AlfalfaGEDB | Msa0611920

M. sativa cultivar zhongmu-4 / Msa0611920

KEGG: -
GO: -
PFAM: PF10497.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611920	XP_003608058.1	92.053	302	21	3	17	317	20	319	0.0	556

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611920	sp\|Q922M5\|CDA7L_MOUSE	44.118	102	55	1	170	269	330	431	9.95e-23	100

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0389950	Msa0611920	0.817046	4.040663e-52	-8.615850e-47
Msa0556540	Msa0611920	0.863173	3.006879e-64	-8.615850e-47
Msa0611920	Msa0652070	0.872752	2.497323e-67	-8.615850e-47
Msa0611920	Msa0694630	0.840414	8.821792e-58	-8.615850e-47
Msa0611920	Msa1214350	0.809511	1.825440e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611920	MtrunA17_Chr4g0045521	92.053	302	21	3	17	317	20	319	0.0	556
Msa0611920	MtrunA17_Chr5g0402951	50.617	243	108	3	43	280	29	264	2.22e-78	244
Msa0611920	MtrunA17_Chr5g0402961	50.000	240	107	2	43	276	30	262	1.86e-69	222
Msa0611920	MtrunA17_Chr6g0479091	28.421	285	149	10	41	270	7	291	8.42e-17	79.3
Msa0611920	MtrunA17_Chr6g0457221	36.066	122	67	3	169	284	34	150	1.17e-16	80.9
Msa0611920	MtrunA17_Chr6g0457161	33.088	136	74	4	169	292	43	173	5.27e-15	75.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0611920	AT2G23530.1	49.796	245	97	5	43	275	29	259	9.04e-72	232
Msa0611920	AT4G37110.1	45.385	260	115	5	43	280	29	283	8.21e-69	220
Msa0611920	AT4G37110.2	47.773	247	115	5	43	280	29	270	3.81e-68	218
Msa0611920	AT4G37110.3	51.099	182	83	3	100	280	12	188	3.89e-61	197
Msa0611920	AT4G37110.4	51.099	182	83	3	100	280	12	188	3.89e-61	197
Msa0611920	AT1G67780.2	34.307	137	71	3	169	299	23	146	1.06e-16	80.9
Msa0611920	AT1G67780.1	34.307	137	71	3	169	299	23	146	1.06e-16	80.9
Msa0611920	AT5G38690.2	37.624	101	60	1	172	269	23	123	4.82e-14	73.2
Msa0611920	AT5G38690.1	37.624	101	60	1	172	269	23	123	4.82e-14	73.2
Msa0611920	AT1G67270.1	36.538	104	63	1	169	269	15	118	1.26e-13	71.6

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Find 93 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTCATCAAGTAAGAAA+AGG	0.473277	4_2:+60310704	Msa0611920:CDS
AACAAATGTGAATTACCCCA+AGG	0.685873	4_2:+60311606	Msa0611920:CDS
AACATGGTGATACTATGTTT+TGG	0.401812	4_2:+60312442	Msa0611920:three_prime_UTR
AAGAATGTTATCAAAACTCG+GGG	0.686682	4_2:-60312561	None:intergenic
AAGCCAGCATCAATCCCAAG+TGG	0.668388	4_2:+60311873	Msa0611920:CDS
AAGTAAGAAAAGGAAGGAAG+TGG	0.520203	4_2:+60310714	Msa0611920:CDS
AATAATGTTACCTTGTGTAG+AGG	0.592456	4_2:-60311647	None:intergenic
AATCTCCACAAAGCCGTCCT+TGG	0.429942	4_2:-60311623	None:intergenic
AATGTGAATTACCCCAAGGA+CGG	0.664710	4_2:+60311610	Msa0611920:CDS
ACAAGAAGGGCAAGTCCACT+TGG	0.490962	4_2:-60311888	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTGGAAAGCCCTAAAATTT+AGG	+	chr4_2:60310041-60310060	Msa0611920:intron	30.0%
TGACATGTTTGTGTTATGTT+TGG	+	chr4_2:60310392-60310411	Msa0611920:intron	30.0%
AAACATGTTACCATTAAGTG+TGG	-	chr4_2:60310537-60310556	None:intergenic	30.0%
AGCTATGGTATATATATGGT+TGG	+	chr4_2:60310573-60310592	Msa0611920:intron	30.0%
TTCATCAAGTAAGAAAAGGA+AGG	+	chr4_2:60310708-60310727	Msa0611920:CDS	30.0%
CCTTGATTGGATCATATATA+TGG	-	chr4_2:60310858-60310877	None:intergenic	30.0%
CCATATATATGATCCAATCA+AGG	+	chr4_2:60310855-60310874	Msa0611920:CDS	30.0%
TCCCATTAAAAAATTGGCTA+TGG	-	chr4_2:60311302-60311321	None:intergenic	30.0%
CATATAACCAATGTTGTCTA+TGG	-	chr4_2:60311391-60311410	None:intergenic	30.0%
ATCTCGTTAATGCATAAAGT+TGG	+	chr4_2:60311476-60311495	Msa0611920:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_2	gene	60309493	60312665	60309493	ID=Msa0611920;Name=Msa0611920
chr4_2	mRNA	60309493	60312665	60309493	ID=Msa0611920-mRNA-1;Parent=Msa0611920;Name=Msa0611920-mRNA-1;_AED=0.01;_eAED=0.01;_QI=4\|1\|1\|1\|1\|1\|5\|285\|317
chr4_2	exon	60309493	60309795	60309493	ID=Msa0611920-mRNA-1:exon:16153;Parent=Msa0611920-mRNA-1
chr4_2	exon	60310645	60310899	60310645	ID=Msa0611920-mRNA-1:exon:16154;Parent=Msa0611920-mRNA-1
chr4_2	exon	60311575	60311658	60311575	ID=Msa0611920-mRNA-1:exon:16155;Parent=Msa0611920-mRNA-1
chr4_2	exon	60311853	60311982	60311853	ID=Msa0611920-mRNA-1:exon:16156;Parent=Msa0611920-mRNA-1
chr4_2	exon	60312195	60312665	60312195	ID=Msa0611920-mRNA-1:exon:16157;Parent=Msa0611920-mRNA-1
chr4_2	five_prime_UTR	60309493	60309496	60309493	ID=Msa0611920-mRNA-1:five_prime_utr;Parent=Msa0611920-mRNA-1
chr4_2	CDS	60309497	60309795	60309497	ID=Msa0611920-mRNA-1:cds;Parent=Msa0611920-mRNA-1
chr4_2	CDS	60310645	60310899	60310645	ID=Msa0611920-mRNA-1:cds;Parent=Msa0611920-mRNA-1
chr4_2	CDS	60311575	60311658	60311575	ID=Msa0611920-mRNA-1:cds;Parent=Msa0611920-mRNA-1
chr4_2	CDS	60311853	60311982	60311853	ID=Msa0611920-mRNA-1:cds;Parent=Msa0611920-mRNA-1
chr4_2	CDS	60312195	60312380	60312195	ID=Msa0611920-mRNA-1:cds;Parent=Msa0611920-mRNA-1
chr4_2	three_prime_UTR	60312381	60312665	60312381	ID=Msa0611920-mRNA-1:three_prime_utr;Parent=Msa0611920-mRNA-1

Gene Sequence

>Msa0611920

ATGGGAACTCGTCGTAGAAGGAGAAGCGAAGAAGAAGAATCAGCTTCTGAAGATGGCGGCGCCACCACCGAAACCAAAACGGCGAAAACTGAAGGTGACGCAGGTATTGTCGTTTCAGGTTCATCATCGCATTACGAACAGATTCGGGAACAAAGGATGAAAGAGAACGCTGAGAGAATGCATAAGCTTGGTTTGTTAAAGCTTTCTGGTAACCTCAAGAAAACACCAACACCGCGCCCCTCCGTCAAGAAAAACTCCTCGTTACCATCCAACGAATCCGAAAGACGTTCTTCTTCTAGACTATCGACCCTACCACCAGTTAACTATTGTGACAAGCGTCCTAAAGCAGAGCGTCAAGAAAGTTCATCAAGTAAGAAAAGGAAGGAAGTGGAAATTCATATACCAGAAGGCACAAACCCTGAAGTTTACACTGAAGAGCATGAGAAGCTGCTAGGAGATTGTGAGACTGATTGGGAATTGTATGTAGATGGATATGATGAGGATGGGGACCATATATATGATCCAATCAAGGGAGAGAAATGTCATCAATGCGGGCGCTTAACTGTTGGTCAGCTGACCGATTGCAACAAATGTGAATTACCCCAAGGACGGCTTTGTGGAGATTGCCTCTACACAAGGTATGGAGAAAATGTGACAGAAGCCAGCATCAATCCCAAGTGGACTTGCCCTTCTTGTCGAGAAATTTGCAACTGCAATAGCTGCCGTAGGAAAAATGGTTGGATGCATACTGGTAATATATACAATAAGGTGACGAAATTGGGTTTCAAATCTGTTGCTCATTATCTGATTAAGACCCGTCGCTCTGAGGAAAGCATGGAAGGATCAGGTGCTGAAAATAATGTTGCCAAAGAAATACCAGAGATCTCTCCAGATTCAACACTGACTAGGACACTGAGTAGGCCAATTCGGACGAGAAGGGCTCTGAGAAGTTAA

Protein sequence

>Msa0611920

MGTRRRRRSEEEESASEDGGATTETKTAKTEGDAGIVVSGSSSHYEQIREQRMKENAERMHKLGLLKLSGNLKKTPTPRPSVKKNSSLPSNESERRSSSRLSTLPPVNYCDKRPKAERQESSSSKKRKEVEIHIPEGTNPEVYTEEHEKLLGDCETDWELYVDGYDEDGDHIYDPIKGEKCHQCGRLTVGQLTDCNKCELPQGRLCGDCLYTRYGENVTEASINPKWTCPSCREICNCNSCRRKNGWMHTGNIYNKVTKLGFKSVAHYLIKTRRSEESMEGSGAENNVAKEIPEISPDSTLTRTLSRPIRTRRALRS*