Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335090 | XP_013460223.2 | 98.765 | 243 | 3 | 0 | 1 | 243 | 13 | 255 | 1.51e-177 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335090 | sp|Q9M022|AIRP2_ARATH | 62.963 | 243 | 89 | 1 | 1 | 243 | 1 | 242 | 2.56e-107 | 312 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335090 | A0A396ISD6 | 98.765 | 243 | 3 | 0 | 1 | 243 | 13 | 255 | 7.22e-178 | 498 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0612920 | Msa1335090 | 0.815420 | 9.332326e-52 | -8.615850e-47 |
| Msa0653540 | Msa1335090 | 0.833161 | 6.252447e-56 | -8.615850e-47 |
| Msa0720340 | Msa1335090 | 0.833363 | 5.566531e-56 | -8.615850e-47 |
| Msa0783680 | Msa1335090 | 0.810727 | 9.984067e-51 | -8.615850e-47 |
| Msa0192290 | Msa1335090 | 0.810019 | 1.419281e-50 | -8.615850e-47 |
| Msa0225420 | Msa1335090 | 0.837729 | 4.377686e-57 | -8.615850e-47 |
| Msa0225720 | Msa1335090 | 0.801777 | 7.672492e-49 | -8.615850e-47 |
| Msa1269440 | Msa1335090 | 0.826639 | 2.429680e-54 | -8.615850e-47 |
| Msa1335090 | Msa1339930 | -0.800393 | 1.472150e-48 | -8.615850e-47 |
| Msa1335090 | Msa1354860 | -0.801431 | 9.032378e-49 | -8.615850e-47 |
| Msa1335090 | Msa1374140 | 0.800613 | 1.327503e-48 | -8.615850e-47 |
| Msa1335090 | Msa1382640 | 0.800340 | 1.509119e-48 | -8.615850e-47 |
| Msa1335090 | Msa1394110 | -0.802375 | 5.781546e-49 | -8.615850e-47 |
| Msa1335090 | Msa1455330 | 0.826012 | 3.426258e-54 | -8.615850e-47 |
| Msa0412820 | Msa1335090 | 0.810239 | 1.272169e-50 | -8.615850e-47 |
| Msa0457530 | Msa1335090 | 0.807360 | 5.251093e-50 | -8.615850e-47 |
| Msa0482360 | Msa1335090 | 0.806984 | 6.308863e-50 | -8.615850e-47 |
| Msa1043660 | Msa1335090 | 0.812043 | 5.170618e-51 | -8.615850e-47 |
| Msa0256570 | Msa1335090 | 0.832724 | 8.030641e-56 | -8.615850e-47 |
| Msa0295710 | Msa1335090 | 0.820520 | 6.566640e-53 | -8.615850e-47 |
| Msa0301260 | Msa1335090 | 0.843820 | 1.107832e-58 | -8.615850e-47 |
| Msa0334300 | Msa1335090 | 0.861103 | 1.297404e-63 | -8.615850e-47 |
| Msa0358220 | Msa1335090 | -0.806675 | 7.331119e-50 | -8.615850e-47 |
| Msa0504430 | Msa1335090 | 0.874017 | 9.376500e-68 | -8.615850e-47 |
| Msa0510240 | Msa1335090 | -0.814571 | 1.439948e-51 | -8.615850e-47 |
| Msa0859120 | Msa1335090 | 0.874853 | 4.879988e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335090 | MtrunA17_Chr3g0104651 | 98.765 | 243 | 3 | 0 | 1 | 243 | 13 | 255 | 0.0 | 498 |
| Msa1335090 | MtrunA17_Chr4g0047521 | 63.374 | 243 | 88 | 1 | 1 | 243 | 7 | 248 | 1.09e-110 | 318 |
| Msa1335090 | MtrunA17_Chr2g0281861 | 63.866 | 238 | 86 | 0 | 6 | 243 | 14 | 251 | 4.00e-109 | 314 |
| Msa1335090 | MtrunA17_Chr4g0006201 | 61.062 | 226 | 88 | 0 | 6 | 231 | 10 | 235 | 1.93e-103 | 300 |
| Msa1335090 | MtrunA17_Chr7g0242261 | 61.333 | 225 | 86 | 1 | 6 | 229 | 25 | 249 | 1.75e-99 | 290 |
| Msa1335090 | MtrunA17_Chr8g0376861 | 45.417 | 240 | 124 | 3 | 6 | 238 | 10 | 249 | 8.72e-65 | 202 |
| Msa1335090 | MtrunA17_Chr3g0123161 | 44.215 | 242 | 126 | 3 | 6 | 238 | 13 | 254 | 1.70e-60 | 191 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1335090 | AT3G47160.1 | 63.362 | 232 | 85 | 0 | 1 | 232 | 1 | 232 | 3.52e-111 | 320 |
| Msa1335090 | AT5G01520.1 | 62.963 | 243 | 89 | 1 | 1 | 243 | 1 | 242 | 2.60e-108 | 312 |
| Msa1335090 | AT3G47160.2 | 60.246 | 244 | 85 | 1 | 1 | 232 | 1 | 244 | 1.71e-107 | 311 |
| Msa1335090 | AT5G58787.1 | 63.291 | 237 | 84 | 1 | 1 | 237 | 1 | 234 | 2.27e-103 | 300 |
| Msa1335090 | AT3G47160.3 | 63.590 | 195 | 71 | 0 | 38 | 232 | 1 | 195 | 9.09e-93 | 271 |
| Msa1335090 | AT5G58787.2 | 59.494 | 237 | 78 | 2 | 1 | 237 | 1 | 219 | 1.09e-91 | 270 |
| Msa1335090 | AT5G58787.3 | 57.604 | 217 | 74 | 2 | 21 | 237 | 2 | 200 | 1.63e-79 | 238 |
| Msa1335090 | AT5G01520.2 | 63.473 | 167 | 61 | 0 | 6 | 172 | 5 | 171 | 1.02e-74 | 224 |
| Msa1335090 | AT1G24440.1 | 44.309 | 246 | 133 | 3 | 1 | 242 | 5 | 250 | 2.51e-65 | 203 |
| Msa1335090 | AT1G13195.1 | 43.096 | 239 | 129 | 3 | 6 | 238 | 16 | 253 | 5.20e-63 | 198 |
| Msa1335090 | AT1G24440.2 | 43.519 | 216 | 118 | 3 | 31 | 242 | 3 | 218 | 3.09e-55 | 176 |
| Msa1335090 | AT1G13195.2 | 42.105 | 209 | 114 | 3 | 36 | 238 | 8 | 215 | 6.02e-53 | 171 |
Find 48 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTTAAATTATTGTCCAAAA+TGG | 0.208869 | tig0000051:+12606 | None:intergenic |
| CAGAATCTTACAATTCTCTT+TGG | 0.221212 | tig0000051:+12740 | None:intergenic |
| TTGTACTTGTAAATCCATTT+TGG | 0.225211 | tig0000051:-12620 | Msa1335090:three_prime_UTR |
| TCAGAAAGGTGTCACAGATT+TGG | 0.314514 | tig0000051:-13960 | Msa1335090:CDS |
| CACATTTGGTGGCAACAATT+AGG | 0.316903 | tig0000051:+13797 | None:intergenic |
| CACCAGAGTTTACTCTCTTC+AGG | 0.343822 | tig0000051:+12814 | None:intergenic |
| TCAACATTTATGCAGACATA+TGG | 0.362672 | tig0000051:-14217 | Msa1335090:intron |
| TGGACTGATTACCGACTTGC+TGG | 0.372757 | tig0000051:-14694 | Msa1335090:CDS |
| TACCGACTTGCTGGTGCTCT+TGG | 0.377091 | tig0000051:-14685 | Msa1335090:CDS |
| CATCCTCCTTCTTTATCCCT+TGG | 0.389896 | tig0000051:+14775 | None:intergenic |
| TTTATGCAGACATATGGAAA+TGG | 0.389922 | tig0000051:-14211 | Msa1335090:intron |
| CTCCTTCTTTATCCCTTGGA+TGG | 0.400445 | tig0000051:+14779 | None:intergenic |
| TGTAACACTTGAAACACATT+TGG | 0.405912 | tig0000051:+13783 | None:intergenic |
| GAGTAAACTCTGGTGACCTT+TGG | 0.424393 | tig0000051:-12806 | Msa1335090:CDS |
| ACAGGAATGTGGAGTTTGCT+TGG | 0.445145 | tig0000051:-13843 | Msa1335090:CDS |
| CTTCAGGCTATCCCGGCAAA+AGG | 0.462552 | tig0000051:+12830 | None:intergenic |
| AACACTTGAAACACATTTGG+TGG | 0.465530 | tig0000051:+13786 | None:intergenic |
| TTCAGGCTATCCCGGCAAAA+GGG | 0.465840 | tig0000051:+12831 | None:intergenic |
| TAGGACACATGTCTTGGGTC+TGG | 0.466508 | tig0000051:+12684 | None:intergenic |
| GGATCATAGGACACATGTCT+TGG | 0.474901 | tig0000051:+12678 | None:intergenic |
| GTTTCAAGTGTTACAGAGAA+TGG | 0.480502 | tig0000051:-13775 | Msa1335090:intron |
| TTACTCTCTTCAGGCTATCC+CGG | 0.484027 | tig0000051:+12823 | None:intergenic |
| TTCTGAAGTTGCAATAGAGC+AGG | 0.493865 | tig0000051:+13977 | None:intergenic |
| AATTGACATTGAAAGAGAAC+AGG | 0.495415 | tig0000051:-13861 | Msa1335090:CDS |
| GATCATAGGACACATGTCTT+GGG | 0.498896 | tig0000051:+12679 | None:intergenic |
| CAAGTGACATTGTTGATGTT+GGG | 0.499712 | tig0000051:-12770 | Msa1335090:CDS |
| CTTGGGTCTGGAATGATAAG+AGG | 0.500748 | tig0000051:+12696 | None:intergenic |
| TTATGCAGACATATGGAAAT+GGG | 0.508592 | tig0000051:-14210 | Msa1335090:intron |
| GTGTCACAGATTTGGAAGAA+AGG | 0.513362 | tig0000051:-13952 | Msa1335090:CDS |
| AAGGAGGATGCTTTCAAATG+AGG | 0.531201 | tig0000051:-14762 | Msa1335090:CDS |
| TCAGGGCATTAGGCCATCCA+AGG | 0.533527 | tig0000051:-14792 | Msa1335090:intron |
| ACAAGTGACATTGTTGATGT+TGG | 0.533887 | tig0000051:-12771 | Msa1335090:CDS |
| GCTCAGAATTCTAATCTATG+TGG | 0.548859 | tig0000051:-14659 | Msa1335090:intron |
| GGATTTACAAGTACAATGAA+AGG | 0.553386 | tig0000051:+12627 | None:intergenic |
| CTACTATTTCAATATATGAA+AGG | 0.564225 | tig0000051:-14183 | Msa1335090:CDS |
| GATTTACAAGTACAATGAAA+GGG | 0.577355 | tig0000051:+12628 | None:intergenic |
| GCTCTATTGCAACTTCAGAA+AGG | 0.581652 | tig0000051:-13974 | Msa1335090:CDS |
| TTGCTTGGAGGTGAAAGCAA+AGG | 0.585171 | tig0000051:-13828 | Msa1335090:CDS |
| TTGTGTCTGTGTAAATCCAA+AGG | 0.597551 | tig0000051:+12790 | None:intergenic |
| CAGGGCATTAGGCCATCCAA+GGG | 0.597884 | tig0000051:-14791 | Msa1335090:CDS |
| GGCCATCCAAGGGATAAAGA+AGG | 0.603064 | tig0000051:-14781 | Msa1335090:CDS |
| ATTGAAAGAGAACAGGAATG+TGG | 0.606235 | tig0000051:-13854 | Msa1335090:CDS |
| GGAATGTGGAGTTTGCTTGG+AGG | 0.613843 | tig0000051:-13840 | Msa1335090:CDS |
| TCAGGCTATCCCGGCAAAAG+GGG | 0.616325 | tig0000051:+12832 | None:intergenic |
| CATCCAAGGGATAAAGAAGG+AGG | 0.651855 | tig0000051:-14778 | Msa1335090:CDS |
| AACCAAGAGCACCAGCAAGT+CGG | 0.654588 | tig0000051:+14683 | None:intergenic |
| AGCCTGAAGAGAGTAAACTC+TGG | 0.666391 | tig0000051:-12816 | Msa1335090:CDS |
| GAGGCTATCATATAGTCCAG+TGG | 0.703150 | tig0000051:-14743 | Msa1335090:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAGATTAAATTTTTAATCT+GGG | + | tig0000051:12802-12821 | None:intergenic | 10.0% |
| !!! | AAAAGATTAAATTTTTAATC+TGG | + | tig0000051:12803-12822 | None:intergenic | 10.0% |
| !!! | ATAAAACTAAGTTTAATTTT+TGG | - | tig0000051:14607-14626 | Msa1335090:intron | 10.0% |
| !! | TTGAAAAAATATAAAATCAA+TGG | + | tig0000051:14975-14994 | None:intergenic | 10.0% |
| !!! | AATTTCAGTGAAAATATTTT+TGG | - | tig0000051:12605-12624 | Msa1335090:three_prime_UTR | 15.0% |
| !!! | ATTTCAGTGAAAATATTTTT+GGG | - | tig0000051:12606-12625 | Msa1335090:three_prime_UTR | 15.0% |
| !!! | TTTTTTTGTGAAGAATTTTT+GGG | - | tig0000051:12819-12838 | Msa1335090:CDS | 15.0% |
| !!! | CATTTTAGTGTTTTTTTTTT+TGG | - | tig0000051:13361-13380 | Msa1335090:intron | 15.0% |
| !! | CCAATAATTTATAAAAGTAA+GGG | + | tig0000051:13838-13857 | None:intergenic | 15.0% |
| !!! | CCTTACTTTTATAAATTATT+GGG | - | tig0000051:13836-13855 | Msa1335090:CDS | 15.0% |
| !!! | ACAATTTTATTGTAAGTTTA+AGG | - | tig0000051:14130-14149 | Msa1335090:intron | 15.0% |
| !! | AAAATGTCAAATATAAAACT+TGG | + | tig0000051:14642-14661 | None:intergenic | 15.0% |
| !!! | TGAAAATATTTTTGGGATAT+GGG | - | tig0000051:12613-12632 | Msa1335090:three_prime_UTR | 20.0% |
| !!! | TCTTCAAATTCACTTTTTTT+AGG | - | tig0000051:12712-12731 | Msa1335090:CDS | 20.0% |
| !!! | CTTCAAATTCACTTTTTTTA+GGG | - | tig0000051:12713-12732 | Msa1335090:CDS | 20.0% |
| !!! | CTTTTTTTGTGAAGAATTTT+TGG | - | tig0000051:12818-12837 | Msa1335090:CDS | 20.0% |
| !!! | TCATCAACATTGATTAAAAA+AGG | + | tig0000051:13076-13095 | None:intergenic | 20.0% |
| !! | AAAGAATTTGTATGATACTT+GGG | - | tig0000051:13202-13221 | Msa1335090:intron | 20.0% |
| !! | CTTAAGTATGTATATTGTTT+AGG | + | tig0000051:13650-13669 | None:intergenic | 20.0% |
| !!! | CCCTTACTTTTATAAATTAT+TGG | - | tig0000051:13835-13854 | Msa1335090:CDS | 20.0% |
| !! | CCCAATAATTTATAAAAGTA+AGG | + | tig0000051:13839-13858 | None:intergenic | 20.0% |
| !! | CTACTATTTCAATATATGAA+AGG | - | tig0000051:14093-14112 | Msa1335090:intron | 20.0% |
| !! | TTATCATCAAGAACATAAAA+TGG | + | tig0000051:14224-14243 | None:intergenic | 20.0% |
| !!! | CAATCAACTTTTTTAAAAGT+AGG | - | tig0000051:14757-14776 | Msa1335090:CDS | 20.0% |
| !!! | TTTTATAAAGTAAAAGCAAC+CGG | + | tig0000051:14945-14964 | None:intergenic | 20.0% |
| !!! | TTCTATTTTCTTCAACAAAT+TGG | + | tig0000051:15092-15111 | None:intergenic | 20.0% |
| !! | GTATAAGATACAATATATCA+AGG | + | tig0000051:15338-15357 | None:intergenic | 20.0% |
| !! | AGAATAAACTAGTAACTAAT+TGG | + | tig0000051:15360-15379 | None:intergenic | 20.0% |
| !! | AGTTAAATTATTGTCCAAAA+TGG | + | tig0000051:15673-15692 | None:intergenic | 20.0% |
| !!! | GTGAAAATATTTTTGGGATA+TGG | - | tig0000051:12612-12631 | Msa1335090:three_prime_UTR | 25.0% |
| ! | CAAGTATCATACAAATTCTT+TGG | + | tig0000051:13203-13222 | None:intergenic | 25.0% |
| ! | CAAAGAATTTGTATGATACT+TGG | - | tig0000051:13201-13220 | Msa1335090:intron | 25.0% |
| !!! | AATTTGCATGTTTGTTGTAT+TGG | - | tig0000051:13268-13287 | Msa1335090:intron | 25.0% |
| ! | GTGAAAAACATCTCAAAATT+TGG | + | tig0000051:13458-13477 | None:intergenic | 25.0% |
| !!! | ATGTTTTTCACTGTTTTTCA+GGG | - | tig0000051:13467-13486 | Msa1335090:intron | 25.0% |
| !!! | TATAAAAGTAAGGGTTTTAG+TGG | + | tig0000051:13829-13848 | None:intergenic | 25.0% |
| !! | ACTTTTATAAATTATTGGGC+CGG | - | tig0000051:13840-13859 | Msa1335090:CDS | 25.0% |
| !!! | AATGACTATATTTTAACGAG+TGG | - | tig0000051:13955-13974 | Msa1335090:CDS | 25.0% |
| ! | ATATAACTGGAAACAATCTA+AGG | + | tig0000051:14566-14585 | None:intergenic | 25.0% |
| ! | TATGATCAAGTGTATATAAC+TGG | + | tig0000051:14579-14598 | None:intergenic | 25.0% |
| ! | TTGATATCAAAGATGTAATG+TGG | + | tig0000051:14841-14860 | None:intergenic | 25.0% |
| ! | ACATCTTTGATATCAATGAA+AGG | - | tig0000051:14845-14864 | Msa1335090:intron | 25.0% |
| ! | TAACAATCTTTGAATTCATG+AGG | + | tig0000051:14921-14940 | None:intergenic | 25.0% |
| ! | TGAATTCAAAGATTGTTATC+CGG | - | tig0000051:14923-14942 | Msa1335090:intron | 25.0% |
| ! | ATTGGAAACAAGATAACAAT+AGG | + | tig0000051:15074-15093 | None:intergenic | 25.0% |
| !! | GCAACAATTTTGTAATTACA+AGG | - | tig0000051:15260-15279 | Msa1335090:intron | 25.0% |
| ! | TAATGCAAGTAAACAAGTAT+TGG | + | tig0000051:15308-15327 | None:intergenic | 25.0% |
| ! | TTACCTAAAAAATGGATCAT+AGG | + | tig0000051:15614-15633 | None:intergenic | 25.0% |
| !!! | ATGATCCATTTTTTAGGTAA+AGG | - | tig0000051:15614-15633 | Msa1335090:CDS | 25.0% |
| ! | AACAACCTTTACCTAAAAAA+TGG | + | tig0000051:15622-15641 | None:intergenic | 25.0% |
| ! | GATTTACAAGTACAATGAAA+GGG | + | tig0000051:15651-15670 | None:intergenic | 25.0% |
| !! | TTGTACTTGTAAATCCATTT+TGG | - | tig0000051:15656-15675 | Msa1335090:exon | 25.0% |
| TTGAACATAATCACATGTGT+CGG | + | tig0000051:12956-12975 | None:intergenic | 30.0% | |
| TGAAGTTTAGTGAGAATTTG+AGG | - | tig0000051:13138-13157 | Msa1335090:intron | 30.0% | |
| AATGAAGCTGTTTGATAAAC+TGG | - | tig0000051:13176-13195 | Msa1335090:intron | 30.0% | |
| ATGAAGCTGTTTGATAAACT+GGG | - | tig0000051:13177-13196 | Msa1335090:intron | 30.0% | |
| TAACTAACTCAAACACATCA+AGG | + | tig0000051:13430-13449 | None:intergenic | 30.0% | |
| !! | GATGTTTTTCACTGTTTTTC+AGG | - | tig0000051:13466-13485 | Msa1335090:intron | 30.0% |
| ! | TTTTTCTCTCTCTTGTTCAA+TGG | - | tig0000051:13562-13581 | Msa1335090:intron | 30.0% |
| AGTACACAAAACGGAAATTA+TGG | + | tig0000051:13995-14014 | None:intergenic | 30.0% | |
| TCAACATTTATGCAGACATA+TGG | - | tig0000051:14059-14078 | Msa1335090:intron | 30.0% | |
| TTTATGCAGACATATGGAAA+TGG | - | tig0000051:14065-14084 | Msa1335090:intron | 30.0% | |
| TTATGCAGACATATGGAAAT+GGG | - | tig0000051:14066-14085 | Msa1335090:intron | 30.0% | |
| AATTGACATTGAAAGAGAAC+AGG | - | tig0000051:14415-14434 | Msa1335090:intron | 30.0% | |
| TGTAACACTTGAAACACATT+TGG | + | tig0000051:14496-14515 | None:intergenic | 30.0% | |
| ! | TGACATTTTGTCAATCCTTT+TGG | - | tig0000051:14653-14672 | Msa1335090:intron | 30.0% |
| TTACAACTCTAGTTACCAAA+AGG | + | tig0000051:14671-14690 | None:intergenic | 30.0% | |
| GCAGAATGTTAAAAGCAAAA+TGG | + | tig0000051:14699-14718 | None:intergenic | 30.0% | |
| CAATAAGATCTATAGAGGAA+AGG | + | tig0000051:14785-14804 | None:intergenic | 30.0% | |
| GTGATCAATAAGATCTATAG+AGG | + | tig0000051:14790-14809 | None:intergenic | 30.0% | |
| GATCACTTAGATGATATCAA+TGG | - | tig0000051:14804-14823 | Msa1335090:intron | 30.0% | |
| TTTGACTAAAAATGTGAGAC+AGG | + | tig0000051:14882-14901 | None:intergenic | 30.0% | |
| AGTCAAAAAAGTTGAGATTG+AGG | - | tig0000051:14895-14914 | Msa1335090:intron | 30.0% | |
| ! | CTTCATATTGAAAGCGTATT+TGG | + | tig0000051:15188-15207 | None:intergenic | 30.0% |
| !! | TAAACAAGTATTGGTTAGGT+GGG | + | tig0000051:15299-15318 | None:intergenic | 30.0% |
| !! | CAAGTAAACAAGTATTGGTT+AGG | + | tig0000051:15303-15322 | None:intergenic | 30.0% |
| !!! | ACAAAGCTGTTTTTTGATTC+AGG | - | tig0000051:15401-15420 | Msa1335090:intron | 30.0% |
| !!! | TTTTTTGATTCAGGTGTCTT+AGG | - | tig0000051:15410-15429 | Msa1335090:intron | 30.0% |
| CAGAATCTTACAATTCTCTT+TGG | + | tig0000051:15539-15558 | None:intergenic | 30.0% | |
| !!! | TGTCCTATGATCCATTTTTT+AGG | - | tig0000051:15608-15627 | Msa1335090:CDS | 30.0% |
| GGATTTACAAGTACAATGAA+AGG | + | tig0000051:15652-15671 | None:intergenic | 30.0% | |
| CATAGACTTCAACACAAAAG+TGG | + | tig0000051:12903-12922 | None:intergenic | 35.0% | |
| TCAGACACAAACATGTCTAT+CGG | + | tig0000051:12931-12950 | None:intergenic | 35.0% | |
| GTTTGTGCTTTGTAGATTGA+AGG | - | tig0000051:13032-13051 | Msa1335090:intron | 35.0% | |
| !! | TTGCATGTTTGTTGTATTGG+TGG | - | tig0000051:13271-13290 | Msa1335090:intron | 35.0% |
| !! | TGCATGTTTGTTGTATTGGT+GGG | - | tig0000051:13272-13291 | Msa1335090:intron | 35.0% |
| AACAAGAGAGAGAAAAAGTG+GGG | + | tig0000051:13559-13578 | None:intergenic | 35.0% | |
| GAACAAGAGAGAGAAAAAGT+GGG | + | tig0000051:13560-13579 | None:intergenic | 35.0% | |
| TGAACAAGAGAGAGAAAAAG+TGG | + | tig0000051:13561-13580 | None:intergenic | 35.0% | |
| GCTCAGAATTCTAATCTATG+TGG | - | tig0000051:13617-13636 | Msa1335090:intron | 35.0% | |
| !!! | AATTGCTTTTGTTGTTGTGC+AGG | - | tig0000051:13785-13804 | Msa1335090:CDS | 35.0% |
| !!! | ATTGCTTTTGTTGTTGTGCA+GGG | - | tig0000051:13786-13805 | Msa1335090:CDS | 35.0% |
| AACGGAAATTATGGAAGAAC+TGG | + | tig0000051:13986-14005 | None:intergenic | 35.0% | |
| GACAATGCAAGTACACAAAA+CGG | + | tig0000051:14004-14023 | None:intergenic | 35.0% | |
| ! | TTTTGCCTATTGCTCATTCA+GGG | - | tig0000051:14186-14205 | Msa1335090:CDS | 35.0% |
| ATTGAAAGAGAACAGGAATG+TGG | - | tig0000051:14422-14441 | Msa1335090:intron | 35.0% | |
| AACACTTGAAACACATTTGG+TGG | + | tig0000051:14493-14512 | None:intergenic | 35.0% | |
| ! | GTTTCAAGTGTTACAGAGAA+TGG | - | tig0000051:14501-14520 | Msa1335090:intron | 35.0% |
| ACTGGAAACAATCTAAGGAT+GGG | + | tig0000051:14561-14580 | None:intergenic | 35.0% | |
| AACTGGAAACAATCTAAGGA+TGG | + | tig0000051:14562-14581 | None:intergenic | 35.0% | |
| AAATGTGAGACAGGAAATTC+AGG | + | tig0000051:14873-14892 | None:intergenic | 35.0% | |
| !! | CCAATCTCTAAAGTGTAAAG+AGG | + | tig0000051:15007-15026 | None:intergenic | 35.0% |
| ! | CCTCTTTACACTTTAGAGAT+TGG | - | tig0000051:15004-15023 | Msa1335090:intron | 35.0% |
| ACGCTTTCAATATGAAGTGT+TGG | - | tig0000051:15191-15210 | Msa1335090:intron | 35.0% | |
| !! | AAACAAGTATTGGTTAGGTG+GGG | + | tig0000051:15298-15317 | None:intergenic | 35.0% |
| !! | GTAAACAAGTATTGGTTAGG+TGG | + | tig0000051:15300-15319 | None:intergenic | 35.0% |
| TTGTGTCTGTGTAAATCCAA+AGG | + | tig0000051:15489-15508 | None:intergenic | 35.0% | |
| ACAAGTGACATTGTTGATGT+TGG | - | tig0000051:15505-15524 | Msa1335090:intron | 35.0% | |
| CAAGTGACATTGTTGATGTT+GGG | - | tig0000051:15506-15525 | Msa1335090:intron | 35.0% | |
| ! | GTTTAGTGAGAATTTGAGGC+TGG | - | tig0000051:13142-13161 | Msa1335090:intron | 40.0% |
| !!! | TCACTGTTTTTCAGGGCATT+AGG | - | tig0000051:13474-13493 | Msa1335090:intron | 40.0% |
| AAGGAGGATGCTTTCAAATG+AGG | - | tig0000051:13514-13533 | Msa1335090:intron | 40.0% | |
| TTGTCAAATAGTAGCTGCAG+CGG | - | tig0000051:13898-13917 | Msa1335090:CDS | 40.0% | |
| ! | GTTTTGCCTATTGCTCATTC+AGG | - | tig0000051:14185-14204 | Msa1335090:CDS | 40.0% |
| AAACACCCTGAATGAGCAAT+AGG | + | tig0000051:14194-14213 | None:intergenic | 40.0% | |
| ! | TTGCTCATTCAGGGTGTTTA+TGG | - | tig0000051:14195-14214 | Msa1335090:CDS | 40.0% |
| !! | TTCTGAAGTTGCAATAGAGC+AGG | + | tig0000051:14302-14321 | None:intergenic | 40.0% |
| GCTCTATTGCAACTTCAGAA+AGG | - | tig0000051:14302-14321 | Msa1335090:intron | 40.0% | |
| !! | TCAGAAAGGTGTCACAGATT+TGG | - | tig0000051:14316-14335 | Msa1335090:intron | 40.0% |
| GTGTCACAGATTTGGAAGAA+AGG | - | tig0000051:14324-14343 | Msa1335090:intron | 40.0% | |
| ! | CACATTTGGTGGCAACAATT+AGG | + | tig0000051:14482-14501 | None:intergenic | 40.0% |
| GATCATAGGACACATGTCTT+GGG | + | tig0000051:15600-15619 | None:intergenic | 40.0% | |
| GACACACAAACTCGAGACAT+CGG | + | tig0000051:13009-13028 | None:intergenic | 45.0% | |
| CTCCTTCTTTATCCCTTGGA+TGG | + | tig0000051:13500-13519 | None:intergenic | 45.0% | |
| CATCCAAGGGATAAAGAAGG+AGG | - | tig0000051:13498-13517 | Msa1335090:intron | 45.0% | |
| CATCCTCCTTCTTTATCCCT+TGG | + | tig0000051:13504-13523 | None:intergenic | 45.0% | |
| GAGGCTATCATATAGTCCAG+TGG | - | tig0000051:13533-13552 | Msa1335090:intron | 45.0% | |
| !! | GTTTTAGTGGCCTTACCCTT+AGG | + | tig0000051:13816-13835 | None:intergenic | 45.0% |
| ! | ACAGGAATGTGGAGTTTGCT+TGG | - | tig0000051:14433-14452 | Msa1335090:intron | 45.0% |
| TTGCTTGGAGGTGAAAGCAA+AGG | - | tig0000051:14448-14467 | Msa1335090:intron | 45.0% | |
| !! | TGACATGACGGATATGTGTG+TGG | + | tig0000051:15129-15148 | None:intergenic | 45.0% |
| TCCGTCATGTCATGTCATGT+CGG | - | tig0000051:15137-15156 | Msa1335090:intron | 45.0% | |
| TCCGACATGACATGACATGA+CGG | + | tig0000051:15141-15160 | None:intergenic | 45.0% | |
| TCATGTCATGTCATGTCGGA+TGG | - | tig0000051:15141-15160 | Msa1335090:intron | 45.0% | |
| TTACTCTCTTCAGGCTATCC+CGG | + | tig0000051:15456-15475 | None:intergenic | 45.0% | |
| AGCCTGAAGAGAGTAAACTC+TGG | - | tig0000051:15460-15479 | Msa1335090:intron | 45.0% | |
| CACCAGAGTTTACTCTCTTC+AGG | + | tig0000051:15465-15484 | None:intergenic | 45.0% | |
| GAGTAAACTCTGGTGACCTT+TGG | - | tig0000051:15470-15489 | Msa1335090:intron | 45.0% | |
| ! | CTTGGGTCTGGAATGATAAG+AGG | + | tig0000051:15583-15602 | None:intergenic | 45.0% |
| GGATCATAGGACACATGTCT+TGG | + | tig0000051:15601-15620 | None:intergenic | 45.0% | |
| GGCCATCCAAGGGATAAAGA+AGG | - | tig0000051:13495-13514 | Msa1335090:intron | 50.0% | |
| !! | TGGACTGATTACCGACTTGC+TGG | - | tig0000051:13582-13601 | Msa1335090:intron | 50.0% |
| !! | AACCAAGAGCACCAGCAAGT+CGG | + | tig0000051:13596-13615 | None:intergenic | 50.0% |
| !!! | CTTTTGTTGTTGTGCAGGGC+CGG | - | tig0000051:13790-13809 | Msa1335090:CDS | 50.0% |
| AAATAGCGCACCGCACAACA+GGG | + | tig0000051:13866-13885 | None:intergenic | 50.0% | |
| TAAATAGCGCACCGCACAAC+AGG | + | tig0000051:13867-13886 | None:intergenic | 50.0% | |
| GCTATGGCACTACAGTGTAG+CGG | - | tig0000051:13922-13941 | Msa1335090:CDS | 50.0% | |
| ! | GGAATGTGGAGTTTGCTTGG+AGG | - | tig0000051:14436-14455 | Msa1335090:intron | 50.0% |
| ! | CTCAATCTTGCCCCTTTTGC+CGG | - | tig0000051:15434-15453 | Msa1335090:intron | 50.0% |
| ! | TCAATCTTGCCCCTTTTGCC+GGG | - | tig0000051:15435-15454 | Msa1335090:intron | 50.0% |
| TTCAGGCTATCCCGGCAAAA+GGG | + | tig0000051:15448-15467 | None:intergenic | 50.0% | |
| TAGGACACATGTCTTGGGTC+TGG | + | tig0000051:15595-15614 | None:intergenic | 50.0% | |
| ! | TCAGGGCATTAGGCCATCCA+AGG | - | tig0000051:13484-13503 | Msa1335090:intron | 55.0% |
| ! | CAGGGCATTAGGCCATCCAA+GGG | - | tig0000051:13485-13504 | Msa1335090:intron | 55.0% |
| GAGAGAAAAAGTGGGGCCAC+TGG | + | tig0000051:13552-13571 | None:intergenic | 55.0% | |
| !! | TACCGACTTGCTGGTGCTCT+TGG | - | tig0000051:13591-13610 | Msa1335090:intron | 55.0% |
| ! | TAGTGGCCTTACCCTTAGGC+CGG | + | tig0000051:13812-13831 | None:intergenic | 55.0% |
| ! | TAGTAGCTGCAGCGGTGCTA+TGG | - | tig0000051:13906-13925 | Msa1335090:CDS | 55.0% |
| TCAGGCTATCCCGGCAAAAG+GGG | + | tig0000051:15447-15466 | None:intergenic | 55.0% | |
| CTTCAGGCTATCCCGGCAAA+AGG | + | tig0000051:15449-15468 | None:intergenic | 55.0% | |
| TGTTGTGCAGGGCCGGCCTA+AGG | - | tig0000051:13797-13816 | Msa1335090:CDS | 65.0% | |
| GTTGTGCAGGGCCGGCCTAA+GGG | - | tig0000051:13798-13817 | Msa1335090:CDS | 65.0% | |
| ATTGGGCCGGCCCTGTTGTG+CGG | - | tig0000051:13853-13872 | Msa1335090:CDS | 65.0% | |
| GCAGGGCCGGCCTAAGGGTA+AGG | - | tig0000051:13803-13822 | Msa1335090:CDS | 70.0% | |
| AGCGCACCGCACAACAGGGC+CGG | + | tig0000051:13862-13881 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0000051 | gene | 12583 | 15715 | 12583 | ID=Msa1335090;Name=Msa1335090 |
| tig0000051 | mRNA | 12583 | 15715 | 12583 | ID=Msa1335090-mRNA-1;Parent=Msa1335090;Name=Msa1335090-mRNA-1;_AED=0.13;_eAED=0.13;_QI=48|1|1|1|1|1|5|82|243 |
| tig0000051 | exon | 12583 | 12875 | 12583 | ID=Msa1335090-mRNA-1:exon:18;Parent=Msa1335090-mRNA-1 |
| tig0000051 | exon | 13776 | 14010 | 13776 | ID=Msa1335090-mRNA-1:exon:17;Parent=Msa1335090-mRNA-1 |
| tig0000051 | exon | 14158 | 14224 | 14158 | ID=Msa1335090-mRNA-1:exon:16;Parent=Msa1335090-mRNA-1 |
| tig0000051 | exon | 14660 | 14810 | 14660 | ID=Msa1335090-mRNA-1:exon:15;Parent=Msa1335090-mRNA-1 |
| tig0000051 | exon | 15600 | 15715 | 15600 | ID=Msa1335090-mRNA-1:exon:14;Parent=Msa1335090-mRNA-1 |
| tig0000051 | five_prime_UTR | 15668 | 15715 | 15668 | ID=Msa1335090-mRNA-1:five_prime_utr;Parent=Msa1335090-mRNA-1 |
| tig0000051 | CDS | 15600 | 15667 | 15600 | ID=Msa1335090-mRNA-1:cds;Parent=Msa1335090-mRNA-1 |
| tig0000051 | CDS | 14660 | 14810 | 14660 | ID=Msa1335090-mRNA-1:cds;Parent=Msa1335090-mRNA-1 |
| tig0000051 | CDS | 14158 | 14224 | 14158 | ID=Msa1335090-mRNA-1:cds;Parent=Msa1335090-mRNA-1 |
| tig0000051 | CDS | 13776 | 14010 | 13776 | ID=Msa1335090-mRNA-1:cds;Parent=Msa1335090-mRNA-1 |
| tig0000051 | CDS | 12665 | 12875 | 12665 | ID=Msa1335090-mRNA-1:cds;Parent=Msa1335090-mRNA-1 |
| tig0000051 | three_prime_UTR | 12583 | 12664 | 12583 | ID=Msa1335090-mRNA-1:three_prime_utr;Parent=Msa1335090-mRNA-1 |
| Gene Sequence |
| Protein sequence |
