTTCATAGTGA+AGG | 0.585970 | 2_3:+48409179 | Msa0295710:intron |
| GTGGATATGGACCACGGTCA+CGG | 0.586213 | 2_3:-48408429 | None:intergenic |
| CTGTTTCCTTCTGAGCAACA+AGG | 0.587166 | 2_3:+48409534 | Msa0295710:three_prime_UTR |
| GGGCTATTCAGCTCTTCAGG+TGG | 0.589074 | 2_3:-48407680 | None:intergenic |
| ACCTGCTGGAAAAGGAGCAA+AGG | 0.590844 | 2_3:-48408769 | None:intergenic |
| TGACCTTAATGTTGTACAAG+AGG | 0.595852 | 2_3:+48408734 | Msa0295710:CDS |
| AAATTCAAAAGGATAAGGTA+AGG | 0.599797 | 2_3:-48409476 | None:intergenic |
| CAGGAAAACTACACAAACAC+AGG | 0.599806 | 2_3:-48409514 | None:intergenic |
| ATTGCCTTCAACTTGTTCAG+TGG | 0.600704 | 2_3:-48409224 | None:intergenic |
| GGTGGATTGAAGTTGTATTG+GGG | 0.606006 | 2_3:+48408678 | Msa0295710:CDS |
| GACAGTGAAGGAGTGATGTG+TGG | 0.622107 | 2_3:+48409257 | Msa0295710:CDS |
| ACAGTGAAGGAGTGATGTGT+GGG | 0.629204 | 2_3:+48409258 | Msa0295710:CDS |
| AATAGCCCTGCATCATACAA+AGG | 0.630008 | 2_3:+48407695 | Msa0295710:CDS |
| AAAGGATAAGGTAAGGTAGG+TGG | 0.633343 | 2_3:-48409469 | None:intergenic |
| ATAAGCTTCAATCAGAAACA+TGG | 0.642892 | 2_3:-48408398 | None:intergenic |
| ACAAGTTGAAGGCAATGCCA+AGG | 0.645708 | 2_3:+48409231 | Msa0295710:CDS |
| TGTGCTGTCATAAACAACAA+AGG | 0.658420 | 2_3:-48408488 | None:intergenic |
| TATAGGACACTCCGTGACCG+TGG | 0.676131 | 2_3:+48408418 | Msa0295710:CDS |
| ATGCCAAGGATAGACAGTGA+AGG | 0.681425 | 2_3:+48409245 | Msa0295710:CDS |
| GACCTTAATGTTGTACAAGA+GGG | 0.690369 | 2_3:+48408735 | Msa0295710:CDS |
| TTGGATTCACTACCAACTCG+AGG | 0.697059 | 2_3:-48409323 | None:intergenic |
| GATCACAACAGACCCATCAG+CGG | 0.715155 | 2_3:-48408706 | None:intergenic |
| GATCTGGTGGATATGGACCA+CGG | 0.727078 | 2_3:-48408435 | None:intergenic |
| CAGTGAAGGAGTGATGTGTG+GGG | 0.800044 | 2_3:+48409259 | Msa0295710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGTAACAAAAAAAAAAAAA+AGG | - | chr2_3:48407908-48407927 | None:intergenic | 10.0% |
| !!! | TATTTTTTTAACTCTAAATA+CGG | - | chr2_3:48409008-48409027 | None:intergenic | 10.0% |
| !! | TAGTAACAAAAAAAAAAAAA+AGG | - | chr2_3:48407908-48407927 | None:intergenic | 10.0% |
| !!! | TATTTTTTTAACTCTAAATA+CGG | - | chr2_3:48409008-48409027 | None:intergenic | 10.0% |
| !!! | ATTTTGTTTTCAAGATAAAT+GGG | - | chr2_3:48408820-48408839 | None:intergenic | 15.0% |
| !! | GTAAATACATAAAAACTTTA+TGG | + | chr2_3:48409379-48409398 | Msa0295710:three_prime_UTR | 15.0% |
| !!! | TATATATGTAAGAAGTTTTT+AGG | + | chr2_3:48409594-48409613 | Msa0295710:three_prime_UTR | 15.0% |
| !!! | ATTTTGTTTTCAAGATAAAT+GGG | - | chr2_3:48408820-48408839 | None:intergenic | 15.0% |
| !! | GTAAATACATAAAAACTTTA+TGG | + | chr2_3:48409379-48409398 | Msa0295710:three_prime_UTR | 15.0% |
| !!! | TATATATGTAAGAAGTTTTT+AGG | + | chr2_3:48409594-48409613 | Msa0295710:three_prime_UTR | 15.0% |
| !! | TGAATATGAAGGATTAAAAA+TGG | - | chr2_3:48407567-48407586 | None:intergenic | 20.0% |
| !!! | TTACTTAGTATTGAATATGA+AGG | - | chr2_3:48407578-48407597 | None:intergenic | 20.0% |
| !!! | CATCTTTAATTCCTTTTATA+AGG | + | chr2_3:48408031-48408050 | Msa0295710:intron | 20.0% |
| !!! | GATTTTGTTTTCAAGATAAA+TGG | - | chr2_3:48408821-48408840 | None:intergenic | 20.0% |
| !! | AAAACAAAATCTCTTCAAAT+TGG | + | chr2_3:48408830-48408849 | Msa0295710:intron | 20.0% |
| !! | TTTGTTAGATCAATATGATA+CGG | + | chr2_3:48408967-48408986 | Msa0295710:intron | 20.0% |
| !!! | TTTTTAAAATCATTGAATGC+AGG | + | chr2_3:48409158-48409177 | Msa0295710:intron | 20.0% |
| !!! | TTTTAAAATCATTGAATGCA+GGG | + | chr2_3:48409159-48409178 | Msa0295710:intron | 20.0% |
| !! | TGAATATGAAGGATTAAAAA+TGG | - | chr2_3:48407567-48407586 | None:intergenic | 20.0% |
| !!! | TTACTTAGTATTGAATATGA+AGG | - | chr2_3:48407578-48407597 | None:intergenic | 20.0% |
| !!! | CATCTTTAATTCCTTTTATA+AGG | + | chr2_3:48408031-48408050 | Msa0295710:intron | 20.0% |
| !!! | GATTTTGTTTTCAAGATAAA+TGG | - | chr2_3:48408821-48408840 | None:intergenic | 20.0% |
| !! | AAAACAAAATCTCTTCAAAT+TGG | + | chr2_3:48408830-48408849 | Msa0295710:intron | 20.0% |
| !! | TTTGTTAGATCAATATGATA+CGG | + | chr2_3:48408967-48408986 | Msa0295710:intron | 20.0% |
| !!! | TTTTTAAAATCATTGAATGC+AGG | + | chr2_3:48409158-48409177 | Msa0295710:intron | 20.0% |
| !!! | TTTTAAAATCATTGAATGCA+GGG | + | chr2_3:48409159-48409178 | Msa0295710:intron | 20.0% |
| !! | TTTCTTAGAGCTTAAGATTT+TGG | + | chr2_3:48407609-48407628 | Msa0295710:five_prime_UTR | 25.0% |
| ! | GTGTAGAATCAAAAAAATGT+TGG | + | chr2_3:48407631-48407650 | Msa0295710:exon | 25.0% |
| ! | TTCATAGAACAAGTATTATC+AGG | - | chr2_3:48407776-48407795 | None:intergenic | 25.0% |
| ! | AATACTTGTTCTATGAACTT+TGG | + | chr2_3:48407779-48407798 | Msa0295710:CDS | 25.0% |
| ! | ACAGAATTCATCCTTATAAA+AGG | - | chr2_3:48408045-48408064 | None:intergenic | 25.0% |
| ! | TCCAACATAAAAGCTTAATA+TGG | + | chr2_3:48408064-48408083 | Msa0295710:intron | 25.0% |
| !! | ACCATATTAAGCTTTTATGT+TGG | - | chr2_3:48408068-48408087 | None:intergenic | 25.0% |
| ! | ATAAAAGCTTAATATGGTGT+AGG | + | chr2_3:48408070-48408089 | Msa0295710:intron | 25.0% |
| ! | AGAATTGTTAACAAAGAACA+TGG | - | chr2_3:48408604-48408623 | None:intergenic | 25.0% |
| !!! | ATGATGTTTGTTTTTTATGC+AGG | + | chr2_3:48408647-48408666 | Msa0295710:intron | 25.0% |
| !!! | TGATGTTTGTTTTTTATGCA+GGG | + | chr2_3:48408648-48408667 | Msa0295710:intron | 25.0% |
| ! | AAATTCAAAAGGATAAGGTA+AGG | - | chr2_3:48409479-48409498 | None:intergenic | 25.0% |
| !! | TTTCTTAGAGCTTAAGATTT+TGG | + | chr2_3:48407609-48407628 | Msa0295710:five_prime_UTR | 25.0% |
| ! | GTGTAGAATCAAAAAAATGT+TGG | + | chr2_3:48407631-48407650 | Msa0295710:exon | 25.0% |
| ! | TTCATAGAACAAGTATTATC+AGG | - | chr2_3:48407776-48407795 | None:intergenic | 25.0% |
| ! | AATACTTGTTCTATGAACTT+TGG | + | chr2_3:48407779-48407798 | Msa0295710:CDS | 25.0% |
| ! | ACAGAATTCATCCTTATAAA+AGG | - | chr2_3:48408045-48408064 | None:intergenic | 25.0% |
| ! | TCCAACATAAAAGCTTAATA+TGG | + | chr2_3:48408064-48408083 | Msa0295710:intron | 25.0% |
| !! | ACCATATTAAGCTTTTATGT+TGG | - | chr2_3:48408068-48408087 | None:intergenic | 25.0% |
| ! | ATAAAAGCTTAATATGGTGT+AGG | + | chr2_3:48408070-48408089 | Msa0295710:intron | 25.0% |
| ! | AGAATTGTTAACAAAGAACA+TGG | - | chr2_3:48408604-48408623 | None:intergenic | 25.0% |
| !!! | ATGATGTTTGTTTTTTATGC+AGG | + | chr2_3:48408647-48408666 | Msa0295710:intron | 25.0% |
| !!! | TGATGTTTGTTTTTTATGCA+GGG | + | chr2_3:48408648-48408667 | Msa0295710:intron | 25.0% |
| ! | AAATTCAAAAGGATAAGGTA+AGG | - | chr2_3:48409479-48409498 | None:intergenic | 25.0% |
| AAGGATTAAAAATGGAAGCA+GGG | - | chr2_3:48407559-48407578 | None:intergenic | 30.0% | |
| AGAATTTCTTCAGAAAGCTT+AGG | - | chr2_3:48407731-48407750 | None:intergenic | 30.0% | |
| AACCTTTGATGAAGAGAAAA+AGG | - | chr2_3:48407839-48407858 | None:intergenic | 30.0% | |
| TAACATAATACACATGTCTC+TGG | - | chr2_3:48408110-48408129 | None:intergenic | 30.0% | |
| TCTACTAATCTCCTTCAATT+TGG | - | chr2_3:48408186-48408205 | None:intergenic | 30.0% | |
| ! | TTTTGTAGCAACCATGTTAT+TGG | - | chr2_3:48408223-48408242 | None:intergenic | 30.0% |
| !! | TATTTTTGCAGGTTGTTTTG+TGG | + | chr2_3:48408283-48408302 | Msa0295710:intron | 30.0% |
| !! | ATTTTTGCAGGTTGTTTTGT+GGG | + | chr2_3:48408284-48408303 | Msa0295710:intron | 30.0% |
| ! | AAGCAATATGGTTTGTCAAA+GGG | + | chr2_3:48408364-48408383 | Msa0295710:CDS | 30.0% |
| ATAAGCTTCAATCAGAAACA+TGG | - | chr2_3:48408401-48408420 | None:intergenic | 30.0% | |
| ! | TGTTTCTGATTGAAGCTTAT+AGG | + | chr2_3:48408401-48408420 | Msa0295710:CDS | 30.0% |
| ATTACATCATAACCAACATG+TGG | + | chr2_3:48408857-48408876 | Msa0295710:intron | 30.0% | |
| TAGATCAATATGATACGGTT+TGG | + | chr2_3:48408972-48408991 | Msa0295710:intron | 30.0% | |
| AAGTGTCTGAGTCTATAATT+TGG | - | chr2_3:48409109-48409128 | None:intergenic | 30.0% | |
| CACTTCAAACAAATTGTCAA+AGG | + | chr2_3:48409124-48409143 | Msa0295710:intron | 30.0% | |
| GAACTTATCAACCTTAAAGT+TGG | - | chr2_3:48409285-48409304 | None:intergenic | 30.0% | |
| AGGACAAATTCAAAAGGATA+AGG | - | chr2_3:48409484-48409503 | None:intergenic | 30.0% | |
| ! | CTTTTGAATTTGTCCTGTTT+CGG | + | chr2_3:48409488-48409507 | Msa0295710:three_prime_UTR | 30.0% |
| AAGGATTAAAAATGGAAGCA+GGG | - | chr2_3:48407559-48407578 | None:intergenic | 30.0% | |
| AGAATTTCTTCAGAAAGCTT+AGG | - | chr2_3:48407731-48407750 | None:intergenic | 30.0% | |
| AACCTTTGATGAAGAGAAAA+AGG | - | chr2_3:48407839-48407858 | None:intergenic | 30.0% | |
| TAACATAATACACATGTCTC+TGG | - | chr2_3:48408110-48408129 | None:intergenic | 30.0% | |
| TCTACTAATCTCCTTCAATT+TGG | - | chr2_3:48408186-48408205 | None:intergenic | 30.0% | |
| ! | TTTTGTAGCAACCATGTTAT+TGG | - | chr2_3:48408223-48408242 | None:intergenic | 30.0% |
| !! | TATTTTTGCAGGTTGTTTTG+TGG | + | chr2_3:48408283-48408302 | Msa0295710:intron | 30.0% |
| !! | ATTTTTGCAGGTTGTTTTGT+GGG | + | chr2_3:48408284-48408303 | Msa0295710:intron | 30.0% |
| ! | AAGCAATATGGTTTGTCAAA+GGG | + | chr2_3:48408364-48408383 | Msa0295710:CDS | 30.0% |
| ATAAGCTTCAATCAGAAACA+TGG | - | chr2_3:48408401-48408420 | None:intergenic | 30.0% | |
| ! | TGTTTCTGATTGAAGCTTAT+AGG | + | chr2_3:48408401-48408420 | Msa0295710:CDS | 30.0% |
| ATTACATCATAACCAACATG+TGG | + | chr2_3:48408857-48408876 | Msa0295710:intron | 30.0% | |
| TAGATCAATATGATACGGTT+TGG | + | chr2_3:48408972-48408991 | Msa0295710:intron | 30.0% | |
| AAGTGTCTGAGTCTATAATT+TGG | - | chr2_3:48409109-48409128 | None:intergenic | 30.0% | |
| CACTTCAAACAAATTGTCAA+AGG | + | chr2_3:48409124-48409143 | Msa0295710:intron | 30.0% | |
| GAACTTATCAACCTTAAAGT+TGG | - | chr2_3:48409285-48409304 | None:intergenic | 30.0% | |
| AGGACAAATTCAAAAGGATA+AGG | - | chr2_3:48409484-48409503 | None:intergenic | 30.0% | |
| ! | CTTTTGAATTTGTCCTGTTT+CGG | + | chr2_3:48409488-48409507 | Msa0295710:three_prime_UTR | 30.0% |
| GAAGGATTAAAAATGGAAGC+AGG | - | chr2_3:48407560-48407579 | None:intergenic | 35.0% | |
| ! | ATGTTGGCAATTTTCCACAA+AGG | + | chr2_3:48407647-48407666 | Msa0295710:CDS | 35.0% |
| TTAAGCCTTTGTATGATGCA+GGG | - | chr2_3:48407703-48407722 | None:intergenic | 35.0% | |
| TTTAAGCCTTTGTATGATGC+AGG | - | chr2_3:48407704-48407723 | None:intergenic | 35.0% | |
| TGAAGAGAAAAAGGCTTATC+AGG | - | chr2_3:48407830-48407849 | None:intergenic | 35.0% | |
| ! | AGCCTTTTTCTCTTCATCAA+AGG | + | chr2_3:48407834-48407853 | Msa0295710:CDS | 35.0% |
| CTTAATATGGTGTAGGAGTA+TGG | + | chr2_3:48408077-48408096 | Msa0295710:intron | 35.0% | |
| GATGTTGTTGACCAAATTGA+AGG | + | chr2_3:48408172-48408191 | Msa0295710:intron | 35.0% | |
| ATGTTGTTAGTGCTAAGAGA+TGG | + | chr2_3:48408260-48408279 | Msa0295710:intron | 35.0% | |
| !! | CTAAGAGATGGTATTTTTGC+AGG | + | chr2_3:48408272-48408291 | Msa0295710:intron | 35.0% |
| ! | TGACATATACAGCTTGTTCT+TGG | + | chr2_3:48408312-48408331 | Msa0295710:CDS | 35.0% |
| ! | GACATATACAGCTTGTTCTT+GGG | + | chr2_3:48408313-48408332 | Msa0295710:CDS | 35.0% |
| ! | ACATATACAGCTTGTTCTTG+GGG | + | chr2_3:48408314-48408333 | Msa0295710:CDS | 35.0% |
| TCCTTACTGAACAAGCAATA+TGG | + | chr2_3:48408352-48408371 | Msa0295710:CDS | 35.0% | |
| ACCATATTGCTTGTTCAGTA+AGG | - | chr2_3:48408356-48408375 | None:intergenic | 35.0% | |
| ! | CAAGCAATATGGTTTGTCAA+AGG | + | chr2_3:48408363-48408382 | Msa0295710:CDS | 35.0% |
| AGTTCCTTAACAACTTGATC+TGG | - | chr2_3:48408454-48408473 | None:intergenic | 35.0% | |
| CAAGTTGTTAAGGAACTTGA+TGG | + | chr2_3:48408457-48408476 | Msa0295710:CDS | 35.0% | |
| TGTGCTGTCATAAACAACAA+AGG | - | chr2_3:48408491-48408510 | None:intergenic | 35.0% | |
| GTTGTTTATGACAGCACATA+TGG | + | chr2_3:48408493-48408512 | Msa0295710:CDS | 35.0% | |
| !!! | TTTTTTATGCAGGGTTCTGA+TGG | + | chr2_3:48408657-48408676 | Msa0295710:intron | 35.0% |
| !! | ATGGTGGATTGAAGTTGTAT+TGG | + | chr2_3:48408676-48408695 | Msa0295710:CDS | 35.0% |
| !! | TGGTGGATTGAAGTTGTATT+GGG | + | chr2_3:48408677-48408696 | Msa0295710:CDS | 35.0% |
| TGACCTTAATGTTGTACAAG+AGG | + | chr2_3:48408734-48408753 | Msa0295710:CDS | 35.0% | |
| GACCTTAATGTTGTACAAGA+GGG | + | chr2_3:48408735-48408754 | Msa0295710:CDS | 35.0% | |
| AACCCTCTTGTACAACATTA+AGG | - | chr2_3:48408740-48408759 | None:intergenic | 35.0% | |
| AATGATTGTTGGATCGAGAT+CGG | - | chr2_3:48409049-48409068 | None:intergenic | 35.0% | |
| GCTAACACATCAATGATTGT+TGG | - | chr2_3:48409060-48409079 | None:intergenic | 35.0% | |
| TGTATGTTTCATAGTGAAGG+AGG | + | chr2_3:48409182-48409201 | Msa0295710:CDS | 35.0% | |
| TGAATCCAATTGGATGGAAT+GGG | + | chr2_3:48409337-48409356 | Msa0295710:CDS | 35.0% | |
| TCAAAAGGATAAGGTAAGGT+AGG | - | chr2_3:48409475-48409494 | None:intergenic | 35.0% | |
| CGAAACAGGACAAATTCAAA+AGG | - | chr2_3:48409490-48409509 | None:intergenic | 35.0% | |
| TCTTAGCTAAAACGAGAGAA+AGG | - | chr2_3:48409570-48409589 | None:intergenic | 35.0% | |
| GAAGGATTAAAAATGGAAGC+AGG | - | chr2_3:48407560-48407579 | None:intergenic | 35.0% | |
| ! | ATGTTGGCAATTTTCCACAA+AGG | + | chr2_3:48407647-48407666 | Msa0295710:CDS | 35.0% |
| TTAAGCCTTTGTATGATGCA+GGG | - | chr2_3:48407703-48407722 | None:intergenic | 35.0% | |
| TTTAAGCCTTTGTATGATGC+AGG | - | chr2_3:48407704-48407723 | None:intergenic | 35.0% | |
| TGAAGAGAAAAAGGCTTATC+AGG | - | chr2_3:48407830-48407849 | None:intergenic | 35.0% | |
| ! | AGCCTTTTTCTCTTCATCAA+AGG | + | chr2_3:48407834-48407853 | Msa0295710:CDS | 35.0% |
| CTTAATATGGTGTAGGAGTA+TGG | + | chr2_3:48408077-48408096 | Msa0295710:intron | 35.0% | |
| GATGTTGTTGACCAAATTGA+AGG | + | chr2_3:48408172-48408191 | Msa0295710:intron | 35.0% | |
| ATGTTGTTAGTGCTAAGAGA+TGG | + | chr2_3:48408260-48408279 | Msa0295710:intron | 35.0% | |
| !! | CTAAGAGATGGTATTTTTGC+AGG | + | chr2_3:48408272-48408291 | Msa0295710:intron | 35.0% |
| ! | TGACATATACAGCTTGTTCT+TGG | + | chr2_3:48408312-48408331 | Msa0295710:CDS | 35.0% |
| ! | GACATATACAGCTTGTTCTT+GGG | + | chr2_3:48408313-48408332 | Msa0295710:CDS | 35.0% |
| ! | ACATATACAGCTTGTTCTTG+GGG | + | chr2_3:48408314-48408333 | Msa0295710:CDS | 35.0% |
| TCCTTACTGAACAAGCAATA+TGG | + | chr2_3:48408352-48408371 | Msa0295710:CDS | 35.0% | |
| ACCATATTGCTTGTTCAGTA+AGG | - | chr2_3:48408356-48408375 | None:intergenic | 35.0% | |
| ! | CAAGCAATATGGTTTGTCAA+AGG | + | chr2_3:48408363-48408382 | Msa0295710:CDS | 35.0% |
| AGTTCCTTAACAACTTGATC+TGG | - | chr2_3:48408454-48408473 | None:intergenic | 35.0% | |
| CAAGTTGTTAAGGAACTTGA+TGG | + | chr2_3:48408457-48408476 | Msa0295710:CDS | 35.0% | |
| TGTGCTGTCATAAACAACAA+AGG | - | chr2_3:48408491-48408510 | None:intergenic | 35.0% | |
| GTTGTTTATGACAGCACATA+TGG | + | chr2_3:48408493-48408512 | Msa0295710:CDS | 35.0% | |
| !!! | TTTTTTATGCAGGGTTCTGA+TGG | + | chr2_3:48408657-48408676 | Msa0295710:intron | 35.0% |
| !! | ATGGTGGATTGAAGTTGTAT+TGG | + | chr2_3:48408676-48408695 | Msa0295710:CDS | 35.0% |
| !! | TGGTGGATTGAAGTTGTATT+GGG | + | chr2_3:48408677-48408696 | Msa0295710:CDS | 35.0% |
| TGACCTTAATGTTGTACAAG+AGG | + | chr2_3:48408734-48408753 | Msa0295710:CDS | 35.0% | |
| GACCTTAATGTTGTACAAGA+GGG | + | chr2_3:48408735-48408754 | Msa0295710:CDS | 35.0% | |
| AACCCTCTTGTACAACATTA+AGG | - | chr2_3:48408740-48408759 | None:intergenic | 35.0% | |
| AATGATTGTTGGATCGAGAT+CGG | - | chr2_3:48409049-48409068 | None:intergenic | 35.0% | |
| GCTAACACATCAATGATTGT+TGG | - | chr2_3:48409060-48409079 | None:intergenic | 35.0% | |
| TGTATGTTTCATAGTGAAGG+AGG | + | chr2_3:48409182-48409201 | Msa0295710:CDS | 35.0% | |
| TGAATCCAATTGGATGGAAT+GGG | + | chr2_3:48409337-48409356 | Msa0295710:CDS | 35.0% | |
| TCAAAAGGATAAGGTAAGGT+AGG | - | chr2_3:48409475-48409494 | None:intergenic | 35.0% | |
| CGAAACAGGACAAATTCAAA+AGG | - | chr2_3:48409490-48409509 | None:intergenic | 35.0% | |
| TCTTAGCTAAAACGAGAGAA+AGG | - | chr2_3:48409570-48409589 | None:intergenic | 35.0% | |
| AATAGCCCTGCATCATACAA+AGG | + | chr2_3:48407695-48407714 | Msa0295710:CDS | 40.0% | |
| GTTTGCTTGAGCCAATAACA+TGG | + | chr2_3:48408209-48408228 | Msa0295710:intron | 40.0% | |
| ! | ACAACTTGATCTGGTGGATA+TGG | - | chr2_3:48408445-48408464 | None:intergenic | 40.0% |
| ! | TCCACCAGATCAAGTTGTTA+AGG | + | chr2_3:48408447-48408466 | Msa0295710:CDS | 40.0% |
| TCCTTAACAACTTGATCTGG+TGG | - | chr2_3:48408451-48408470 | None:intergenic | 40.0% | |
| !!! | TGGAATTGTTTTTGCTGCAC+TGG | + | chr2_3:48408513-48408532 | Msa0295710:CDS | 40.0% |
| !! | GGTGGATTGAAGTTGTATTG+GGG | + | chr2_3:48408678-48408697 | Msa0295710:CDS | 40.0% |
| CAATTGATACCTGCTGGAAA+AGG | - | chr2_3:48408780-48408799 | None:intergenic | 40.0% | |
| GCTAAACAATTGATACCTGC+TGG | - | chr2_3:48408786-48408805 | None:intergenic | 40.0% | |
| CATCATAACCAACATGTGGT+TGG | + | chr2_3:48408861-48408880 | Msa0295710:intron | 40.0% | |
| TGCATGCAATCTAAATCCCT+TGG | - | chr2_3:48408903-48408922 | None:intergenic | 40.0% | |
| GGGTGTATGTTTCATAGTGA+AGG | + | chr2_3:48409179-48409198 | Msa0295710:intron | 40.0% | |
| ! | ATTGCCTTCAACTTGTTCAG+TGG | - | chr2_3:48409227-48409246 | None:intergenic | 40.0% |
| !! | GAGTTGGTAGTGAATCCAAT+TGG | + | chr2_3:48409327-48409346 | Msa0295710:CDS | 40.0% |
| ! | TGGTAGTGAATCCAATTGGA+TGG | + | chr2_3:48409331-48409350 | Msa0295710:CDS | 40.0% |
| GTGAATCCAATTGGATGGAA+TGG | + | chr2_3:48409336-48409355 | Msa0295710:CDS | 40.0% | |
| AAAGGATAAGGTAAGGTAGG+TGG | - | chr2_3:48409472-48409491 | None:intergenic | 40.0% | |
| CAGGAAAACTACACAAACAC+AGG | - | chr2_3:48409517-48409536 | None:intergenic | 40.0% | |
| ATACTACCTTGTTGCTCAGA+AGG | - | chr2_3:48409543-48409562 | None:intergenic | 40.0% | |
| AATAGCCCTGCATCATACAA+AGG | + | chr2_3:48407695-48407714 | Msa0295710:CDS | 40.0% | |
| GTTTGCTTGAGCCAATAACA+TGG | + | chr2_3:48408209-48408228 | Msa0295710:intron | 40.0% | |
| ! | ACAACTTGATCTGGTGGATA+TGG | - | chr2_3:48408445-48408464 | None:intergenic | 40.0% |
| ! | TCCACCAGATCAAGTTGTTA+AGG | + | chr2_3:48408447-48408466 | Msa0295710:CDS | 40.0% |
| TCCTTAACAACTTGATCTGG+TGG | - | chr2_3:48408451-48408470 | None:intergenic | 40.0% | |
| !!! | TGGAATTGTTTTTGCTGCAC+TGG | + | chr2_3:48408513-48408532 | Msa0295710:CDS | 40.0% |
| !! | GGTGGATTGAAGTTGTATTG+GGG | + | chr2_3:48408678-48408697 | Msa0295710:CDS | 40.0% |
| CAATTGATACCTGCTGGAAA+AGG | - | chr2_3:48408780-48408799 | None:intergenic | 40.0% | |
| GCTAAACAATTGATACCTGC+TGG | - | chr2_3:48408786-48408805 | None:intergenic | 40.0% | |
| CATCATAACCAACATGTGGT+TGG | + | chr2_3:48408861-48408880 | Msa0295710:intron | 40.0% | |
| TGCATGCAATCTAAATCCCT+TGG | - | chr2_3:48408903-48408922 | None:intergenic | 40.0% | |
| GGGTGTATGTTTCATAGTGA+AGG | + | chr2_3:48409179-48409198 | Msa0295710:intron | 40.0% | |
| ! | ATTGCCTTCAACTTGTTCAG+TGG | - | chr2_3:48409227-48409246 | None:intergenic | 40.0% |
| !! | GAGTTGGTAGTGAATCCAAT+TGG | + | chr2_3:48409327-48409346 | Msa0295710:CDS | 40.0% |
| ! | TGGTAGTGAATCCAATTGGA+TGG | + | chr2_3:48409331-48409350 | Msa0295710:CDS | 40.0% |
| GTGAATCCAATTGGATGGAA+TGG | + | chr2_3:48409336-48409355 | Msa0295710:CDS | 40.0% | |
| AAAGGATAAGGTAAGGTAGG+TGG | - | chr2_3:48409472-48409491 | None:intergenic | 40.0% | |
| CAGGAAAACTACACAAACAC+AGG | - | chr2_3:48409517-48409536 | None:intergenic | 40.0% | |
| ATACTACCTTGTTGCTCAGA+AGG | - | chr2_3:48409543-48409562 | None:intergenic | 40.0% | |
| ! | TTTATGCAGGGTTCTGATGG+TGG | + | chr2_3:48408660-48408679 | Msa0295710:intron | 45.0% |
| ! | GCATCCACTGAACAAGTTGA+AGG | + | chr2_3:48409220-48409239 | Msa0295710:CDS | 45.0% |
| ! | ACAAGTTGAAGGCAATGCCA+AGG | + | chr2_3:48409231-48409250 | Msa0295710:CDS | 45.0% |
| ATGCCAAGGATAGACAGTGA+AGG | + | chr2_3:48409245-48409264 | Msa0295710:CDS | 45.0% | |
| ACTCCTTCACTGTCTATCCT+TGG | - | chr2_3:48409251-48409270 | None:intergenic | 45.0% | |
| ACAGTGAAGGAGTGATGTGT+GGG | + | chr2_3:48409258-48409277 | Msa0295710:CDS | 45.0% | |
| GTCAACAGTATTCCTCGAGT+TGG | + | chr2_3:48409311-48409330 | Msa0295710:CDS | 45.0% | |
| TTGGATTCACTACCAACTCG+AGG | - | chr2_3:48409326-48409345 | None:intergenic | 45.0% | |
| TTGCTCCCATTCCATCCAAT+TGG | - | chr2_3:48409345-48409364 | None:intergenic | 45.0% | |
| CAAACACAGGAAACCGAAAC+AGG | - | chr2_3:48409504-48409523 | None:intergenic | 45.0% | |
| CTTGTTGCTCAGAAGGAAAC+AGG | - | chr2_3:48409536-48409555 | None:intergenic | 45.0% | |
| CTGTTTCCTTCTGAGCAACA+AGG | + | chr2_3:48409534-48409553 | Msa0295710:three_prime_UTR | 45.0% | |
| ! | TTTATGCAGGGTTCTGATGG+TGG | + | chr2_3:48408660-48408679 | Msa0295710:intron | 45.0% |
| ! | GCATCCACTGAACAAGTTGA+AGG | + | chr2_3:48409220-48409239 | Msa0295710:CDS | 45.0% |
| ! | ACAAGTTGAAGGCAATGCCA+AGG | + | chr2_3:48409231-48409250 | Msa0295710:CDS | 45.0% |
| ATGCCAAGGATAGACAGTGA+AGG | + | chr2_3:48409245-48409264 | Msa0295710:CDS | 45.0% | |
| ACTCCTTCACTGTCTATCCT+TGG | - | chr2_3:48409251-48409270 | None:intergenic | 45.0% | |
| ACAGTGAAGGAGTGATGTGT+GGG | + | chr2_3:48409258-48409277 | Msa0295710:CDS | 45.0% | |
| GTCAACAGTATTCCTCGAGT+TGG | + | chr2_3:48409311-48409330 | Msa0295710:CDS | 45.0% | |
| TTGGATTCACTACCAACTCG+AGG | - | chr2_3:48409326-48409345 | None:intergenic | 45.0% | |
| TTGCTCCCATTCCATCCAAT+TGG | - | chr2_3:48409345-48409364 | None:intergenic | 45.0% | |
| CAAACACAGGAAACCGAAAC+AGG | - | chr2_3:48409504-48409523 | None:intergenic | 45.0% | |
| CTTGTTGCTCAGAAGGAAAC+AGG | - | chr2_3:48409536-48409555 | None:intergenic | 45.0% | |
| CTGTTTCCTTCTGAGCAACA+AGG | + | chr2_3:48409534-48409553 | Msa0295710:three_prime_UTR | 45.0% | |
| GTGGATGAGCAAGACCTTTG+TGG | - | chr2_3:48407664-48407683 | None:intergenic | 50.0% | |
| ! | GATCTGGTGGATATGGACCA+CGG | - | chr2_3:48408438-48408457 | None:intergenic | 50.0% |
| !! | TATTGGGGTATTGCCGCTGA+TGG | + | chr2_3:48408693-48408712 | Msa0295710:CDS | 50.0% |
| !! | ATTGGGGTATTGCCGCTGAT+GGG | + | chr2_3:48408694-48408713 | Msa0295710:CDS | 50.0% |
| GATCACAACAGACCCATCAG+CGG | - | chr2_3:48408709-48408728 | None:intergenic | 50.0% | |
| ! | TCCTTTGCTCCTTTTCCAGC+AGG | + | chr2_3:48408768-48408787 | Msa0295710:CDS | 50.0% |
| ACCTGCTGGAAAAGGAGCAA+AGG | - | chr2_3:48408772-48408791 | None:intergenic | 50.0% | |
| TCCGAGTGGTAAGACACCAA+GGG | + | chr2_3:48408884-48408903 | Msa0295710:intron | 50.0% | |
| !! | TCCCTTGGTGTCTTACCACT+CGG | - | chr2_3:48408888-48408907 | None:intergenic | 50.0% |
| GACAGTGAAGGAGTGATGTG+TGG | + | chr2_3:48409257-48409276 | Msa0295710:CDS | 50.0% | |
| CAGTGAAGGAGTGATGTGTG+GGG | + | chr2_3:48409259-48409278 | Msa0295710:CDS | 50.0% | |
| GATGTGTGGGGCCAACTTTA+AGG | + | chr2_3:48409271-48409290 | Msa0295710:CDS | 50.0% | |
| ! | AGGTAAGGTAGGTGGTGGTA+GGG | - | chr2_3:48409464-48409483 | None:intergenic | 50.0% |
| ! | AAGGTAAGGTAGGTGGTGGT+AGG | - | chr2_3:48409465-48409484 | None:intergenic | 50.0% |
| GGATAAGGTAAGGTAGGTGG+TGG | - | chr2_3:48409469-48409488 | None:intergenic | 50.0% | |
| GTGGATGAGCAAGACCTTTG+TGG | - | chr2_3:48407664-48407683 | None:intergenic | 50.0% | |
| ! | GATCTGGTGGATATGGACCA+CGG | - | chr2_3:48408438-48408457 | None:intergenic | 50.0% |
| !! | TATTGGGGTATTGCCGCTGA+TGG | + | chr2_3:48408693-48408712 | Msa0295710:CDS | 50.0% |
| !! | ATTGGGGTATTGCCGCTGAT+GGG | + | chr2_3:48408694-48408713 | Msa0295710:CDS | 50.0% |
| GATCACAACAGACCCATCAG+CGG | - | chr2_3:48408709-48408728 | None:intergenic | 50.0% | |
| ! | TCCTTTGCTCCTTTTCCAGC+AGG | + | chr2_3:48408768-48408787 | Msa0295710:CDS | 50.0% |
| ACCTGCTGGAAAAGGAGCAA+AGG | - | chr2_3:48408772-48408791 | None:intergenic | 50.0% | |
| TCCGAGTGGTAAGACACCAA+GGG | + | chr2_3:48408884-48408903 | Msa0295710:intron | 50.0% | |
| !! | TCCCTTGGTGTCTTACCACT+CGG | - | chr2_3:48408888-48408907 | None:intergenic | 50.0% |
| GACAGTGAAGGAGTGATGTG+TGG | + | chr2_3:48409257-48409276 | Msa0295710:CDS | 50.0% | |
| CAGTGAAGGAGTGATGTGTG+GGG | + | chr2_3:48409259-48409278 | Msa0295710:CDS | 50.0% | |
| GATGTGTGGGGCCAACTTTA+AGG | + | chr2_3:48409271-48409290 | Msa0295710:CDS | 50.0% | |
| ! | AGGTAAGGTAGGTGGTGGTA+GGG | - | chr2_3:48409464-48409483 | None:intergenic | 50.0% |
| ! | AAGGTAAGGTAGGTGGTGGT+AGG | - | chr2_3:48409465-48409484 | None:intergenic | 50.0% |
| GGATAAGGTAAGGTAGGTGG+TGG | - | chr2_3:48409469-48409488 | None:intergenic | 50.0% | |
| GGGCTATTCAGCTCTTCAGG+TGG | - | chr2_3:48407683-48407702 | None:intergenic | 55.0% | |
| GCAGGGCTATTCAGCTCTTC+AGG | - | chr2_3:48407686-48407705 | None:intergenic | 55.0% | |
| TATAGGACACTCCGTGACCG+TGG | + | chr2_3:48408418-48408437 | Msa0295710:CDS | 55.0% | |
| GTGGATATGGACCACGGTCA+CGG | - | chr2_3:48408432-48408451 | None:intergenic | 55.0% | |
| CACTCGGACCAACCACATGT+TGG | - | chr2_3:48408872-48408891 | None:intergenic | 55.0% | |
| ! | CAACATGTGGTTGGTCCGAG+TGG | + | chr2_3:48408870-48408889 | Msa0295710:intron | 55.0% |
| GTCCGAGTGGTAAGACACCA+AGG | + | chr2_3:48408883-48408902 | Msa0295710:intron | 55.0% | |
| ! | AAGGTAGGTGGTGGTAGGGT+TGG | - | chr2_3:48409460-48409479 | None:intergenic | 55.0% |
| GGGCTATTCAGCTCTTCAGG+TGG | - | chr2_3:48407683-48407702 | None:intergenic | 55.0% | |
| GCAGGGCTATTCAGCTCTTC+AGG | - | chr2_3:48407686-48407705 | None:intergenic | 55.0% | |
| TATAGGACACTCCGTGACCG+TGG | + | chr2_3:48408418-48408437 | Msa0295710:CDS | 55.0% | |
| GTGGATATGGACCACGGTCA+CGG | - | chr2_3:48408432-48408451 | None:intergenic | 55.0% | |
| CACTCGGACCAACCACATGT+TGG | - | chr2_3:48408872-48408891 | None:intergenic | 55.0% | |
| ! | CAACATGTGGTTGGTCCGAG+TGG | + | chr2_3:48408870-48408889 | Msa0295710:intron | 55.0% |
| GTCCGAGTGGTAAGACACCA+AGG | + | chr2_3:48408883-48408902 | Msa0295710:intron | 55.0% | |
| ! | AAGGTAGGTGGTGGTAGGGT+TGG | - | chr2_3:48409460-48409479 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 48407538 | 48409627 | 48407538 | ID=Msa0295710;Name=Msa0295710 |
| chr2_3 | mRNA | 48407538 | 48409627 | 48407538 | ID=Msa0295710-mRNA-1;Parent=Msa0295710;Name=Msa0295710-mRNA-1;_AED=0.08;_eAED=0.08;_QI=109|1|1|1|1|1|4|257|253 |
| chr2_3 | exon | 48407538 | 48407855 | 48407538 | ID=Msa0295710-mRNA-1:exon:15191;Parent=Msa0295710-mRNA-1 |
| chr2_3 | exon | 48408294 | 48408534 | 48408294 | ID=Msa0295710-mRNA-1:exon:15192;Parent=Msa0295710-mRNA-1 |
| chr2_3 | exon | 48408669 | 48408789 | 48408669 | ID=Msa0295710-mRNA-1:exon:15193;Parent=Msa0295710-mRNA-1 |
| chr2_3 | exon | 48409180 | 48409627 | 48409180 | ID=Msa0295710-mRNA-1:exon:15194;Parent=Msa0295710-mRNA-1 |
| chr2_3 | five_prime_UTR | 48407538 | 48407646 | 48407538 | ID=Msa0295710-mRNA-1:five_prime_utr;Parent=Msa0295710-mRNA-1 |
| chr2_3 | CDS | 48407647 | 48407855 | 48407647 | ID=Msa0295710-mRNA-1:cds;Parent=Msa0295710-mRNA-1 |
| chr2_3 | CDS | 48408294 | 48408534 | 48408294 | ID=Msa0295710-mRNA-1:cds;Parent=Msa0295710-mRNA-1 |
| chr2_3 | CDS | 48408669 | 48408789 | 48408669 | ID=Msa0295710-mRNA-1:cds;Parent=Msa0295710-mRNA-1 |
| chr2_3 | CDS | 48409180 | 48409370 | 48409180 | ID=Msa0295710-mRNA-1:cds;Parent=Msa0295710-mRNA-1 |
| chr2_3 | three_prime_UTR | 48409371 | 48409627 | 48409371 | ID=Msa0295710-mRNA-1:three_prime_utr;Parent=Msa0295710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
