Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556540 | XP_003608058.1 | 92.715 | 302 | 19 | 3 | 17 | 317 | 20 | 319 | 0.0 | 559 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556540 | sp|Q922M5|CDA7L_MOUSE | 44.118 | 102 | 55 | 1 | 170 | 269 | 330 | 431 | 1.01e-22 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556540 | G7JNK7 | 92.715 | 302 | 19 | 3 | 17 | 317 | 20 | 319 | 0.0 | 559 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016040 | Msa0556540 | 0.807621 | 4.623108e-50 | -8.615850e-47 |
| Msa0025580 | Msa0556540 | 0.816250 | 6.091344e-52 | -8.615850e-47 |
| Msa0035140 | Msa0556540 | 0.807781 | 4.274901e-50 | -8.615850e-47 |
| Msa0053070 | Msa0556540 | 0.815921 | 7.215516e-52 | -8.615850e-47 |
| Msa0121330 | Msa0556540 | 0.810063 | 1.388326e-50 | -8.615850e-47 |
| Msa0140280 | Msa0556540 | 0.807384 | 5.189451e-50 | -8.615850e-47 |
| Msa0367520 | Msa0556540 | 0.812422 | 4.273547e-51 | -8.615850e-47 |
| Msa0389950 | Msa0556540 | 0.825582 | 4.332912e-54 | -8.615850e-47 |
| Msa0430300 | Msa0556540 | 0.804971 | 1.671832e-49 | -8.615850e-47 |
| Msa0481890 | Msa0556540 | 0.804197 | 2.425171e-49 | -8.615850e-47 |
| Msa0298470 | Msa0556540 | 0.801430 | 9.037258e-49 | -8.615850e-47 |
| Msa0353950 | Msa0556540 | 0.804820 | 1.797771e-49 | -8.615850e-47 |
| Msa0556540 | Msa0567170 | 0.822899 | 1.850080e-53 | -8.615850e-47 |
| Msa0556540 | Msa0571620 | 0.805421 | 1.345709e-49 | -8.615850e-47 |
| Msa0556540 | Msa0606100 | 0.826691 | 2.360802e-54 | -8.615850e-47 |
| Msa0556540 | Msa0611920 | 0.863173 | 3.006879e-64 | -8.615850e-47 |
| Msa0556540 | Msa0621710 | 0.816133 | 6.470346e-52 | -8.615850e-47 |
| Msa0556540 | Msa0647050 | 0.801745 | 7.788457e-49 | -8.615850e-47 |
| Msa0556540 | Msa0652070 | 0.972361 | 1.219347e-134 | -8.615850e-47 |
| Msa0556540 | Msa0658640 | 0.802945 | 4.409531e-49 | -8.615850e-47 |
| Msa0556540 | Msa0666700 | 0.800023 | 1.750903e-48 | -8.615850e-47 |
| Msa0556540 | Msa0694630 | 0.947148 | 1.179802e-105 | -8.615850e-47 |
| Msa0556540 | Msa0703600 | 0.808807 | 2.582519e-50 | -8.615850e-47 |
| Msa0556540 | Msa0709200 | 0.811911 | 5.523527e-51 | -8.615850e-47 |
| Msa0556540 | Msa0709440 | 0.803937 | 2.746603e-49 | -8.615850e-47 |
| Msa0556540 | Msa0743440 | 0.806462 | 8.131834e-50 | -8.615850e-47 |
| Msa0556540 | Msa0747740 | 0.817598 | 3.034614e-52 | -8.615850e-47 |
| Msa0556540 | Msa0773630 | 0.832143 | 1.118385e-55 | -8.615850e-47 |
| Msa0556540 | Msa0780910 | 0.805994 | 1.020075e-49 | -8.615850e-47 |
| Msa0556540 | Msa0800660 | 0.818348 | 2.054455e-52 | -8.615850e-47 |
| Msa0556540 | Msa0818880 | 0.819614 | 1.058754e-52 | -8.615850e-47 |
| Msa0556540 | Msa0863620 | 0.823099 | 1.662446e-53 | -8.615850e-47 |
| Msa0556540 | Msa0909760 | 0.808124 | 3.612788e-50 | -8.615850e-47 |
| Msa0556540 | Msa0931590 | 0.802155 | 6.414921e-49 | -8.615850e-47 |
| Msa0556540 | Msa0966320 | 0.822481 | 2.315071e-53 | -8.615850e-47 |
| Msa0556540 | Msa0966480 | 0.823594 | 1.273152e-53 | -8.615850e-47 |
| Msa0556540 | Msa1042880 | 0.817445 | 3.286127e-52 | -8.615850e-47 |
| Msa0556540 | Msa1078880 | 0.807742 | 4.357448e-50 | -8.615850e-47 |
| Msa0556540 | Msa1078970 | 0.808959 | 2.396881e-50 | -8.615850e-47 |
| Msa0556540 | Msa1084530 | 0.810837 | 9.450429e-51 | -8.615850e-47 |
| Msa0556540 | Msa1116660 | 0.805316 | 1.415701e-49 | -8.615850e-47 |
| Msa0556540 | Msa1125820 | 0.813247 | 2.819147e-51 | -8.615850e-47 |
| Msa0556540 | Msa1125990 | 0.811196 | 7.902687e-51 | -8.615850e-47 |
| Msa0556540 | Msa1132530 | 0.814097 | 1.832440e-51 | -8.615850e-47 |
| Msa0556540 | Msa1169190 | 0.802261 | 6.101620e-49 | -8.615850e-47 |
| Msa0556540 | Msa1171290 | 0.800799 | 1.216424e-48 | -8.615850e-47 |
| Msa0556540 | Msa1214350 | 0.814571 | 1.439610e-51 | -8.615850e-47 |
| Msa0556540 | Msa1226520 | 0.802298 | 5.993887e-49 | -8.615850e-47 |
| Msa0556540 | Msa1244240 | 0.824927 | 6.190945e-54 | -8.615850e-47 |
| Msa0556540 | Msa1446100 | 0.803383 | 3.579507e-49 | -8.615850e-47 |
| Msa0556540 | Msa1447170 | 0.836511 | 8.966764e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556540 | MtrunA17_Chr4g0045521 | 92.715 | 302 | 19 | 3 | 17 | 317 | 20 | 319 | 0.0 | 559 |
| Msa0556540 | MtrunA17_Chr5g0402951 | 50.617 | 243 | 108 | 3 | 43 | 280 | 29 | 264 | 1.89e-78 | 244 |
| Msa0556540 | MtrunA17_Chr5g0402961 | 50.000 | 240 | 107 | 2 | 43 | 276 | 30 | 262 | 1.67e-69 | 222 |
| Msa0556540 | MtrunA17_Chr6g0479091 | 28.421 | 285 | 149 | 10 | 41 | 270 | 7 | 291 | 9.19e-17 | 79.3 |
| Msa0556540 | MtrunA17_Chr6g0457221 | 36.066 | 122 | 67 | 3 | 169 | 284 | 34 | 150 | 1.05e-16 | 80.9 |
| Msa0556540 | MtrunA17_Chr6g0457161 | 33.088 | 136 | 74 | 4 | 169 | 292 | 43 | 173 | 4.99e-15 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0556540 | AT2G23530.1 | 49.796 | 245 | 97 | 5 | 43 | 275 | 29 | 259 | 8.04e-72 | 232 |
| Msa0556540 | AT4G37110.1 | 45.385 | 260 | 115 | 5 | 43 | 280 | 29 | 283 | 9.04e-69 | 220 |
| Msa0556540 | AT4G37110.2 | 47.773 | 247 | 115 | 5 | 43 | 280 | 29 | 270 | 3.77e-68 | 218 |
| Msa0556540 | AT4G37110.3 | 51.099 | 182 | 83 | 3 | 100 | 280 | 12 | 188 | 3.45e-61 | 198 |
| Msa0556540 | AT4G37110.4 | 51.099 | 182 | 83 | 3 | 100 | 280 | 12 | 188 | 3.45e-61 | 198 |
| Msa0556540 | AT1G67780.2 | 34.307 | 137 | 71 | 3 | 169 | 299 | 23 | 146 | 1.08e-16 | 80.9 |
| Msa0556540 | AT1G67780.1 | 34.307 | 137 | 71 | 3 | 169 | 299 | 23 | 146 | 1.08e-16 | 80.9 |
| Msa0556540 | AT5G38690.2 | 37.624 | 101 | 60 | 1 | 172 | 269 | 23 | 123 | 4.82e-14 | 73.2 |
| Msa0556540 | AT5G38690.1 | 37.624 | 101 | 60 | 1 | 172 | 269 | 23 | 123 | 4.82e-14 | 73.2 |
| Msa0556540 | AT1G67270.1 | 36.538 | 104 | 63 | 1 | 169 | 269 | 15 | 118 | 1.30e-13 | 71.6 |
Find 92 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGTTTGTTAAAGCTTTC+TGG | 0.081932 | 4_1:+54796420 | Msa0556540:CDS |
| GACGAAGGTGTTGTCGTTTC+AGG | 0.147931 | 4_1:+54796330 | Msa0556540:CDS |
| CTGAAAGACGTTCTTCTTCT+AGG | 0.197268 | 4_1:+54796511 | Msa0556540:CDS |
| CTTTCTTGACGCTCTGCTTT+AGG | 0.267050 | 4_1:-54797424 | None:intergenic |
| ACTTCAGGGTTTGTGCCTTC+TGG | 0.274892 | 4_1:-54797487 | None:intergenic |
| TGCTCTTCAGTGTAAACTTC+AGG | 0.282121 | 4_1:-54797502 | None:intergenic |
| AGAACAGAAACATGCCTTAA+TGG | 0.296929 | 4_1:+54799142 | Msa0556540:three_prime_UTR |
| AGAGATCTCTGGTATTTCTT+TGG | 0.321827 | 4_1:-54799031 | None:intergenic |
| TGTTTGTAAGGTGACGAAAT+TGG | 0.331250 | 4_1:+54798924 | Msa0556540:intron |
| TGACATTTCTCTCCCTTGAT+TGG | 0.343032 | 4_1:-54797607 | None:intergenic |
| TGTAGATGTACAAGCCATTA+AGG | 0.354364 | 4_1:-54799156 | None:intergenic |
| ATCTCCACAAAGCCGTCCTT+GGG | 0.359404 | 4_1:-54798361 | None:intergenic |
| TACTGGTAATATATACAATA+AGG | 0.364939 | 4_1:+54798700 | Msa0556540:CDS |
| CCTTGATTGGATCATATATA+TGG | 0.370088 | 4_1:-54797594 | None:intergenic |
| AAGATGGTGATACTATGTTT+TGG | 0.372791 | 4_1:+54799181 | Msa0556540:three_prime_UTR |
| AGGGCTCTGAGAAGTTAAAT+AGG | 0.387414 | 4_1:+54799102 | Msa0556540:exon |
| GCTGAGAGAGTGTGAGAGAA+TGG | 0.391361 | 4_1:+54796215 | None:intergenic |
| GATTGGGAATTGTATGTAGA+TGG | 0.394321 | 4_1:+54797553 | Msa0556540:CDS |
| GAATGGGAACTCGTCGTAGA+AGG | 0.402667 | 4_1:+54796232 | Msa0556540:exon |
| TAGGAGATTGTGAGACTGAT+TGG | 0.407394 | 4_1:+54797536 | Msa0556540:CDS |
| GTCCTAGTCAGTGTTGAATC+TGG | 0.411891 | 4_1:-54799054 | None:intergenic |
| CGCTTGTCACAATAGTTAAC+TGG | 0.416480 | 4_1:-54797400 | None:intergenic |
| TGGATATGAAGACAAGTTGT+TGG | 0.417896 | 4_1:+54799201 | Msa0556540:three_prime_UTR |
| TTGACGGAGGGGCGCGGTGT+TGG | 0.424322 | 4_1:-54796459 | None:intergenic |
| AATCTCCACAAAGCCGTCCT+TGG | 0.429942 | 4_1:-54798362 | None:intergenic |
| CATCGCATTACGAACAGATT+CGG | 0.430803 | 4_1:+54796358 | Msa0556540:CDS |
| AGAGCCCTTCTCGTCCGAAT+TGG | 0.433546 | 4_1:-54799087 | None:intergenic |
| GCTCTTCAGTGTAAACTTCA+GGG | 0.440452 | 4_1:-54797501 | None:intergenic |
| TAATTCACATTTGTTGCAAT+CGG | 0.441018 | 4_1:-54798337 | None:intergenic |
| ATCGCATTACGAACAGATTC+GGG | 0.446329 | 4_1:+54796359 | Msa0556540:CDS |
| TTTGGATTCAATGCCAGCTT+AGG | 0.447077 | 4_1:+54799238 | Msa0556540:three_prime_UTR |
| AGTCCACTTGGGATTGATGC+TGG | 0.452136 | 4_1:-54798615 | None:intergenic |
| TTTAGTTAAATGGCCTAAGC+TGG | 0.462486 | 4_1:-54799251 | None:intergenic |
| CGCCACCACCGAAACCAAAA+CGG | 0.463153 | 4_1:+54796293 | Msa0556540:CDS |
| GTTATCAAAACTCGGGGCAT+AGG | 0.463673 | 4_1:-54799294 | None:intergenic |
| AGAACGTCTTTCAGATTCGT+TGG | 0.472148 | 4_1:-54796502 | None:intergenic |
| AAAGTTCATCAAGTAAGAAA+AGG | 0.473277 | 4_1:+54797443 | Msa0556540:CDS |
| GGACACTGAGTAGGCCAATT+CGG | 0.474533 | 4_1:+54799073 | Msa0556540:CDS |
| CATGCTTTCCTCAGAGCGAC+GGG | 0.474902 | 4_1:-54798980 | None:intergenic |
| GAAGAATCAGCTTCTGAAGA+TGG | 0.476470 | 4_1:+54796267 | Msa0556540:CDS |
| TTACCCCAAGGACGGCTTTG+TGG | 0.478556 | 4_1:+54798357 | Msa0556540:CDS |
| GAGGAAAGCATGGAAGGATC+AGG | 0.480538 | 4_1:+54798991 | Msa0556540:CDS |
| CGTCTTTCAGATTCGTTGGA+TGG | 0.488192 | 4_1:-54796498 | None:intergenic |
| CCATGCTTTCCTCAGAGCGA+CGG | 0.490576 | 4_1:-54798981 | None:intergenic |
| ACAAGAAGGGCAAGTCCACT+TGG | 0.490962 | 4_1:-54798627 | None:intergenic |
| GTTTGTAAGGTGACGAAATT+GGG | 0.490978 | 4_1:+54798925 | Msa0556540:intron |
| GTTGAATCTGGAGAGATCTC+TGG | 0.493207 | 4_1:-54799042 | None:intergenic |
| TTATCAAAACTCGGGGCATA+GGG | 0.497961 | 4_1:-54799293 | None:intergenic |
| CTGAGAGAGTGTGAGAGAAT+GGG | 0.498766 | 4_1:+54796216 | None:intergenic |
| TTGCAAATTTCTCGACAAGA+AGG | 0.509937 | 4_1:-54798641 | None:intergenic |
| CGCTCTGAGGAAAGCATGGA+AGG | 0.514423 | 4_1:+54798985 | Msa0556540:CDS |
| AAGTAAGAAAAGGAAGGAAG+TGG | 0.520203 | 4_1:+54797453 | Msa0556540:CDS |
| CCATATATATGATCCAATCA+AGG | 0.520783 | 4_1:+54797594 | Msa0556540:CDS |
| TGCAAATTTCTCGACAAGAA+GGG | 0.527573 | 4_1:-54798640 | None:intergenic |
| ACCAAAACGGCGAAAACTGA+CGG | 0.544413 | 4_1:+54796306 | Msa0556540:CDS |
| GCTGAGAGAATGCATAAGCT+TGG | 0.545658 | 4_1:+54796402 | Msa0556540:CDS |
| CAAGAATGTTATCAAAACTC+GGG | 0.546403 | 4_1:-54799301 | None:intergenic |
| TAGATGGATATGATGAGGAT+GGG | 0.547781 | 4_1:+54797569 | Msa0556540:CDS |
| GTAGATGGATATGATGAGGA+TGG | 0.552923 | 4_1:+54797568 | Msa0556540:CDS |
| GTAGGCCAATTCGGACGAGA+AGG | 0.559902 | 4_1:+54799082 | Msa0556540:CDS |
| AGGAGATTGTGAGACTGATT+GGG | 0.560044 | 4_1:+54797537 | Msa0556540:CDS |
| GAGAGAAATGTCATCAATGC+GGG | 0.565621 | 4_1:+54797617 | Msa0556540:CDS |
| CACAATAGTTAACTGGTGGT+AGG | 0.567871 | 4_1:-54797393 | None:intergenic |
| CCGTCGCTCTGAGGAAAGCA+TGG | 0.568211 | 4_1:+54798981 | Msa0556540:CDS |
| CTCCAGATTCAACACTGACT+AGG | 0.570452 | 4_1:+54799052 | Msa0556540:CDS |
| ACAATAGTTAACTGGTGGTA+GGG | 0.571951 | 4_1:-54797392 | None:intergenic |
| GAAGAGCATGAGAAGCTGCT+AGG | 0.582500 | 4_1:+54797517 | Msa0556540:CDS |
| TTCATCAAGTAAGAAAAGGA+AGG | 0.585443 | 4_1:+54797447 | Msa0556540:CDS |
| CTTGTACATCTACACGAAGA+TGG | 0.587597 | 4_1:+54799165 | Msa0556540:three_prime_UTR |
| AATAATGTTACCTTGTGTAG+AGG | 0.592456 | 4_1:-54798386 | None:intergenic |
| ACAAGAATGTTATCAAAACT+CGG | 0.594529 | 4_1:-54799302 | None:intergenic |
| TAGGCCAATTCGGACGAGAA+GGG | 0.596764 | 4_1:+54799083 | Msa0556540:CDS |
| ACGAACAGATTCGGGAACAA+AGG | 0.601062 | 4_1:+54796367 | Msa0556540:CDS |
| GTGGAGATTGCCTCTACACA+AGG | 0.601803 | 4_1:+54798376 | Msa0556540:CDS |
| GTGGAAATTCATATACCAGA+AGG | 0.609129 | 4_1:+54797472 | Msa0556540:CDS |
| CATATATATGATCCAATCAA+GGG | 0.618648 | 4_1:+54797595 | Msa0556540:CDS |
| CAAGAAGGGCAAGTCCACTT+GGG | 0.625978 | 4_1:-54798626 | None:intergenic |
| AGATTCGTTGGATGGTAACG+AGG | 0.637828 | 4_1:-54796490 | None:intergenic |
| GATTAAGACCCGTCGCTCTG+AGG | 0.643030 | 4_1:+54798972 | Msa0556540:CDS |
| GCAACTGCAATAGCTGCCGT+AGG | 0.655636 | 4_1:+54798660 | Msa0556540:CDS |
| GCGAAAACTGACGGTGACGA+AGG | 0.663376 | 4_1:+54796315 | Msa0556540:CDS |
| AGATGGATATGATGAGGATG+GGG | 0.664541 | 4_1:+54797570 | Msa0556540:CDS |
| AATGTGAATTACCCCAAGGA+CGG | 0.664710 | 4_1:+54798349 | Msa0556540:CDS |
| AAGCCAGCATCAATCCCAAG+TGG | 0.668388 | 4_1:+54798612 | Msa0556540:CDS |
| GAATCAGCTTCTGAAGATGG+CGG | 0.676548 | 4_1:+54796270 | Msa0556540:CDS |
| AACAAATGTGAATTACCCCA+AGG | 0.685873 | 4_1:+54798345 | Msa0556540:CDS |
| AAGAATGTTATCAAAACTCG+GGG | 0.686682 | 4_1:-54799300 | None:intergenic |
| TTGTCACAATAGTTAACTGG+TGG | 0.697560 | 4_1:-54797397 | None:intergenic |
| TCTCCACAAAGCCGTCCTTG+GGG | 0.703752 | 4_1:-54798360 | None:intergenic |
| GGAGAGAAATGTCATCAATG+CGG | 0.712891 | 4_1:+54797616 | Msa0556540:CDS |
| CACTGACTAGGACACTGAGT+AGG | 0.718098 | 4_1:+54799064 | Msa0556540:CDS |
| GTATGTAGATGGATATGATG+AGG | 0.739576 | 4_1:+54797564 | Msa0556540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAAATTTTATGTATTAATT+AGG | + | chr4_1:54796722-54796741 | Msa0556540:intron | 10.0% |
| !!! | TAATTTTTTTTATGTTTGAT+TGG | + | chr4_1:54797354-54797373 | Msa0556540:intron | 10.0% |
| !!! | GTTTATCTATTTATTGATTA+TGG | + | chr4_1:54796700-54796719 | Msa0556540:intron | 15.0% |
| !! | ATATTCTATTTAACTAAACA+TGG | + | chr4_1:54797845-54797864 | Msa0556540:intron | 15.0% |
| !! | TATTCTATTTAACTAAACAT+GGG | + | chr4_1:54797846-54797865 | Msa0556540:intron | 15.0% |
| !!! | ATGATGTTTTATATTGAATT+TGG | - | chr4_1:54797931-54797950 | None:intergenic | 15.0% |
| !! | AAATTCAATATAAAACATCA+TGG | + | chr4_1:54797930-54797949 | Msa0556540:intron | 15.0% |
| !!! | AAAATCATTTGTTTTCTTTT+AGG | + | chr4_1:54798292-54798311 | Msa0556540:intron | 15.0% |
| !!! | AAACTTCATTATGTAGTTTT+CGG | - | chr4_1:54796812-54796831 | None:intergenic | 20.0% |
| !! | TCAACTAATAAACATATGTT+TGG | - | chr4_1:54796891-54796910 | None:intergenic | 20.0% |
| !! | CTATCAATTGAAAATCATAT+CGG | - | chr4_1:54796966-54796985 | None:intergenic | 20.0% |
| !! | CCAATAATAGTTAGAAAAAA+TGG | - | chr4_1:54797110-54797129 | None:intergenic | 20.0% |
| !!! | CCATTTTTTCTAACTATTAT+TGG | + | chr4_1:54797107-54797126 | Msa0556540:intron | 20.0% |
| !! | TTCTATCATATCATATACTA+AGG | - | chr4_1:54797222-54797241 | None:intergenic | 20.0% |
| !!! | TAAGTTGTAATAACTTGTAA+TGG | + | chr4_1:54797975-54797994 | Msa0556540:intron | 20.0% |
| !!! | AAGTTGTAATAACTTGTAAT+GGG | + | chr4_1:54797976-54797995 | Msa0556540:intron | 20.0% |
| !! | TACTGGTAATATATACAATA+AGG | + | chr4_1:54798700-54798719 | Msa0556540:CDS | 20.0% |
| !!! | TTGGTTTTCTTATTTTTGTT+TGG | + | chr4_1:54799220-54799239 | Msa0556540:three_prime_UTR | 20.0% |
| !!! | GTTTTAGACTTTTAGTTAAA+TGG | - | chr4_1:54799264-54799283 | None:intergenic | 20.0% |
| ! | TATCACTATTTATTGCTTGT+TGG | + | chr4_1:54796588-54796607 | Msa0556540:intron | 25.0% |
| ! | TTTGGAAAACCCTAAAATTT+CGG | + | chr4_1:54796782-54796801 | Msa0556540:intron | 25.0% |
| !! | CGATATGATTTTCAATTGAT+AGG | + | chr4_1:54796964-54796983 | Msa0556540:intron | 25.0% |
| ! | TTTGAGCTATGGTATATATA+TGG | + | chr4_1:54797308-54797327 | Msa0556540:intron | 25.0% |
| ! | AAAGTTCATCAAGTAAGAAA+AGG | + | chr4_1:54797443-54797462 | Msa0556540:CDS | 25.0% |
| ! | CATATATATGATCCAATCAA+GGG | + | chr4_1:54797595-54797614 | Msa0556540:CDS | 25.0% |
| !! | AGTTGTAATAACTTGTAATG+GGG | + | chr4_1:54797977-54797996 | Msa0556540:intron | 25.0% |
| !! | TAATTCACATTTGTTGCAAT+CGG | - | chr4_1:54798340-54798359 | None:intergenic | 25.0% |
| ! | TTTAGATTCAGATTGAGAAA+AGG | + | chr4_1:54798413-54798432 | Msa0556540:intron | 25.0% |
| !!! | TATACTTGTCATGTTTTAGA+TGG | - | chr4_1:54798508-54798527 | None:intergenic | 25.0% |
| !! | ATTTTCTACTTCTGTATTCT+AGG | + | chr4_1:54798570-54798589 | Msa0556540:intron | 25.0% |
| ! | CAAAGAAAAATGAAGGAATA+AGG | - | chr4_1:54798838-54798857 | None:intergenic | 25.0% |
| !! | TTTTTCTTTGTCATGTGATT+TGG | + | chr4_1:54798848-54798867 | Msa0556540:intron | 25.0% |
| ! | ACAAGAATGTTATCAAAACT+CGG | - | chr4_1:54799305-54799324 | None:intergenic | 25.0% |
| TCACATACACTTCTGATTAA+AGG | - | chr4_1:54796658-54796677 | None:intergenic | 30.0% | |
| ! | TTCGGATAACCGAAATTTTA+GGG | - | chr4_1:54796794-54796813 | None:intergenic | 30.0% |
| ! | TTTCGGATAACCGAAATTTT+AGG | - | chr4_1:54796795-54796814 | None:intergenic | 30.0% |
| TGACATGTTTGTGTTATGTT+TGG | + | chr4_1:54797133-54797152 | Msa0556540:intron | 30.0% | |
| AAACATGTTACCATTAAGTG+TGG | - | chr4_1:54797276-54797295 | None:intergenic | 30.0% | |
| AGCTATGGTATATATATGGT+TGG | + | chr4_1:54797312-54797331 | Msa0556540:intron | 30.0% | |
| TTCATCAAGTAAGAAAAGGA+AGG | + | chr4_1:54797447-54797466 | Msa0556540:CDS | 30.0% | |
| CCTTGATTGGATCATATATA+TGG | - | chr4_1:54797597-54797616 | None:intergenic | 30.0% | |
| CCATATATATGATCCAATCA+AGG | + | chr4_1:54797594-54797613 | Msa0556540:CDS | 30.0% | |
| ! | TGTTTCAGAATAAAGTGTCA+TGG | - | chr4_1:54797739-54797758 | None:intergenic | 30.0% |
| !! | TGACACTTTATTCTGAAACA+AGG | + | chr4_1:54797739-54797758 | Msa0556540:intron | 30.0% |
| ! | TTACTAGTTTGCCAAAAGAA+AGG | + | chr4_1:54797811-54797830 | Msa0556540:intron | 30.0% |
| ! | GTTGTAATAACTTGTAATGG+GGG | + | chr4_1:54797978-54797997 | Msa0556540:intron | 30.0% |
| !!! | TTGGTTCTATGCTTTTTAAG+TGG | + | chr4_1:54798139-54798158 | Msa0556540:intron | 30.0% |
| ! | TACCTTAGTAGAACAGTTTT+AGG | + | chr4_1:54798165-54798184 | Msa0556540:intron | 30.0% |
| ATCTCGTTAATGCATAAAGT+TGG | + | chr4_1:54798215-54798234 | Msa0556540:intron | 30.0% | |
| TCAGAGAAACAAGTAACATA+TGG | - | chr4_1:54798254-54798273 | None:intergenic | 30.0% | |
| AATAATGTTACCTTGTGTAG+AGG | - | chr4_1:54798389-54798408 | None:intergenic | 30.0% | |
| ! | TATACAATAAGGTTAGTCAC+AGG | + | chr4_1:54798711-54798730 | Msa0556540:intron | 30.0% |
| GAAGATAGAACTGAATAGAA+GGG | - | chr4_1:54798758-54798777 | None:intergenic | 30.0% | |
| AGAAGATAGAACTGAATAGA+AGG | - | chr4_1:54798759-54798778 | None:intergenic | 30.0% | |
| TTTCGCTTCACATTCTTTAA+AGG | + | chr4_1:54798810-54798829 | Msa0556540:intron | 30.0% | |
| CACATGACAAAGAAAAATGA+AGG | - | chr4_1:54798845-54798864 | None:intergenic | 30.0% | |
| ! | AAGATGGTGATACTATGTTT+TGG | + | chr4_1:54799181-54799200 | Msa0556540:three_prime_UTR | 30.0% |
| AAGAATGTTATCAAAACTCG+GGG | - | chr4_1:54799303-54799322 | None:intergenic | 30.0% | |
| CAAGAATGTTATCAAAACTC+GGG | - | chr4_1:54799304-54799323 | None:intergenic | 30.0% | |
| !! | CTTGGTTTGTTAAAGCTTTC+TGG | + | chr4_1:54796420-54796439 | Msa0556540:CDS | 35.0% |
| ! | TAACGAGGAGTTTTTCTTGA+CGG | - | chr4_1:54796478-54796497 | None:intergenic | 35.0% |
| TCCAAACACATGATTTCATC+AGG | - | chr4_1:54796768-54796787 | None:intergenic | 35.0% | |
| ACAAATCTGATGAAATCGTG+CGG | + | chr4_1:54796918-54796937 | Msa0556540:intron | 35.0% | |
| ! | GCTACATCGATTAAACAATG+CGG | - | chr4_1:54797250-54797269 | None:intergenic | 35.0% |
| ATGTTACCATTAAGTGTGGT+CGG | - | chr4_1:54797272-54797291 | None:intergenic | 35.0% | |
| !! | ATTCTGTGTTGTTTGAGCTA+TGG | + | chr4_1:54797297-54797316 | Msa0556540:intron | 35.0% |
| ACAATAGTTAACTGGTGGTA+GGG | - | chr4_1:54797395-54797414 | None:intergenic | 35.0% | |
| TTGTCACAATAGTTAACTGG+TGG | - | chr4_1:54797400-54797419 | None:intergenic | 35.0% | |
| AAGTAAGAAAAGGAAGGAAG+TGG | + | chr4_1:54797453-54797472 | Msa0556540:CDS | 35.0% | |
| GTGGAAATTCATATACCAGA+AGG | + | chr4_1:54797472-54797491 | Msa0556540:CDS | 35.0% | |
| GATTGGGAATTGTATGTAGA+TGG | + | chr4_1:54797553-54797572 | Msa0556540:CDS | 35.0% | |
| GTATGTAGATGGATATGATG+AGG | + | chr4_1:54797564-54797583 | Msa0556540:CDS | 35.0% | |
| TAGATGGATATGATGAGGAT+GGG | + | chr4_1:54797569-54797588 | Msa0556540:CDS | 35.0% | |
| CTAAAAACCCTTCGATTCAT+AGG | - | chr4_1:54797704-54797723 | None:intergenic | 35.0% | |
| GTTTGCCAAAAGAAAGGAAA+AGG | + | chr4_1:54797817-54797836 | Msa0556540:intron | 35.0% | |
| ! | GCTTTCCTTTTCCTTTCTTT+TGG | - | chr4_1:54797825-54797844 | None:intergenic | 35.0% |
| ATGGGTGATATAAGATGCAA+TGG | + | chr4_1:54797864-54797883 | Msa0556540:intron | 35.0% | |
| TGGGTGATATAAGATGCAAT+GGG | + | chr4_1:54797865-54797884 | Msa0556540:intron | 35.0% | |
| !!! | TGCCACAGCCAATTTTTTAA+TGG | + | chr4_1:54798036-54798055 | Msa0556540:intron | 35.0% |
| !!! | GCCACAGCCAATTTTTTAAT+GGG | + | chr4_1:54798037-54798056 | Msa0556540:intron | 35.0% |
| TCCCATTAAAAAATTGGCTG+TGG | - | chr4_1:54798041-54798060 | None:intergenic | 35.0% | |
| CATAGAACCAATGTTGTCTA+TGG | - | chr4_1:54798130-54798149 | None:intergenic | 35.0% | |
| TGCCTAAAACTGTTCTACTA+AGG | - | chr4_1:54798170-54798189 | None:intergenic | 35.0% | |
| AACAAATGTGAATTACCCCA+AGG | + | chr4_1:54798345-54798364 | Msa0556540:CDS | 35.0% | |
| CTACTTCTGTATTCTAGGTA+TGG | + | chr4_1:54798575-54798594 | Msa0556540:intron | 35.0% | |
| TGCAAATTTCTCGACAAGAA+GGG | - | chr4_1:54798643-54798662 | None:intergenic | 35.0% | |
| TTGCAAATTTCTCGACAAGA+AGG | - | chr4_1:54798644-54798663 | None:intergenic | 35.0% | |
| AAAAATGGTTGGATGCATAC+TGG | + | chr4_1:54798683-54798702 | Msa0556540:CDS | 35.0% | |
| ! | CTTTGTCATGTGATTTGGAA+TGG | + | chr4_1:54798853-54798872 | Msa0556540:intron | 35.0% |
| CCTTACAAACACAGATGAAA+AGG | - | chr4_1:54798915-54798934 | None:intergenic | 35.0% | |
| ! | CCTTTTCATCTGTGTTTGTA+AGG | + | chr4_1:54798912-54798931 | Msa0556540:intron | 35.0% |
| TGTTTGTAAGGTGACGAAAT+TGG | + | chr4_1:54798924-54798943 | Msa0556540:intron | 35.0% | |
| GTTTGTAAGGTGACGAAATT+GGG | + | chr4_1:54798925-54798944 | Msa0556540:intron | 35.0% | |
| AGAGATCTCTGGTATTTCTT+TGG | - | chr4_1:54799034-54799053 | None:intergenic | 35.0% | |
| AGAACAGAAACATGCCTTAA+TGG | + | chr4_1:54799142-54799161 | Msa0556540:three_prime_UTR | 35.0% | |
| TGTAGATGTACAAGCCATTA+AGG | - | chr4_1:54799159-54799178 | None:intergenic | 35.0% | |
| TGGATATGAAGACAAGTTGT+TGG | + | chr4_1:54799201-54799220 | Msa0556540:three_prime_UTR | 35.0% | |
| TTTAGTTAAATGGCCTAAGC+TGG | - | chr4_1:54799254-54799273 | None:intergenic | 35.0% | |
| !! | AGCAGTTTTACAGAGCATTA+AGG | + | chr4_1:54799345-54799364 | Msa0556540:three_prime_UTR | 35.0% |
| !! | GCAGTTTTACAGAGCATTAA+GGG | + | chr4_1:54799346-54799365 | Msa0556540:three_prime_UTR | 35.0% |
| ! | GAAGAATCAGCTTCTGAAGA+TGG | + | chr4_1:54796267-54796286 | Msa0556540:CDS | 40.0% |
| !!! | AGTTTTCGCCGTTTTGGTTT+CGG | - | chr4_1:54796304-54796323 | None:intergenic | 40.0% |
| CATCGCATTACGAACAGATT+CGG | + | chr4_1:54796358-54796377 | Msa0556540:CDS | 40.0% | |
| ATCGCATTACGAACAGATTC+GGG | + | chr4_1:54796359-54796378 | Msa0556540:CDS | 40.0% | |
| AGAACGTCTTTCAGATTCGT+TGG | - | chr4_1:54796505-54796524 | None:intergenic | 40.0% | |
| CTGAAAGACGTTCTTCTTCT+AGG | + | chr4_1:54796511-54796530 | Msa0556540:CDS | 40.0% | |
| !! | ATTGCTTGTTGGTGTTGTGT+TGG | + | chr4_1:54796599-54796618 | Msa0556540:intron | 40.0% |
| GCCTGATGAAATCATGTGTT+TGG | + | chr4_1:54796764-54796783 | Msa0556540:intron | 40.0% | |
| CAAATCTGATGAAATCGTGC+GGG | + | chr4_1:54796919-54796938 | Msa0556540:intron | 40.0% | |
| TCGGTCTCACTAAATGTATG+AGG | - | chr4_1:54796947-54796966 | None:intergenic | 40.0% | |
| ! | TGTGAAGTGTCAGTACTATC+AGG | - | chr4_1:54797028-54797047 | None:intergenic | 40.0% |
| ATGATTGAATGTAGCCACGT+GGG | - | chr4_1:54797086-54797105 | None:intergenic | 40.0% | |
| AATGATTGAATGTAGCCACG+TGG | - | chr4_1:54797087-54797106 | None:intergenic | 40.0% | |
| CACAATAGTTAACTGGTGGT+AGG | - | chr4_1:54797396-54797415 | None:intergenic | 40.0% | |
| CGCTTGTCACAATAGTTAAC+TGG | - | chr4_1:54797403-54797422 | None:intergenic | 40.0% | |
| GCTCTTCAGTGTAAACTTCA+GGG | - | chr4_1:54797504-54797523 | None:intergenic | 40.0% | |
| TGCTCTTCAGTGTAAACTTC+AGG | - | chr4_1:54797505-54797524 | None:intergenic | 40.0% | |
| TAGGAGATTGTGAGACTGAT+TGG | + | chr4_1:54797536-54797555 | Msa0556540:CDS | 40.0% | |
| AGGAGATTGTGAGACTGATT+GGG | + | chr4_1:54797537-54797556 | Msa0556540:CDS | 40.0% | |
| GTAGATGGATATGATGAGGA+TGG | + | chr4_1:54797568-54797587 | Msa0556540:CDS | 40.0% | |
| AGATGGATATGATGAGGATG+GGG | + | chr4_1:54797570-54797589 | Msa0556540:CDS | 40.0% | |
| TGACATTTCTCTCCCTTGAT+TGG | - | chr4_1:54797610-54797629 | None:intergenic | 40.0% | |
| GGAGAGAAATGTCATCAATG+CGG | + | chr4_1:54797616-54797635 | Msa0556540:CDS | 40.0% | |
| GAGAGAAATGTCATCAATGC+GGG | + | chr4_1:54797617-54797636 | Msa0556540:CDS | 40.0% | |
| TGTCATCAATGCGGGTATTA+TGG | + | chr4_1:54797625-54797644 | Msa0556540:intron | 40.0% | |
| GGGTGATATAAGATGCAATG+GGG | + | chr4_1:54797866-54797885 | Msa0556540:intron | 40.0% | |
| GGTGATATAAGATGCAATGG+GGG | + | chr4_1:54797867-54797886 | Msa0556540:intron | 40.0% | |
| !!! | ATGGCTTGGTGGATTTTAAG+AGG | + | chr4_1:54797899-54797918 | Msa0556540:intron | 40.0% |
| !!! | TGGTGGATTTTAAGAGGAGA+TGG | + | chr4_1:54797905-54797924 | Msa0556540:intron | 40.0% |
| CGGGCATCCCATTAAAAAAT+TGG | - | chr4_1:54798047-54798066 | None:intergenic | 40.0% | |
| AAACCATATAAGCACACCAG+TGG | - | chr4_1:54798087-54798106 | None:intergenic | 40.0% | |
| AGAACCAATGTTGTCTATGG+TGG | - | chr4_1:54798127-54798146 | None:intergenic | 40.0% | |
| ! | TCTTTTAGGCGCTTAACTGT+TGG | + | chr4_1:54798306-54798325 | Msa0556540:intron | 40.0% |
| AATGTGAATTACCCCAAGGA+CGG | + | chr4_1:54798349-54798368 | Msa0556540:CDS | 40.0% | |
| TAGATGGAGTTAACTCATCG+AGG | - | chr4_1:54798492-54798511 | None:intergenic | 40.0% | |
| AATAGCTGCCGTAGGAAAAA+TGG | + | chr4_1:54798668-54798687 | Msa0556540:CDS | 40.0% | |
| !! | GCATCCAACCATTTTTCCTA+CGG | - | chr4_1:54798679-54798698 | None:intergenic | 40.0% |
| CAGTTCTATCTTCTTCAGTG+TGG | + | chr4_1:54798765-54798784 | Msa0556540:intron | 40.0% | |
| ! | GTCATGTGATTTGGAATGGA+AGG | + | chr4_1:54798857-54798876 | Msa0556540:intron | 40.0% |
| TGGAATGGAAGGCTAAGATA+TGG | + | chr4_1:54798868-54798887 | Msa0556540:intron | 40.0% | |
| !! | AGGGCTCTGAGAAGTTAAAT+AGG | + | chr4_1:54799102-54799121 | Msa0556540:exon | 40.0% |
| CTTGTACATCTACACGAAGA+TGG | + | chr4_1:54799165-54799184 | Msa0556540:three_prime_UTR | 40.0% | |
| TTTGGATTCAATGCCAGCTT+AGG | + | chr4_1:54799238-54799257 | Msa0556540:three_prime_UTR | 40.0% | |
| TTATCAAAACTCGGGGCATA+GGG | - | chr4_1:54799296-54799315 | None:intergenic | 40.0% | |
| ! | GAATCAGCTTCTGAAGATGG+CGG | + | chr4_1:54796270-54796289 | Msa0556540:CDS | 45.0% |
| ACCAAAACGGCGAAAACTGA+CGG | + | chr4_1:54796306-54796325 | Msa0556540:CDS | 45.0% | |
| ACGAACAGATTCGGGAACAA+AGG | + | chr4_1:54796367-54796386 | Msa0556540:CDS | 45.0% | |
| GCTGAGAGAATGCATAAGCT+TGG | + | chr4_1:54796402-54796421 | Msa0556540:CDS | 45.0% | |
| ! | AGGAGTTTTTCTTGACGGAG+GGG | - | chr4_1:54796473-54796492 | None:intergenic | 45.0% |
| ! | GAGGAGTTTTTCTTGACGGA+GGG | - | chr4_1:54796474-54796493 | None:intergenic | 45.0% |
| ! | AGATTCGTTGGATGGTAACG+AGG | - | chr4_1:54796493-54796512 | None:intergenic | 45.0% |
| CGTCTTTCAGATTCGTTGGA+TGG | - | chr4_1:54796501-54796520 | None:intergenic | 45.0% | |
| ATGTAGCCGACCACACTTAA+TGG | + | chr4_1:54797263-54797282 | Msa0556540:intron | 45.0% | |
| CTTTCTTGACGCTCTGCTTT+AGG | - | chr4_1:54797427-54797446 | None:intergenic | 45.0% | |
| ACCCTTCGATTCATAGGTGA+GGG | - | chr4_1:54797698-54797717 | None:intergenic | 45.0% | |
| AACCCTTCGATTCATAGGTG+AGG | - | chr4_1:54797699-54797718 | None:intergenic | 45.0% | |
| ! | CCAATGTTGTCTATGGTGGA+AGG | - | chr4_1:54798123-54798142 | None:intergenic | 45.0% |
| CCTTCCACCATAGACAACAT+TGG | + | chr4_1:54798120-54798139 | Msa0556540:intron | 45.0% | |
| GTTGAATCTGGAGAGATCTC+TGG | - | chr4_1:54799045-54799064 | None:intergenic | 45.0% | |
| ! | CTCCAGATTCAACACTGACT+AGG | + | chr4_1:54799052-54799071 | Msa0556540:CDS | 45.0% |
| ! | GTCCTAGTCAGTGTTGAATC+TGG | - | chr4_1:54799057-54799076 | None:intergenic | 45.0% |
| GTTATCAAAACTCGGGGCAT+AGG | - | chr4_1:54799297-54799316 | None:intergenic | 45.0% | |
| GAATGGGAACTCGTCGTAGA+AGG | + | chr4_1:54796232-54796251 | Msa0556540:exon | 50.0% | |
| !!! | TTTCGCCGTTTTGGTTTCGG+TGG | - | chr4_1:54796301-54796320 | None:intergenic | 50.0% |
| ! | ACCGTCAGTTTTCGCCGTTT+TGG | - | chr4_1:54796310-54796329 | None:intergenic | 50.0% |
| !! | GACGAAGGTGTTGTCGTTTC+AGG | + | chr4_1:54796330-54796349 | Msa0556540:CDS | 50.0% |
| !!! | GCGGTGTTGGTGTTTTCTTG+AGG | - | chr4_1:54796449-54796468 | None:intergenic | 50.0% |
| ! | CGAGGAGTTTTTCTTGACGG+AGG | - | chr4_1:54796475-54796494 | None:intergenic | 50.0% |
| TTGAATGTAGCCACGTGGGT+TGG | - | chr4_1:54797082-54797101 | None:intergenic | 50.0% | |
| ACTTCAGGGTTTGTGCCTTC+TGG | - | chr4_1:54797490-54797509 | None:intergenic | 50.0% | |
| ! | GAAGAGCATGAGAAGCTGCT+AGG | + | chr4_1:54797517-54797536 | Msa0556540:CDS | 50.0% |
| TGCCCTCACCTATGAATCGA+AGG | + | chr4_1:54797693-54797712 | Msa0556540:intron | 50.0% | |
| GCCCTCACCTATGAATCGAA+GGG | + | chr4_1:54797694-54797713 | Msa0556540:intron | 50.0% | |
| ! | GTAATGGGGGCATGACAGAA+TGG | + | chr4_1:54797991-54798010 | Msa0556540:intron | 50.0% |
| CCATATAAGCACACCAGTGG+TGG | - | chr4_1:54798084-54798103 | None:intergenic | 50.0% | |
| CCACCACTGGTGTGCTTATA+TGG | + | chr4_1:54798081-54798100 | Msa0556540:intron | 50.0% | |
| ATCTCCACAAAGCCGTCCTT+GGG | - | chr4_1:54798364-54798383 | None:intergenic | 50.0% | |
| AATCTCCACAAAGCCGTCCT+TGG | - | chr4_1:54798365-54798384 | None:intergenic | 50.0% | |
| GTGGAGATTGCCTCTACACA+AGG | + | chr4_1:54798376-54798395 | Msa0556540:CDS | 50.0% | |
| AAGCCAGCATCAATCCCAAG+TGG | + | chr4_1:54798612-54798631 | Msa0556540:CDS | 50.0% | |
| AGTCCACTTGGGATTGATGC+TGG | - | chr4_1:54798618-54798637 | None:intergenic | 50.0% | |
| CAAGAAGGGCAAGTCCACTT+GGG | - | chr4_1:54798629-54798648 | None:intergenic | 50.0% | |
| ACAAGAAGGGCAAGTCCACT+TGG | - | chr4_1:54798630-54798649 | None:intergenic | 50.0% | |
| GCTGCCGTAGGAAAAATGGT+TGG | + | chr4_1:54798672-54798691 | Msa0556540:CDS | 50.0% | |
| ! | GAGGAAAGCATGGAAGGATC+AGG | + | chr4_1:54798991-54799010 | Msa0556540:CDS | 50.0% |
| ! | CACTGACTAGGACACTGAGT+AGG | + | chr4_1:54799064-54799083 | Msa0556540:CDS | 50.0% |
| GGACACTGAGTAGGCCAATT+CGG | + | chr4_1:54799073-54799092 | Msa0556540:CDS | 50.0% | |
| TAGGCCAATTCGGACGAGAA+GGG | + | chr4_1:54799083-54799102 | Msa0556540:CDS | 50.0% | |
| CGCCACCACCGAAACCAAAA+CGG | + | chr4_1:54796293-54796312 | Msa0556540:CDS | 55.0% | |
| GCGAAAACTGACGGTGACGA+AGG | + | chr4_1:54796315-54796334 | Msa0556540:CDS | 55.0% | |
| ! | TTTTTCTTGACGGAGGGGCG+CGG | - | chr4_1:54796468-54796487 | None:intergenic | 55.0% |
| GACATTGACACCAACCCACG+TGG | + | chr4_1:54797069-54797088 | Msa0556540:intron | 55.0% | |
| ! | GCAATGGGGGCATGACAGAA+TGG | + | chr4_1:54797880-54797899 | Msa0556540:intron | 55.0% |
| ! | GGCATGACAGAATGGCTTGG+TGG | + | chr4_1:54797888-54797907 | Msa0556540:intron | 55.0% |
| ! | GGCATGACAGAATGGCTTGG+TGG | + | chr4_1:54797888-54797907 | Msa0556540:intron | 55.0% |
| TTACCCCAAGGACGGCTTTG+TGG | + | chr4_1:54798357-54798376 | Msa0556540:CDS | 55.0% | |
| TCTCCACAAAGCCGTCCTTG+GGG | - | chr4_1:54798363-54798382 | None:intergenic | 55.0% | |
| GCAACTGCAATAGCTGCCGT+AGG | + | chr4_1:54798660-54798679 | Msa0556540:CDS | 55.0% | |
| GATTAAGACCCGTCGCTCTG+AGG | + | chr4_1:54798972-54798991 | Msa0556540:CDS | 55.0% | |
| CATGCTTTCCTCAGAGCGAC+GGG | - | chr4_1:54798983-54799002 | None:intergenic | 55.0% | |
| CCATGCTTTCCTCAGAGCGA+CGG | - | chr4_1:54798984-54799003 | None:intergenic | 55.0% | |
| !! | CGCTCTGAGGAAAGCATGGA+AGG | + | chr4_1:54798985-54799004 | Msa0556540:CDS | 55.0% |
| GTAGGCCAATTCGGACGAGA+AGG | + | chr4_1:54799082-54799101 | Msa0556540:CDS | 55.0% | |
| AGAGCCCTTCTCGTCCGAAT+TGG | - | chr4_1:54799090-54799109 | None:intergenic | 55.0% | |
| !!! | CGCCGTTTTGGTTTCGGTGG+TGG | - | chr4_1:54796298-54796317 | None:intergenic | 60.0% |
| ! | GGGGGCATGACAGAATGGCT+TGG | + | chr4_1:54797885-54797904 | Msa0556540:intron | 60.0% |
| ! | GGGGGCATGACAGAATGGCT+TGG | + | chr4_1:54797885-54797904 | Msa0556540:intron | 60.0% |
| TAATGGGATGCCCGCCGTCA+TGG | + | chr4_1:54798053-54798072 | Msa0556540:intron | 60.0% | |
| !! | CCGTCGCTCTGAGGAAAGCA+TGG | + | chr4_1:54798981-54799000 | Msa0556540:CDS | 60.0% |
| !! | CAGTGGTGGTGCCGCCATGA+CGG | - | chr4_1:54798070-54798089 | None:intergenic | 65.0% |
| ! | TTGACGGAGGGGCGCGGTGT+TGG | - | chr4_1:54796462-54796481 | None:intergenic | 70.0% |
| TGGGATGCCCGCCGTCATGG+CGG | + | chr4_1:54798056-54798075 | Msa0556540:intron | 70.0% | |
| !! | TGGTGGTGCCGCCATGACGG+CGG | - | chr4_1:54798067-54798086 | None:intergenic | 70.0% |
| CGTCATGGCGGCACCACCAC+TGG | + | chr4_1:54798068-54798087 | Msa0556540:intron | 70.0% | |
| !! | GGTGGTGCCGCCATGACGGC+GGG | - | chr4_1:54798066-54798085 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 54796230 | 54799404 | 54796230 | ID=Msa0556540;Name=Msa0556540 |
| chr4_1 | mRNA | 54796230 | 54799404 | 54796230 | ID=Msa0556540-mRNA-1;Parent=Msa0556540;Name=Msa0556540-mRNA-1;_AED=0.01;_eAED=0.01;_QI=4|1|1|1|0.75|0.8|5|285|317 |
| chr4_1 | exon | 54796230 | 54796532 | 54796230 | ID=Msa0556540-mRNA-1:exon:16203;Parent=Msa0556540-mRNA-1 |
| chr4_1 | exon | 54797384 | 54797638 | 54797384 | ID=Msa0556540-mRNA-1:exon:16204;Parent=Msa0556540-mRNA-1 |
| chr4_1 | exon | 54798314 | 54798397 | 54798314 | ID=Msa0556540-mRNA-1:exon:16205;Parent=Msa0556540-mRNA-1 |
| chr4_1 | exon | 54798592 | 54798721 | 54798592 | ID=Msa0556540-mRNA-1:exon:16206;Parent=Msa0556540-mRNA-1 |
| chr4_1 | exon | 54798934 | 54799404 | 54798934 | ID=Msa0556540-mRNA-1:exon:16207;Parent=Msa0556540-mRNA-1 |
| chr4_1 | five_prime_UTR | 54796230 | 54796233 | 54796230 | ID=Msa0556540-mRNA-1:five_prime_utr;Parent=Msa0556540-mRNA-1 |
| chr4_1 | CDS | 54796234 | 54796532 | 54796234 | ID=Msa0556540-mRNA-1:cds;Parent=Msa0556540-mRNA-1 |
| chr4_1 | CDS | 54797384 | 54797638 | 54797384 | ID=Msa0556540-mRNA-1:cds;Parent=Msa0556540-mRNA-1 |
| chr4_1 | CDS | 54798314 | 54798397 | 54798314 | ID=Msa0556540-mRNA-1:cds;Parent=Msa0556540-mRNA-1 |
| chr4_1 | CDS | 54798592 | 54798721 | 54798592 | ID=Msa0556540-mRNA-1:cds;Parent=Msa0556540-mRNA-1 |
| chr4_1 | CDS | 54798934 | 54799119 | 54798934 | ID=Msa0556540-mRNA-1:cds;Parent=Msa0556540-mRNA-1 |
| chr4_1 | three_prime_UTR | 54799120 | 54799404 | 54799120 | ID=Msa0556540-mRNA-1:three_prime_utr;Parent=Msa0556540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
