Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172040 | XP_039685040.1 | 83.333 | 288 | 7 | 1 | 1 | 247 | 1 | 288 | 1.45e-167 | 474 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172040 | G7I6T0 | 83.333 | 288 | 7 | 1 | 1 | 247 | 1 | 288 | 6.92e-168 | 474 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032010 | Msa0172040 | 0.864737 | 9.802792e-65 | -8.615850e-47 |
| Msa0095150 | Msa0172040 | -0.803565 | 3.280676e-49 | -8.615850e-47 |
| Msa0118620 | Msa0172040 | 0.841439 | 4.748986e-58 | -8.615850e-47 |
| Msa0172040 | Msa0378440 | -0.800723 | 1.260912e-48 | -8.615850e-47 |
| Msa0172040 | Msa0460510 | -0.801693 | 7.980962e-49 | -8.615850e-47 |
| Msa0172040 | Msa0554770 | -0.809614 | 1.734602e-50 | -8.615850e-47 |
| Msa0172040 | Msa0582590 | -0.800268 | 1.560846e-48 | -8.615850e-47 |
| Msa0172040 | Msa0612920 | 0.807433 | 5.066480e-50 | -8.615850e-47 |
| Msa0172040 | Msa0653540 | 0.801642 | 8.176915e-49 | -8.615850e-47 |
| Msa0172040 | Msa0742690 | -0.811165 | 8.024030e-51 | -8.615850e-47 |
| Msa0172040 | Msa0827560 | -0.809650 | 1.703949e-50 | -8.615850e-47 |
| Msa0172040 | Msa0869060 | -0.811614 | 6.411300e-51 | -8.615850e-47 |
| Msa0172040 | Msa1086420 | -0.815369 | 9.576560e-52 | -8.615850e-47 |
| Msa0172040 | Msa1354860 | -0.810287 | 1.242401e-50 | -8.615850e-47 |
| Msa0172040 | Msa1394110 | -0.801684 | 8.016913e-49 | -8.615850e-47 |
| Msa0172040 | Msa1397560 | -0.801739 | 7.810773e-49 | -8.615850e-47 |
| Msa0172040 | Msa1455330 | 0.802386 | 5.750640e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172040 | MtrunA17_Chr1g0190271 | 83.333 | 288 | 7 | 1 | 1 | 247 | 1 | 288 | 1.33e-171 | 474 |
| Msa0172040 | MtrunA17_Chr4g0018611 | 49.162 | 179 | 84 | 4 | 65 | 237 | 125 | 302 | 1.18e-43 | 149 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0172040 | AT5G09380.2 | 40.167 | 239 | 127 | 8 | 12 | 245 | 45 | 272 | 6.00e-46 | 154 |
| Msa0172040 | AT5G09380.1 | 39.910 | 223 | 112 | 8 | 31 | 245 | 8 | 216 | 2.15e-44 | 149 |
| Msa0172040 | AT4G25180.1 | 40.957 | 188 | 108 | 3 | 60 | 245 | 121 | 307 | 5.92e-38 | 135 |
| Msa0172040 | AT5G09380.3 | 39.594 | 197 | 103 | 8 | 12 | 203 | 45 | 230 | 1.18e-30 | 114 |
Find 71 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTTGATGAGAAGGAATT+TGG | 0.103967 | 1_4:+56945413 | Msa0172040:CDS |
| GACTTGCCACGTGGCTTAAT+TGG | 0.190314 | 1_4:+56945727 | Msa0172040:CDS |
| GATTATTATGGATTTGAATA+AGG | 0.218725 | 1_4:+56943410 | Msa0172040:exon |
| GATCATCACACGGTGGTTTC+CGG | 0.222057 | 1_4:+56943227 | Msa0172040:five_prime_UTR |
| AGATCGCCATTGGATTATTA+TGG | 0.222843 | 1_4:+56943398 | Msa0172040:exon |
| TTACCTGGGTTGCCTGAATA+TGG | 0.269034 | 1_4:-56945110 | None:intergenic |
| AGCAGTGGAGCTTGACCTTT+TGG | 0.287647 | 1_4:+56945481 | Msa0172040:CDS |
| AACTTGATGAGAAGGAATTT+GGG | 0.290510 | 1_4:+56945414 | Msa0172040:CDS |
| TTCCTCAAGGGATGAACTAT+TGG | 0.311119 | 1_4:-56945086 | None:intergenic |
| TTACCTTCACAAATTGCTTT+TGG | 0.328302 | 1_4:+56944693 | Msa0172040:CDS |
| TTCACTCTTGCTCCCACCTT+TGG | 0.334265 | 1_4:-56944754 | None:intergenic |
| ATGAAGAACGCACTTGCCTC+TGG | 0.347213 | 1_4:-56945601 | None:intergenic |
| ATGATTTGAGATAAGTTGAT+TGG | 0.369910 | 1_4:-56944725 | None:intergenic |
| ATCGGAAAAGGAGGGATTAC+AGG | 0.370857 | 1_4:-56943207 | None:intergenic |
| TGTAGGAGAATGCGATGAAT+AGG | 0.372729 | 1_4:+56944038 | Msa0172040:intron |
| ATGCGGTACTTACATCATAA+AGG | 0.374896 | 1_4:-56945801 | None:intergenic |
| TGCGCTTTCATCATAAGTTC+TGG | 0.411273 | 1_4:-56945450 | None:intergenic |
| CCCTTGAGGAAACCATATTC+AGG | 0.422684 | 1_4:+56945098 | Msa0172040:CDS |
| TTATCTTTACCATCAGCATC+TGG | 0.431495 | 1_4:-56945658 | None:intergenic |
| TCAAGTGCGGCATCTATGTC+CGG | 0.435813 | 1_4:-56946632 | None:intergenic |
| TCAACTTATCTCAAATCATA+TGG | 0.456525 | 1_4:+56944729 | Msa0172040:CDS |
| AAAGCCTCCTCAACGAAGAA+AGG | 0.458707 | 1_4:+56943437 | Msa0172040:CDS |
| TGCGGTACTTACATCATAAA+GGG | 0.465322 | 1_4:-56945800 | None:intergenic |
| CACCGTGTGATGATCGGAAA+AGG | 0.467365 | 1_4:-56943219 | None:intergenic |
| AAATGGTTGCAGGTTTCCTC+GGG | 0.477537 | 1_4:+56946512 | Msa0172040:intron |
| AAAATGGTTGCAGGTTTCCT+CGG | 0.489431 | 1_4:+56946511 | Msa0172040:intron |
| TTTATTTATTTATTGAAGAT+CGG | 0.497583 | 1_4:+56946761 | Msa0172040:three_prime_UTR |
| GCCGCACCTCTATAACCTCC+AGG | 0.501297 | 1_4:-56945685 | None:intergenic |
| GGAAACCACCGTGTGATGAT+CGG | 0.505022 | 1_4:-56943225 | None:intergenic |
| AAGCGCCCTGGAGGTTATAG+AGG | 0.508087 | 1_4:+56945679 | Msa0172040:CDS |
| CAAGTGCGGCATCTATGTCC+GGG | 0.508235 | 1_4:-56946631 | None:intergenic |
| TGAAAGAAAATAGAAATGCT+TGG | 0.508821 | 1_4:+56946831 | Msa0172040:three_prime_UTR |
| AGTGAAAATTCAGCATTCAA+TGG | 0.517856 | 1_4:+56944771 | Msa0172040:CDS |
| CCTGAATATGGTTTCCTCAA+GGG | 0.520964 | 1_4:-56945098 | None:intergenic |
| CTCAAATCATATGGTACCAA+AGG | 0.523662 | 1_4:+56944738 | Msa0172040:CDS |
| CAAACCTTTCTTCGTTGAGG+AGG | 0.525936 | 1_4:-56943441 | None:intergenic |
| AAATCATATGGTACCAAAGG+TGG | 0.526126 | 1_4:+56944741 | Msa0172040:CDS |
| TGAAGAACGCACTTGCCTCT+GGG | 0.526977 | 1_4:-56945600 | None:intergenic |
| GATGGTAAAGATAAGCGCCC+TGG | 0.537069 | 1_4:+56945667 | Msa0172040:CDS |
| TCTTAATAAATATAGAAAGA+AGG | 0.539399 | 1_4:+56946719 | Msa0172040:three_prime_UTR |
| GCCTGAATATGGTTTCCTCA+AGG | 0.542011 | 1_4:-56945099 | None:intergenic |
| AAACAAACCTTTCTTCGTTG+AGG | 0.553359 | 1_4:-56943444 | None:intergenic |
| CAAGTTTGCTACTGTAACCC+CGG | 0.554282 | 1_4:+56946613 | Msa0172040:CDS |
| GGTAAAGTTAAGCTGAAGCT+TGG | 0.557395 | 1_4:+56945772 | Msa0172040:CDS |
| AAGCGCAGCAAGTTCAGCAG+TGG | 0.565227 | 1_4:+56945466 | Msa0172040:CDS |
| GCGGAAAGACGTTGGAGAGG+AGG | 0.569442 | 1_4:-56943185 | None:intergenic |
| CGGAGGCTTGACGCAGGAGA+CGG | 0.577002 | 1_4:-56943156 | None:intergenic |
| AAACCATATTCAGGCAACCC+AGG | 0.586222 | 1_4:+56945107 | Msa0172040:CDS |
| AGAAAGAATACAAAGAACCA+TGG | 0.590402 | 1_4:+56944908 | Msa0172040:CDS |
| TCAAATCCATAATAATCCAA+TGG | 0.597623 | 1_4:-56943404 | None:intergenic |
| CGTGTGATGATCGGAAAAGG+AGG | 0.600298 | 1_4:-56943216 | None:intergenic |
| GATTACAGGCGGAAAGACGT+TGG | 0.600372 | 1_4:-56943193 | None:intergenic |
| ATCCAATAGTTCATCCCTTG+AGG | 0.604156 | 1_4:+56945084 | Msa0172040:CDS |
| GCACCAAAAGCAATTTGTGA+AGG | 0.606014 | 1_4:-56944696 | None:intergenic |
| GAAAGAATACAAAGAACCAT+GGG | 0.607191 | 1_4:+56944909 | Msa0172040:CDS |
| CCGCACCTCTATAACCTCCA+GGG | 0.614948 | 1_4:-56945684 | None:intergenic |
| ACTTGATGAGAAGGAATTTG+GGG | 0.615962 | 1_4:+56945415 | Msa0172040:CDS |
| CCCTGGAGGTTATAGAGGTG+CGG | 0.619090 | 1_4:+56945684 | Msa0172040:CDS |
| AATCATATGGTACCAAAGGT+GGG | 0.623535 | 1_4:+56944742 | Msa0172040:CDS |
| TGATGAGAAGGAATTTGGGG+AGG | 0.643571 | 1_4:+56945418 | Msa0172040:CDS |
| ATCACTTAAACAATCAAGTG+CGG | 0.644848 | 1_4:-56946645 | None:intergenic |
| TTAATCATAGGAATAACTGG+TGG | 0.659717 | 1_4:-56945631 | None:intergenic |
| GTGTGATGATCGGAAAAGGA+GGG | 0.660832 | 1_4:-56943215 | None:intergenic |
| CAGGCGGAAAGACGTTGGAG+AGG | 0.662658 | 1_4:-56943188 | None:intergenic |
| AAATATACAATTCATACCCG+AGG | 0.667331 | 1_4:-56946528 | None:intergenic |
| AAGTGCGGCATCTATGTCCG+GGG | 0.672815 | 1_4:-56946630 | None:intergenic |
| GGTAAAGATAAGCGCCCTGG+AGG | 0.687013 | 1_4:+56945670 | Msa0172040:CDS |
| AAAATGCTTGTGTACAAGAG+TGG | 0.690377 | 1_4:+56945751 | Msa0172040:CDS |
| GGAAAAGGAGGGATTACAGG+CGG | 0.702275 | 1_4:-56943204 | None:intergenic |
| AAGTTGAACGACTTGCCACG+TGG | 0.717217 | 1_4:+56945718 | Msa0172040:CDS |
| TTGGCAGGAGGAAAACCCAG+AGG | 0.776096 | 1_4:+56945585 | Msa0172040:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAGTAAATTAAATTAGA+TGG | + | chr1_4:56945175-56945194 | Msa0172040:intron | 10.0% |
| !! | TTTATTTATTTATTGAAGAT+CGG | + | chr1_4:56946761-56946780 | Msa0172040:three_prime_UTR | 10.0% |
| !! | TAATTATATACTAATCATAG+AGG | + | chr1_4:56946240-56946259 | Msa0172040:intron | 15.0% |
| !! | TCTTAATAAATATAGAAAGA+AGG | + | chr1_4:56946719-56946738 | Msa0172040:three_prime_UTR | 15.0% |
| !! | GATTATTATGGATTTGAATA+AGG | + | chr1_4:56943410-56943429 | Msa0172040:exon | 20.0% |
| !!! | CGTTTCAATGTTTTTTTTTT+TGG | + | chr1_4:56943494-56943513 | Msa0172040:intron | 20.0% |
| !! | AGTACAAACTATTATCAAAT+AGG | - | chr1_4:56943717-56943736 | None:intergenic | 20.0% |
| !!! | TCACAATGTATATGTTATTT+CGG | + | chr1_4:56943927-56943946 | Msa0172040:intron | 20.0% |
| !! | ATTTAAAAGTCACATAAAGT+TGG | - | chr1_4:56944126-56944145 | None:intergenic | 20.0% |
| !!! | ACTTTATGTGACTTTTAAAT+CGG | + | chr1_4:56944126-56944145 | Msa0172040:intron | 20.0% |
| !!! | AAAATTGGTCATTTTAAAGA+TGG | - | chr1_4:56944283-56944302 | None:intergenic | 20.0% |
| !! | AATCTCATAATTCTGTAAAA+AGG | - | chr1_4:56945261-56945280 | None:intergenic | 20.0% |
| !!! | AAAATTGATTTCCAAAAGTT+CGG | - | chr1_4:56945515-56945534 | None:intergenic | 20.0% |
| !!! | ACTTTTGGAAATCAATTTTA+TGG | + | chr1_4:56945516-56945535 | Msa0172040:intron | 20.0% |
| !!! | TTTTTAATCATAGGAATAAC+TGG | - | chr1_4:56945637-56945656 | None:intergenic | 20.0% |
| !! | TGTAATTTATCTTATGAATG+CGG | - | chr1_4:56945821-56945840 | None:intergenic | 20.0% |
| !!! | TTATTTTCTCGATAAAACAT+AGG | - | chr1_4:56945923-56945942 | None:intergenic | 20.0% |
| !!! | TATGTTTTATCGAGAAAATA+AGG | + | chr1_4:56945922-56945941 | Msa0172040:intron | 20.0% |
| !!! | ATGTTTTATCGAGAAAATAA+GGG | + | chr1_4:56945923-56945942 | Msa0172040:intron | 20.0% |
| !! | TTAAAAGTTAAAACACAGAA+TGG | + | chr1_4:56946033-56946052 | Msa0172040:intron | 20.0% |
| !! | CAAACTTAGATAATATTACA+TGG | + | chr1_4:56946205-56946224 | Msa0172040:intron | 20.0% |
| !! | TGGAAATAAATGATATGTAA+GGG | + | chr1_4:56946297-56946316 | Msa0172040:intron | 20.0% |
| !! | GGGAAATAAAACTTATTAAA+TGG | + | chr1_4:56946317-56946336 | Msa0172040:intron | 20.0% |
| !!! | TATTTTTTTAAAATGGTTGC+AGG | + | chr1_4:56946502-56946521 | Msa0172040:intron | 20.0% |
| ! | AGTGTTCAATAAACAGAAAA+CGG | - | chr1_4:56943273-56943292 | None:intergenic | 25.0% |
| !! | TTGAATGTGATATTGGTTAT+TGG | - | chr1_4:56943302-56943321 | None:intergenic | 25.0% |
| ! | TCAAATCCATAATAATCCAA+TGG | - | chr1_4:56943407-56943426 | None:intergenic | 25.0% |
| !! | ATTTAACAACATTGATTACC+TGG | + | chr1_4:56943805-56943824 | Msa0172040:intron | 25.0% |
| !!! | ATGTATATGTTATTTCGGTT+TGG | + | chr1_4:56943932-56943951 | Msa0172040:intron | 25.0% |
| !!! | AGAAAAAAGGTATTGTATGT+TGG | + | chr1_4:56944074-56944093 | Msa0172040:intron | 25.0% |
| !! | TGAAAAAAGTAAGGTTTTTC+TGG | - | chr1_4:56944171-56944190 | None:intergenic | 25.0% |
| ! | CAGGATTTATGAAAAAAGTA+AGG | - | chr1_4:56944180-56944199 | None:intergenic | 25.0% |
| ! | CTATCTAAATTCACTATTTC+AGG | - | chr1_4:56944199-56944218 | None:intergenic | 25.0% |
| !! | ATCTAAAGTAGTAGCAAAAT+TGG | - | chr1_4:56944298-56944317 | None:intergenic | 25.0% |
| ! | TCTCTTTCTGTAAATAGTTT+CGG | + | chr1_4:56944417-56944436 | Msa0172040:intron | 25.0% |
| ! | TAGAGCTTCACTATTATATT+TGG | - | chr1_4:56944544-56944563 | None:intergenic | 25.0% |
| !! | AAATTGCTTCACCTATTTTA+TGG | + | chr1_4:56944661-56944680 | Msa0172040:intron | 25.0% |
| !!! | ATGATTTGAGATAAGTTGAT+TGG | - | chr1_4:56944728-56944747 | None:intergenic | 25.0% |
| ! | TCAACTTATCTCAAATCATA+TGG | + | chr1_4:56944729-56944748 | Msa0172040:CDS | 25.0% |
| ! | ATTAAATGAAAATGCCTTGA+TGG | - | chr1_4:56944804-56944823 | None:intergenic | 25.0% |
| ! | TAAATGTGGTTAAAAAAGGA+AGG | - | chr1_4:56944861-56944880 | None:intergenic | 25.0% |
| !! | ACTTTTGCTTTATATCAAAG+AGG | - | chr1_4:56945147-56945166 | None:intergenic | 25.0% |
| ! | TCTTTGATATAAAGCAAAAG+TGG | + | chr1_4:56945146-56945165 | Msa0172040:intron | 25.0% |
| ! | AGTTACCAAATTGACTAATT+GGG | - | chr1_4:56945229-56945248 | None:intergenic | 25.0% |
| ! | TAGTTACCAAATTGACTAAT+TGG | - | chr1_4:56945230-56945249 | None:intergenic | 25.0% |
| !!! | TAATGTTTTGAGCAAATTGT+TGG | + | chr1_4:56945566-56945585 | Msa0172040:intron | 25.0% |
| ! | CAGAAAACAAAATGAAAACA+AGG | + | chr1_4:56945996-56946015 | Msa0172040:intron | 25.0% |
| ! | ACTTAGATAATATTACATGG+AGG | + | chr1_4:56946208-56946227 | Msa0172040:intron | 25.0% |
| ! | AAAAACAGTTGAATTAGTAC+TGG | + | chr1_4:56946277-56946296 | Msa0172040:intron | 25.0% |
| ! | CTGGAAATAAATGATATGTA+AGG | + | chr1_4:56946296-56946315 | Msa0172040:intron | 25.0% |
| GAAAGATGAACTGAATTTAC+CGG | - | chr1_4:56943249-56943268 | None:intergenic | 30.0% | |
| !!! | TTTTAGTTTAAGATCGCCAT+TGG | + | chr1_4:56943388-56943407 | Msa0172040:intron | 30.0% |
| TTGCGAATAGTAGAAAATAG+TGG | + | chr1_4:56943649-56943668 | Msa0172040:intron | 30.0% | |
| ATAATAAAGTCGCTGCAAAA+GGG | + | chr1_4:56943884-56943903 | Msa0172040:intron | 30.0% | |
| ATCACAGAAAACTTGAACAA+GGG | - | chr1_4:56943974-56943993 | None:intergenic | 30.0% | |
| AATCACAGAAAACTTGAACA+AGG | - | chr1_4:56943975-56943994 | None:intergenic | 30.0% | |
| ! | TTCTGGAAACAGAAAATCAA+CGG | - | chr1_4:56944154-56944173 | None:intergenic | 30.0% |
| ! | GTGAGATTAAGTTTTCCTAA+TGG | + | chr1_4:56944322-56944341 | Msa0172040:intron | 30.0% |
| ATAGGAATGGAACAAACATT+CGG | - | chr1_4:56944507-56944526 | None:intergenic | 30.0% | |
| AACACTGCAAACCATAAAAT+AGG | - | chr1_4:56944675-56944694 | None:intergenic | 30.0% | |
| ! | TTACCTTCACAAATTGCTTT+TGG | + | chr1_4:56944693-56944712 | Msa0172040:CDS | 30.0% |
| AGTGAAAATTCAGCATTCAA+TGG | + | chr1_4:56944771-56944790 | Msa0172040:CDS | 30.0% | |
| AGGCTAAATGTGGTTAAAAA+AGG | - | chr1_4:56944865-56944884 | None:intergenic | 30.0% | |
| AGAAAGAATACAAAGAACCA+TGG | + | chr1_4:56944908-56944927 | Msa0172040:CDS | 30.0% | |
| GAAAGAATACAAAGAACCAT+GGG | + | chr1_4:56944909-56944928 | Msa0172040:CDS | 30.0% | |
| TTTATATCAAAGAGGATTCC+AGG | - | chr1_4:56945139-56945158 | None:intergenic | 30.0% | |
| GATAGAAAAACTTGATGAGA+AGG | + | chr1_4:56945406-56945425 | Msa0172040:intron | 30.0% | |
| AAACTTGATGAGAAGGAATT+TGG | + | chr1_4:56945413-56945432 | Msa0172040:CDS | 30.0% | |
| AACTTGATGAGAAGGAATTT+GGG | + | chr1_4:56945414-56945433 | Msa0172040:CDS | 30.0% | |
| TTAATCATAGGAATAACTGG+TGG | - | chr1_4:56945634-56945653 | None:intergenic | 30.0% | |
| !!! | GCATCTGGTTTTTTAATCAT+AGG | - | chr1_4:56945646-56945665 | None:intergenic | 30.0% |
| ATTAAAAAACCAGATGCTGA+TGG | + | chr1_4:56945649-56945668 | Msa0172040:CDS | 30.0% | |
| CCAAATATTTGTTCAGGAAA+GGG | - | chr1_4:56945973-56945992 | None:intergenic | 30.0% | |
| TCCAAATATTTGTTCAGGAA+AGG | - | chr1_4:56945974-56945993 | None:intergenic | 30.0% | |
| CTGTATCCAAATATTTGTTC+AGG | - | chr1_4:56945979-56945998 | None:intergenic | 30.0% | |
| ! | TACGACGATTTCTCAATTTT+AGG | - | chr1_4:56946092-56946111 | None:intergenic | 30.0% |
| TAGTCAAAAATAGTGACTTG+TGG | + | chr1_4:56946344-56946363 | Msa0172040:intron | 30.0% | |
| AAATATACAATTCATACCCG+AGG | - | chr1_4:56946531-56946550 | None:intergenic | 30.0% | |
| !!! | AAAAGTTTTGTTCTGCACTT+GGG | + | chr1_4:56946582-56946601 | Msa0172040:CDS | 30.0% |
| ATCACTTAAACAATCAAGTG+CGG | - | chr1_4:56946648-56946667 | None:intergenic | 30.0% | |
| GCGAAAGTTGAATGTGATAT+TGG | - | chr1_4:56943309-56943328 | None:intergenic | 35.0% | |
| AGATCGCCATTGGATTATTA+TGG | + | chr1_4:56943398-56943417 | Msa0172040:exon | 35.0% | |
| AAACAAACCTTTCTTCGTTG+AGG | - | chr1_4:56943447-56943466 | None:intergenic | 35.0% | |
| TACCTCTTAACTTCTACCTT+TGG | - | chr1_4:56943590-56943609 | None:intergenic | 35.0% | |
| TTGTTAAATAGCAGCGCTAT+AGG | - | chr1_4:56943794-56943813 | None:intergenic | 35.0% | |
| GAGTAACAACAAATTAAGCC+AGG | - | chr1_4:56943826-56943845 | None:intergenic | 35.0% | |
| GATAATAAAGTCGCTGCAAA+AGG | + | chr1_4:56943883-56943902 | Msa0172040:intron | 35.0% | |
| TAATAAAGTCGCTGCAAAAG+GGG | + | chr1_4:56943885-56943904 | Msa0172040:intron | 35.0% | |
| ACGATGAAGCATGAGAAAAA+AGG | + | chr1_4:56944061-56944080 | Msa0172040:CDS | 35.0% | |
| !! | GTATTGTATGTTGGTGCTTT+TGG | + | chr1_4:56944083-56944102 | Msa0172040:intron | 35.0% |
| !! | GGTGCTTTTGGTATTGAAAT+TGG | + | chr1_4:56944095-56944114 | Msa0172040:intron | 35.0% |
| !! | GAGGAACATTTTCTAAGAAC+AGG | + | chr1_4:56944357-56944376 | Msa0172040:intron | 35.0% |
| !! | CATTCTCAAGTTGTTTTGCA+CGG | - | chr1_4:56944390-56944409 | None:intergenic | 35.0% |
| ! | GTCACATCTTACTTGTTTCT+TGG | + | chr1_4:56944462-56944481 | Msa0172040:intron | 35.0% |
| ! | CGATAAAGCATTCATAGGAA+TGG | - | chr1_4:56944520-56944539 | None:intergenic | 35.0% |
| ! | TTGGTCGATAAAGCATTCAT+AGG | - | chr1_4:56944525-56944544 | None:intergenic | 35.0% |
| TACTCCTGCTTTAGCAAAAA+GGG | - | chr1_4:56944619-56944638 | None:intergenic | 35.0% | |
| CTCAAATCATATGGTACCAA+AGG | + | chr1_4:56944738-56944757 | Msa0172040:CDS | 35.0% | |
| AAATCATATGGTACCAAAGG+TGG | + | chr1_4:56944741-56944760 | Msa0172040:CDS | 35.0% | |
| AATCATATGGTACCAAAGGT+GGG | + | chr1_4:56944742-56944761 | Msa0172040:CDS | 35.0% | |
| ! | GAAATATTGATTGCTGCTTC+AGG | + | chr1_4:56945046-56945065 | Msa0172040:intron | 35.0% |
| GCAATCCCAATTAGTCAATT+TGG | + | chr1_4:56945221-56945240 | Msa0172040:intron | 35.0% | |
| ! | ATTTTCCACTCGAGTTAGTT+AGG | + | chr1_4:56945312-56945331 | Msa0172040:intron | 35.0% |
| TTTAACCTAACTAACTCGAG+TGG | - | chr1_4:56945320-56945339 | None:intergenic | 35.0% | |
| ACTTGATGAGAAGGAATTTG+GGG | + | chr1_4:56945415-56945434 | Msa0172040:CDS | 35.0% | |
| AGTTCGGTTTAGTTACCAAA+AGG | - | chr1_4:56945499-56945518 | None:intergenic | 35.0% | |
| ! | TGGTAACTAAACCGAACTTT+TGG | + | chr1_4:56945501-56945520 | Msa0172040:intron | 35.0% |
| TTATCTTTACCATCAGCATC+TGG | - | chr1_4:56945661-56945680 | None:intergenic | 35.0% | |
| AAAATGCTTGTGTACAAGAG+TGG | + | chr1_4:56945751-56945770 | Msa0172040:CDS | 35.0% | |
| TGCGGTACTTACATCATAAA+GGG | - | chr1_4:56945803-56945822 | None:intergenic | 35.0% | |
| ATGCGGTACTTACATCATAA+AGG | - | chr1_4:56945804-56945823 | None:intergenic | 35.0% | |
| CCCTTTCCTGAACAAATATT+TGG | + | chr1_4:56945970-56945989 | Msa0172040:intron | 35.0% | |
| GTTAATGCATTGCTTGACTA+TGG | + | chr1_4:56946445-56946464 | Msa0172040:intron | 35.0% | |
| !!! | CAAAAGTTTTGTTCTGCACT+TGG | + | chr1_4:56946581-56946600 | Msa0172040:CDS | 35.0% |
| !!! | AAAGTTTTGTTCTGCACTTG+GGG | + | chr1_4:56946583-56946602 | Msa0172040:CDS | 35.0% |
| TGCCAAAGGTAGAAGTTAAG+AGG | + | chr1_4:56943585-56943604 | Msa0172040:intron | 40.0% | |
| CATATACATTGTGACGTCGA+AGG | - | chr1_4:56943921-56943940 | None:intergenic | 40.0% | |
| TGTAGGAGAATGCGATGAAT+AGG | + | chr1_4:56944038-56944057 | Msa0172040:intron | 40.0% | |
| CTCAATTGCTCATCTCCATT+AGG | - | chr1_4:56944340-56944359 | None:intergenic | 40.0% | |
| CTAATGGAGATGAGCAATTG+AGG | + | chr1_4:56944338-56944357 | Msa0172040:intron | 40.0% | |
| !! | TCTGCTTTTGCAGAGATCTA+AGG | + | chr1_4:56944587-56944606 | Msa0172040:intron | 40.0% |
| CTACTCCTGCTTTAGCAAAA+AGG | - | chr1_4:56944620-56944639 | None:intergenic | 40.0% | |
| GCACCAAAAGCAATTTGTGA+AGG | - | chr1_4:56944699-56944718 | None:intergenic | 40.0% | |
| !! | TCACAAATTGCTTTTGGTGC+TGG | + | chr1_4:56944699-56944718 | Msa0172040:CDS | 40.0% |
| TCAATGGTATGTCTCCATCA+AGG | + | chr1_4:56944787-56944806 | Msa0172040:intron | 40.0% | |
| GCAGCGAGAGTAAATTATTG+TGG | - | chr1_4:56944833-56944852 | None:intergenic | 40.0% | |
| GGTAAAGCATAGGCTAAATG+TGG | - | chr1_4:56944875-56944894 | None:intergenic | 40.0% | |
| TTTAGCCTATGCTTTACCAC+AGG | + | chr1_4:56944877-56944896 | Msa0172040:intron | 40.0% | |
| ACTTGCAGTTACACACACAT+AGG | - | chr1_4:56945000-56945019 | None:intergenic | 40.0% | |
| ATCCAATAGTTCATCCCTTG+AGG | + | chr1_4:56945084-56945103 | Msa0172040:CDS | 40.0% | |
| TTCCTCAAGGGATGAACTAT+TGG | - | chr1_4:56945089-56945108 | None:intergenic | 40.0% | |
| CCTGAATATGGTTTCCTCAA+GGG | - | chr1_4:56945101-56945120 | None:intergenic | 40.0% | |
| AGGATTCCAGGAATTTACCT+GGG | - | chr1_4:56945127-56945146 | None:intergenic | 40.0% | |
| TAATTGGGATTGCTCAACTC+TGG | - | chr1_4:56945214-56945233 | None:intergenic | 40.0% | |
| TGCGCTTTCATCATAAGTTC+TGG | - | chr1_4:56945453-56945472 | None:intergenic | 40.0% | |
| !! | GTTTTGAGCAAATTGTTGGC+AGG | + | chr1_4:56945570-56945589 | Msa0172040:intron | 40.0% |
| ! | ATTTTGCCAATTAAGCCACG+TGG | - | chr1_4:56945736-56945755 | None:intergenic | 40.0% |
| GGTAAAGTTAAGCTGAAGCT+TGG | + | chr1_4:56945772-56945791 | Msa0172040:CDS | 40.0% | |
| AAACTATGTGAGATGCCTAG+AGG | + | chr1_4:56946124-56946143 | Msa0172040:intron | 40.0% | |
| ! | AGTGACTTGTGGTCAAATGA+TGG | + | chr1_4:56946355-56946374 | Msa0172040:intron | 40.0% |
| ! | TGATGGATGATGCAATAGAG+AGG | + | chr1_4:56946372-56946391 | Msa0172040:intron | 40.0% |
| ATGCAATAGAGAGGTGGAAT+GGG | + | chr1_4:56946381-56946400 | Msa0172040:intron | 40.0% | |
| AAAATGGTTGCAGGTTTCCT+CGG | + | chr1_4:56946511-56946530 | Msa0172040:intron | 40.0% | |
| ATCGGAAAAGGAGGGATTAC+AGG | - | chr1_4:56943210-56943229 | None:intergenic | 45.0% | |
| GTGTGATGATCGGAAAAGGA+GGG | - | chr1_4:56943218-56943237 | None:intergenic | 45.0% | |
| ! | CTCCTTTTCCGATCATCACA+CGG | + | chr1_4:56943217-56943236 | Msa0172040:five_prime_UTR | 45.0% |
| AAAGCCTCCTCAACGAAGAA+AGG | + | chr1_4:56943437-56943456 | Msa0172040:CDS | 45.0% | |
| CAAACCTTTCTTCGTTGAGG+AGG | - | chr1_4:56943444-56943463 | None:intergenic | 45.0% | |
| ACTTCTACCTTTGGCACTCT+AGG | - | chr1_4:56943581-56943600 | None:intergenic | 45.0% | |
| TTCAAATTCCGCTACACTGC+AGG | + | chr1_4:56943768-56943787 | Msa0172040:intron | 45.0% | |
| TTTCTGCAGCGAAGTTGTTG+AGG | + | chr1_4:56943858-56943877 | Msa0172040:intron | 45.0% | |
| ! | GATGCCCTTTTTGCTAAAGC+AGG | + | chr1_4:56944612-56944631 | Msa0172040:intron | 45.0% |
| !!! | CAAATTGCTTTTGGTGCTGG+AGG | + | chr1_4:56944702-56944721 | Msa0172040:CDS | 45.0% |
| TCACTCTGTACACTTACCCA+TGG | - | chr1_4:56944928-56944947 | None:intergenic | 45.0% | |
| CCCTTGAGGAAACCATATTC+AGG | + | chr1_4:56945098-56945117 | Msa0172040:CDS | 45.0% | |
| GCCTGAATATGGTTTCCTCA+AGG | - | chr1_4:56945102-56945121 | None:intergenic | 45.0% | |
| AAACCATATTCAGGCAACCC+AGG | + | chr1_4:56945107-56945126 | Msa0172040:CDS | 45.0% | |
| TTACCTGGGTTGCCTGAATA+TGG | - | chr1_4:56945113-56945132 | None:intergenic | 45.0% | |
| GAGGATTCCAGGAATTTACC+TGG | - | chr1_4:56945128-56945147 | None:intergenic | 45.0% | |
| TGATGAGAAGGAATTTGGGG+AGG | + | chr1_4:56945418-56945437 | Msa0172040:CDS | 45.0% | |
| TTGAGCAAATTGTTGGCAGG+AGG | + | chr1_4:56945573-56945592 | Msa0172040:intron | 45.0% | |
| CTCTAGACATCTAAGCCTCT+AGG | - | chr1_4:56946142-56946161 | None:intergenic | 45.0% | |
| TGGATGATGCAATAGAGAGG+TGG | + | chr1_4:56946375-56946394 | Msa0172040:intron | 45.0% | |
| GATGCAATAGAGAGGTGGAA+TGG | + | chr1_4:56946380-56946399 | Msa0172040:intron | 45.0% | |
| TGCAATAGAGAGGTGGAATG+GGG | + | chr1_4:56946382-56946401 | Msa0172040:intron | 45.0% | |
| AAATGGTTGCAGGTTTCCTC+GGG | + | chr1_4:56946512-56946531 | Msa0172040:intron | 45.0% | |
| !! | CAAGTTTGCTACTGTAACCC+CGG | + | chr1_4:56946613-56946632 | Msa0172040:CDS | 45.0% |
| !!! | TATATTTATTATATTTTTGT+AGG | + | chr1_4:56944021-56944040 | Msa0172040:intron | 5.0% |
| !!! | TTTTTGTTATTTTTTTAAAA+TGG | + | chr1_4:56946495-56946514 | Msa0172040:intron | 5.0% |
| !! | CGTTGGAGAGGAGGTTTTGA+CGG | - | chr1_4:56943179-56943198 | None:intergenic | 50.0% |
| GATTACAGGCGGAAAGACGT+TGG | - | chr1_4:56943196-56943215 | None:intergenic | 50.0% | |
| GGAAAAGGAGGGATTACAGG+CGG | - | chr1_4:56943207-56943226 | None:intergenic | 50.0% | |
| CGTGTGATGATCGGAAAAGG+AGG | - | chr1_4:56943219-56943238 | None:intergenic | 50.0% | |
| CACCGTGTGATGATCGGAAA+AGG | - | chr1_4:56943222-56943241 | None:intergenic | 50.0% | |
| ! | CTTTTCCGATCATCACACGG+TGG | + | chr1_4:56943220-56943239 | Msa0172040:five_prime_UTR | 50.0% |
| GGAAACCACCGTGTGATGAT+CGG | - | chr1_4:56943228-56943247 | None:intergenic | 50.0% | |
| GATCATCACACGGTGGTTTC+CGG | + | chr1_4:56943227-56943246 | Msa0172040:five_prime_UTR | 50.0% | |
| ! | ACTCTAGGAGGTGGAGCTTT+AGG | - | chr1_4:56943566-56943585 | None:intergenic | 50.0% |
| TCTACCTTTGGCACTCTAGG+AGG | - | chr1_4:56943578-56943597 | None:intergenic | 50.0% | |
| TTCACTCTTGCTCCCACCTT+TGG | - | chr1_4:56944757-56944776 | None:intergenic | 50.0% | |
| TCACGCCTGTGGTAAAGCAT+AGG | - | chr1_4:56944885-56944904 | None:intergenic | 50.0% | |
| TTCTTTCTCAGTCACGCCTG+TGG | - | chr1_4:56944896-56944915 | None:intergenic | 50.0% | |
| AGGCAACCCAGGTAAATTCC+TGG | + | chr1_4:56945118-56945137 | Msa0172040:intron | 50.0% | |
| ! | AGCAGTGGAGCTTGACCTTT+TGG | + | chr1_4:56945481-56945500 | Msa0172040:CDS | 50.0% |
| TGAAGAACGCACTTGCCTCT+GGG | - | chr1_4:56945603-56945622 | None:intergenic | 50.0% | |
| ATGAAGAACGCACTTGCCTC+TGG | - | chr1_4:56945604-56945623 | None:intergenic | 50.0% | |
| GATGGTAAAGATAAGCGCCC+TGG | + | chr1_4:56945667-56945686 | Msa0172040:CDS | 50.0% | |
| AAGTTGAACGACTTGCCACG+TGG | + | chr1_4:56945718-56945737 | Msa0172040:CDS | 50.0% | |
| GACTTGCCACGTGGCTTAAT+TGG | + | chr1_4:56945727-56945746 | Msa0172040:CDS | 50.0% | |
| ATAGAGAGGTGGAATGGGGT+AGG | + | chr1_4:56946386-56946405 | Msa0172040:intron | 50.0% | |
| TCAAGTGCGGCATCTATGTC+CGG | - | chr1_4:56946635-56946654 | None:intergenic | 50.0% | |
| ! | TTTTGACGGAGGCTTGACGC+AGG | - | chr1_4:56943165-56943184 | None:intergenic | 55.0% |
| !! | TGGAGAGGAGGTTTTGACGG+AGG | - | chr1_4:56943176-56943195 | None:intergenic | 55.0% |
| ! | TCCACCTCCTAGAGTGCCAA+AGG | + | chr1_4:56943571-56943590 | Msa0172040:intron | 55.0% |
| ! | ACCTTTGGCACTCTAGGAGG+TGG | - | chr1_4:56943575-56943594 | None:intergenic | 55.0% |
| GCTATAGGCCTGCAGTGTAG+CGG | - | chr1_4:56943779-56943798 | None:intergenic | 55.0% | |
| CTGCAGCGAAGTTGTTGAGG+AGG | + | chr1_4:56943861-56943880 | Msa0172040:intron | 55.0% | |
| AGTCGCTGCAAAAGGGGTTC+AGG | + | chr1_4:56943891-56943910 | Msa0172040:intron | 55.0% | |
| AAGCGCAGCAAGTTCAGCAG+TGG | + | chr1_4:56945466-56945485 | Msa0172040:CDS | 55.0% | |
| TTGGCAGGAGGAAAACCCAG+AGG | + | chr1_4:56945585-56945604 | Msa0172040:intron | 55.0% | |
| GGTAAAGATAAGCGCCCTGG+AGG | + | chr1_4:56945670-56945689 | Msa0172040:CDS | 55.0% | |
| AAGCGCCCTGGAGGTTATAG+AGG | + | chr1_4:56945679-56945698 | Msa0172040:CDS | 55.0% | |
| CCGCACCTCTATAACCTCCA+GGG | - | chr1_4:56945687-56945706 | None:intergenic | 55.0% | |
| CCCTGGAGGTTATAGAGGTG+CGG | + | chr1_4:56945684-56945703 | Msa0172040:CDS | 55.0% | |
| GGGGTAGGCTAGGCTATTCA+TGG | + | chr1_4:56946401-56946420 | Msa0172040:intron | 55.0% | |
| AAGTGCGGCATCTATGTCCG+GGG | - | chr1_4:56946633-56946652 | None:intergenic | 55.0% | |
| CAAGTGCGGCATCTATGTCC+GGG | - | chr1_4:56946634-56946653 | None:intergenic | 55.0% | |
| GCGGAAAGACGTTGGAGAGG+AGG | - | chr1_4:56943188-56943207 | None:intergenic | 60.0% | |
| CAGGCGGAAAGACGTTGGAG+AGG | - | chr1_4:56943191-56943210 | None:intergenic | 60.0% | |
| GCCGCACCTCTATAACCTCC+AGG | - | chr1_4:56945688-56945707 | None:intergenic | 60.0% | |
| GAGGTGGAATGGGGTAGGCT+AGG | + | chr1_4:56946391-56946410 | Msa0172040:intron | 60.0% | |
| CGGAGGCTTGACGCAGGAGA+CGG | - | chr1_4:56943159-56943178 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 56943145 | 56946853 | 56943145 | ID=Msa0172040;Name=Msa0172040 |
| chr1_4 | mRNA | 56943145 | 56946853 | 56943145 | ID=Msa0172040-mRNA-1;Parent=Msa0172040;Name=Msa0172040-mRNA-1;_AED=0.17;_eAED=0.17;_QI=127|0.87|1|1|0.87|0.77|9|174|247 |
| chr1_4 | exon | 56943145 | 56943248 | 56943145 | ID=Msa0172040-mRNA-1:exon:17309;Parent=Msa0172040-mRNA-1 |
| chr1_4 | exon | 56943394 | 56943458 | 56943394 | ID=Msa0172040-mRNA-1:exon:17310;Parent=Msa0172040-mRNA-1 |
| chr1_4 | exon | 56944043 | 56944082 | 56944043 | ID=Msa0172040-mRNA-1:exon:17311;Parent=Msa0172040-mRNA-1 |
| chr1_4 | exon | 56944691 | 56944792 | 56944691 | ID=Msa0172040-mRNA-1:exon:17312;Parent=Msa0172040-mRNA-1 |
| chr1_4 | exon | 56944899 | 56944930 | 56944899 | ID=Msa0172040-mRNA-1:exon:17313;Parent=Msa0172040-mRNA-1 |
| chr1_4 | exon | 56945068 | 56945128 | 56945068 | ID=Msa0172040-mRNA-1:exon:17314;Parent=Msa0172040-mRNA-1 |
| chr1_4 | exon | 56945411 | 56945502 | 56945411 | ID=Msa0172040-mRNA-1:exon:17315;Parent=Msa0172040-mRNA-1 |
| chr1_4 | exon | 56945592 | 56945810 | 56945592 | ID=Msa0172040-mRNA-1:exon:17316;Parent=Msa0172040-mRNA-1 |
| chr1_4 | exon | 56946524 | 56946853 | 56946524 | ID=Msa0172040-mRNA-1:exon:17317;Parent=Msa0172040-mRNA-1 |
| chr1_4 | five_prime_UTR | 56943145 | 56943248 | 56943145 | ID=Msa0172040-mRNA-1:five_prime_utr;Parent=Msa0172040-mRNA-1 |
| chr1_4 | five_prime_UTR | 56943394 | 56943416 | 56943394 | ID=Msa0172040-mRNA-1:five_prime_utr;Parent=Msa0172040-mRNA-1 |
| chr1_4 | CDS | 56943417 | 56943458 | 56943417 | ID=Msa0172040-mRNA-1:cds;Parent=Msa0172040-mRNA-1 |
| chr1_4 | CDS | 56944043 | 56944082 | 56944043 | ID=Msa0172040-mRNA-1:cds;Parent=Msa0172040-mRNA-1 |
| chr1_4 | CDS | 56944691 | 56944792 | 56944691 | ID=Msa0172040-mRNA-1:cds;Parent=Msa0172040-mRNA-1 |
| chr1_4 | CDS | 56944899 | 56944930 | 56944899 | ID=Msa0172040-mRNA-1:cds;Parent=Msa0172040-mRNA-1 |
| chr1_4 | CDS | 56945068 | 56945128 | 56945068 | ID=Msa0172040-mRNA-1:cds;Parent=Msa0172040-mRNA-1 |
| chr1_4 | CDS | 56945411 | 56945502 | 56945411 | ID=Msa0172040-mRNA-1:cds;Parent=Msa0172040-mRNA-1 |
| chr1_4 | CDS | 56945592 | 56945810 | 56945592 | ID=Msa0172040-mRNA-1:cds;Parent=Msa0172040-mRNA-1 |
| chr1_4 | CDS | 56946524 | 56946679 | 56946524 | ID=Msa0172040-mRNA-1:cds;Parent=Msa0172040-mRNA-1 |
| chr1_4 | three_prime_UTR | 56946680 | 56946853 | 56946680 | ID=Msa0172040-mRNA-1:three_prime_utr;Parent=Msa0172040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
