Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389950 | XP_003611048.1 | 88.378 | 413 | 35 | 5 | 1 | 407 | 1 | 406 | 0.0 | 597 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389950 | sp|Q9SH58|MAKR2_ARATH | 41.387 | 447 | 162 | 20 | 1 | 388 | 1 | 406 | 3.81e-58 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389950 | G7KBZ0 | 88.378 | 413 | 35 | 5 | 1 | 407 | 1 | 406 | 0.0 | 597 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016040 | Msa0389950 | 0.830457 | 2.905149e-55 | -8.615850e-47 |
| Msa0019930 | Msa0389950 | 0.809720 | 1.646060e-50 | -8.615850e-47 |
| Msa0025580 | Msa0389950 | 0.818929 | 1.516493e-52 | -8.615850e-47 |
| Msa0027280 | Msa0389950 | 0.809501 | 1.833710e-50 | -8.615850e-47 |
| Msa0032180 | Msa0389950 | 0.805494 | 1.299372e-49 | -8.615850e-47 |
| Msa0032460 | Msa0389950 | 0.837829 | 4.124943e-57 | -8.615850e-47 |
| Msa0035140 | Msa0389950 | 0.873241 | 1.712635e-67 | -8.615850e-47 |
| Msa0035340 | Msa0389950 | 0.819692 | 1.016240e-52 | -8.615850e-47 |
| Msa0035380 | Msa0389950 | 0.821672 | 3.564358e-53 | -8.615850e-47 |
| Msa0036870 | Msa0389950 | 0.830497 | 2.840925e-55 | -8.615850e-47 |
| Msa0042610 | Msa0389950 | 0.805667 | 1.195271e-49 | -8.615850e-47 |
| Msa0050660 | Msa0389950 | 0.826872 | 2.137750e-54 | -8.615850e-47 |
| Msa0050700 | Msa0389950 | 0.824875 | 6.368394e-54 | -8.615850e-47 |
| Msa0050790 | Msa0389950 | 0.821728 | 3.460241e-53 | -8.615850e-47 |
| Msa0052260 | Msa0389950 | 0.823456 | 1.371906e-53 | -8.615850e-47 |
| Msa0053070 | Msa0389950 | 0.820111 | 8.151747e-53 | -8.615850e-47 |
| Msa0054690 | Msa0389950 | 0.802633 | 5.113515e-49 | -8.615850e-47 |
| Msa0067060 | Msa0389950 | 0.824728 | 6.896723e-54 | -8.615850e-47 |
| Msa0068150 | Msa0389950 | 0.845568 | 3.744916e-59 | -8.615850e-47 |
| Msa0077560 | Msa0389950 | 0.803928 | 2.758114e-49 | -8.615850e-47 |
| Msa0081980 | Msa0389950 | 0.832854 | 7.451492e-56 | -8.615850e-47 |
| Msa0090400 | Msa0389950 | 0.811058 | 8.465227e-51 | -8.615850e-47 |
| Msa0091360 | Msa0389950 | 0.816778 | 4.641006e-52 | -8.615850e-47 |
| Msa0098410 | Msa0389950 | 0.814244 | 1.700802e-51 | -8.615850e-47 |
| Msa0112670 | Msa0389950 | 0.824472 | 7.924300e-54 | -8.615850e-47 |
| Msa0115550 | Msa0389950 | 0.836133 | 1.118871e-56 | -8.615850e-47 |
| Msa0121330 | Msa0389950 | 0.829370 | 5.348453e-55 | -8.615850e-47 |
| Msa0128460 | Msa0389950 | 0.816193 | 6.274622e-52 | -8.615850e-47 |
| Msa0140280 | Msa0389950 | 0.847681 | 9.916792e-60 | -8.615850e-47 |
| Msa0141640 | Msa0389950 | 0.809703 | 1.659579e-50 | -8.615850e-47 |
| Msa0159590 | Msa0389950 | 0.804848 | 1.773817e-49 | -8.615850e-47 |
| Msa0161930 | Msa0389950 | 0.800918 | 1.150466e-48 | -8.615850e-47 |
| Msa0174290 | Msa0389950 | 0.832002 | 1.211817e-55 | -8.615850e-47 |
| Msa0188610 | Msa0389950 | 0.806488 | 8.030158e-50 | -8.615850e-47 |
| Msa0190570 | Msa0389950 | 0.820589 | 6.334418e-53 | -8.615850e-47 |
| Msa0200050 | Msa0389950 | 0.814960 | 1.180658e-51 | -8.615850e-47 |
| Msa0209980 | Msa0389950 | 0.821708 | 3.497721e-53 | -8.615850e-47 |
| Msa0213030 | Msa0389950 | 0.816800 | 4.587099e-52 | -8.615850e-47 |
| Msa0230800 | Msa0389950 | 0.824381 | 8.325003e-54 | -8.615850e-47 |
| Msa0230870 | Msa0389950 | 0.805288 | 1.434827e-49 | -8.615850e-47 |
| Msa0232760 | Msa0389950 | 0.827204 | 1.780436e-54 | -8.615850e-47 |
| Msa0367150 | Msa0389950 | 0.809047 | 2.295164e-50 | -8.615850e-47 |
| Msa0367520 | Msa0389950 | 0.810655 | 1.034901e-50 | -8.615850e-47 |
| Msa0367690 | Msa0389950 | 0.808798 | 2.594995e-50 | -8.615850e-47 |
| Msa0380670 | Msa0389950 | 0.855183 | 7.484146e-62 | -8.615850e-47 |
| Msa0380710 | Msa0389950 | 0.817733 | 2.828767e-52 | -8.615850e-47 |
| Msa0382770 | Msa0389950 | 0.811870 | 5.639090e-51 | -8.615850e-47 |
| Msa0389950 | Msa0400950 | 0.807757 | 4.324420e-50 | -8.615850e-47 |
| Msa0389950 | Msa0419540 | 0.801197 | 1.008528e-48 | -8.615850e-47 |
| Msa0389950 | Msa0422050 | 0.822293 | 2.559789e-53 | -8.615850e-47 |
| Msa0389950 | Msa0430300 | 0.856234 | 3.691672e-62 | -8.615850e-47 |
| Msa0389950 | Msa0430480 | 0.821156 | 4.688885e-53 | -8.615850e-47 |
| Msa0389950 | Msa0436910 | 0.807995 | 3.849933e-50 | -8.615850e-47 |
| Msa0389950 | Msa0443410 | 0.804003 | 2.661038e-49 | -8.615850e-47 |
| Msa0389950 | Msa0447750 | 0.845710 | 3.426900e-59 | -8.615850e-47 |
| Msa0389950 | Msa0476280 | 0.806831 | 6.796517e-50 | -8.615850e-47 |
| Msa0389950 | Msa0481140 | 0.801487 | 8.797899e-49 | -8.615850e-47 |
| Msa0389950 | Msa0481890 | 0.809576 | 1.767017e-50 | -8.615850e-47 |
| Msa0389950 | Msa0483910 | 0.823954 | 1.048430e-53 | -8.615850e-47 |
| Msa0389950 | Msa0495550 | 0.834492 | 2.904298e-56 | -8.615850e-47 |
| Msa0389950 | Msa0520260 | 0.802582 | 5.238982e-49 | -8.615850e-47 |
| Msa0389950 | Msa0520870 | 0.809869 | 1.528633e-50 | -8.615850e-47 |
| Msa0389950 | Msa0530780 | 0.809122 | 2.211243e-50 | -8.615850e-47 |
| Msa0389950 | Msa0531960 | 0.830481 | 2.867242e-55 | -8.615850e-47 |
| Msa0389950 | Msa0537990 | 0.810408 | 1.169801e-50 | -8.615850e-47 |
| Msa0389950 | Msa0556540 | 0.825582 | 4.332912e-54 | -8.615850e-47 |
| Msa0389950 | Msa0563740 | 0.823518 | 1.326565e-53 | -8.615850e-47 |
| Msa0389950 | Msa0563940 | 0.813987 | 1.937393e-51 | -8.615850e-47 |
| Msa0389950 | Msa0567170 | 0.826575 | 2.516845e-54 | -8.615850e-47 |
| Msa0389950 | Msa0571620 | 0.835129 | 2.007926e-56 | -8.615850e-47 |
| Msa0389950 | Msa0577280 | 0.818210 | 2.207951e-52 | -8.615850e-47 |
| Msa0389950 | Msa0577330 | 0.821352 | 4.225958e-53 | -8.615850e-47 |
| Msa0389950 | Msa0580200 | 0.821588 | 3.727824e-53 | -8.615850e-47 |
| Msa0389950 | Msa0580370 | 0.824874 | 6.372974e-54 | -8.615850e-47 |
| Msa0389950 | Msa0585340 | 0.826277 | 2.963140e-54 | -8.615850e-47 |
| Msa0389950 | Msa0590200 | 0.807229 | 5.597807e-50 | -8.615850e-47 |
| Msa0389950 | Msa0603980 | 0.804964 | 1.677287e-49 | -8.615850e-47 |
| Msa0389950 | Msa0606100 | 0.841458 | 4.693281e-58 | -8.615850e-47 |
| Msa0389950 | Msa0611920 | 0.817046 | 4.040663e-52 | -8.615850e-47 |
| Msa0389950 | Msa0621710 | 0.840769 | 7.123512e-58 | -8.615850e-47 |
| Msa0389950 | Msa0622920 | 0.815517 | 8.876424e-52 | -8.615850e-47 |
| Msa0389950 | Msa0647050 | 0.816974 | 4.193510e-52 | -8.615850e-47 |
| Msa0389950 | Msa0652070 | 0.829925 | 3.917499e-55 | -8.615850e-47 |
| Msa0389950 | Msa0657700 | 0.807955 | 3.925688e-50 | -8.615850e-47 |
| Msa0389950 | Msa0658640 | 0.826593 | 2.490955e-54 | -8.615850e-47 |
| Msa0389950 | Msa0658880 | 0.804451 | 2.146264e-49 | -8.615850e-47 |
| Msa0389950 | Msa0661150 | 0.807487 | 4.935625e-50 | -8.615850e-47 |
| Msa0389950 | Msa0666700 | 0.837749 | 4.326658e-57 | -8.615850e-47 |
| Msa0389950 | Msa0668900 | 0.822376 | 2.449210e-53 | -8.615850e-47 |
| Msa0389950 | Msa0670100 | 0.807948 | 3.938510e-50 | -8.615850e-47 |
| Msa0389950 | Msa0688910 | 0.803050 | 4.195043e-49 | -8.615850e-47 |
| Msa0389950 | Msa0694630 | 0.813696 | 2.246497e-51 | -8.615850e-47 |
| Msa0389950 | Msa0698730 | 0.840046 | 1.100582e-57 | -8.615850e-47 |
| Msa0389950 | Msa0700460 | 0.821575 | 3.753512e-53 | -8.615850e-47 |
| Msa0389950 | Msa0702810 | 0.804787 | 1.826710e-49 | -8.615850e-47 |
| Msa0389950 | Msa0703600 | 0.813529 | 2.444829e-51 | -8.615850e-47 |
| Msa0389950 | Msa0704410 | 0.816850 | 4.471141e-52 | -8.615850e-47 |
| Msa0389950 | Msa0709200 | 0.815227 | 1.029901e-51 | -8.615850e-47 |
| Msa0389950 | Msa0709440 | 0.810419 | 1.163699e-50 | -8.615850e-47 |
| Msa0389950 | Msa0709630 | 0.806430 | 8.257043e-50 | -8.615850e-47 |
| Msa0389950 | Msa0735780 | 0.827179 | 1.804699e-54 | -8.615850e-47 |
| Msa0389950 | Msa0737990 | 0.804522 | 2.075004e-49 | -8.615850e-47 |
| Msa0389950 | Msa0743440 | 0.806052 | 9.919144e-50 | -8.615850e-47 |
| Msa0389950 | Msa0747740 | 0.834207 | 3.425745e-56 | -8.615850e-47 |
| Msa0389950 | Msa0756490 | 0.810074 | 1.381119e-50 | -8.615850e-47 |
| Msa0389950 | Msa0757100 | 0.823680 | 1.216052e-53 | -8.615850e-47 |
| Msa0389950 | Msa0758650 | 0.807201 | 5.674369e-50 | -8.615850e-47 |
| Msa0389950 | Msa0761670 | 0.836117 | 1.129021e-56 | -8.615850e-47 |
| Msa0389950 | Msa0773630 | 0.821403 | 4.114429e-53 | -8.615850e-47 |
| Msa0389950 | Msa0773670 | 0.805486 | 1.304097e-49 | -8.615850e-47 |
| Msa0389950 | Msa0777750 | 0.820668 | 6.073923e-53 | -8.615850e-47 |
| Msa0389950 | Msa0792370 | 0.805510 | 1.289441e-49 | -8.615850e-47 |
| Msa0389950 | Msa0795870 | 0.827083 | 1.902328e-54 | -8.615850e-47 |
| Msa0389950 | Msa0800660 | 0.803877 | 2.826646e-49 | -8.615850e-47 |
| Msa0389950 | Msa0811020 | 0.804308 | 2.299264e-49 | -8.615850e-47 |
| Msa0389950 | Msa0818880 | 0.812533 | 4.041470e-51 | -8.615850e-47 |
| Msa0389950 | Msa0824450 | 0.809350 | 1.976172e-50 | -8.615850e-47 |
| Msa0389950 | Msa0828190 | 0.801852 | 7.406368e-49 | -8.615850e-47 |
| Msa0389950 | Msa0828970 | 0.808604 | 2.853861e-50 | -8.615850e-47 |
| Msa0389950 | Msa0833650 | 0.824204 | 9.162619e-54 | -8.615850e-47 |
| Msa0389950 | Msa0835490 | 0.804112 | 2.525240e-49 | -8.615850e-47 |
| Msa0389950 | Msa0863620 | 0.828234 | 1.006915e-54 | -8.615850e-47 |
| Msa0389950 | Msa0888790 | 0.800656 | 1.300857e-48 | -8.615850e-47 |
| Msa0389950 | Msa0900760 | 0.806089 | 9.741812e-50 | -8.615850e-47 |
| Msa0389950 | Msa0909760 | 0.815918 | 7.227780e-52 | -8.615850e-47 |
| Msa0389950 | Msa0915520 | 0.813821 | 2.108458e-51 | -8.615850e-47 |
| Msa0389950 | Msa0931590 | 0.837322 | 5.564877e-57 | -8.615850e-47 |
| Msa0389950 | Msa0966320 | 0.818642 | 1.762547e-52 | -8.615850e-47 |
| Msa0389950 | Msa0966710 | 0.801056 | 1.078156e-48 | -8.615850e-47 |
| Msa0389950 | Msa1003740 | 0.800965 | 1.125052e-48 | -8.615850e-47 |
| Msa0389950 | Msa1003800 | 0.821548 | 3.807282e-53 | -8.615850e-47 |
| Msa0389950 | Msa1003930 | 0.809359 | 1.967017e-50 | -8.615850e-47 |
| Msa0389950 | Msa1033920 | 0.813716 | 2.223026e-51 | -8.615850e-47 |
| Msa0389950 | Msa1037540 | 0.823794 | 1.143284e-53 | -8.615850e-47 |
| Msa0389950 | Msa1042160 | 0.810765 | 9.794275e-51 | -8.615850e-47 |
| Msa0389950 | Msa1042190 | 0.814793 | 1.285597e-51 | -8.615850e-47 |
| Msa0389950 | Msa1042880 | 0.812990 | 3.209909e-51 | -8.615850e-47 |
| Msa0389950 | Msa1078880 | 0.825849 | 3.744491e-54 | -8.615850e-47 |
| Msa0389950 | Msa1078970 | 0.838307 | 3.108359e-57 | -8.615850e-47 |
| Msa0389950 | Msa1082200 | 0.818855 | 1.576023e-52 | -8.615850e-47 |
| Msa0389950 | Msa1084530 | 0.818750 | 1.665493e-52 | -8.615850e-47 |
| Msa0389950 | Msa1090140 | 0.825341 | 4.941901e-54 | -8.615850e-47 |
| Msa0389950 | Msa1114630 | 0.801049 | 1.081368e-48 | -8.615850e-47 |
| Msa0389950 | Msa1116190 | 0.807586 | 4.702547e-50 | -8.615850e-47 |
| Msa0389950 | Msa1116220 | 0.808356 | 3.224914e-50 | -8.615850e-47 |
| Msa0389950 | Msa1116660 | 0.856281 | 3.577950e-62 | -8.615850e-47 |
| Msa0389950 | Msa1116740 | 0.826088 | 3.286959e-54 | -8.615850e-47 |
| Msa0389950 | Msa1125820 | 0.821145 | 4.718418e-53 | -8.615850e-47 |
| Msa0389950 | Msa1125990 | 0.819307 | 1.243742e-52 | -8.615850e-47 |
| Msa0389950 | Msa1130420 | 0.805832 | 1.103319e-49 | -8.615850e-47 |
| Msa0389950 | Msa1132530 | 0.817042 | 4.048397e-52 | -8.615850e-47 |
| Msa0389950 | Msa1132840 | 0.824291 | 8.738762e-54 | -8.615850e-47 |
| Msa0389950 | Msa1139050 | 0.831685 | 1.451163e-55 | -8.615850e-47 |
| Msa0389950 | Msa1162590 | 0.807003 | 6.250408e-50 | -8.615850e-47 |
| Msa0389950 | Msa1162880 | 0.827673 | 1.374184e-54 | -8.615850e-47 |
| Msa0389950 | Msa1167470 | 0.802182 | 6.334968e-49 | -8.615850e-47 |
| Msa0389950 | Msa1169190 | 0.820758 | 5.791850e-53 | -8.615850e-47 |
| Msa0389950 | Msa1171290 | 0.807218 | 5.627322e-50 | -8.615850e-47 |
| Msa0389950 | Msa1191520 | 0.824901 | 6.279675e-54 | -8.615850e-47 |
| Msa0389950 | Msa1203300 | 0.803151 | 3.997106e-49 | -8.615850e-47 |
| Msa0389950 | Msa1208950 | 0.805910 | 1.062633e-49 | -8.615850e-47 |
| Msa0389950 | Msa1214350 | 0.830191 | 3.374679e-55 | -8.615850e-47 |
| Msa0389950 | Msa1217910 | 0.809733 | 1.635395e-50 | -8.615850e-47 |
| Msa0389950 | Msa1220170 | 0.805821 | 1.109445e-49 | -8.615850e-47 |
| Msa0389950 | Msa1226520 | 0.828631 | 8.073979e-55 | -8.615850e-47 |
| Msa0389950 | Msa1228870 | 0.825500 | 4.532297e-54 | -8.615850e-47 |
| Msa0389950 | Msa1234140 | 0.835283 | 1.836146e-56 | -8.615850e-47 |
| Msa0389950 | Msa1240770 | 0.817969 | 2.502991e-52 | -8.615850e-47 |
| Msa0389950 | Msa1244240 | 0.828696 | 7.789239e-55 | -8.615850e-47 |
| Msa0389950 | Msa1254540 | 0.811533 | 6.676907e-51 | -8.615850e-47 |
| Msa0389950 | Msa1261050 | 0.830825 | 2.360635e-55 | -8.615850e-47 |
| Msa0389950 | Msa1263780 | 0.805977 | 1.028677e-49 | -8.615850e-47 |
| Msa0389950 | Msa1300460 | 0.822470 | 2.328862e-53 | -8.615850e-47 |
| Msa0389950 | Msa1303650 | 0.804256 | 2.357196e-49 | -8.615850e-47 |
| Msa0389950 | Msa1321340 | 0.812201 | 4.776775e-51 | -8.615850e-47 |
| Msa0389950 | Msa1328300 | 0.801276 | 9.720437e-49 | -8.615850e-47 |
| Msa0389950 | Msa1338210 | 0.807435 | 5.063216e-50 | -8.615850e-47 |
| Msa0389950 | Msa1339170 | 0.805713 | 1.168853e-49 | -8.615850e-47 |
| Msa0389950 | Msa1343170 | 0.824350 | 8.466614e-54 | -8.615850e-47 |
| Msa0389950 | Msa1343180 | 0.833800 | 4.331788e-56 | -8.615850e-47 |
| Msa0389950 | Msa1364040 | 0.810731 | 9.963956e-51 | -8.615850e-47 |
| Msa0389950 | Msa1372040 | 0.833374 | 5.533934e-56 | -8.615850e-47 |
| Msa0389950 | Msa1381180 | 0.810901 | 9.152632e-51 | -8.615850e-47 |
| Msa0389950 | Msa1393280 | 0.848107 | 7.564681e-60 | -8.615850e-47 |
| Msa0389950 | Msa1409410 | 0.804772 | 1.840305e-49 | -8.615850e-47 |
| Msa0389950 | Msa1426110 | 0.824936 | 6.161648e-54 | -8.615850e-47 |
| Msa0389950 | Msa1437930 | 0.800783 | 1.225542e-48 | -8.615850e-47 |
| Msa0389950 | Msa1440630 | 0.820766 | 5.767910e-53 | -8.615850e-47 |
| Msa0389950 | Msa1446100 | 0.831753 | 1.395740e-55 | -8.615850e-47 |
| Msa0389950 | Msa1447170 | 0.848280 | 6.779835e-60 | -8.615850e-47 |
| Msa0389950 | Msa1453280 | 0.804733 | 1.874308e-49 | -8.615850e-47 |
| Msa0389950 | Msa1454140 | 0.807696 | 4.456359e-50 | -8.615850e-47 |
| Msa0242590 | Msa0389950 | 0.800487 | 1.408519e-48 | -8.615850e-47 |
| Msa0270340 | Msa0389950 | 0.804814 | 1.803499e-49 | -8.615850e-47 |
| Msa0298470 | Msa0389950 | 0.819434 | 1.163798e-52 | -8.615850e-47 |
| Msa0353950 | Msa0389950 | 0.801376 | 9.271148e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389950 | MtrunA17_Chr5g0397131 | 88.378 | 413 | 35 | 5 | 1 | 407 | 1 | 406 | 0.0 | 597 |
| Msa0389950 | MtrunA17_Chr8g0387621 | 40.931 | 408 | 127 | 16 | 1 | 366 | 1 | 336 | 8.19e-55 | 185 |
| Msa0389950 | MtrunA17_Chr1g0202421 | 33.075 | 387 | 145 | 18 | 1 | 371 | 1 | 289 | 1.35e-38 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0389950 | AT1G64080.1 | 41.387 | 447 | 162 | 20 | 1 | 388 | 1 | 406 | 3.87e-59 | 198 |
| Msa0389950 | AT5G52870.1 | 29.596 | 223 | 105 | 6 | 153 | 371 | 93 | 267 | 7.79e-19 | 87.0 |
| Msa0389950 | AT5G52870.2 | 29.596 | 223 | 105 | 6 | 153 | 371 | 93 | 267 | 1.00e-18 | 86.3 |
Find 95 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGTTCAACTTTCTGATTC+TGG | 0.092598 | 3_2:+501399 | None:intergenic |
| CTTGATTTCCTTGACAATTC+TGG | 0.186052 | 3_2:+500642 | None:intergenic |
| TCAAGTGACAAGAGACTTTC+AGG | 0.210690 | 3_2:-500624 | Msa0389950:CDS |
| AGAGTTGTTTACAAACATTT+AGG | 0.218894 | 3_2:-501131 | Msa0389950:CDS |
| TATGCACAAGTATTTGAAAA+TGG | 0.291835 | 3_2:-501327 | Msa0389950:CDS |
| CTTGTTGTTGTTGTTTGTTA+TGG | 0.301851 | 3_2:+501852 | None:intergenic |
| TTCTCTTTACTATACTATAC+TGG | 0.349389 | 3_2:-502116 | Msa0389950:five_prime_UTR |
| CAAGAGTCAGAGTCAGAAAC+AGG | 0.350794 | 3_2:-501177 | Msa0389950:CDS |
| AGCTAAAAGCTTCCATTGTT+GGG | 0.369587 | 3_2:+502089 | None:intergenic |
| GTGAATTGAGGTTTGTTGTT+TGG | 0.372570 | 3_2:+501617 | None:intergenic |
| GAGTTGTTTACAAACATTTA+GGG | 0.374177 | 3_2:-501130 | Msa0389950:CDS |
| TGGTGAAACCTCTTTACATA+AGG | 0.375753 | 3_2:-501307 | Msa0389950:CDS |
| AAGCTAAAAGCTTCCATTGT+TGG | 0.386486 | 3_2:+502088 | None:intergenic |
| ACTTTGAATTTGATTCTCTC+TGG | 0.392176 | 3_2:+501497 | None:intergenic |
| TTCACCTCTGGATGCATTGA+AGG | 0.393929 | 3_2:+500980 | None:intergenic |
| TGAACCATCATTATCACCTT+TGG | 0.395194 | 3_2:-501378 | Msa0389950:CDS |
| AAGTTTCGTGTCTTCATGTC+TGG | 0.399226 | 3_2:-501569 | Msa0389950:CDS |
| TCACTTCTTTCATTGTTTGA+AGG | 0.403278 | 3_2:+501746 | None:intergenic |
| GGTGAAACCTCTTTACATAA+GGG | 0.408319 | 3_2:-501306 | Msa0389950:CDS |
| GGTATTGACGGTGGTGGAAG+TGG | 0.417256 | 3_2:+502003 | None:intergenic |
| TCTGGTTTGTTTGAGATTTG+TGG | 0.420698 | 3_2:+501417 | None:intergenic |
| CGAGGTGGTGGTGCTGTAGT+TGG | 0.425514 | 3_2:-502052 | Msa0389950:CDS |
| GAAGAGCCGTTCCGCGTCTT+CGG | 0.426597 | 3_2:-501108 | Msa0389950:CDS |
| GAAACAGGGGAATAATATTC+CGG | 0.441776 | 3_2:-501162 | Msa0389950:CDS |
| CAGCAGCAAGATGGAATTCA+AGG | 0.444566 | 3_2:-501026 | Msa0389950:CDS |
| GACGGTGGTGGAAGTGGTGG+TGG | 0.444569 | 3_2:+502009 | None:intergenic |
| CTGTTTCTGACTCTGACTCT+TGG | 0.446943 | 3_2:+501178 | None:intergenic |
| CGAGAAACCCTTATGTAAAG+AGG | 0.451055 | 3_2:+501299 | None:intergenic |
| AGTAGAACTGTTAGAGATGA+AGG | 0.452412 | 3_2:-500468 | Msa0389950:three_prime_UTR |
| GAAAATACAGTGAATATGTT+GGG | 0.454276 | 3_2:+502139 | None:intergenic |
| TTGTTGTTGTTTGTTATGGT+TGG | 0.455584 | 3_2:+501856 | None:intergenic |
| TTGTCGAGAATGAAGGAAGA+AGG | 0.462443 | 3_2:+501659 | None:intergenic |
| GAGACTTTCAGGTTGAAGAA+AGG | 0.466659 | 3_2:-500613 | Msa0389950:exon |
| GAGAATGGTGGTGGTATTGA+CGG | 0.469232 | 3_2:+501991 | None:intergenic |
| AACAATGAAGCAGTGAATTG+AGG | 0.470671 | 3_2:+501605 | None:intergenic |
| TCTTCCAAAGGTGATAATGA+TGG | 0.471973 | 3_2:+501374 | None:intergenic |
| GTGGTGGTGGAGTCAGAAGA+AGG | 0.474925 | 3_2:+502022 | None:intergenic |
| CCGTTCCGCGTCTTCGGCAG+TGG | 0.475358 | 3_2:-501102 | Msa0389950:CDS |
| GGCAGTGGCGGCTTCTCCGC+CGG | 0.476606 | 3_2:-501087 | Msa0389950:CDS |
| CTTAAATACTGGCGAGGTGG+TGG | 0.477962 | 3_2:-502064 | Msa0389950:CDS |
| TCAGAGGATTTATTCTTCAA+AGG | 0.479259 | 3_2:-501701 | Msa0389950:CDS |
| AGAAAATACAGTGAATATGT+TGG | 0.488295 | 3_2:+502138 | None:intergenic |
| TAAATCAAGCCCGGGTGAAA+AGG | 0.488748 | 3_2:-501258 | Msa0389950:CDS |
| TCTTTCACTGTCACCTTCAG+AGG | 0.498693 | 3_2:-501717 | Msa0389950:CDS |
| GCTTTCAGCGGTGGTGAGAA+TGG | 0.502612 | 3_2:+501976 | None:intergenic |
| GTGGTGAAGTGAGAAGAAAA+AGG | 0.506170 | 3_2:+502164 | None:intergenic |
| CCATGGTGATAAATCAAGCC+CGG | 0.510297 | 3_2:-501267 | Msa0389950:CDS |
| GTAAACTCTAAGTCAAAGAA+AGG | 0.510667 | 3_2:+501929 | None:intergenic |
| CAGGGGAATAATATTCCGGC+AGG | 0.511050 | 3_2:-501158 | Msa0389950:CDS |
| TCTGGTGAAATTTCTCGCAA+TGG | 0.521575 | 3_2:+500660 | None:intergenic |
| AGACATGAAGACACGAAACT+TGG | 0.531689 | 3_2:+501571 | None:intergenic |
| ATTGACGGTGGTGGAAGTGG+TGG | 0.536058 | 3_2:+502006 | None:intergenic |
| AGCCGCCACTGCCGAAGACG+CGG | 0.542768 | 3_2:+501097 | None:intergenic |
| TAAACAACTCTTAGCCCTGC+CGG | 0.558745 | 3_2:+501143 | None:intergenic |
| GTCGTCGCTGCTTTCAGCGG+TGG | 0.560517 | 3_2:+501967 | None:intergenic |
| GTTGTTGTTGTCGAGAATGA+AGG | 0.560905 | 3_2:+501652 | None:intergenic |
| TTCCGCGTCTTCGGCAGTGG+CGG | 0.563880 | 3_2:-501099 | Msa0389950:CDS |
| CCACTGCCGAAGACGCGGAA+CGG | 0.563993 | 3_2:+501102 | None:intergenic |
| AATGCAATAGTGAGTGAAGA+GGG | 0.564305 | 3_2:+502231 | None:intergenic |
| GGTGGTGGTATTGACGGTGG+TGG | 0.568497 | 3_2:+501997 | None:intergenic |
| TCAAAGGAGACAGTAATGGA+TGG | 0.572026 | 3_2:-500507 | Msa0389950:three_prime_UTR |
| TAGTGGAGAGAAATAGTCAA+AGG | 0.582251 | 3_2:-500523 | Msa0389950:three_prime_UTR |
| TTGAAGAATAAATCCTCTGA+AGG | 0.584940 | 3_2:+501704 | None:intergenic |
| GATAGTGAAGATGATGATGA+TGG | 0.588770 | 3_2:-501806 | Msa0389950:CDS |
| AAATTTCACCAGAATTGTCA+AGG | 0.590930 | 3_2:-500650 | Msa0389950:CDS |
| ATAGTCAAAGGAGACAGTAA+TGG | 0.591385 | 3_2:-500511 | Msa0389950:three_prime_UTR |
| CAAAGGAGACAGTAATGGAT+GGG | 0.594744 | 3_2:-500506 | Msa0389950:three_prime_UTR |
| TTTACATAAGGGTTTCTCGT+AGG | 0.595831 | 3_2:-501295 | Msa0389950:CDS |
| TTCTCGCAATGGATCACTCA+CGG | 0.599434 | 3_2:+500671 | None:intergenic |
| AAGAGTCAGAGTCAGAAACA+GGG | 0.601317 | 3_2:-501176 | Msa0389950:CDS |
| CATGGTGATAAATCAAGCCC+GGG | 0.603985 | 3_2:-501266 | Msa0389950:CDS |
| CTGGTGAAAAGTGAAACAAT+GGG | 0.611998 | 3_2:+501464 | None:intergenic |
| TATACTGGCTCTCCCAACAA+TGG | 0.616878 | 3_2:-502101 | Msa0389950:exon |
| AGCGACGACAATGATGATGA+AGG | 0.617421 | 3_2:-501953 | Msa0389950:CDS |
| TCTGGTGAAAAGTGAAACAA+TGG | 0.618237 | 3_2:+501463 | None:intergenic |
| AGCGGTGGTGAGAATGGTGG+TGG | 0.618375 | 3_2:+501982 | None:intergenic |
| AATGGTGGTGGTATTGACGG+TGG | 0.624051 | 3_2:+501994 | None:intergenic |
| AATGGATCACTCACGGAACG+TGG | 0.625627 | 3_2:+500678 | None:intergenic |
| ATTGTCGTCGCTGCTTTCAG+CGG | 0.629569 | 3_2:+501964 | None:intergenic |
| AGAGTCAGAGTCAGAAACAG+GGG | 0.634295 | 3_2:-501175 | Msa0389950:CDS |
| GCTGCAAAAGCGAATCATCA+CGG | 0.637302 | 3_2:+501045 | None:intergenic |
| CGTTTCGACGACACTAACAC+CGG | 0.649892 | 3_2:+501068 | None:intergenic |
| GAAGCAGAAATAGCGACGGA+AGG | 0.656677 | 3_2:-501233 | Msa0389950:CDS |
| AGTGAAGATGATGATGATGG+TGG | 0.659705 | 3_2:-501803 | Msa0389950:CDS |
| CCGGGCTTGATTTATCACCA+TGG | 0.662133 | 3_2:+501267 | None:intergenic |
| GTTTCTCGTAGGTACAGCCA+TGG | 0.666123 | 3_2:-501284 | Msa0389950:CDS |
| ACAGTGAATATGTTGGGCAG+TGG | 0.667153 | 3_2:+502145 | None:intergenic |
| AGCTTGCTTAAATACTGGCG+AGG | 0.670456 | 3_2:-502070 | Msa0389950:CDS |
| AGATCCTTCAATGCATCCAG+AGG | 0.680000 | 3_2:-500984 | Msa0389950:intron |
| TTGCTTAAATACTGGCGAGG+TGG | 0.681386 | 3_2:-502067 | Msa0389950:CDS |
| GGTTGAAGCAGAAATAGCGA+CGG | 0.682979 | 3_2:-501237 | Msa0389950:CDS |
| GAATGCAATAGTGAGTGAAG+AGG | 0.692653 | 3_2:+502230 | None:intergenic |
| AGGGGAATAATATTCCGGCA+GGG | 0.693221 | 3_2:-501157 | Msa0389950:CDS |
| TTCGACGACACTAACACCGG+CGG | 0.696268 | 3_2:+501071 | None:intergenic |
| TTCAGCGGTGGTGAGAATGG+TGG | 0.706931 | 3_2:+501979 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTATTTTTAATTAATTT+TGG | - | chr3_2:501867-501886 | Msa0389950:CDS | 0.0% |
| !!! | TTATTATTTTTAATTAATTT+TGG | - | chr3_2:501867-501886 | Msa0389950:CDS | 0.0% |
| !!! | AGTATGAATGAATATTTTTT+TGG | + | chr3_2:500440-500459 | None:intergenic | 15.0% |
| !! | TAAAAAATGGAATAATTTAG+AGG | + | chr3_2:501710-501729 | None:intergenic | 15.0% |
| !! | TTTAAAGACTACATAAAAAA+TGG | + | chr3_2:501723-501742 | None:intergenic | 15.0% |
| !!! | TTGATGATATTATATAGTTT+AGG | - | chr3_2:501798-501817 | Msa0389950:CDS | 15.0% |
| !!! | TTAATTAATTTTGGTGTAAA+TGG | - | chr3_2:501876-501895 | Msa0389950:CDS | 15.0% |
| !!! | AGTATGAATGAATATTTTTT+TGG | + | chr3_2:500440-500459 | None:intergenic | 15.0% |
| !! | TAAAAAATGGAATAATTTAG+AGG | + | chr3_2:501710-501729 | None:intergenic | 15.0% |
| !! | TTTAAAGACTACATAAAAAA+TGG | + | chr3_2:501723-501742 | None:intergenic | 15.0% |
| !!! | TTGATGATATTATATAGTTT+AGG | - | chr3_2:501798-501817 | Msa0389950:CDS | 15.0% |
| !!! | TTAATTAATTTTGGTGTAAA+TGG | - | chr3_2:501876-501895 | Msa0389950:CDS | 15.0% |
| !!! | AATGAATATTTTTTTGGATG+GGG | + | chr3_2:500434-500453 | None:intergenic | 20.0% |
| !!! | GAATGAATATTTTTTTGGAT+GGG | + | chr3_2:500435-500454 | None:intergenic | 20.0% |
| !!! | TGAATGAATATTTTTTTGGA+TGG | + | chr3_2:500436-500455 | None:intergenic | 20.0% |
| !!! | AATGAATATTTTTTTGGATG+GGG | + | chr3_2:500434-500453 | None:intergenic | 20.0% |
| !!! | GAATGAATATTTTTTTGGAT+GGG | + | chr3_2:500435-500454 | None:intergenic | 20.0% |
| !!! | TGAATGAATATTTTTTTGGA+TGG | + | chr3_2:500436-500455 | None:intergenic | 20.0% |
| ! | GAAAATACAGTGAATATGTT+GGG | + | chr3_2:500503-500522 | None:intergenic | 25.0% |
| ! | AGAAAATACAGTGAATATGT+TGG | + | chr3_2:500504-500523 | None:intergenic | 25.0% |
| ! | TTCTCTTTACTATACTATAC+TGG | - | chr3_2:500523-500542 | Msa0389950:three_prime_UTR | 25.0% |
| ! | TATGCACAAGTATTTGAAAA+TGG | - | chr3_2:501312-501331 | Msa0389950:CDS | 25.0% |
| ! | AGAGTTGTTTACAAACATTT+AGG | - | chr3_2:501508-501527 | Msa0389950:CDS | 25.0% |
| ! | GAGTTGTTTACAAACATTTA+GGG | - | chr3_2:501509-501528 | Msa0389950:CDS | 25.0% |
| ! | TAATTTAGAGGCTAAATTGA+TGG | + | chr3_2:501698-501717 | None:intergenic | 25.0% |
| ! | AAATCCGTCAATTTAAATTG+AGG | - | chr3_2:501749-501768 | Msa0389950:CDS | 25.0% |
| ! | AATCCGTCAATTTAAATTGA+GGG | - | chr3_2:501750-501769 | Msa0389950:CDS | 25.0% |
| ! | GAAAATACAGTGAATATGTT+GGG | + | chr3_2:500503-500522 | None:intergenic | 25.0% |
| ! | AGAAAATACAGTGAATATGT+TGG | + | chr3_2:500504-500523 | None:intergenic | 25.0% |
| ! | TTCTCTTTACTATACTATAC+TGG | - | chr3_2:500523-500542 | Msa0389950:three_prime_UTR | 25.0% |
| ! | TATGCACAAGTATTTGAAAA+TGG | - | chr3_2:501312-501331 | Msa0389950:CDS | 25.0% |
| ! | AGAGTTGTTTACAAACATTT+AGG | - | chr3_2:501508-501527 | Msa0389950:CDS | 25.0% |
| ! | GAGTTGTTTACAAACATTTA+GGG | - | chr3_2:501509-501528 | Msa0389950:CDS | 25.0% |
| ! | TAATTTAGAGGCTAAATTGA+TGG | + | chr3_2:501698-501717 | None:intergenic | 25.0% |
| ! | AAATCCGTCAATTTAAATTG+AGG | - | chr3_2:501749-501768 | Msa0389950:CDS | 25.0% |
| ! | AATCCGTCAATTTAAATTGA+GGG | - | chr3_2:501750-501769 | Msa0389950:CDS | 25.0% |
| !!! | CTTTTAGCTTGCTTAAATAC+TGG | - | chr3_2:500564-500583 | Msa0389950:three_prime_UTR | 30.0% |
| GTAAACTCTAAGTCAAAGAA+AGG | + | chr3_2:500713-500732 | None:intergenic | 30.0% | |
| AAGAAGAAGAAGAAGAAGAT+GGG | - | chr3_2:500750-500769 | Msa0389950:intron | 30.0% | |
| !! | TTGTTGTTGTTTGTTATGGT+TGG | + | chr3_2:500786-500805 | None:intergenic | 30.0% |
| !! | CTTGTTGTTGTTGTTTGTTA+TGG | + | chr3_2:500790-500809 | None:intergenic | 30.0% |
| TCACTTCTTTCATTGTTTGA+AGG | + | chr3_2:500896-500915 | None:intergenic | 30.0% | |
| TTGAAGAATAAATCCTCTGA+AGG | + | chr3_2:500938-500957 | None:intergenic | 30.0% | |
| TCAGAGGATTTATTCTTCAA+AGG | - | chr3_2:500938-500957 | Msa0389950:intron | 30.0% | |
| !! | CTTCTTTTCAAGAACAGAAT+CGG | + | chr3_2:501113-501132 | None:intergenic | 30.0% |
| ACTTTGAATTTGATTCTCTC+TGG | + | chr3_2:501145-501164 | None:intergenic | 30.0% | |
| !! | TTATTCGTTTTATTCACCTC+TGG | + | chr3_2:501674-501693 | None:intergenic | 30.0% |
| AGTCCCTCAATTTAAATTGA+CGG | + | chr3_2:501756-501775 | None:intergenic | 30.0% | |
| AAATTTCACCAGAATTGTCA+AGG | - | chr3_2:501989-502008 | Msa0389950:CDS | 30.0% | |
| ACCAAGGTAAACAAAAAAAG+AGG | + | chr3_2:502221-502240 | None:intergenic | 30.0% | |
| !!! | CTTTTAGCTTGCTTAAATAC+TGG | - | chr3_2:500564-500583 | Msa0389950:three_prime_UTR | 30.0% |
| GTAAACTCTAAGTCAAAGAA+AGG | + | chr3_2:500713-500732 | None:intergenic | 30.0% | |
| AAGAAGAAGAAGAAGAAGAT+GGG | - | chr3_2:500750-500769 | Msa0389950:intron | 30.0% | |
| !! | TTGTTGTTGTTTGTTATGGT+TGG | + | chr3_2:500786-500805 | None:intergenic | 30.0% |
| !! | CTTGTTGTTGTTGTTTGTTA+TGG | + | chr3_2:500790-500809 | None:intergenic | 30.0% |
| TCACTTCTTTCATTGTTTGA+AGG | + | chr3_2:500896-500915 | None:intergenic | 30.0% | |
| TTGAAGAATAAATCCTCTGA+AGG | + | chr3_2:500938-500957 | None:intergenic | 30.0% | |
| TCAGAGGATTTATTCTTCAA+AGG | - | chr3_2:500938-500957 | Msa0389950:intron | 30.0% | |
| !! | CTTCTTTTCAAGAACAGAAT+CGG | + | chr3_2:501113-501132 | None:intergenic | 30.0% |
| ACTTTGAATTTGATTCTCTC+TGG | + | chr3_2:501145-501164 | None:intergenic | 30.0% | |
| !! | TTATTCGTTTTATTCACCTC+TGG | + | chr3_2:501674-501693 | None:intergenic | 30.0% |
| AGTCCCTCAATTTAAATTGA+CGG | + | chr3_2:501756-501775 | None:intergenic | 30.0% | |
| AAATTTCACCAGAATTGTCA+AGG | - | chr3_2:501989-502008 | Msa0389950:CDS | 30.0% | |
| ACCAAGGTAAACAAAAAAAG+AGG | + | chr3_2:502221-502240 | None:intergenic | 30.0% | |
| AGCTAAAAGCTTCCATTGTT+GGG | + | chr3_2:500553-500572 | None:intergenic | 35.0% | |
| AAGCTAAAAGCTTCCATTGT+TGG | + | chr3_2:500554-500573 | None:intergenic | 35.0% | |
| TCTTCTTCTTCTTCTTCTTC+AGG | + | chr3_2:500740-500759 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+TGG | - | chr3_2:500740-500759 | Msa0389950:intron | 35.0% | |
| ! | GATAGTGAAGATGATGATGA+TGG | - | chr3_2:500833-500852 | Msa0389950:intron | 35.0% |
| !! | GTGAATTGAGGTTTGTTGTT+TGG | + | chr3_2:501025-501044 | None:intergenic | 35.0% |
| AACAATGAAGCAGTGAATTG+AGG | + | chr3_2:501037-501056 | None:intergenic | 35.0% | |
| !! | TCAAGAACAGAATCGGTTTT+TGG | + | chr3_2:501106-501125 | None:intergenic | 35.0% |
| CTGGTGAAAAGTGAAACAAT+GGG | + | chr3_2:501178-501197 | None:intergenic | 35.0% | |
| TCTGGTGAAAAGTGAAACAA+TGG | + | chr3_2:501179-501198 | None:intergenic | 35.0% | |
| !!! | AGATTTGTGGTTGCTGTTTT+TGG | + | chr3_2:501212-501231 | None:intergenic | 35.0% |
| !! | TCTGGTTTGTTTGAGATTTG+TGG | + | chr3_2:501225-501244 | None:intergenic | 35.0% |
| CATGTTCAACTTTCTGATTC+TGG | + | chr3_2:501243-501262 | None:intergenic | 35.0% | |
| TGAACCATCATTATCACCTT+TGG | - | chr3_2:501261-501280 | Msa0389950:CDS | 35.0% | |
| ! | TCTTCCAAAGGTGATAATGA+TGG | + | chr3_2:501268-501287 | None:intergenic | 35.0% |
| GAAAAACGTTTCTCTTCCAA+AGG | + | chr3_2:501280-501299 | None:intergenic | 35.0% | |
| !! | GGAAGAGAAACGTTTTTCAA+AGG | - | chr3_2:501282-501301 | Msa0389950:CDS | 35.0% |
| TGGTGAAACCTCTTTACATA+AGG | - | chr3_2:501332-501351 | Msa0389950:CDS | 35.0% | |
| GGTGAAACCTCTTTACATAA+GGG | - | chr3_2:501333-501352 | Msa0389950:CDS | 35.0% | |
| TTTACATAAGGGTTTCTCGT+AGG | - | chr3_2:501344-501363 | Msa0389950:CDS | 35.0% | |
| ! | GTTTTCTTCACTTTCAGCTA+CGG | + | chr3_2:501437-501456 | None:intergenic | 35.0% |
| GAAACAGGGGAATAATATTC+CGG | - | chr3_2:501477-501496 | Msa0389950:CDS | 35.0% | |
| CTTGATTTCCTTGACAATTC+TGG | + | chr3_2:502000-502019 | None:intergenic | 35.0% | |
| ! | AGATTTTGCACTATGCATAG+TGG | - | chr3_2:502099-502118 | Msa0389950:exon | 35.0% |
| TAGTGGAGAGAAATAGTCAA+AGG | - | chr3_2:502116-502135 | Msa0389950:five_prime_UTR | 35.0% | |
| ATAGTCAAAGGAGACAGTAA+TGG | - | chr3_2:502128-502147 | Msa0389950:five_prime_UTR | 35.0% | |
| AGTAGAACTGTTAGAGATGA+AGG | - | chr3_2:502171-502190 | Msa0389950:five_prime_UTR | 35.0% | |
| !!! | GCCTCTTTTTTTGTTTACCT+TGG | - | chr3_2:502217-502236 | Msa0389950:five_prime_UTR | 35.0% |
| AGCTAAAAGCTTCCATTGTT+GGG | + | chr3_2:500553-500572 | None:intergenic | 35.0% | |
| AAGCTAAAAGCTTCCATTGT+TGG | + | chr3_2:500554-500573 | None:intergenic | 35.0% | |
| TCTTCTTCTTCTTCTTCTTC+AGG | + | chr3_2:500740-500759 | None:intergenic | 35.0% | |
| GAAGAAGAAGAAGAAGAAGA+TGG | - | chr3_2:500740-500759 | Msa0389950:intron | 35.0% | |
| ! | GATAGTGAAGATGATGATGA+TGG | - | chr3_2:500833-500852 | Msa0389950:intron | 35.0% |
| !! | GTGAATTGAGGTTTGTTGTT+TGG | + | chr3_2:501025-501044 | None:intergenic | 35.0% |
| AACAATGAAGCAGTGAATTG+AGG | + | chr3_2:501037-501056 | None:intergenic | 35.0% | |
| !! | TCAAGAACAGAATCGGTTTT+TGG | + | chr3_2:501106-501125 | None:intergenic | 35.0% |
| CTGGTGAAAAGTGAAACAAT+GGG | + | chr3_2:501178-501197 | None:intergenic | 35.0% | |
| TCTGGTGAAAAGTGAAACAA+TGG | + | chr3_2:501179-501198 | None:intergenic | 35.0% | |
| !!! | AGATTTGTGGTTGCTGTTTT+TGG | + | chr3_2:501212-501231 | None:intergenic | 35.0% |
| !! | TCTGGTTTGTTTGAGATTTG+TGG | + | chr3_2:501225-501244 | None:intergenic | 35.0% |
| CATGTTCAACTTTCTGATTC+TGG | + | chr3_2:501243-501262 | None:intergenic | 35.0% | |
| TGAACCATCATTATCACCTT+TGG | - | chr3_2:501261-501280 | Msa0389950:CDS | 35.0% | |
| ! | TCTTCCAAAGGTGATAATGA+TGG | + | chr3_2:501268-501287 | None:intergenic | 35.0% |
| GAAAAACGTTTCTCTTCCAA+AGG | + | chr3_2:501280-501299 | None:intergenic | 35.0% | |
| !! | GGAAGAGAAACGTTTTTCAA+AGG | - | chr3_2:501282-501301 | Msa0389950:CDS | 35.0% |
| TGGTGAAACCTCTTTACATA+AGG | - | chr3_2:501332-501351 | Msa0389950:CDS | 35.0% | |
| GGTGAAACCTCTTTACATAA+GGG | - | chr3_2:501333-501352 | Msa0389950:CDS | 35.0% | |
| TTTACATAAGGGTTTCTCGT+AGG | - | chr3_2:501344-501363 | Msa0389950:CDS | 35.0% | |
| ! | GTTTTCTTCACTTTCAGCTA+CGG | + | chr3_2:501437-501456 | None:intergenic | 35.0% |
| GAAACAGGGGAATAATATTC+CGG | - | chr3_2:501477-501496 | Msa0389950:CDS | 35.0% | |
| CTTGATTTCCTTGACAATTC+TGG | + | chr3_2:502000-502019 | None:intergenic | 35.0% | |
| ! | AGATTTTGCACTATGCATAG+TGG | - | chr3_2:502099-502118 | Msa0389950:exon | 35.0% |
| TAGTGGAGAGAAATAGTCAA+AGG | - | chr3_2:502116-502135 | Msa0389950:five_prime_UTR | 35.0% | |
| ATAGTCAAAGGAGACAGTAA+TGG | - | chr3_2:502128-502147 | Msa0389950:five_prime_UTR | 35.0% | |
| AGTAGAACTGTTAGAGATGA+AGG | - | chr3_2:502171-502190 | Msa0389950:five_prime_UTR | 35.0% | |
| !!! | GCCTCTTTTTTTGTTTACCT+TGG | - | chr3_2:502217-502236 | Msa0389950:five_prime_UTR | 35.0% |
| GTGGTGAAGTGAGAAGAAAA+AGG | + | chr3_2:500478-500497 | None:intergenic | 40.0% | |
| !! | AGTGAAGATGATGATGATGG+TGG | - | chr3_2:500836-500855 | Msa0389950:intron | 40.0% |
| TTGTCGAGAATGAAGGAAGA+AGG | + | chr3_2:500983-501002 | None:intergenic | 40.0% | |
| ! | GTTGTTGTTGTCGAGAATGA+AGG | + | chr3_2:500990-501009 | None:intergenic | 40.0% |
| AGACATGAAGACACGAAACT+TGG | + | chr3_2:501071-501090 | None:intergenic | 40.0% | |
| AAGTTTCGTGTCTTCATGTC+TGG | - | chr3_2:501070-501089 | Msa0389950:CDS | 40.0% | |
| !!! | GTTTTTGGAACTGTTGTCTC+TGG | + | chr3_2:501197-501216 | None:intergenic | 40.0% |
| CGAGAAACCCTTATGTAAAG+AGG | + | chr3_2:501343-501362 | None:intergenic | 40.0% | |
| AAGAGTCAGAGTCAGAAACA+GGG | - | chr3_2:501463-501482 | Msa0389950:CDS | 40.0% | |
| TCTGGTGAAATTTCTCGCAA+TGG | + | chr3_2:501982-502001 | None:intergenic | 40.0% | |
| TCAAGTGACAAGAGACTTTC+AGG | - | chr3_2:502015-502034 | Msa0389950:CDS | 40.0% | |
| !! | GAGACTTTCAGGTTGAAGAA+AGG | - | chr3_2:502026-502045 | Msa0389950:CDS | 40.0% |
| ! | TCAAAGGAGACAGTAATGGA+TGG | - | chr3_2:502132-502151 | Msa0389950:five_prime_UTR | 40.0% |
| !! | CAAAGGAGACAGTAATGGAT+GGG | - | chr3_2:502133-502152 | Msa0389950:five_prime_UTR | 40.0% |
| GTGGTGAAGTGAGAAGAAAA+AGG | + | chr3_2:500478-500497 | None:intergenic | 40.0% | |
| !! | AGTGAAGATGATGATGATGG+TGG | - | chr3_2:500836-500855 | Msa0389950:intron | 40.0% |
| TTGTCGAGAATGAAGGAAGA+AGG | + | chr3_2:500983-501002 | None:intergenic | 40.0% | |
| ! | GTTGTTGTTGTCGAGAATGA+AGG | + | chr3_2:500990-501009 | None:intergenic | 40.0% |
| AGACATGAAGACACGAAACT+TGG | + | chr3_2:501071-501090 | None:intergenic | 40.0% | |
| AAGTTTCGTGTCTTCATGTC+TGG | - | chr3_2:501070-501089 | Msa0389950:CDS | 40.0% | |
| !!! | GTTTTTGGAACTGTTGTCTC+TGG | + | chr3_2:501197-501216 | None:intergenic | 40.0% |
| CGAGAAACCCTTATGTAAAG+AGG | + | chr3_2:501343-501362 | None:intergenic | 40.0% | |
| AAGAGTCAGAGTCAGAAACA+GGG | - | chr3_2:501463-501482 | Msa0389950:CDS | 40.0% | |
| TCTGGTGAAATTTCTCGCAA+TGG | + | chr3_2:501982-502001 | None:intergenic | 40.0% | |
| TCAAGTGACAAGAGACTTTC+AGG | - | chr3_2:502015-502034 | Msa0389950:CDS | 40.0% | |
| !! | GAGACTTTCAGGTTGAAGAA+AGG | - | chr3_2:502026-502045 | Msa0389950:CDS | 40.0% |
| ! | TCAAAGGAGACAGTAATGGA+TGG | - | chr3_2:502132-502151 | Msa0389950:five_prime_UTR | 40.0% |
| !! | CAAAGGAGACAGTAATGGAT+GGG | - | chr3_2:502133-502152 | Msa0389950:five_prime_UTR | 40.0% |
| ACAGTGAATATGTTGGGCAG+TGG | + | chr3_2:500497-500516 | None:intergenic | 45.0% | |
| !! | TATACTGGCTCTCCCAACAA+TGG | - | chr3_2:500538-500557 | Msa0389950:three_prime_UTR | 45.0% |
| ! | AGCTTGCTTAAATACTGGCG+AGG | - | chr3_2:500569-500588 | Msa0389950:three_prime_UTR | 45.0% |
| TTGCTTAAATACTGGCGAGG+TGG | - | chr3_2:500572-500591 | Msa0389950:three_prime_UTR | 45.0% | |
| !! | GAGAATGGTGGTGGTATTGA+CGG | + | chr3_2:500651-500670 | None:intergenic | 45.0% |
| ! | AGCGACGACAATGATGATGA+AGG | - | chr3_2:500686-500705 | Msa0389950:CDS | 45.0% |
| TCTTTCACTGTCACCTTCAG+AGG | - | chr3_2:500922-500941 | Msa0389950:intron | 45.0% | |
| CCATGGTGATAAATCAAGCC+CGG | - | chr3_2:501372-501391 | Msa0389950:CDS | 45.0% | |
| CATGGTGATAAATCAAGCCC+GGG | - | chr3_2:501373-501392 | Msa0389950:CDS | 45.0% | |
| TAAATCAAGCCCGGGTGAAA+AGG | - | chr3_2:501381-501400 | Msa0389950:CDS | 45.0% | |
| ! | TCTGCTTCAACCTTTTCACC+CGG | + | chr3_2:501394-501413 | None:intergenic | 45.0% |
| GGTTGAAGCAGAAATAGCGA+CGG | - | chr3_2:501402-501421 | Msa0389950:CDS | 45.0% | |
| !! | CTGTTTCTGACTCTGACTCT+TGG | + | chr3_2:501464-501483 | None:intergenic | 45.0% |
| CAAGAGTCAGAGTCAGAAAC+AGG | - | chr3_2:501462-501481 | Msa0389950:CDS | 45.0% | |
| AGAGTCAGAGTCAGAAACAG+GGG | - | chr3_2:501464-501483 | Msa0389950:CDS | 45.0% | |
| AGGGGAATAATATTCCGGCA+GGG | - | chr3_2:501482-501501 | Msa0389950:CDS | 45.0% | |
| TAAACAACTCTTAGCCCTGC+CGG | + | chr3_2:501499-501518 | None:intergenic | 45.0% | |
| GCTGCAAAAGCGAATCATCA+CGG | + | chr3_2:501597-501616 | None:intergenic | 45.0% | |
| CAGCAGCAAGATGGAATTCA+AGG | - | chr3_2:501613-501632 | Msa0389950:CDS | 45.0% | |
| AGATCCTTCAATGCATCCAG+AGG | - | chr3_2:501655-501674 | Msa0389950:CDS | 45.0% | |
| TTCACCTCTGGATGCATTGA+AGG | + | chr3_2:501662-501681 | None:intergenic | 45.0% | |
| TTCTCGCAATGGATCACTCA+CGG | + | chr3_2:501971-501990 | None:intergenic | 45.0% | |
| ACAGTGAATATGTTGGGCAG+TGG | + | chr3_2:500497-500516 | None:intergenic | 45.0% | |
| !! | TATACTGGCTCTCCCAACAA+TGG | - | chr3_2:500538-500557 | Msa0389950:three_prime_UTR | 45.0% |
| ! | AGCTTGCTTAAATACTGGCG+AGG | - | chr3_2:500569-500588 | Msa0389950:three_prime_UTR | 45.0% |
| TTGCTTAAATACTGGCGAGG+TGG | - | chr3_2:500572-500591 | Msa0389950:three_prime_UTR | 45.0% | |
| !! | GAGAATGGTGGTGGTATTGA+CGG | + | chr3_2:500651-500670 | None:intergenic | 45.0% |
| ! | AGCGACGACAATGATGATGA+AGG | - | chr3_2:500686-500705 | Msa0389950:CDS | 45.0% |
| TCTTTCACTGTCACCTTCAG+AGG | - | chr3_2:500922-500941 | Msa0389950:intron | 45.0% | |
| CCATGGTGATAAATCAAGCC+CGG | - | chr3_2:501372-501391 | Msa0389950:CDS | 45.0% | |
| CATGGTGATAAATCAAGCCC+GGG | - | chr3_2:501373-501392 | Msa0389950:CDS | 45.0% | |
| TAAATCAAGCCCGGGTGAAA+AGG | - | chr3_2:501381-501400 | Msa0389950:CDS | 45.0% | |
| ! | TCTGCTTCAACCTTTTCACC+CGG | + | chr3_2:501394-501413 | None:intergenic | 45.0% |
| GGTTGAAGCAGAAATAGCGA+CGG | - | chr3_2:501402-501421 | Msa0389950:CDS | 45.0% | |
| !! | CTGTTTCTGACTCTGACTCT+TGG | + | chr3_2:501464-501483 | None:intergenic | 45.0% |
| CAAGAGTCAGAGTCAGAAAC+AGG | - | chr3_2:501462-501481 | Msa0389950:CDS | 45.0% | |
| AGAGTCAGAGTCAGAAACAG+GGG | - | chr3_2:501464-501483 | Msa0389950:CDS | 45.0% | |
| AGGGGAATAATATTCCGGCA+GGG | - | chr3_2:501482-501501 | Msa0389950:CDS | 45.0% | |
| TAAACAACTCTTAGCCCTGC+CGG | + | chr3_2:501499-501518 | None:intergenic | 45.0% | |
| GCTGCAAAAGCGAATCATCA+CGG | + | chr3_2:501597-501616 | None:intergenic | 45.0% | |
| CAGCAGCAAGATGGAATTCA+AGG | - | chr3_2:501613-501632 | Msa0389950:CDS | 45.0% | |
| AGATCCTTCAATGCATCCAG+AGG | - | chr3_2:501655-501674 | Msa0389950:CDS | 45.0% | |
| TTCACCTCTGGATGCATTGA+AGG | + | chr3_2:501662-501681 | None:intergenic | 45.0% | |
| TTCTCGCAATGGATCACTCA+CGG | + | chr3_2:501971-501990 | None:intergenic | 45.0% | |
| CTTAAATACTGGCGAGGTGG+TGG | - | chr3_2:500575-500594 | Msa0389950:three_prime_UTR | 50.0% | |
| !! | AATGGTGGTGGTATTGACGG+TGG | + | chr3_2:500648-500667 | None:intergenic | 50.0% |
| ! | ATTGTCGTCGCTGCTTTCAG+CGG | + | chr3_2:500678-500697 | None:intergenic | 50.0% |
| GTTTCTCGTAGGTACAGCCA+TGG | - | chr3_2:501355-501374 | Msa0389950:CDS | 50.0% | |
| CCGGGCTTGATTTATCACCA+TGG | + | chr3_2:501375-501394 | None:intergenic | 50.0% | |
| ! | CTGCTTCAACCTTTTCACCC+GGG | + | chr3_2:501393-501412 | None:intergenic | 50.0% |
| GAAGCAGAAATAGCGACGGA+AGG | - | chr3_2:501406-501425 | Msa0389950:CDS | 50.0% | |
| CAGGGGAATAATATTCCGGC+AGG | - | chr3_2:501481-501500 | Msa0389950:CDS | 50.0% | |
| CGTTTCGACGACACTAACAC+CGG | + | chr3_2:501574-501593 | None:intergenic | 50.0% | |
| !! | TCGCTTTTGCAGCAGCAAGA+TGG | - | chr3_2:501604-501623 | Msa0389950:CDS | 50.0% |
| AATGGATCACTCACGGAACG+TGG | + | chr3_2:501964-501983 | None:intergenic | 50.0% | |
| CTTAAATACTGGCGAGGTGG+TGG | - | chr3_2:500575-500594 | Msa0389950:three_prime_UTR | 50.0% | |
| !! | AATGGTGGTGGTATTGACGG+TGG | + | chr3_2:500648-500667 | None:intergenic | 50.0% |
| ! | ATTGTCGTCGCTGCTTTCAG+CGG | + | chr3_2:500678-500697 | None:intergenic | 50.0% |
| GTTTCTCGTAGGTACAGCCA+TGG | - | chr3_2:501355-501374 | Msa0389950:CDS | 50.0% | |
| CCGGGCTTGATTTATCACCA+TGG | + | chr3_2:501375-501394 | None:intergenic | 50.0% | |
| ! | CTGCTTCAACCTTTTCACCC+GGG | + | chr3_2:501393-501412 | None:intergenic | 50.0% |
| GAAGCAGAAATAGCGACGGA+AGG | - | chr3_2:501406-501425 | Msa0389950:CDS | 50.0% | |
| CAGGGGAATAATATTCCGGC+AGG | - | chr3_2:501481-501500 | Msa0389950:CDS | 50.0% | |
| CGTTTCGACGACACTAACAC+CGG | + | chr3_2:501574-501593 | None:intergenic | 50.0% | |
| !! | TCGCTTTTGCAGCAGCAAGA+TGG | - | chr3_2:501604-501623 | Msa0389950:CDS | 50.0% |
| AATGGATCACTCACGGAACG+TGG | + | chr3_2:501964-501983 | None:intergenic | 50.0% | |
| !! | GTGGTGGTGGAGTCAGAAGA+AGG | + | chr3_2:500620-500639 | None:intergenic | 55.0% |
| !! | ATTGACGGTGGTGGAAGTGG+TGG | + | chr3_2:500636-500655 | None:intergenic | 55.0% |
| !! | GGTATTGACGGTGGTGGAAG+TGG | + | chr3_2:500639-500658 | None:intergenic | 55.0% |
| TTCAGCGGTGGTGAGAATGG+TGG | + | chr3_2:500663-500682 | None:intergenic | 55.0% | |
| GCTTTCAGCGGTGGTGAGAA+TGG | + | chr3_2:500666-500685 | None:intergenic | 55.0% | |
| TTCGACGACACTAACACCGG+CGG | + | chr3_2:501571-501590 | None:intergenic | 55.0% | |
| !! | GTGGTGGTGGAGTCAGAAGA+AGG | + | chr3_2:500620-500639 | None:intergenic | 55.0% |
| !! | ATTGACGGTGGTGGAAGTGG+TGG | + | chr3_2:500636-500655 | None:intergenic | 55.0% |
| !! | GGTATTGACGGTGGTGGAAG+TGG | + | chr3_2:500639-500658 | None:intergenic | 55.0% |
| TTCAGCGGTGGTGAGAATGG+TGG | + | chr3_2:500663-500682 | None:intergenic | 55.0% | |
| GCTTTCAGCGGTGGTGAGAA+TGG | + | chr3_2:500666-500685 | None:intergenic | 55.0% | |
| TTCGACGACACTAACACCGG+CGG | + | chr3_2:501571-501590 | None:intergenic | 55.0% | |
| !! | CGAGGTGGTGGTGCTGTAGT+TGG | - | chr3_2:500587-500606 | Msa0389950:three_prime_UTR | 60.0% |
| !! | GGTGGTGGTATTGACGGTGG+TGG | + | chr3_2:500645-500664 | None:intergenic | 60.0% |
| AGCGGTGGTGAGAATGGTGG+TGG | + | chr3_2:500660-500679 | None:intergenic | 60.0% | |
| GAAGAGCCGTTCCGCGTCTT+CGG | - | chr3_2:501531-501550 | Msa0389950:CDS | 60.0% | |
| !! | CGAGGTGGTGGTGCTGTAGT+TGG | - | chr3_2:500587-500606 | Msa0389950:three_prime_UTR | 60.0% |
| !! | GGTGGTGGTATTGACGGTGG+TGG | + | chr3_2:500645-500664 | None:intergenic | 60.0% |
| AGCGGTGGTGAGAATGGTGG+TGG | + | chr3_2:500660-500679 | None:intergenic | 60.0% | |
| GAAGAGCCGTTCCGCGTCTT+CGG | - | chr3_2:501531-501550 | Msa0389950:CDS | 60.0% | |
| !! | GACGGTGGTGGAAGTGGTGG+TGG | + | chr3_2:500633-500652 | None:intergenic | 65.0% |
| ! | GTCGTCGCTGCTTTCAGCGG+TGG | + | chr3_2:500675-500694 | None:intergenic | 65.0% |
| CCACTGCCGAAGACGCGGAA+CGG | + | chr3_2:501540-501559 | None:intergenic | 65.0% | |
| TTCCGCGTCTTCGGCAGTGG+CGG | - | chr3_2:501540-501559 | Msa0389950:CDS | 65.0% | |
| !! | GACGGTGGTGGAAGTGGTGG+TGG | + | chr3_2:500633-500652 | None:intergenic | 65.0% |
| ! | GTCGTCGCTGCTTTCAGCGG+TGG | + | chr3_2:500675-500694 | None:intergenic | 65.0% |
| CCACTGCCGAAGACGCGGAA+CGG | + | chr3_2:501540-501559 | None:intergenic | 65.0% | |
| TTCCGCGTCTTCGGCAGTGG+CGG | - | chr3_2:501540-501559 | Msa0389950:CDS | 65.0% | |
| CCGTTCCGCGTCTTCGGCAG+TGG | - | chr3_2:501537-501556 | Msa0389950:CDS | 70.0% | |
| AGCCGCCACTGCCGAAGACG+CGG | + | chr3_2:501545-501564 | None:intergenic | 70.0% | |
| CCGTTCCGCGTCTTCGGCAG+TGG | - | chr3_2:501537-501556 | Msa0389950:CDS | 70.0% | |
| AGCCGCCACTGCCGAAGACG+CGG | + | chr3_2:501545-501564 | None:intergenic | 70.0% | |
| GGCAGTGGCGGCTTCTCCGC+CGG | - | chr3_2:501552-501571 | Msa0389950:CDS | 75.0% | |
| GGCAGTGGCGGCTTCTCCGC+CGG | - | chr3_2:501552-501571 | Msa0389950:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 500411 | 502250 | 500411 | ID=Msa0389950;Name=Msa0389950 |
| chr3_2 | mRNA | 500411 | 502250 | 500411 | ID=Msa0389950-mRNA-1;Parent=Msa0389950;Name=Msa0389950-mRNA-1;_AED=0.00;_eAED=0.00;_QI=146|1|1|1|1|1|2|209|407 |
| chr3_2 | exon | 500411 | 500723 | 500411 | ID=Msa0389950-mRNA-1:exon:112;Parent=Msa0389950-mRNA-1 |
| chr3_2 | exon | 500985 | 502250 | 500985 | ID=Msa0389950-mRNA-1:exon:111;Parent=Msa0389950-mRNA-1 |
| chr3_2 | five_prime_UTR | 502105 | 502250 | 502105 | ID=Msa0389950-mRNA-1:five_prime_utr;Parent=Msa0389950-mRNA-1 |
| chr3_2 | CDS | 500985 | 502104 | 500985 | ID=Msa0389950-mRNA-1:cds;Parent=Msa0389950-mRNA-1 |
| chr3_2 | CDS | 500620 | 500723 | 500620 | ID=Msa0389950-mRNA-1:cds;Parent=Msa0389950-mRNA-1 |
| chr3_2 | three_prime_UTR | 500411 | 500619 | 500411 | ID=Msa0389950-mRNA-1:three_prime_utr;Parent=Msa0389950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
