AlfalfaGEDB | Msa0652070

M. sativa cultivar zhongmu-4 / Msa0652070

KEGG: -
GO: -
PFAM: PF10497.12

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0652070	XP_003608058.1	93.046	302	14	3	17	313	20	319	0.0	557

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0652070	sp\|Q922M5\|CDA7L_MOUSE	44.118	102	55	1	166	265	330	431	9.87e-23	100

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0016040	Msa0652070	0.801992	6.930356e-49	-8.615850e-47
Msa0025580	Msa0652070	0.814731	1.326940e-51	-8.615850e-47
Msa0035140	Msa0652070	0.819221	1.301137e-52	-8.615850e-47
Msa0053070	Msa0652070	0.815276	1.004523e-51	-8.615850e-47
Msa0121330	Msa0652070	0.801860	7.375201e-49	-8.615850e-47
Msa0140280	Msa0652070	0.807910	4.012719e-50	-8.615850e-47
Msa0367520	Msa0652070	0.814518	1.478930e-51	-8.615850e-47
Msa0389950	Msa0652070	0.829925	3.917499e-55	-8.615850e-47
Msa0430300	Msa0652070	0.803695	3.083440e-49	-8.615850e-47
Msa0476280	Msa0652070	0.803017	4.260064e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0652070	MtrunA17_Chr4g0045521	93.046	302	14	3	17	313	20	319	0.0	557
Msa0652070	MtrunA17_Chr5g0402951	50.617	243	108	3	39	276	29	264	2.07e-78	244
Msa0652070	MtrunA17_Chr5g0402961	50.000	240	107	2	39	272	30	262	1.70e-69	221
Msa0652070	MtrunA17_Chr6g0479091	28.421	285	149	10	37	266	7	291	8.72e-17	79.3
Msa0652070	MtrunA17_Chr6g0457221	36.066	122	67	3	165	280	34	150	1.18e-16	80.5
Msa0652070	MtrunA17_Chr6g0457161	33.088	136	74	4	165	288	43	173	5.17e-15	75.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0652070	AT2G23530.1	49.796	245	97	5	39	271	29	259	1.08e-71	231
Msa0652070	AT4G37110.1	45.385	260	115	5	39	276	29	283	9.83e-69	220
Msa0652070	AT4G37110.2	47.773	247	115	5	39	276	29	270	5.03e-68	218
Msa0652070	AT4G37110.3	51.099	182	83	3	96	276	12	188	3.50e-61	197
Msa0652070	AT4G37110.4	51.099	182	83	3	96	276	12	188	3.50e-61	197
Msa0652070	AT1G67780.2	34.307	137	71	3	165	295	23	146	1.08e-16	80.9
Msa0652070	AT1G67780.1	34.307	137	71	3	165	295	23	146	1.08e-16	80.9
Msa0652070	AT5G38690.2	37.624	101	60	1	168	265	23	123	4.21e-14	73.2
Msa0652070	AT5G38690.1	37.624	101	60	1	168	265	23	123	4.21e-14	73.2
Msa0652070	AT1G67270.1	36.538	104	63	1	165	265	15	118	1.24e-13	71.6

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Find 92 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTCATCAAGTAAGAAA+AGG	0.473277	4_3:+59772261	Msa0652070:CDS
AACAAATGTGAATTACCCCA+AGG	0.685873	4_3:+59773163	Msa0652070:CDS
AAGAATGTTATCAAAACTCG+GGG	0.686682	4_3:-59774118	None:intergenic
AAGATGGTGATACTATGTTT+TGG	0.372791	4_3:+59773999	Msa0652070:three_prime_UTR
AAGCCAGCATCAATCCCAAG+TGG	0.668388	4_3:+59773430	Msa0652070:CDS
AAGTAAGAAAAGGAAGGAAG+TGG	0.520203	4_3:+59772271	Msa0652070:CDS
AATAATGTTACCTTGTGTAG+AGG	0.592456	4_3:-59773204	None:intergenic
AATCTCCACAAAGCCGTCCT+TGG	0.429942	4_3:-59773180	None:intergenic
AATGTGAATTACCCCAAGGA+CGG	0.664710	4_3:+59773167	Msa0652070:CDS
ACAAGAAGGGCAAGTCCACT+TGG	0.490962	4_3:-59773445	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAGCACTATTTATTGCTTGT+TGG	+	chr4_3:59771402-59771421	Msa0652070:intron	30.0%
TCACATACACTTCAGATTAA+AGG	-	chr4_3:59771472-59771491	None:intergenic	30.0%
ACAAATCTGATGAAATTGTG+CGG	+	chr4_3:59771732-59771751	Msa0652070:intron	30.0%
TGACATGTTTGTGTTATGTT+TGG	+	chr4_3:59771947-59771966	Msa0652070:intron	30.0%
AAACATGTTACCATTAAGTG+TGG	-	chr4_3:59772092-59772111	None:intergenic	30.0%
TTCATCAAGTAAGAAAAGGA+AGG	+	chr4_3:59772265-59772284	Msa0652070:CDS	30.0%
CCTTGATTGGATCATATATA+TGG	-	chr4_3:59772415-59772434	None:intergenic	30.0%
CCATATATATGATCCAATCA+AGG	+	chr4_3:59772412-59772431	Msa0652070:CDS	30.0%
CTAAAAACCCTTCAATTCAT+AGG	-	chr4_3:59772522-59772541	None:intergenic	30.0%
TCCCATTAAAAAATTGGCTA+TGG	-	chr4_3:59772859-59772878	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	59771056	59774222	59771056	ID=Msa0652070;Name=Msa0652070
chr4_3	mRNA	59771056	59774222	59771056	ID=Msa0652070-mRNA-1;Parent=Msa0652070;Name=Msa0652070-mRNA-1;_AED=0.01;_eAED=0.01;_QI=4\|1\|1\|1\|1\|1\|5\|285\|313
chr4_3	exon	59771056	59771346	59771056	ID=Msa0652070-mRNA-1:exon:16022;Parent=Msa0652070-mRNA-1
chr4_3	exon	59772202	59772456	59772202	ID=Msa0652070-mRNA-1:exon:16023;Parent=Msa0652070-mRNA-1
chr4_3	exon	59773132	59773215	59773132	ID=Msa0652070-mRNA-1:exon:16024;Parent=Msa0652070-mRNA-1
chr4_3	exon	59773410	59773539	59773410	ID=Msa0652070-mRNA-1:exon:16025;Parent=Msa0652070-mRNA-1
chr4_3	exon	59773752	59774222	59773752	ID=Msa0652070-mRNA-1:exon:16026;Parent=Msa0652070-mRNA-1
chr4_3	five_prime_UTR	59771056	59771059	59771056	ID=Msa0652070-mRNA-1:five_prime_utr;Parent=Msa0652070-mRNA-1
chr4_3	CDS	59771060	59771346	59771060	ID=Msa0652070-mRNA-1:cds;Parent=Msa0652070-mRNA-1
chr4_3	CDS	59772202	59772456	59772202	ID=Msa0652070-mRNA-1:cds;Parent=Msa0652070-mRNA-1
chr4_3	CDS	59773132	59773215	59773132	ID=Msa0652070-mRNA-1:cds;Parent=Msa0652070-mRNA-1
chr4_3	CDS	59773410	59773539	59773410	ID=Msa0652070-mRNA-1:cds;Parent=Msa0652070-mRNA-1
chr4_3	CDS	59773752	59773937	59773752	ID=Msa0652070-mRNA-1:cds;Parent=Msa0652070-mRNA-1
chr4_3	three_prime_UTR	59773938	59774222	59773938	ID=Msa0652070-mRNA-1:three_prime_utr;Parent=Msa0652070-mRNA-1

Gene Sequence

>Msa0652070

ATGGGAACTCGTCGTAGAAGGAGAAGCGAAGAAGAAGAATCAGCTTCTGAAGATGGCGGCGCCACCACGGCGAAAACTGACGGTGACGAAGGTGTTGTCGTTTCAGGTTCATCATCGCATTACGAACAGATTCGGGAACAAAGGATGAAAGAGAACGCTGAGAGAATGCATAAGCTTGGTTTGTTAAAGCTTTCTGGTAACCTCAAGAAAACACCAACACCGCGCCCCTCCGTCAAGAAAAACTCCTCGTTACCATCCAACGAATCTGAAAGACGTTCTTCTTCTAGACTATCGACCCTACCACCAGTTAACTATTGTGACAAGCGTCCTAAAGCAGAGCGTCAAGAAAGTTCATCAAGTAAGAAAAGGAAGGAAGTGGAAATTCATATACCAGAAGGCACAAACCCTGAAGTTTACACTGAAGAGCATGAGAAGCTGCTAGGAGATTGTGAGACTGATTGGGAATTGTATGTAGATGGATATGATGAGGATGGGGACCATATATATGATCCAATCAAGGGAGAGAAATGTCATCAATGCGGGCGCTTAACTGTTGGTCAGCTGACCGATTGCAACAAATGTGAATTACCCCAAGGACGGCTTTGTGGAGATTGCCTCTACACAAGGTATGGAGAAAATGTGACAGAAGCCAGCATCAATCCCAAGTGGACTTGCCCTTCTTGTCGAGAAATTTGCAACTGCAATAGCTGCCGTAGGAAAAATGGTTGGATGCATACTGGTAATATATACAATAAGGTGACGAAATTGGGTTTCAAATCTGTTGCTCATTATCTGATTAAGACCCGTCGCTCTGAGGAAAGCATGGAAGGATCAGGTGCTGAAAATAATGTTGCCAAAGAAATACCAGAGATCTCTCCAGATTCAACACTGACTAGGACACTGAGTAGGCCAATTCGGACGAGAAGGGCTCTGAGAAGTTAA

Protein sequence

>Msa0652070

MGTRRRRRSEEEESASEDGGATTAKTDGDEGVVVSGSSSHYEQIREQRMKENAERMHKLGLLKLSGNLKKTPTPRPSVKKNSSLPSNESERRSSSRLSTLPPVNYCDKRPKAERQESSSSKKRKEVEIHIPEGTNPEVYTEEHEKLLGDCETDWELYVDGYDEDGDHIYDPIKGEKCHQCGRLTVGQLTDCNKCELPQGRLCGDCLYTRYGENVTEASINPKWTCPSCREICNCNSCRRKNGWMHTGNIYNKVTKLGFKSVAHYLIKTRRSEESMEGSGAENNVAKEIPEISPDSTLTRTLSRPIRTRRALRS*