AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0611920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0611920 MtrunA17_Chr4g0045521 92.053 302 21 3 17 317 20 319 0.0 556
Msa0611920 MtrunA17_Chr5g0402951 50.617 243 108 3 43 280 29 264 2.22e-78 244
Msa0611920 MtrunA17_Chr5g0402961 50.000 240 107 2 43 276 30 262 1.86e-69 222
Msa0611920 MtrunA17_Chr6g0479091 28.421 285 149 10 41 270 7 291 8.42e-17 79.3
Msa0611920 MtrunA17_Chr6g0457221 36.066 122 67 3 169 284 34 150 1.17e-16 80.9
Msa0611920 MtrunA17_Chr6g0457161 33.088 136 74 4 169 292 43 173 5.27e-15 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0611920 AT2G23530.1 49.796 245 97 5 43 275 29 259 9.04e-72 232
Msa0611920 AT4G37110.1 45.385 260 115 5 43 280 29 283 8.21e-69 220
Msa0611920 AT4G37110.2 47.773 247 115 5 43 280 29 270 3.81e-68 218
Msa0611920 AT4G37110.3 51.099 182 83 3 100 280 12 188 3.89e-61 197
Msa0611920 AT4G37110.4 51.099 182 83 3 100 280 12 188 3.89e-61 197
Msa0611920 AT1G67780.2 34.307 137 71 3 169 299 23 146 1.06e-16 80.9
Msa0611920 AT1G67780.1 34.307 137 71 3 169 299 23 146 1.06e-16 80.9
Msa0611920 AT5G38690.2 37.624 101 60 1 172 269 23 123 4.82e-14 73.2
Msa0611920 AT5G38690.1 37.624 101 60 1 172 269 23 123 4.82e-14 73.2
Msa0611920 AT1G67270.1 36.538 104 63 1 169 269 15 118 1.26e-13 71.6

Find 93 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGTTTGTTAAAGCTTTC+TGG 0.081932 4_2:+60309683 Msa0611920:CDS
CCGAAAGACGTTCTTCTTCT+AGG 0.171232 4_2:+60309774 Msa0611920:CDS
GACGCAGGTATTGTCGTTTC+AGG 0.244261 4_2:+60309593 Msa0611920:CDS
CTTTCTTGACGCTCTGCTTT+AGG 0.267050 4_2:-60310685 None:intergenic
ACTTCAGGGTTTGTGCCTTC+TGG 0.274892 4_2:-60310748 None:intergenic
TGCTCTTCAGTGTAAACTTC+AGG 0.282121 4_2:-60310763 None:intergenic
AGAACAGAAACATGCCTTAA+TGG 0.296929 4_2:+60312403 Msa0611920:three_prime_UTR
AGAGATCTCTGGTATTTCTT+TGG 0.321827 4_2:-60312292 None:intergenic
TGTTTGTAAGGTGACGAAAT+TGG 0.331250 4_2:+60312185 Msa0611920:intron
TGTAGATGTACAAGCCATTA+AGG 0.342585 4_2:-60312417 None:intergenic
TGACATTTCTCTCCCTTGAT+TGG 0.343032 4_2:-60310868 None:intergenic
ATCTCCACAAAGCCGTCCTT+GGG 0.359404 4_2:-60311622 None:intergenic
TACTGGTAATATATACAATA+AGG 0.364939 4_2:+60311961 Msa0611920:CDS
CCTTGATTGGATCATATATA+TGG 0.370088 4_2:-60310855 None:intergenic
AGGGCTCTGAGAAGTTAAAT+AGG 0.387414 4_2:+60312363 Msa0611920:exon
GCTGAGAGAGTGTGAGAGAA+TGG 0.391361 4_2:+60309478 None:intergenic
GATTGGGAATTGTATGTAGA+TGG 0.394321 4_2:+60310814 Msa0611920:CDS
AACATGGTGATACTATGTTT+TGG 0.401812 4_2:+60312442 Msa0611920:three_prime_UTR
GAATGGGAACTCGTCGTAGA+AGG 0.402667 4_2:+60309495 Msa0611920:exon
TAGGAGATTGTGAGACTGAT+TGG 0.407394 4_2:+60310797 Msa0611920:CDS
GTCCTAGTCAGTGTTGAATC+TGG 0.411891 4_2:-60312315 None:intergenic
CCTAGAAGAAGAACGTCTTT+CGG 0.414633 4_2:-60309774 None:intergenic
CGCTTGTCACAATAGTTAAC+TGG 0.416480 4_2:-60310661 None:intergenic
TGGATATGAAGACAAGTTGT+TGG 0.417896 4_2:+60312462 Msa0611920:three_prime_UTR
TTGACGGAGGGGCGCGGTGT+TGG 0.424322 4_2:-60309722 None:intergenic
AATCTCCACAAAGCCGTCCT+TGG 0.429942 4_2:-60311623 None:intergenic
CATCGCATTACGAACAGATT+CGG 0.430803 4_2:+60309621 Msa0611920:CDS
AGAGCCCTTCTCGTCCGAAT+TGG 0.433546 4_2:-60312348 None:intergenic
GCTCTTCAGTGTAAACTTCA+GGG 0.440452 4_2:-60310762 None:intergenic
TAATTCACATTTGTTGCAAT+CGG 0.441018 4_2:-60311598 None:intergenic
ATCGCATTACGAACAGATTC+GGG 0.446329 4_2:+60309622 Msa0611920:CDS
TTTGGATTCAATGCCAGCTT+AGG 0.447077 4_2:+60312499 Msa0611920:three_prime_UTR
AGTCCACTTGGGATTGATGC+TGG 0.452136 4_2:-60311876 None:intergenic
TTTAGTTAAATGGCCTAAGC+TGG 0.462486 4_2:-60312512 None:intergenic
CGCCACCACCGAAACCAAAA+CGG 0.463153 4_2:+60309556 Msa0611920:CDS
GTTATCAAAACTCGGGGCAT+AGG 0.463673 4_2:-60312555 None:intergenic
CGTCTTTCGGATTCGTTGGA+TGG 0.473043 4_2:-60309761 None:intergenic
AAAGTTCATCAAGTAAGAAA+AGG 0.473277 4_2:+60310704 Msa0611920:CDS
GGACACTGAGTAGGCCAATT+CGG 0.474533 4_2:+60312334 Msa0611920:CDS
CATGCTTTCCTCAGAGCGAC+GGG 0.474902 4_2:-60312241 None:intergenic
GAAGAATCAGCTTCTGAAGA+TGG 0.476470 4_2:+60309530 Msa0611920:CDS
TTACCCCAAGGACGGCTTTG+TGG 0.478556 4_2:+60311618 Msa0611920:CDS
GAGGAAAGCATGGAAGGATC+AGG 0.480538 4_2:+60312252 Msa0611920:CDS
AGAACGTCTTTCGGATTCGT+TGG 0.481485 4_2:-60309765 None:intergenic
CCATGCTTTCCTCAGAGCGA+CGG 0.490576 4_2:-60312242 None:intergenic
ACAAGAAGGGCAAGTCCACT+TGG 0.490962 4_2:-60311888 None:intergenic
GTTTGTAAGGTGACGAAATT+GGG 0.490978 4_2:+60312186 Msa0611920:intron
GTTGAATCTGGAGAGATCTC+TGG 0.493207 4_2:-60312303 None:intergenic
TTATCAAAACTCGGGGCATA+GGG 0.497961 4_2:-60312554 None:intergenic
CTGAGAGAGTGTGAGAGAAT+GGG 0.498766 4_2:+60309479 None:intergenic
TTGCAAATTTCTCGACAAGA+AGG 0.509937 4_2:-60311902 None:intergenic
CGCTCTGAGGAAAGCATGGA+AGG 0.514423 4_2:+60312246 Msa0611920:CDS
AAGTAAGAAAAGGAAGGAAG+TGG 0.520203 4_2:+60310714 Msa0611920:CDS
CCATATATATGATCCAATCA+AGG 0.520783 4_2:+60310855 Msa0611920:CDS
TGCAAATTTCTCGACAAGAA+GGG 0.527573 4_2:-60311901 None:intergenic
GCTGAGAGAATGCATAAGCT+TGG 0.545658 4_2:+60309665 Msa0611920:CDS
CAAGAATGTTATCAAAACTC+GGG 0.546403 4_2:-60312562 None:intergenic
TAGATGGATATGATGAGGAT+GGG 0.547781 4_2:+60310830 Msa0611920:CDS
GTAGATGGATATGATGAGGA+TGG 0.552923 4_2:+60310829 Msa0611920:CDS
ACCAAAACGGCGAAAACTGA+AGG 0.555066 4_2:+60309569 Msa0611920:CDS
GTAGGCCAATTCGGACGAGA+AGG 0.559902 4_2:+60312343 Msa0611920:CDS
AGGAGATTGTGAGACTGATT+GGG 0.560044 4_2:+60310798 Msa0611920:CDS
GAGAGAAATGTCATCAATGC+GGG 0.565621 4_2:+60310878 Msa0611920:CDS
CACAATAGTTAACTGGTGGT+AGG 0.567871 4_2:-60310654 None:intergenic
CCGTCGCTCTGAGGAAAGCA+TGG 0.568211 4_2:+60312242 Msa0611920:CDS
CTCCAGATTCAACACTGACT+AGG 0.570452 4_2:+60312313 Msa0611920:CDS
ACAATAGTTAACTGGTGGTA+GGG 0.571951 4_2:-60310653 None:intergenic
GAAGAGCATGAGAAGCTGCT+AGG 0.582500 4_2:+60310778 Msa0611920:CDS
TTCATCAAGTAAGAAAAGGA+AGG 0.585443 4_2:+60310708 Msa0611920:CDS
AATAATGTTACCTTGTGTAG+AGG 0.592456 4_2:-60311647 None:intergenic
ACAAGAATGTTATCAAAACT+CGG 0.594529 4_2:-60312563 None:intergenic
TAGGCCAATTCGGACGAGAA+GGG 0.596764 4_2:+60312344 Msa0611920:CDS
ACGAACAGATTCGGGAACAA+AGG 0.601062 4_2:+60309630 Msa0611920:CDS
GTGGAGATTGCCTCTACACA+AGG 0.601803 4_2:+60311637 Msa0611920:CDS
GTGGAAATTCATATACCAGA+AGG 0.609129 4_2:+60310733 Msa0611920:CDS
CATATATATGATCCAATCAA+GGG 0.618648 4_2:+60310856 Msa0611920:CDS
CAAGAAGGGCAAGTCCACTT+GGG 0.625978 4_2:-60311887 None:intergenic
GGATTCGTTGGATGGTAACG+AGG 0.638919 4_2:-60309753 None:intergenic
GATTAAGACCCGTCGCTCTG+AGG 0.643030 4_2:+60312233 Msa0611920:CDS
GCAACTGCAATAGCTGCCGT+AGG 0.655636 4_2:+60311921 Msa0611920:CDS
GCGAAAACTGAAGGTGACGC+AGG 0.662627 4_2:+60309578 Msa0611920:CDS
CTTGTACATCTACATGAACA+TGG 0.663646 4_2:+60312426 Msa0611920:three_prime_UTR
AGATGGATATGATGAGGATG+GGG 0.664541 4_2:+60310831 Msa0611920:CDS
AATGTGAATTACCCCAAGGA+CGG 0.664710 4_2:+60311610 Msa0611920:CDS
AAGCCAGCATCAATCCCAAG+TGG 0.668388 4_2:+60311873 Msa0611920:CDS
GAATCAGCTTCTGAAGATGG+CGG 0.676548 4_2:+60309533 Msa0611920:CDS
AACAAATGTGAATTACCCCA+AGG 0.685873 4_2:+60311606 Msa0611920:CDS
AAGAATGTTATCAAAACTCG+GGG 0.686682 4_2:-60312561 None:intergenic
TTGTCACAATAGTTAACTGG+TGG 0.697560 4_2:-60310658 None:intergenic
TCTCCACAAAGCCGTCCTTG+GGG 0.703752 4_2:-60311621 None:intergenic
GGAGAGAAATGTCATCAATG+CGG 0.712891 4_2:+60310877 Msa0611920:CDS
CACTGACTAGGACACTGAGT+AGG 0.718098 4_2:+60312325 Msa0611920:CDS
GTATGTAGATGGATATGATG+AGG 0.739576 4_2:+60310825 Msa0611920:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTAAATTTTATGTATTAATT+AGG + chr4_2:60309979-60309998 Msa0611920:intron 10.0%
!!! TAATTTTTTTTATGTTTGAT+TGG + chr4_2:60310615-60310634 Msa0611920:intron 10.0%
!!! GTTTATCTATTTATTGATTA+TGG + chr4_2:60309957-60309976 Msa0611920:intron 15.0%
!! ATATTCTATTTAACTAAACA+TGG + chr4_2:60311106-60311125 Msa0611920:intron 15.0%
!! TATTCTATTTAACTAAACAT+GGG + chr4_2:60311107-60311126 Msa0611920:intron 15.0%
!!! ATGATGTTTTATATTGAATT+TGG - chr4_2:60311192-60311211 None:intergenic 15.0%
!! AAATTCAATATAAAACATCA+TGG + chr4_2:60311191-60311210 Msa0611920:intron 15.0%
!!! AAAATCATTTGTTTTCTTTT+AGG + chr4_2:60311553-60311572 Msa0611920:intron 15.0%
!! TCAACTAATAAACATATGTT+TGG - chr4_2:60310150-60310169 None:intergenic 20.0%
!! CTATCAATTGAAAATCATAT+CGG - chr4_2:60310225-60310244 None:intergenic 20.0%
!! CCAATAATAGTTAGAAAAAA+TGG - chr4_2:60310369-60310388 None:intergenic 20.0%
!!! CCATTTTTTCTAACTATTAT+TGG + chr4_2:60310366-60310385 Msa0611920:intron 20.0%
!! TTCTATCATATCATATACTA+AGG - chr4_2:60310483-60310502 None:intergenic 20.0%
!!! TAAGTTGTAATAACTTGTAA+TGG + chr4_2:60311236-60311255 Msa0611920:intron 20.0%
!!! AAGTTGTAATAACTTGTAAT+GGG + chr4_2:60311237-60311256 Msa0611920:intron 20.0%
!! TACTGGTAATATATACAATA+AGG + chr4_2:60311961-60311980 Msa0611920:CDS 20.0%
!!! TTGGTTTTCTTATTTTTGTT+TGG + chr4_2:60312481-60312500 Msa0611920:three_prime_UTR 20.0%
!!! GTTTTAGACTTTTAGTTAAA+TGG - chr4_2:60312525-60312544 None:intergenic 20.0%
! ATGTTTACACTTCTGATTAA+AGG - chr4_2:60309931-60309950 None:intergenic 25.0%
!! TTCAGATAGCCTAAATTTTA+GGG - chr4_2:60310053-60310072 None:intergenic 25.0%
!! TTTCAGATAGCCTAAATTTT+AGG - chr4_2:60310054-60310073 None:intergenic 25.0%
!! CGATATGATTTTCAATTGAT+AGG + chr4_2:60310223-60310242 Msa0611920:intron 25.0%
! TTTGAGCTATGGTATATATA+TGG + chr4_2:60310569-60310588 Msa0611920:intron 25.0%
! AAAGTTCATCAAGTAAGAAA+AGG + chr4_2:60310704-60310723 Msa0611920:CDS 25.0%
! CATATATATGATCCAATCAA+GGG + chr4_2:60310856-60310875 Msa0611920:CDS 25.0%
!! AGTTGTAATAACTTGTAATG+GGG + chr4_2:60311238-60311257 Msa0611920:intron 25.0%
!!! TTGGTTATATGCTTTTTAAG+TGG + chr4_2:60311400-60311419 Msa0611920:intron 25.0%
!! TAATTCACATTTGTTGCAAT+CGG - chr4_2:60311601-60311620 None:intergenic 25.0%
! TTTAGATTCAGATTGAGAAA+AGG + chr4_2:60311674-60311693 Msa0611920:intron 25.0%
!!! TATACTTGTCATGTTTTAGA+TGG - chr4_2:60311769-60311788 None:intergenic 25.0%
!! ATTTTCTACTTCTGTATTCT+AGG + chr4_2:60311831-60311850 Msa0611920:intron 25.0%
! CAAAGAAAAATGAAGGAAAA+AGG - chr4_2:60312099-60312118 None:intergenic 25.0%
!! TTTTTCTTTGTCATGTGATT+TGG + chr4_2:60312109-60312128 Msa0611920:intron 25.0%
! ACAAGAATGTTATCAAAACT+CGG - chr4_2:60312566-60312585 None:intergenic 25.0%
TTTGGAAAGCCCTAAAATTT+AGG + chr4_2:60310041-60310060 Msa0611920:intron 30.0%
TGACATGTTTGTGTTATGTT+TGG + chr4_2:60310392-60310411 Msa0611920:intron 30.0%
AAACATGTTACCATTAAGTG+TGG - chr4_2:60310537-60310556 None:intergenic 30.0%
AGCTATGGTATATATATGGT+TGG + chr4_2:60310573-60310592 Msa0611920:intron 30.0%
TTCATCAAGTAAGAAAAGGA+AGG + chr4_2:60310708-60310727 Msa0611920:CDS 30.0%
CCTTGATTGGATCATATATA+TGG - chr4_2:60310858-60310877 None:intergenic 30.0%
CCATATATATGATCCAATCA+AGG + chr4_2:60310855-60310874 Msa0611920:CDS 30.0%
! TGTTTCAGAATAAAGTGTCA+TGG - chr4_2:60311000-60311019 None:intergenic 30.0%
!! TGACACTTTATTCTGAAACA+AGG + chr4_2:60311000-60311019 Msa0611920:intron 30.0%
! TTACTAGTTTGCCAAAAGAA+AGG + chr4_2:60311072-60311091 Msa0611920:intron 30.0%
! GTTGTAATAACTTGTAATGG+GGG + chr4_2:60311239-60311258 Msa0611920:intron 30.0%
!!! TGCCATAGCCAATTTTTTAA+TGG + chr4_2:60311297-60311316 Msa0611920:intron 30.0%
!!! GCCATAGCCAATTTTTTAAT+GGG + chr4_2:60311298-60311317 Msa0611920:intron 30.0%
TCCCATTAAAAAATTGGCTA+TGG - chr4_2:60311302-60311321 None:intergenic 30.0%
CATATAACCAATGTTGTCTA+TGG - chr4_2:60311391-60311410 None:intergenic 30.0%
! TACCTTAGTAGAACAGTTTT+AGG + chr4_2:60311426-60311445 Msa0611920:intron 30.0%
ATCTCGTTAATGCATAAAGT+TGG + chr4_2:60311476-60311495 Msa0611920:intron 30.0%
TCAGAGAAACAAGTAACATA+TGG - chr4_2:60311515-60311534 None:intergenic 30.0%
AATAATGTTACCTTGTGTAG+AGG - chr4_2:60311650-60311669 None:intergenic 30.0%
! TATACAATAAGGTTAGTCAC+AGG + chr4_2:60311972-60311991 Msa0611920:intron 30.0%
GAAGATAGAACTGAATAGAA+GGG - chr4_2:60312019-60312038 None:intergenic 30.0%
AGAAGATAGAACTGAATAGA+AGG - chr4_2:60312020-60312039 None:intergenic 30.0%
TTTCGCTTCACATTCTTTAA+AGG + chr4_2:60312071-60312090 Msa0611920:intron 30.0%
CACATGACAAAGAAAAATGA+AGG - chr4_2:60312106-60312125 None:intergenic 30.0%
! AACATGGTGATACTATGTTT+TGG + chr4_2:60312442-60312461 Msa0611920:three_prime_UTR 30.0%
AAGAATGTTATCAAAACTCG+GGG - chr4_2:60312564-60312583 None:intergenic 30.0%
CAAGAATGTTATCAAAACTC+GGG - chr4_2:60312565-60312584 None:intergenic 30.0%
!! CTTGGTTTGTTAAAGCTTTC+TGG + chr4_2:60309683-60309702 Msa0611920:CDS 35.0%
! TAACGAGGAGTTTTTCTTGA+CGG - chr4_2:60309741-60309760 None:intergenic 35.0%
!! ATTGCTTGTTCGTGTTGTTT+CGG + chr4_2:60309872-60309891 Msa0611920:intron 35.0%
CATGATTTCATCAGACTTAG+TGG - chr4_2:60310017-60310036 None:intergenic 35.0%
CTGATGAAATCATGTGTGTT+TGG + chr4_2:60310023-60310042 Msa0611920:intron 35.0%
ACAAATCTGATGAAATCGTG+TGG + chr4_2:60310177-60310196 Msa0611920:intron 35.0%
CAAATCTGATGAAATCGTGT+GGG + chr4_2:60310178-60310197 Msa0611920:intron 35.0%
! GCTACATCGATTAAACAATG+CGG - chr4_2:60310511-60310530 None:intergenic 35.0%
ATGTTACCATTAAGTGTGGT+CGG - chr4_2:60310533-60310552 None:intergenic 35.0%
!! ATTCTGTGTTGTTTGAGCTA+TGG + chr4_2:60310558-60310577 Msa0611920:intron 35.0%
ACAATAGTTAACTGGTGGTA+GGG - chr4_2:60310656-60310675 None:intergenic 35.0%
TTGTCACAATAGTTAACTGG+TGG - chr4_2:60310661-60310680 None:intergenic 35.0%
AAGTAAGAAAAGGAAGGAAG+TGG + chr4_2:60310714-60310733 Msa0611920:CDS 35.0%
GTGGAAATTCATATACCAGA+AGG + chr4_2:60310733-60310752 Msa0611920:CDS 35.0%
GATTGGGAATTGTATGTAGA+TGG + chr4_2:60310814-60310833 Msa0611920:CDS 35.0%
GTATGTAGATGGATATGATG+AGG + chr4_2:60310825-60310844 Msa0611920:CDS 35.0%
TAGATGGATATGATGAGGAT+GGG + chr4_2:60310830-60310849 Msa0611920:CDS 35.0%
CTAAAAACCCTTCGATTCAT+AGG - chr4_2:60310965-60310984 None:intergenic 35.0%
GTTTGCCAAAAGAAAGGAAA+AGG + chr4_2:60311078-60311097 Msa0611920:intron 35.0%
! GCTTTCCTTTTCCTTTCTTT+TGG - chr4_2:60311086-60311105 None:intergenic 35.0%
ATGGGTGATATAAGATGCAA+TGG + chr4_2:60311125-60311144 Msa0611920:intron 35.0%
TGGGTGATATAAGATGCAAT+GGG + chr4_2:60311126-60311145 Msa0611920:intron 35.0%
ATAACCAATGTTGTCTATGG+TGG - chr4_2:60311388-60311407 None:intergenic 35.0%
TGCCTAAAACTGTTCTACTA+AGG - chr4_2:60311431-60311450 None:intergenic 35.0%
AACAAATGTGAATTACCCCA+AGG + chr4_2:60311606-60311625 Msa0611920:CDS 35.0%
CTACTTCTGTATTCTAGGTA+TGG + chr4_2:60311836-60311855 Msa0611920:intron 35.0%
TGCAAATTTCTCGACAAGAA+GGG - chr4_2:60311904-60311923 None:intergenic 35.0%
TTGCAAATTTCTCGACAAGA+AGG - chr4_2:60311905-60311924 None:intergenic 35.0%
AAAAATGGTTGGATGCATAC+TGG + chr4_2:60311944-60311963 Msa0611920:CDS 35.0%
! CTTTGTCATGTGATTTGGAA+TGG + chr4_2:60312114-60312133 Msa0611920:intron 35.0%
CCTTACAAACACAGATGAAA+AGG - chr4_2:60312176-60312195 None:intergenic 35.0%
! CCTTTTCATCTGTGTTTGTA+AGG + chr4_2:60312173-60312192 Msa0611920:intron 35.0%
TGTTTGTAAGGTGACGAAAT+TGG + chr4_2:60312185-60312204 Msa0611920:intron 35.0%
GTTTGTAAGGTGACGAAATT+GGG + chr4_2:60312186-60312205 Msa0611920:intron 35.0%
AGAGATCTCTGGTATTTCTT+TGG - chr4_2:60312295-60312314 None:intergenic 35.0%
AGAACAGAAACATGCCTTAA+TGG + chr4_2:60312403-60312422 Msa0611920:three_prime_UTR 35.0%
TGTAGATGTACAAGCCATTA+AGG - chr4_2:60312420-60312439 None:intergenic 35.0%
CTTGTACATCTACATGAACA+TGG + chr4_2:60312426-60312445 Msa0611920:three_prime_UTR 35.0%
TGGATATGAAGACAAGTTGT+TGG + chr4_2:60312462-60312481 Msa0611920:three_prime_UTR 35.0%
TTTAGTTAAATGGCCTAAGC+TGG - chr4_2:60312515-60312534 None:intergenic 35.0%
!! AGCAGTTTTACAGAGCATTA+AGG + chr4_2:60312606-60312625 Msa0611920:three_prime_UTR 35.0%
!! GCAGTTTTACAGAGCATTAA+GGG + chr4_2:60312607-60312626 Msa0611920:three_prime_UTR 35.0%
! GAAGAATCAGCTTCTGAAGA+TGG + chr4_2:60309530-60309549 Msa0611920:CDS 40.0%
!!! AGTTTTCGCCGTTTTGGTTT+CGG - chr4_2:60309567-60309586 None:intergenic 40.0%
CATCGCATTACGAACAGATT+CGG + chr4_2:60309621-60309640 Msa0611920:CDS 40.0%
ATCGCATTACGAACAGATTC+GGG + chr4_2:60309622-60309641 Msa0611920:CDS 40.0%
CCTAGAAGAAGAACGTCTTT+CGG - chr4_2:60309777-60309796 None:intergenic 40.0%
GTGTCTGATGTCTGATATGT+CGG - chr4_2:60309907-60309926 None:intergenic 40.0%
TCGGTCTCACTAAATGTATG+AGG - chr4_2:60310206-60310225 None:intergenic 40.0%
! TGTGAAGTGTCAGTACTATC+AGG - chr4_2:60310287-60310306 None:intergenic 40.0%
ATGATTGAATGTAGCCACGT+GGG - chr4_2:60310345-60310364 None:intergenic 40.0%
AATGATTGAATGTAGCCACG+TGG - chr4_2:60310346-60310365 None:intergenic 40.0%
CACAATAGTTAACTGGTGGT+AGG - chr4_2:60310657-60310676 None:intergenic 40.0%
CGCTTGTCACAATAGTTAAC+TGG - chr4_2:60310664-60310683 None:intergenic 40.0%
GCTCTTCAGTGTAAACTTCA+GGG - chr4_2:60310765-60310784 None:intergenic 40.0%
TGCTCTTCAGTGTAAACTTC+AGG - chr4_2:60310766-60310785 None:intergenic 40.0%
TAGGAGATTGTGAGACTGAT+TGG + chr4_2:60310797-60310816 Msa0611920:CDS 40.0%
AGGAGATTGTGAGACTGATT+GGG + chr4_2:60310798-60310817 Msa0611920:CDS 40.0%
GTAGATGGATATGATGAGGA+TGG + chr4_2:60310829-60310848 Msa0611920:CDS 40.0%
AGATGGATATGATGAGGATG+GGG + chr4_2:60310831-60310850 Msa0611920:CDS 40.0%
TGACATTTCTCTCCCTTGAT+TGG - chr4_2:60310871-60310890 None:intergenic 40.0%
GGAGAGAAATGTCATCAATG+CGG + chr4_2:60310877-60310896 Msa0611920:CDS 40.0%
GAGAGAAATGTCATCAATGC+GGG + chr4_2:60310878-60310897 Msa0611920:CDS 40.0%
TGTCATCAATGCGGGTATTA+TGG + chr4_2:60310886-60310905 Msa0611920:intron 40.0%
GGGTGATATAAGATGCAATG+GGG + chr4_2:60311127-60311146 Msa0611920:intron 40.0%
GGTGATATAAGATGCAATGG+GGG + chr4_2:60311128-60311147 Msa0611920:intron 40.0%
!!! ATGGCTTGGTGGATTTTAAG+AGG + chr4_2:60311160-60311179 Msa0611920:intron 40.0%
!!! TGGTGGATTTTAAGAGGAGA+TGG + chr4_2:60311166-60311185 Msa0611920:intron 40.0%
CGGGCATCCCATTAAAAAAT+TGG - chr4_2:60311308-60311327 None:intergenic 40.0%
AAACCATATAAGCACACCAG+TGG - chr4_2:60311348-60311367 None:intergenic 40.0%
! TCTTTTAGGCGCTTAACTGT+TGG + chr4_2:60311567-60311586 Msa0611920:intron 40.0%
AATGTGAATTACCCCAAGGA+CGG + chr4_2:60311610-60311629 Msa0611920:CDS 40.0%
TAGATGGAGTTAACTCATCG+AGG - chr4_2:60311753-60311772 None:intergenic 40.0%
AATAGCTGCCGTAGGAAAAA+TGG + chr4_2:60311929-60311948 Msa0611920:CDS 40.0%
!! GCATCCAACCATTTTTCCTA+CGG - chr4_2:60311940-60311959 None:intergenic 40.0%
CAGTTCTATCTTCTTCAGTG+TGG + chr4_2:60312026-60312045 Msa0611920:intron 40.0%
! GTCATGTGATTTGGAATGGA+AGG + chr4_2:60312118-60312137 Msa0611920:intron 40.0%
TGGAATGGAAGGCTAAGATA+TGG + chr4_2:60312129-60312148 Msa0611920:intron 40.0%
!! AGGGCTCTGAGAAGTTAAAT+AGG + chr4_2:60312363-60312382 Msa0611920:exon 40.0%
TTTGGATTCAATGCCAGCTT+AGG + chr4_2:60312499-60312518 Msa0611920:three_prime_UTR 40.0%
TTATCAAAACTCGGGGCATA+GGG - chr4_2:60312557-60312576 None:intergenic 40.0%
! GAATCAGCTTCTGAAGATGG+CGG + chr4_2:60309533-60309552 Msa0611920:CDS 45.0%
ACCAAAACGGCGAAAACTGA+AGG + chr4_2:60309569-60309588 Msa0611920:CDS 45.0%
! ACCTTCAGTTTTCGCCGTTT+TGG - chr4_2:60309573-60309592 None:intergenic 45.0%
ACGAACAGATTCGGGAACAA+AGG + chr4_2:60309630-60309649 Msa0611920:CDS 45.0%
GCTGAGAGAATGCATAAGCT+TGG + chr4_2:60309665-60309684 Msa0611920:CDS 45.0%
! AGGAGTTTTTCTTGACGGAG+GGG - chr4_2:60309736-60309755 None:intergenic 45.0%
! GAGGAGTTTTTCTTGACGGA+GGG - chr4_2:60309737-60309756 None:intergenic 45.0%
AGAACGTCTTTCGGATTCGT+TGG - chr4_2:60309768-60309787 None:intergenic 45.0%
CCGAAAGACGTTCTTCTTCT+AGG + chr4_2:60309774-60309793 Msa0611920:CDS 45.0%
ATGTAGCCGACCACACTTAA+TGG + chr4_2:60310524-60310543 Msa0611920:intron 45.0%
CTTTCTTGACGCTCTGCTTT+AGG - chr4_2:60310688-60310707 None:intergenic 45.0%
ACCCTTCGATTCATAGGTGA+GGG - chr4_2:60310959-60310978 None:intergenic 45.0%
AACCCTTCGATTCATAGGTG+AGG - chr4_2:60310960-60310979 None:intergenic 45.0%
! CCAATGTTGTCTATGGTGGA+AGG - chr4_2:60311384-60311403 None:intergenic 45.0%
CCTTCCACCATAGACAACAT+TGG + chr4_2:60311381-60311400 Msa0611920:intron 45.0%
GTTGAATCTGGAGAGATCTC+TGG - chr4_2:60312306-60312325 None:intergenic 45.0%
! CTCCAGATTCAACACTGACT+AGG + chr4_2:60312313-60312332 Msa0611920:CDS 45.0%
! GTCCTAGTCAGTGTTGAATC+TGG - chr4_2:60312318-60312337 None:intergenic 45.0%
GTTATCAAAACTCGGGGCAT+AGG - chr4_2:60312558-60312577 None:intergenic 45.0%
GAATGGGAACTCGTCGTAGA+AGG + chr4_2:60309495-60309514 Msa0611920:exon 50.0%
!!! TTTCGCCGTTTTGGTTTCGG+TGG - chr4_2:60309564-60309583 None:intergenic 50.0%
! GACGCAGGTATTGTCGTTTC+AGG + chr4_2:60309593-60309612 Msa0611920:CDS 50.0%
!!! GCGGTGTTGGTGTTTTCTTG+AGG - chr4_2:60309712-60309731 None:intergenic 50.0%
! CGAGGAGTTTTTCTTGACGG+AGG - chr4_2:60309738-60309757 None:intergenic 50.0%
! GGATTCGTTGGATGGTAACG+AGG - chr4_2:60309756-60309775 None:intergenic 50.0%
CGTCTTTCGGATTCGTTGGA+TGG - chr4_2:60309764-60309783 None:intergenic 50.0%
TTGAATGTAGCCACGTGGGT+TGG - chr4_2:60310341-60310360 None:intergenic 50.0%
ACTTCAGGGTTTGTGCCTTC+TGG - chr4_2:60310751-60310770 None:intergenic 50.0%
! GAAGAGCATGAGAAGCTGCT+AGG + chr4_2:60310778-60310797 Msa0611920:CDS 50.0%
TGCCCTCACCTATGAATCGA+AGG + chr4_2:60310954-60310973 Msa0611920:intron 50.0%
GCCCTCACCTATGAATCGAA+GGG + chr4_2:60310955-60310974 Msa0611920:intron 50.0%
! GTAATGGGGGCATGACAGAA+TGG + chr4_2:60311252-60311271 Msa0611920:intron 50.0%
CCATATAAGCACACCAGTGG+TGG - chr4_2:60311345-60311364 None:intergenic 50.0%
CCACCACTGGTGTGCTTATA+TGG + chr4_2:60311342-60311361 Msa0611920:intron 50.0%
ATCTCCACAAAGCCGTCCTT+GGG - chr4_2:60311625-60311644 None:intergenic 50.0%
AATCTCCACAAAGCCGTCCT+TGG - chr4_2:60311626-60311645 None:intergenic 50.0%
GTGGAGATTGCCTCTACACA+AGG + chr4_2:60311637-60311656 Msa0611920:CDS 50.0%
AAGCCAGCATCAATCCCAAG+TGG + chr4_2:60311873-60311892 Msa0611920:CDS 50.0%
AGTCCACTTGGGATTGATGC+TGG - chr4_2:60311879-60311898 None:intergenic 50.0%
CAAGAAGGGCAAGTCCACTT+GGG - chr4_2:60311890-60311909 None:intergenic 50.0%
ACAAGAAGGGCAAGTCCACT+TGG - chr4_2:60311891-60311910 None:intergenic 50.0%
GCTGCCGTAGGAAAAATGGT+TGG + chr4_2:60311933-60311952 Msa0611920:CDS 50.0%
! GAGGAAAGCATGGAAGGATC+AGG + chr4_2:60312252-60312271 Msa0611920:CDS 50.0%
! CACTGACTAGGACACTGAGT+AGG + chr4_2:60312325-60312344 Msa0611920:CDS 50.0%
GGACACTGAGTAGGCCAATT+CGG + chr4_2:60312334-60312353 Msa0611920:CDS 50.0%
TAGGCCAATTCGGACGAGAA+GGG + chr4_2:60312344-60312363 Msa0611920:CDS 50.0%
CGCCACCACCGAAACCAAAA+CGG + chr4_2:60309556-60309575 Msa0611920:CDS 55.0%
GCGAAAACTGAAGGTGACGC+AGG + chr4_2:60309578-60309597 Msa0611920:CDS 55.0%
! TTTTTCTTGACGGAGGGGCG+CGG - chr4_2:60309731-60309750 None:intergenic 55.0%
GACATTGACACCAACCCACG+TGG + chr4_2:60310328-60310347 Msa0611920:intron 55.0%
! GCAATGGGGGCATGACAGAA+TGG + chr4_2:60311141-60311160 Msa0611920:intron 55.0%
! GGCATGACAGAATGGCTTGG+TGG + chr4_2:60311149-60311168 Msa0611920:intron 55.0%
! GGCATGACAGAATGGCTTGG+TGG + chr4_2:60311149-60311168 Msa0611920:intron 55.0%
TTACCCCAAGGACGGCTTTG+TGG + chr4_2:60311618-60311637 Msa0611920:CDS 55.0%
TCTCCACAAAGCCGTCCTTG+GGG - chr4_2:60311624-60311643 None:intergenic 55.0%
GCAACTGCAATAGCTGCCGT+AGG + chr4_2:60311921-60311940 Msa0611920:CDS 55.0%
GATTAAGACCCGTCGCTCTG+AGG + chr4_2:60312233-60312252 Msa0611920:CDS 55.0%
CATGCTTTCCTCAGAGCGAC+GGG - chr4_2:60312244-60312263 None:intergenic 55.0%
CCATGCTTTCCTCAGAGCGA+CGG - chr4_2:60312245-60312264 None:intergenic 55.0%
!! CGCTCTGAGGAAAGCATGGA+AGG + chr4_2:60312246-60312265 Msa0611920:CDS 55.0%
GTAGGCCAATTCGGACGAGA+AGG + chr4_2:60312343-60312362 Msa0611920:CDS 55.0%
AGAGCCCTTCTCGTCCGAAT+TGG - chr4_2:60312351-60312370 None:intergenic 55.0%
!!! CGCCGTTTTGGTTTCGGTGG+TGG - chr4_2:60309561-60309580 None:intergenic 60.0%
! GGGGGCATGACAGAATGGCT+TGG + chr4_2:60311146-60311165 Msa0611920:intron 60.0%
! GGGGGCATGACAGAATGGCT+TGG + chr4_2:60311146-60311165 Msa0611920:intron 60.0%
TAATGGGATGCCCGCCGTCA+TGG + chr4_2:60311314-60311333 Msa0611920:intron 60.0%
!! CCGTCGCTCTGAGGAAAGCA+TGG + chr4_2:60312242-60312261 Msa0611920:CDS 60.0%
!! CAGTGGTGGTGCCGCCATGA+CGG - chr4_2:60311331-60311350 None:intergenic 65.0%
! TTGACGGAGGGGCGCGGTGT+TGG - chr4_2:60309725-60309744 None:intergenic 70.0%
TGGGATGCCCGCCGTCATGG+CGG + chr4_2:60311317-60311336 Msa0611920:intron 70.0%
!! TGGTGGTGCCGCCATGACGG+CGG - chr4_2:60311328-60311347 None:intergenic 70.0%
CGTCATGGCGGCACCACCAC+TGG + chr4_2:60311329-60311348 Msa0611920:intron 70.0%
!! GGTGGTGCCGCCATGACGGC+GGG - chr4_2:60311327-60311346 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 60309493 60312665 60309493 ID=Msa0611920;Name=Msa0611920
chr4_2 mRNA 60309493 60312665 60309493 ID=Msa0611920-mRNA-1;Parent=Msa0611920;Name=Msa0611920-mRNA-1;_AED=0.01;_eAED=0.01;_QI=4|1|1|1|1|1|5|285|317
chr4_2 exon 60309493 60309795 60309493 ID=Msa0611920-mRNA-1:exon:16153;Parent=Msa0611920-mRNA-1
chr4_2 exon 60310645 60310899 60310645 ID=Msa0611920-mRNA-1:exon:16154;Parent=Msa0611920-mRNA-1
chr4_2 exon 60311575 60311658 60311575 ID=Msa0611920-mRNA-1:exon:16155;Parent=Msa0611920-mRNA-1
chr4_2 exon 60311853 60311982 60311853 ID=Msa0611920-mRNA-1:exon:16156;Parent=Msa0611920-mRNA-1
chr4_2 exon 60312195 60312665 60312195 ID=Msa0611920-mRNA-1:exon:16157;Parent=Msa0611920-mRNA-1
chr4_2 five_prime_UTR 60309493 60309496 60309493 ID=Msa0611920-mRNA-1:five_prime_utr;Parent=Msa0611920-mRNA-1
chr4_2 CDS 60309497 60309795 60309497 ID=Msa0611920-mRNA-1:cds;Parent=Msa0611920-mRNA-1
chr4_2 CDS 60310645 60310899 60310645 ID=Msa0611920-mRNA-1:cds;Parent=Msa0611920-mRNA-1
chr4_2 CDS 60311575 60311658 60311575 ID=Msa0611920-mRNA-1:cds;Parent=Msa0611920-mRNA-1
chr4_2 CDS 60311853 60311982 60311853 ID=Msa0611920-mRNA-1:cds;Parent=Msa0611920-mRNA-1
chr4_2 CDS 60312195 60312380 60312195 ID=Msa0611920-mRNA-1:cds;Parent=Msa0611920-mRNA-1
chr4_2 three_prime_UTR 60312381 60312665 60312381 ID=Msa0611920-mRNA-1:three_prime_utr;Parent=Msa0611920-mRNA-1
Gene Sequence

>Msa0611920

ATGGGAACTCGTCGTAGAAGGAGAAGCGAAGAAGAAGAATCAGCTTCTGAAGATGGCGGCGCCACCACCGAAACCAAAACGGCGAAAACTGAAGGTGACGCAGGTATTGTCGTTTCAGGTTCATCATCGCATTACGAACAGATTCGGGAACAAAGGATGAAAGAGAACGCTGAGAGAATGCATAAGCTTGGTTTGTTAAAGCTTTCTGGTAACCTCAAGAAAACACCAACACCGCGCCCCTCCGTCAAGAAAAACTCCTCGTTACCATCCAACGAATCCGAAAGACGTTCTTCTTCTAGACTATCGACCCTACCACCAGTTAACTATTGTGACAAGCGTCCTAAAGCAGAGCGTCAAGAAAGTTCATCAAGTAAGAAAAGGAAGGAAGTGGAAATTCATATACCAGAAGGCACAAACCCTGAAGTTTACACTGAAGAGCATGAGAAGCTGCTAGGAGATTGTGAGACTGATTGGGAATTGTATGTAGATGGATATGATGAGGATGGGGACCATATATATGATCCAATCAAGGGAGAGAAATGTCATCAATGCGGGCGCTTAACTGTTGGTCAGCTGACCGATTGCAACAAATGTGAATTACCCCAAGGACGGCTTTGTGGAGATTGCCTCTACACAAGGTATGGAGAAAATGTGACAGAAGCCAGCATCAATCCCAAGTGGACTTGCCCTTCTTGTCGAGAAATTTGCAACTGCAATAGCTGCCGTAGGAAAAATGGTTGGATGCATACTGGTAATATATACAATAAGGTGACGAAATTGGGTTTCAAATCTGTTGCTCATTATCTGATTAAGACCCGTCGCTCTGAGGAAAGCATGGAAGGATCAGGTGCTGAAAATAATGTTGCCAAAGAAATACCAGAGATCTCTCCAGATTCAACACTGACTAGGACACTGAGTAGGCCAATTCGGACGAGAAGGGCTCTGAGAAGTTAA

Protein sequence

>Msa0611920

MGTRRRRRSEEEESASEDGGATTETKTAKTEGDAGIVVSGSSSHYEQIREQRMKENAERMHKLGLLKLSGNLKKTPTPRPSVKKNSSLPSNESERRSSSRLSTLPPVNYCDKRPKAERQESSSSKKRKEVEIHIPEGTNPEVYTEEHEKLLGDCETDWELYVDGYDEDGDHIYDPIKGEKCHQCGRLTVGQLTDCNKCELPQGRLCGDCLYTRYGENVTEASINPKWTCPSCREICNCNSCRRKNGWMHTGNIYNKVTKLGFKSVAHYLIKTRRSEESMEGSGAENNVAKEIPEISPDSTLTRTLSRPIRTRRALRS*