Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455330 | XP_013457080.1 | 96.774 | 310 | 10 | 0 | 1 | 310 | 1 | 310 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455330 | sp|P34913|HYES_HUMAN | 31.875 | 320 | 192 | 10 | 2 | 307 | 235 | 542 | 2.45e-43 | 159 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455330 | A0A072UNZ9 | 96.774 | 310 | 10 | 0 | 1 | 310 | 1 | 310 | 0.0 | 612 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034590 | Msa1455330 | -0.820931 | 5.283730e-53 | -8.615850e-47 |
| Msa0037110 | Msa1455330 | -0.809686 | 1.673752e-50 | -8.615850e-47 |
| Msa0084330 | Msa1455330 | -0.802976 | 4.345349e-49 | -8.615850e-47 |
| Msa1378020 | Msa1455330 | 0.819521 | 1.111725e-52 | -8.615850e-47 |
| Msa1395200 | Msa1455330 | -0.800489 | 1.407434e-48 | -8.615850e-47 |
| Msa1402340 | Msa1455330 | -0.802418 | 5.662794e-49 | -8.615850e-47 |
| Msa1408320 | Msa1455330 | 0.817880 | 2.621232e-52 | -8.615850e-47 |
| Msa0606230 | Msa1455330 | -0.813247 | 2.819670e-51 | -8.615850e-47 |
| Msa0612920 | Msa1455330 | 0.968403 | 1.257224e-128 | -8.615850e-47 |
| Msa0618020 | Msa1455330 | -0.802402 | 5.706948e-49 | -8.615850e-47 |
| Msa0652270 | Msa1455330 | -0.812276 | 4.599116e-51 | -8.615850e-47 |
| Msa0653540 | Msa1455330 | 0.996428 | 2.139676e-227 | -8.615850e-47 |
| Msa0694810 | Msa1455330 | -0.802207 | 6.258471e-49 | -8.615850e-47 |
| Msa0701040 | Msa1455330 | -0.806055 | 9.905086e-50 | -8.615850e-47 |
| Msa0769400 | Msa1455330 | 0.801675 | 8.050107e-49 | -8.615850e-47 |
| Msa0129820 | Msa1455330 | -0.802008 | 6.878149e-49 | -8.615850e-47 |
| Msa0172040 | Msa1455330 | 0.802386 | 5.750640e-49 | -8.615850e-47 |
| Msa1264300 | Msa1455330 | -0.810820 | 9.530097e-51 | -8.615850e-47 |
| Msa1334350 | Msa1455330 | -0.803178 | 3.945384e-49 | -8.615850e-47 |
| Msa1335090 | Msa1455330 | 0.826012 | 3.426258e-54 | -8.615850e-47 |
| Msa0417060 | Msa1455330 | 0.821776 | 3.373656e-53 | -8.615850e-47 |
| Msa0982220 | Msa1455330 | -0.823227 | 1.551499e-53 | -8.615850e-47 |
| Msa0985980 | Msa1455330 | -0.811521 | 6.714932e-51 | -8.615850e-47 |
| Msa1044520 | Msa1455330 | -0.801377 | 9.265255e-49 | -8.615850e-47 |
| Msa1137980 | Msa1455330 | 0.810075 | 1.380644e-50 | -8.615850e-47 |
| Msa0556690 | Msa1455330 | -0.803072 | 4.150543e-49 | -8.615850e-47 |
| Msa0940400 | Msa1455330 | -0.806124 | 9.581048e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455330 | MtrunA17_Chr4g0047701 | 96.774 | 310 | 10 | 0 | 1 | 310 | 1 | 310 | 0.0 | 612 |
| Msa1455330 | MtrunA17_Chr4g0047681 | 87.742 | 310 | 38 | 0 | 1 | 310 | 1 | 310 | 0.0 | 556 |
| Msa1455330 | MtrunA17_Chr2g0324141 | 62.701 | 311 | 115 | 1 | 1 | 310 | 1 | 311 | 8.51e-148 | 417 |
| Msa1455330 | MtrunA17_Chr2g0324161 | 60.772 | 311 | 121 | 1 | 1 | 310 | 1 | 311 | 8.53e-144 | 407 |
| Msa1455330 | MtrunA17_Chr8g0372491 | 37.736 | 318 | 185 | 6 | 1 | 309 | 3 | 316 | 5.68e-72 | 225 |
| Msa1455330 | MtrunA17_Chr7g0272451 | 36.875 | 320 | 186 | 7 | 1 | 309 | 1 | 315 | 1.70e-67 | 213 |
| Msa1455330 | MtrunA17_Chr7g0272481 | 37.072 | 321 | 187 | 6 | 1 | 309 | 1 | 318 | 7.01e-67 | 212 |
| Msa1455330 | MtrunA17_Chr7g0272441 | 36.137 | 321 | 190 | 6 | 1 | 309 | 1 | 318 | 1.31e-66 | 211 |
| Msa1455330 | MtrunA17_Chr7g0272501 | 37.072 | 321 | 187 | 6 | 1 | 309 | 1 | 318 | 5.57e-66 | 209 |
| Msa1455330 | MtrunA17_Chr7g0272431 | 36.137 | 321 | 190 | 6 | 1 | 309 | 1 | 318 | 7.86e-66 | 209 |
| Msa1455330 | MtrunA17_Chr7g0272181 | 37.072 | 321 | 187 | 6 | 1 | 309 | 1 | 318 | 8.39e-66 | 209 |
| Msa1455330 | MtrunA17_Chr7g0269471 | 35.202 | 321 | 191 | 7 | 1 | 309 | 1 | 316 | 1.31e-64 | 206 |
| Msa1455330 | MtrunA17_Chr7g0272171 | 36.449 | 321 | 189 | 6 | 1 | 309 | 1 | 318 | 1.56e-64 | 206 |
| Msa1455330 | MtrunA17_Chr7g0272531 | 36.760 | 321 | 188 | 6 | 1 | 309 | 31 | 348 | 3.91e-64 | 206 |
| Msa1455330 | MtrunA17_Chr4g0000111 | 34.462 | 325 | 193 | 7 | 1 | 309 | 1 | 321 | 8.03e-62 | 199 |
| Msa1455330 | MtrunA17_Chr4g0067581 | 34.472 | 322 | 194 | 8 | 1 | 309 | 37 | 354 | 1.50e-59 | 194 |
| Msa1455330 | MtrunA17_Chr1g0192291 | 38.994 | 159 | 88 | 2 | 1 | 151 | 1 | 158 | 1.01e-39 | 137 |
| Msa1455330 | MtrunA17_Chr7g0272471 | 39.103 | 156 | 90 | 1 | 1 | 151 | 1 | 156 | 1.25e-39 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1455330 | AT3G51000.1 | 38.245 | 319 | 179 | 8 | 4 | 309 | 5 | 318 | 1.25e-69 | 219 |
| Msa1455330 | AT4G02340.1 | 35.625 | 320 | 190 | 8 | 1 | 309 | 1 | 315 | 7.43e-67 | 212 |
| Msa1455330 | AT3G05600.1 | 34.769 | 325 | 194 | 8 | 1 | 309 | 1 | 323 | 3.48e-58 | 190 |
| Msa1455330 | AT2G26740.1 | 34.675 | 323 | 191 | 9 | 4 | 309 | 1 | 320 | 8.69e-56 | 184 |
| Msa1455330 | AT4G15960.1 | 32.110 | 327 | 200 | 10 | 1 | 309 | 51 | 373 | 1.56e-53 | 179 |
| Msa1455330 | AT2G26750.1 | 32.188 | 320 | 200 | 8 | 4 | 308 | 1 | 318 | 7.69e-51 | 171 |
| Msa1455330 | AT4G15955.3 | 31.034 | 319 | 173 | 9 | 5 | 303 | 6 | 297 | 2.35e-48 | 164 |
| Msa1455330 | AT3G05600.2 | 37.037 | 243 | 140 | 6 | 1 | 232 | 1 | 241 | 6.62e-48 | 161 |
| Msa1455330 | AT4G15955.2 | 38.150 | 173 | 92 | 4 | 5 | 162 | 6 | 178 | 3.19e-37 | 131 |
| Msa1455330 | AT4G15955.1 | 38.182 | 165 | 87 | 4 | 5 | 154 | 6 | 170 | 2.12e-34 | 124 |
Find 118 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCTTGTTGGAAAAGATTT+TGG | 0.176449 | tig0035711:+9152 | Msa1455330:CDS |
| CAAAGAGCTTGTTCCCAATT+TGG | 0.185506 | tig0035711:+9917 | Msa1455330:CDS |
| GGAAGAGCAGAGGCTGATTT+TGG | 0.200412 | tig0035711:+9404 | Msa1455330:CDS |
| ATAACTCCTAACACCCTTTC+TGG | 0.215902 | tig0035711:-9209 | Msa1455330:intergenic |
| AATAAATGTAACCTCCAAAT+TGG | 0.220324 | tig0035711:-9931 | Msa1455330:intergenic |
| CTCAAAATGTAGAAGCCTTC+TGG | 0.243501 | tig0035711:-9287 | Msa1455330:intergenic |
| GAGGATGATCTTTCAACTTA+TGG | 0.263184 | tig0035711:+9560 | Msa1455330:CDS |
| AGTTCCAACACTGCTGATAA+TGG | 0.288259 | tig0035711:+9833 | Msa1455330:CDS |
| TGATGCTCTTGCTATTTCTA+AGG | 0.307622 | tig0035711:+8299 | Msa1455330:CDS |
| ATAAGCTGATTCACCTGTTC+AGG | 0.319063 | tig0035711:-9987 | Msa1455330:intergenic |
| CAAATTGGGAACAAGCTCTT+TGG | 0.323505 | tig0035711:-9916 | Msa1455330:intergenic |
| GATTATGTTTACAAGTTTCC+AGG | 0.357852 | tig0035711:+9864 | Msa1455330:CDS |
| AAATCAGCCTCTGCTCTTCC+CGG | 0.368451 | tig0035711:-9401 | Msa1455330:intergenic |
| CAAGAGGGAAGAGGGGTATC+AGG | 0.369676 | tig0035711:-9530 | Msa1455330:intergenic |
| TGGATTCCGAACCGCATTGC+AGG | 0.372430 | tig0035711:+9601 | Msa1455330:CDS |
| CCACTAAATCCATGATCTCT+TGG | 0.374190 | tig0035711:-9505 | Msa1455330:intergenic |
| GACGAAACTTCAAATGTGTT+TGG | 0.378024 | tig0035711:-10024 | Msa1455330:intergenic |
| CTGATACCCCTCTTCCCTCT+TGG | 0.378746 | tig0035711:+9531 | Msa1455330:CDS |
| GGAGCCTTGTATGAGAAATC+TGG | 0.381671 | tig0035711:+9581 | Msa1455330:CDS |
| TTCACGGTTTCCCGGAGATA+TGG | 0.385602 | tig0035711:+8127 | Msa1455330:CDS |
| TCAAGAACAATTTCCTGAAC+AGG | 0.386873 | tig0035711:+9974 | Msa1455330:CDS |
| CCAAGAGATCATGGATTTAG+TGG | 0.389288 | tig0035711:+9505 | Msa1455330:CDS |
| TCAAAATGTAGAAGCCTTCT+GGG | 0.389772 | tig0035711:-9286 | Msa1455330:intergenic |
| AATCTTTAACATATGGCAAT+AGG | 0.394043 | tig0035711:-10303 | Msa1455330:intergenic |
| AGTATTCCTTCACGGTTTCC+CGG | 0.404239 | tig0035711:+8119 | Msa1455330:CDS |
| GTAATTCACTTCTTGAGAAA+AGG | 0.410122 | tig0035711:-9466 | Msa1455330:intergenic |
| GAGGGGCCTGGTGGAACATA+TGG | 0.413007 | tig0035711:-9245 | Msa1455330:intergenic |
| GTGAGGAAATCTTTAACATA+TGG | 0.419594 | tig0035711:-10310 | Msa1455330:intergenic |
| CTACACCCAGAAAGGGTGTT+AGG | 0.423793 | tig0035711:+9203 | Msa1455330:CDS |
| TGAAGGAATACTACGACGTT+TGG | 0.425614 | tig0035711:-8108 | Msa1455330:intergenic |
| CCAGCCGCTTCAAATTGTTT+CGG | 0.427383 | tig0035711:-10088 | Msa1455330:intergenic |
| AGTCCATAGCCTCTGTAATC+AGG | 0.428002 | tig0035711:-8207 | Msa1455330:intergenic |
| TTTAATAAATCTTCAATCCC+TGG | 0.429288 | tig0035711:-9882 | Msa1455330:intergenic |
| CTACATTAACGAACTTGTGT+TGG | 0.429586 | tig0035711:-7969 | Msa1455330:intergenic |
| CCGAAACAATTTGAAGCGGC+TGG | 0.431666 | tig0035711:+10088 | Msa1455330:three_prime_UTR |
| CATGAATGATCTGTGTTGTT+TGG | 0.431773 | tig0035711:+10046 | Msa1455330:three_prime_UTR |
| GTTCCAACACTGCTGATAAT+GGG | 0.431775 | tig0035711:+9834 | Msa1455330:CDS |
| ATCCGACCAGCCTCCTGAAC+CGG | 0.433671 | tig0035711:+8230 | Msa1455330:CDS |
| GAAACACATTCATTCATTCA+TGG | 0.434731 | tig0035711:+7939 | Msa1455330:exon |
| GCAATAGGATACCATGGTCT+TGG | 0.434823 | tig0035711:-10288 | Msa1455330:intergenic |
| ATATCCTAGGTGTTTCTTGT+TGG | 0.435389 | tig0035711:+9140 | Msa1455330:intron |
| CGCCAGGAGTACCATATCTC+CGG | 0.439235 | tig0035711:-8138 | Msa1455330:intergenic |
| CACCCTTTCTGGGTGTAGAA+TGG | 0.444293 | tig0035711:-9198 | Msa1455330:intergenic |
| ATAAATGTAACCTCCAAATT+GGG | 0.450227 | tig0035711:-9930 | Msa1455330:intergenic |
| AGGAGCAATCGCTCTGAAAC+CGG | 0.453318 | tig0035711:-8187 | Msa1455330:intergenic |
| CCGCATTGCAGGTCCCATAT+AGG | 0.456313 | tig0035711:+9612 | Msa1455330:CDS |
| TAACTCCTAACACCCTTTCT+GGG | 0.457305 | tig0035711:-9208 | Msa1455330:intergenic |
| ACTGCTGATAATGGGTGAAA+AGG | 0.458986 | tig0035711:+9842 | Msa1455330:CDS |
| TTTCAAAGACGAAATGGTAA+AGG | 0.461336 | tig0035711:+10261 | Msa1455330:three_prime_UTR |
| TGAACAAAATGAGTTCCCTC+TGG | 0.477392 | tig0035711:-9954 | Msa1455330:intergenic |
| AAACTCCACATAGCAGAGAT+TGG | 0.477759 | tig0035711:+8000 | Msa1455330:CDS |
| TTTCCATTCTACACCCAGAA+AGG | 0.479717 | tig0035711:+9195 | Msa1455330:CDS |
| TCACCCATTATCAGCAGTGT+TGG | 0.480037 | tig0035711:-9837 | Msa1455330:intergenic |
| TCCCGGAGATATGGTACTCC+TGG | 0.481360 | tig0035711:+8136 | Msa1455330:CDS |
| GGAACTTTGACTACAGGATC+TGG | 0.481430 | tig0035711:-9816 | Msa1455330:intergenic |
| AGCTATCATCTGGTGGCGCC+AGG | 0.481656 | tig0035711:-8154 | Msa1455330:intergenic |
| GTGTTAGGAGTTATCACATT+GGG | 0.484938 | tig0035711:+9218 | Msa1455330:CDS |
| ATGGGACCTGCAATGCGGTT+CGG | 0.491999 | tig0035711:-9607 | Msa1455330:intergenic |
| AACGTCGTAGTATTCCTTCA+CGG | 0.495365 | tig0035711:+8111 | Msa1455330:CDS |
| AGTGTTGGAACTTTGACTAC+AGG | 0.496106 | tig0035711:-9822 | Msa1455330:intergenic |
| TTCCATTCTACACCCAGAAA+GGG | 0.501713 | tig0035711:+9196 | Msa1455330:CDS |
| CACATAGCAGAGATTGGAAC+CGG | 0.504689 | tig0035711:+8006 | Msa1455330:CDS |
| CACCTGCGAGAGCTATCATC+TGG | 0.513061 | tig0035711:-8164 | Msa1455330:intergenic |
| TAATGAAAACCAAGAGATCA+TGG | 0.518871 | tig0035711:+9496 | Msa1455330:CDS |
| AGAATGGAAAACAGATATGC+AGG | 0.524659 | tig0035711:-9182 | Msa1455330:intergenic |
| AAGCAAGAGAAACCTGGGCT+TGG | 0.524757 | tig0035711:+7878 | Msa1455330:five_prime_UTR |
| CAGTAAACCAAGAGGGAAGA+GGG | 0.529202 | tig0035711:-9538 | Msa1455330:intergenic |
| GCTCCTGATTACAGAGGCTA+TGG | 0.529248 | tig0035711:+8204 | Msa1455330:CDS |
| ATGATAGCTCTCGCAGGTGC+CGG | 0.530439 | tig0035711:+8168 | Msa1455330:CDS |
| AAGTATTTATGTAGCATAGA+GGG | 0.532404 | tig0035711:-9263 | Msa1455330:intergenic |
| GTAATAAAGCAAGAGAAACC+TGG | 0.537351 | tig0035711:+7872 | Msa1455330:five_prime_UTR |
| GAGCATCAAGAATCGCTAGA+AGG | 0.538056 | tig0035711:-8284 | Msa1455330:intergenic |
| GCCAGGAGTACCATATCTCC+GGG | 0.548729 | tig0035711:-8137 | Msa1455330:intergenic |
| CACCAGATGATAGCTCTCGC+AGG | 0.549609 | tig0035711:+8162 | Msa1455330:CDS |
| GAATCCAGATTTCTCATACA+AGG | 0.550335 | tig0035711:-9585 | Msa1455330:intergenic |
| CGGTTCCAATCTCTGCTATG+TGG | 0.550408 | tig0035711:-8005 | Msa1455330:intergenic |
| CAACACAAGTTCGTTAATGT+AGG | 0.552854 | tig0035711:+7970 | Msa1455330:CDS |
| ATTATGTTTACAAGTTTCCA+GGG | 0.552945 | tig0035711:+9865 | Msa1455330:CDS |
| AACACTGACATGCCAAGCCC+AGG | 0.556508 | tig0035711:-7890 | Msa1455330:intergenic |
| TCAGTAAACCAAGAGGGAAG+AGG | 0.558091 | tig0035711:-9539 | Msa1455330:intergenic |
| AACTTCAAATGTGTTTGGCT+AGG | 0.559632 | tig0035711:-10019 | Msa1455330:intergenic |
| GAAGTATTTATGTAGCATAG+AGG | 0.563430 | tig0035711:-9264 | Msa1455330:intergenic |
| TTATGTAGCATAGAGGGGCC+TGG | 0.565454 | tig0035711:-9257 | Msa1455330:intergenic |
| TCTTCCCTCTTGGTTTACTG+AGG | 0.566880 | tig0035711:+9541 | Msa1455330:CDS |
| TGTGTTGTTTGGCAAGTGTG+TGG | 0.567195 | tig0035711:+10057 | Msa1455330:three_prime_UTR |
| TTCCGGTTCAGGAGGCTGGT+CGG | 0.569863 | tig0035711:-8232 | Msa1455330:intergenic |
| AGAGCTTGTTCCCAATTTGG+AGG | 0.570200 | tig0035711:+9920 | Msa1455330:CDS |
| TTCTAGTTATGATTGAAACA+TGG | 0.573811 | tig0035711:+10172 | Msa1455330:three_prime_UTR |
| GCGGCTGGAATTTCTTGCGA+AGG | 0.575091 | tig0035711:+10103 | Msa1455330:three_prime_UTR |
| TGTGTTTGGCTAGGAAAGCA+AGG | 0.576133 | tig0035711:-10010 | Msa1455330:intergenic |
| GGAGTTCCATATGTTCCACC+AGG | 0.591585 | tig0035711:+9239 | Msa1455330:CDS |
| TAATAAAGCAAGAGAAACCT+GGG | 0.595027 | tig0035711:+7873 | Msa1455330:five_prime_UTR |
| CTGCGAGAGCTATCATCTGG+TGG | 0.595720 | tig0035711:-8161 | Msa1455330:intergenic |
| GAGGTTACATTTATTCCAGA+GGG | 0.598659 | tig0035711:+9939 | Msa1455330:CDS |
| CTACATAAATACTTCCCAGA+AGG | 0.600433 | tig0035711:+9272 | Msa1455330:CDS |
| ACTTGTAAAATAAGAGATTG+TGG | 0.600599 | tig0035711:+10128 | Msa1455330:three_prime_UTR |
| GGAGGTTACATTTATTCCAG+AGG | 0.613456 | tig0035711:+9938 | Msa1455330:CDS |
| GTCGTTGAGAAGATCAGTGA+AGG | 0.615204 | tig0035711:-8262 | Msa1455330:intergenic |
| GTTATGATTGAAACATGGAT+TGG | 0.620851 | tig0035711:+10177 | Msa1455330:three_prime_UTR |
| GTTGTTTGGCAAGTGTGTGG+AGG | 0.625453 | tig0035711:+10060 | Msa1455330:three_prime_UTR |
| TGTATTATGTATCAGGAACC+GGG | 0.629351 | tig0035711:+9383 | Msa1455330:intron |
| TTTACCGAAACAATTTGAAG+CGG | 0.636132 | tig0035711:+10084 | Msa1455330:three_prime_UTR |
| CATATGGCAATAGGATACCA+TGG | 0.637431 | tig0035711:-10294 | Msa1455330:intergenic |
| GTAAAGGATTTCCAAGACCA+TGG | 0.640558 | tig0035711:+10277 | Msa1455330:three_prime_UTR |
| TCAGGAACCGGGAAGAGCAG+AGG | 0.643310 | tig0035711:+9394 | Msa1455330:intron |
| ATATCTCCGGGAAACCGTGA+AGG | 0.646295 | tig0035711:-8125 | Msa1455330:intergenic |
| TCATCCTCAGTAAACCAAGA+GGG | 0.652446 | tig0035711:-9545 | Msa1455330:intergenic |
| GTTGAGAAGATCAGTGAAGG+TGG | 0.661175 | tig0035711:-8259 | Msa1455330:intergenic |
| TCTGTTATCAAATAACACAA+TGG | 0.664092 | tig0035711:-10332 | Msa1455330:intergenic |
| ATCATCCTCAGTAAACCAAG+AGG | 0.664682 | tig0035711:-9546 | Msa1455330:intergenic |
| GGTGTTAGGAGTTATCACAT+TGG | 0.671282 | tig0035711:+9217 | Msa1455330:CDS |
| TGTAGCATAGAGGGGCCTGG+TGG | 0.676429 | tig0035711:-9254 | Msa1455330:intergenic |
| AGTATTTATGTAGCATAGAG+GGG | 0.678861 | tig0035711:-9262 | Msa1455330:intergenic |
| TATCAAATAACACAATGGTG+AGG | 0.678989 | tig0035711:-10327 | Msa1455330:intergenic |
| GCGATTGCTCCTGATTACAG+AGG | 0.691177 | tig0035711:+8198 | Msa1455330:CDS |
| AGTAAACCAAGAGGGAAGAG+GGG | 0.692604 | tig0035711:-9537 | Msa1455320:intergenic |
| ATGGAAAACAGATATGCAGG+AGG | 0.696707 | tig0035711:-9179 | Msa1455320:intergenic |
| CCTATATGGGACCTGCAATG+CGG | 0.736611 | tig0035711:-9612 | Msa1455320:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTGAAACAATTTTTTTT+TGG | + | tig0035711:8727-8746 | Msa1455330:intron | 10.0% |
| !! | ATATAAATGCATAAAAAATT+AGG | - | tig0035711:9124-9143 | Msa1455330:intergenic | 10.0% |
| !! | AATAGTTAATAAGGATAATT+TGG | - | tig0035711:8600-8619 | Msa1455330:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | tig0035711:8599-8618 | Msa1455330:intron | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | tig0035711:8623-8642 | Msa1455330:intron | 15.0% |
| !! | GATTCTAATAAAGATAAGAA+AGG | - | tig0035711:8080-8099 | Msa1455330:intergenic | 20.0% |
| !! | TATCTTTATTAGAATCTTTC+AGG | + | tig0035711:8084-8103 | Msa1455330:intron | 20.0% |
| !! | TATAATATTGAGCATAGATT+TGG | - | tig0035711:8485-8504 | Msa1455330:intergenic | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | + | tig0035711:8566-8585 | Msa1455330:intron | 20.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | tig0035711:8609-8628 | Msa1455330:intergenic | 20.0% |
| !! | ATAAAAAGTTATTATTGCGT+TGG | + | tig0035711:8686-8705 | Msa1455330:intron | 20.0% |
| !!! | TTTTTTACTTCAACATGTTT+TGG | + | tig0035711:8964-8983 | Msa1455330:intron | 20.0% |
| !!! | TTTTTATGCATTTATATCCT+AGG | + | tig0035711:9127-9146 | Msa1455330:intron | 20.0% |
| !!! | GTAAATCTATTTTTCCTTTT+AGG | + | tig0035711:9317-9336 | Msa1455330:intron | 20.0% |
| !! | GTTTATATGTATTATGTATC+AGG | + | tig0035711:9376-9395 | Msa1455330:intron | 20.0% |
| !!! | CATTTTCACTATGAAAAAAA+AGG | - | tig0035711:9667-9686 | Msa1455330:intergenic | 20.0% |
| !!! | CAAAAGAATATTTTTCTGAT+AGG | - | tig0035711:9711-9730 | Msa1455330:intergenic | 20.0% |
| !!! | TTTTTTTTTCAAAGACGAAA+TGG | + | tig0035711:10255-10274 | Msa1455330:three_prime_UTR | 20.0% |
| !! | AAATCTAAAATTCCAACACA+AGG | - | tig0035711:8418-8437 | Msa1455330:intergenic | 25.0% |
| !! | TTTCTTGTTGGAAAAGATTT+TGG | + | tig0035711:9152-9171 | Msa1455330:CDS | 25.0% |
| ! | AAGTATTTATGTAGCATAGA+GGG | - | tig0035711:9266-9285 | Msa1455330:intergenic | 25.0% |
| ! | AAAAAAGTTAGCACCTATAT+GGG | - | tig0035711:9628-9647 | Msa1455330:intergenic | 25.0% |
| ! | ATTATGTTTACAAGTTTCCA+GGG | + | tig0035711:9865-9884 | Msa1455330:CDS | 25.0% |
| ! | TTTAATAAATCTTCAATCCC+TGG | - | tig0035711:9885-9904 | Msa1455330:intergenic | 25.0% |
| ! | ATAAATGTAACCTCCAAATT+GGG | - | tig0035711:9933-9952 | Msa1455330:intergenic | 25.0% |
| ! | AATAAATGTAACCTCCAAAT+TGG | - | tig0035711:9934-9953 | Msa1455330:intergenic | 25.0% |
| ! | ACTTGTAAAATAAGAGATTG+TGG | + | tig0035711:10128-10147 | Msa1455330:three_prime_UTR | 25.0% |
| !! | TTCTAGTTATGATTGAAACA+TGG | + | tig0035711:10172-10191 | Msa1455330:three_prime_UTR | 25.0% |
| ! | AATCTTTAACATATGGCAAT+AGG | - | tig0035711:10306-10325 | Msa1455330:intergenic | 25.0% |
| ! | TCTGTTATCAAATAACACAA+TGG | - | tig0035711:10335-10354 | Msa1455330:intergenic | 25.0% |
| TAATAAAGCAAGAGAAACCT+GGG | + | tig0035711:7873-7892 | Msa1455330:five_prime_UTR | 30.0% | |
| GAAACACATTCATTCATTCA+TGG | + | tig0035711:7939-7958 | Msa1455330:exon | 30.0% | |
| TAACGTGTTGAAATGTCTTT+CGG | + | tig0035711:8365-8384 | Msa1455330:intron | 30.0% | |
| !! | AAACGACACTCATTTTGAAA+CGG | - | tig0035711:8517-8536 | Msa1455330:intergenic | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | tig0035711:8518-8537 | Msa1455330:intron | 30.0% |
| ATTATGGATGAAAACAGTCA+CGG | - | tig0035711:9042-9061 | Msa1455330:intergenic | 30.0% | |
| AGTATTTATGTAGCATAGAG+GGG | - | tig0035711:9265-9284 | Msa1455330:intergenic | 30.0% | |
| ! | GAAGTATTTATGTAGCATAG+AGG | - | tig0035711:9267-9286 | Msa1455330:intergenic | 30.0% |
| ATCGATAGTAAAAGCCTAAA+AGG | - | tig0035711:9334-9353 | Msa1455330:intergenic | 30.0% | |
| TTACTATCGATCTATCATCA+TGG | + | tig0035711:9343-9362 | Msa1455330:intron | 30.0% | |
| ATGTATTATGTATCAGGAAC+CGG | + | tig0035711:9382-9401 | Msa1455330:intron | 30.0% | |
| GTAATTCACTTCTTGAGAAA+AGG | - | tig0035711:9469-9488 | Msa1455330:intergenic | 30.0% | |
| !! | TCTTGGTTTTCATTAGCTAT+TGG | - | tig0035711:9491-9510 | Msa1455330:intergenic | 30.0% |
| TAATGAAAACCAAGAGATCA+TGG | + | tig0035711:9496-9515 | Msa1455330:CDS | 30.0% | |
| GAAAAAAGTTAGCACCTATA+TGG | - | tig0035711:9629-9648 | Msa1455330:intergenic | 30.0% | |
| AGTGAAAATGTGAAATGCTA+TGG | + | tig0035711:9677-9696 | Msa1455330:intron | 30.0% | |
| ! | TTGTACTTTTGTAGAACAGT+TGG | + | tig0035711:9777-9796 | Msa1455330:intron | 30.0% |
| GATTATGTTTACAAGTTTCC+AGG | + | tig0035711:9864-9883 | Msa1455330:CDS | 30.0% | |
| TTTACCGAAACAATTTGAAG+CGG | + | tig0035711:10084-10103 | Msa1455330:three_prime_UTR | 30.0% | |
| GTTATGATTGAAACATGGAT+TGG | + | tig0035711:10177-10196 | Msa1455330:three_prime_UTR | 30.0% | |
| TTTCAAAGACGAAATGGTAA+AGG | + | tig0035711:10261-10280 | Msa1455330:three_prime_UTR | 30.0% | |
| GTGAGGAAATCTTTAACATA+TGG | - | tig0035711:10313-10332 | Msa1455330:intergenic | 30.0% | |
| TATCAAATAACACAATGGTG+AGG | - | tig0035711:10330-10349 | Msa1455330:intergenic | 30.0% | |
| GTAATAAAGCAAGAGAAACC+TGG | + | tig0035711:7872-7891 | Msa1455330:five_prime_UTR | 35.0% | |
| CTACATTAACGAACTTGTGT+TGG | - | tig0035711:7972-7991 | Msa1455330:intergenic | 35.0% | |
| CAACACAAGTTCGTTAATGT+AGG | + | tig0035711:7970-7989 | Msa1455330:CDS | 35.0% | |
| AAGATTGGATTCTGACTAAC+CGG | - | tig0035711:8028-8047 | Msa1455330:intergenic | 35.0% | |
| TCACAAGACAAGACAAAGAT+TGG | - | tig0035711:8043-8062 | Msa1455330:intergenic | 35.0% | |
| !! | TGATGCTCTTGCTATTTCTA+AGG | + | tig0035711:8299-8318 | Msa1455330:CDS | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | tig0035711:8648-8667 | Msa1455330:intron | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | tig0035711:8652-8671 | Msa1455330:intron | 35.0% |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | tig0035711:8753-8772 | Msa1455330:intron | 35.0% |
| AGTCTCTCATATTTGCGAAT+TGG | - | tig0035711:8866-8885 | Msa1455330:intergenic | 35.0% | |
| GCTGGAATTGCTTCAAATTA+TGG | - | tig0035711:9058-9077 | Msa1455330:intergenic | 35.0% | |
| ATATCCTAGGTGTTTCTTGT+TGG | + | tig0035711:9140-9159 | Msa1455330:intron | 35.0% | |
| ! | TTTTCCAACAAGAAACACCT+AGG | - | tig0035711:9147-9166 | Msa1455330:intergenic | 35.0% |
| ! | CTTGTTGGAAAAGATTTTGG+AGG | + | tig0035711:9155-9174 | Msa1455330:CDS | 35.0% |
| AGAATGGAAAACAGATATGC+AGG | - | tig0035711:9185-9204 | Msa1455330:intergenic | 35.0% | |
| GTGTTAGGAGTTATCACATT+GGG | + | tig0035711:9218-9237 | Msa1455330:CDS | 35.0% | |
| CTACATAAATACTTCCCAGA+AGG | + | tig0035711:9272-9291 | Msa1455330:CDS | 35.0% | |
| TCAAAATGTAGAAGCCTTCT+GGG | - | tig0035711:9289-9308 | Msa1455330:intergenic | 35.0% | |
| !! | AAGGCTTCTACATTTTGAGA+TGG | + | tig0035711:9291-9310 | Msa1455330:CDS | 35.0% |
| !!! | CTTCTACATTTTGAGATGGA+AGG | + | tig0035711:9295-9314 | Msa1455330:CDS | 35.0% |
| TGTATTATGTATCAGGAACC+GGG | + | tig0035711:9383-9402 | Msa1455330:intron | 35.0% | |
| GAGGATGATCTTTCAACTTA+TGG | + | tig0035711:9560-9579 | Msa1455330:CDS | 35.0% | |
| GAATCCAGATTTCTCATACA+AGG | - | tig0035711:9588-9607 | Msa1455330:intergenic | 35.0% | |
| GAGGTTACATTTATTCCAGA+GGG | + | tig0035711:9939-9958 | Msa1455330:CDS | 35.0% | |
| TCAAGAACAATTTCCTGAAC+AGG | + | tig0035711:9974-9993 | Msa1455330:CDS | 35.0% | |
| AACTTCAAATGTGTTTGGCT+AGG | - | tig0035711:10022-10041 | Msa1455330:intergenic | 35.0% | |
| GACGAAACTTCAAATGTGTT+TGG | - | tig0035711:10027-10046 | Msa1455330:intergenic | 35.0% | |
| ! | CATGAATGATCTGTGTTGTT+TGG | + | tig0035711:10046-10065 | Msa1455330:three_prime_UTR | 35.0% |
| AAACTCCACATAGCAGAGAT+TGG | + | tig0035711:8000-8019 | Msa1455330:CDS | 40.0% | |
| TGAAGGAATACTACGACGTT+TGG | - | tig0035711:8111-8130 | Msa1455330:intergenic | 40.0% | |
| AACGTCGTAGTATTCCTTCA+CGG | + | tig0035711:8111-8130 | Msa1455330:CDS | 40.0% | |
| !!! | TCAGTGAAGGTGGTTTTTTC+CGG | - | tig0035711:8252-8271 | Msa1455330:intergenic | 40.0% |
| ACTAGTGTCATACCTTGTGT+TGG | + | tig0035711:8403-8422 | Msa1455330:intron | 40.0% | |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | tig0035711:8757-8776 | Msa1455330:intergenic | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | tig0035711:8651-8670 | Msa1455330:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | tig0035711:8757-8776 | Msa1455330:intron | 40.0% |
| !! | ATCCTCGAAGCTCTAAGTAA+CGG | - | tig0035711:8896-8915 | Msa1455330:intergenic | 40.0% |
| AGTCACGGCTAGCAAATATT+AGG | - | tig0035711:9027-9046 | Msa1455330:intergenic | 40.0% | |
| ! | TTTGAAGCAATTCCAGCCAA+TGG | + | tig0035711:9061-9080 | Msa1455330:intron | 40.0% |
| TTGAAGCAATTCCAGCCAAT+GGG | + | tig0035711:9062-9081 | Msa1455330:intron | 40.0% | |
| TATGAAGTATAGCGACCCAT+TGG | - | tig0035711:9080-9099 | Msa1455330:intergenic | 40.0% | |
| ATGGAAAACAGATATGCAGG+AGG | - | tig0035711:9182-9201 | Msa1455330:intergenic | 40.0% | |
| TTTCCATTCTACACCCAGAA+AGG | + | tig0035711:9195-9214 | Msa1455330:CDS | 40.0% | |
| TTCCATTCTACACCCAGAAA+GGG | + | tig0035711:9196-9215 | Msa1455330:CDS | 40.0% | |
| TAACTCCTAACACCCTTTCT+GGG | - | tig0035711:9211-9230 | Msa1455330:intergenic | 40.0% | |
| ATAACTCCTAACACCCTTTC+TGG | - | tig0035711:9212-9231 | Msa1455330:intergenic | 40.0% | |
| GGTGTTAGGAGTTATCACAT+TGG | + | tig0035711:9217-9236 | Msa1455330:CDS | 40.0% | |
| CTCAAAATGTAGAAGCCTTC+TGG | - | tig0035711:9290-9309 | Msa1455330:intergenic | 40.0% | |
| CCACTAAATCCATGATCTCT+TGG | - | tig0035711:9508-9527 | Msa1455330:intergenic | 40.0% | |
| CCAAGAGATCATGGATTTAG+TGG | + | tig0035711:9505-9524 | Msa1455330:CDS | 40.0% | |
| TCATCCTCAGTAAACCAAGA+GGG | - | tig0035711:9548-9567 | Msa1455330:intergenic | 40.0% | |
| ATCATCCTCAGTAAACCAAG+AGG | - | tig0035711:9549-9568 | Msa1455330:intergenic | 40.0% | |
| ! | AGTGTTGGAACTTTGACTAC+AGG | - | tig0035711:9825-9844 | Msa1455330:intergenic | 40.0% |
| AGTTCCAACACTGCTGATAA+TGG | + | tig0035711:9833-9852 | Msa1455330:CDS | 40.0% | |
| GTTCCAACACTGCTGATAAT+GGG | + | tig0035711:9834-9853 | Msa1455330:CDS | 40.0% | |
| !! | ACTGCTGATAATGGGTGAAA+AGG | + | tig0035711:9842-9861 | Msa1455330:CDS | 40.0% |
| CAAATTGGGAACAAGCTCTT+TGG | - | tig0035711:9919-9938 | Msa1455330:intergenic | 40.0% | |
| ! | CAAAGAGCTTGTTCCCAATT+TGG | + | tig0035711:9917-9936 | Msa1455330:CDS | 40.0% |
| GGAGGTTACATTTATTCCAG+AGG | + | tig0035711:9938-9957 | Msa1455330:CDS | 40.0% | |
| TGAACAAAATGAGTTCCCTC+TGG | - | tig0035711:9957-9976 | Msa1455330:intergenic | 40.0% | |
| ! | ATAAGCTGATTCACCTGTTC+AGG | - | tig0035711:9990-10009 | Msa1455330:intergenic | 40.0% |
| GTAAAGGATTTCCAAGACCA+TGG | + | tig0035711:10277-10296 | Msa1455330:three_prime_UTR | 40.0% | |
| CATATGGCAATAGGATACCA+TGG | - | tig0035711:10297-10316 | Msa1455330:intergenic | 40.0% | |
| CACATAGCAGAGATTGGAAC+CGG | + | tig0035711:8006-8025 | Msa1455330:CDS | 45.0% | |
| AGTATTCCTTCACGGTTTCC+CGG | + | tig0035711:8119-8138 | Msa1455330:CDS | 45.0% | |
| AGTCCATAGCCTCTGTAATC+AGG | - | tig0035711:8210-8229 | Msa1455330:intergenic | 45.0% | |
| !!! | AAGGTGGTTTTTTCCGGTTC+AGG | - | tig0035711:8246-8265 | Msa1455330:intergenic | 45.0% |
| GTTGAGAAGATCAGTGAAGG+TGG | - | tig0035711:8262-8281 | Msa1455330:intergenic | 45.0% | |
| GTCGTTGAGAAGATCAGTGA+AGG | - | tig0035711:8265-8284 | Msa1455330:intergenic | 45.0% | |
| GAGCATCAAGAATCGCTAGA+AGG | - | tig0035711:8287-8306 | Msa1455330:intergenic | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | tig0035711:8756-8775 | Msa1455330:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | tig0035711:8756-8775 | Msa1455330:intron | 45.0% |
| AGTAAACCAAGAGGGAAGAG+GGG | - | tig0035711:9540-9559 | Msa1455330:intergenic | 45.0% | |
| CAGTAAACCAAGAGGGAAGA+GGG | - | tig0035711:9541-9560 | Msa1455330:intergenic | 45.0% | |
| TCAGTAAACCAAGAGGGAAG+AGG | - | tig0035711:9542-9561 | Msa1455330:intergenic | 45.0% | |
| TCTTCCCTCTTGGTTTACTG+AGG | + | tig0035711:9541-9560 | Msa1455330:CDS | 45.0% | |
| ! | GGAGCCTTGTATGAGAAATC+TGG | + | tig0035711:9581-9600 | Msa1455330:CDS | 45.0% |
| GGAACTTTGACTACAGGATC+TGG | - | tig0035711:9819-9838 | Msa1455330:intergenic | 45.0% | |
| TCACCCATTATCAGCAGTGT+TGG | - | tig0035711:9840-9859 | Msa1455330:intergenic | 45.0% | |
| ! | AGAGCTTGTTCCCAATTTGG+AGG | + | tig0035711:9920-9939 | Msa1455330:CDS | 45.0% |
| TGTGTTTGGCTAGGAAAGCA+AGG | - | tig0035711:10013-10032 | Msa1455330:intergenic | 45.0% | |
| !! | TGTGTTGTTTGGCAAGTGTG+TGG | + | tig0035711:10057-10076 | Msa1455330:three_prime_UTR | 45.0% |
| CCAGCCGCTTCAAATTGTTT+CGG | - | tig0035711:10091-10110 | Msa1455330:intergenic | 45.0% | |
| GCAATAGGATACCATGGTCT+TGG | - | tig0035711:10291-10310 | Msa1455330:intergenic | 45.0% | |
| AAGCAAGAGAAACCTGGGCT+TGG | + | tig0035711:7878-7897 | Msa1455330:five_prime_UTR | 50.0% | |
| CGGTTCCAATCTCTGCTATG+TGG | - | tig0035711:8008-8027 | Msa1455330:intergenic | 50.0% | |
| ATATCTCCGGGAAACCGTGA+AGG | - | tig0035711:8128-8147 | Msa1455330:intergenic | 50.0% | |
| TTCACGGTTTCCCGGAGATA+TGG | + | tig0035711:8127-8146 | Msa1455330:CDS | 50.0% | |
| !! | AGGAGCAATCGCTCTGAAAC+CGG | - | tig0035711:8190-8209 | Msa1455330:intergenic | 50.0% |
| GCGATTGCTCCTGATTACAG+AGG | + | tig0035711:8198-8217 | Msa1455330:CDS | 50.0% | |
| GCTCCTGATTACAGAGGCTA+TGG | + | tig0035711:8204-8223 | Msa1455330:CDS | 50.0% | |
| !!! | TTTTTTCCGGTTCAGGAGGC+TGG | - | tig0035711:8239-8258 | Msa1455330:intergenic | 50.0% |
| !!! | GTGGTTTTTTCCGGTTCAGG+AGG | - | tig0035711:8243-8262 | Msa1455330:intergenic | 50.0% |
| GACCGTTACTTAGAGCTTCG+AGG | + | tig0035711:8891-8910 | Msa1455330:intron | 50.0% | |
| AAGTATAGCGACCCATTGGC+TGG | - | tig0035711:9076-9095 | Msa1455330:intergenic | 50.0% | |
| CACCCTTTCTGGGTGTAGAA+TGG | - | tig0035711:9201-9220 | Msa1455330:intergenic | 50.0% | |
| !! | CTACACCCAGAAAGGGTGTT+AGG | + | tig0035711:9203-9222 | Msa1455330:CDS | 50.0% |
| GGAGTTCCATATGTTCCACC+AGG | + | tig0035711:9239-9258 | Msa1455330:CDS | 50.0% | |
| TTATGTAGCATAGAGGGGCC+TGG | - | tig0035711:9260-9279 | Msa1455330:intergenic | 50.0% | |
| AAATCAGCCTCTGCTCTTCC+CGG | - | tig0035711:9404-9423 | Msa1455330:intergenic | 50.0% | |
| !! | GGAAGAGCAGAGGCTGATTT+TGG | + | tig0035711:9404-9423 | Msa1455330:CDS | 50.0% |
| CCTATATGGGACCTGCAATG+CGG | - | tig0035711:9615-9634 | Msa1455330:intergenic | 50.0% | |
| GTTGTTTGGCAAGTGTGTGG+AGG | + | tig0035711:10060-10079 | Msa1455330:three_prime_UTR | 50.0% | |
| ! | CCGAAACAATTTGAAGCGGC+TGG | + | tig0035711:10088-10107 | Msa1455330:three_prime_UTR | 50.0% |
| AACACTGACATGCCAAGCCC+AGG | - | tig0035711:7893-7912 | Msa1455330:intergenic | 55.0% | |
| TCCCGGAGATATGGTACTCC+TGG | + | tig0035711:8136-8155 | Msa1455330:CDS | 55.0% | |
| !! | GCCAGGAGTACCATATCTCC+GGG | - | tig0035711:8140-8159 | Msa1455330:intergenic | 55.0% |
| !! | CGCCAGGAGTACCATATCTC+CGG | - | tig0035711:8141-8160 | Msa1455330:intergenic | 55.0% |
| CTGCGAGAGCTATCATCTGG+TGG | - | tig0035711:8164-8183 | Msa1455330:intergenic | 55.0% | |
| CACCAGATGATAGCTCTCGC+AGG | + | tig0035711:8162-8181 | Msa1455330:CDS | 55.0% | |
| CACCTGCGAGAGCTATCATC+TGG | - | tig0035711:8167-8186 | Msa1455330:intergenic | 55.0% | |
| ATGATAGCTCTCGCAGGTGC+CGG | + | tig0035711:8168-8187 | Msa1455330:CDS | 55.0% | |
| !! | CAAGAGGGAAGAGGGGTATC+AGG | - | tig0035711:9533-9552 | Msa1455330:intergenic | 55.0% |
| CTGATACCCCTCTTCCCTCT+TGG | + | tig0035711:9531-9550 | Msa1455330:CDS | 55.0% | |
| TGGATTCCGAACCGCATTGC+AGG | + | tig0035711:9601-9620 | Msa1455330:CDS | 55.0% | |
| ATGGGACCTGCAATGCGGTT+CGG | - | tig0035711:9610-9629 | Msa1455330:intergenic | 55.0% | |
| CCGCATTGCAGGTCCCATAT+AGG | + | tig0035711:9612-9631 | Msa1455330:CDS | 55.0% | |
| GCGGCTGGAATTTCTTGCGA+AGG | + | tig0035711:10103-10122 | Msa1455330:three_prime_UTR | 55.0% | |
| ! | AGCTATCATCTGGTGGCGCC+AGG | - | tig0035711:8157-8176 | Msa1455330:intergenic | 60.0% |
| ATCCGACCAGCCTCCTGAAC+CGG | + | tig0035711:8230-8249 | Msa1455330:CDS | 60.0% | |
| TTCCGGTTCAGGAGGCTGGT+CGG | - | tig0035711:8235-8254 | Msa1455330:intergenic | 60.0% | |
| GAGGGGCCTGGTGGAACATA+TGG | - | tig0035711:9248-9267 | Msa1455330:intergenic | 60.0% | |
| TGTAGCATAGAGGGGCCTGG+TGG | - | tig0035711:9257-9276 | Msa1455330:intergenic | 60.0% | |
| TCAGGAACCGGGAAGAGCAG+AGG | + | tig0035711:9394-9413 | Msa1455330:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0035711 | gene | 7848 | 10360 | 7848 | ID=Msa1455330;Name=Msa1455330 |
| tig0035711 | mRNA | 7848 | 10360 | 7848 | ID=Msa1455330-mRNA-1;Parent=Msa1455330;Name=Msa1455330-mRNA-1;_AED=0.08;_eAED=0.08;_QI=110|1|1|1|1|1|5|323|311 |
| tig0035711 | exon | 7848 | 8027 | 7848 | ID=Msa1455330-mRNA-1:exon:20221;Parent=Msa1455330-mRNA-1 |
| tig0035711 | exon | 8106 | 8320 | 8106 | ID=Msa1455330-mRNA-1:exon:20222;Parent=Msa1455330-mRNA-1 |
| tig0035711 | exon | 9149 | 9316 | 9149 | ID=Msa1455330-mRNA-1:exon:20223;Parent=Msa1455330-mRNA-1 |
| tig0035711 | exon | 9398 | 9633 | 9398 | ID=Msa1455330-mRNA-1:exon:20224;Parent=Msa1455330-mRNA-1 |
| tig0035711 | exon | 9791 | 10360 | 9791 | ID=Msa1455330-mRNA-1:exon:20225;Parent=Msa1455330-mRNA-1 |
| tig0035711 | five_prime_UTR | 7848 | 7957 | 7848 | ID=Msa1455330-mRNA-1:five_prime_utr;Parent=Msa1455330-mRNA-1 |
| tig0035711 | CDS | 7958 | 8027 | 7958 | ID=Msa1455330-mRNA-1:cds;Parent=Msa1455330-mRNA-1 |
| tig0035711 | CDS | 8106 | 8320 | 8106 | ID=Msa1455330-mRNA-1:cds;Parent=Msa1455330-mRNA-1 |
| tig0035711 | CDS | 9149 | 9316 | 9149 | ID=Msa1455330-mRNA-1:cds;Parent=Msa1455330-mRNA-1 |
| tig0035711 | CDS | 9398 | 9633 | 9398 | ID=Msa1455330-mRNA-1:cds;Parent=Msa1455330-mRNA-1 |
| tig0035711 | CDS | 9791 | 10037 | 9791 | ID=Msa1455330-mRNA-1:cds;Parent=Msa1455330-mRNA-1 |
| tig0035711 | three_prime_UTR | 10038 | 10360 | 10038 | ID=Msa1455330-mRNA-1:three_prime_utr;Parent=Msa1455330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
