Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1137980 | XP_003621540.1 | 96.476 | 227 | 3 | 1 | 81 | 302 | 1 | 227 | 6.14e-159 | 452 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1137980 | sp|Q8LE94|RING3_ARATH | 56.596 | 235 | 85 | 5 | 81 | 302 | 1 | 231 | 5.82e-77 | 237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1137980 | B7FJQ8 | 96.476 | 227 | 3 | 1 | 81 | 302 | 1 | 227 | 2.93e-159 | 452 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0034590 | Msa1137980 | -0.814971 | 1.173716e-51 | -8.615850e-47 |
| Msa0090870 | Msa1137980 | 0.815603 | 8.496484e-52 | -8.615850e-47 |
| Msa0097220 | Msa1137980 | -0.806489 | 8.024974e-50 | -8.615850e-47 |
| Msa0108490 | Msa1137980 | -0.824293 | 8.730046e-54 | -8.615850e-47 |
| Msa0612920 | Msa1137980 | 0.803000 | 4.296159e-49 | -8.615850e-47 |
| Msa0619450 | Msa1137980 | -0.802959 | 4.379359e-49 | -8.615850e-47 |
| Msa0619530 | Msa1137980 | -0.806430 | 8.256709e-50 | -8.615850e-47 |
| Msa0622800 | Msa1137980 | -0.801322 | 9.509323e-49 | -8.615850e-47 |
| Msa0644340 | Msa1137980 | 0.807549 | 4.788534e-50 | -8.615850e-47 |
| Msa0653540 | Msa1137980 | 0.806211 | 9.182893e-50 | -8.615850e-47 |
| Msa0654500 | Msa1137980 | -0.800016 | 1.756371e-48 | -8.615850e-47 |
| Msa0659580 | Msa1137980 | -0.803295 | 3.731174e-49 | -8.615850e-47 |
| Msa0742690 | Msa1137980 | -0.801663 | 8.095753e-49 | -8.615850e-47 |
| Msa0129820 | Msa1137980 | -0.821589 | 3.726501e-53 | -8.615850e-47 |
| Msa0160120 | Msa1137980 | -0.801373 | 9.282740e-49 | -8.615850e-47 |
| Msa0378440 | Msa1137980 | -0.808637 | 2.808658e-50 | -8.615850e-47 |
| Msa0383460 | Msa1137980 | 0.824115 | 9.612166e-54 | -8.615850e-47 |
| Msa0417060 | Msa1137980 | 0.816235 | 6.139050e-52 | -8.615850e-47 |
| Msa0427890 | Msa1137980 | -0.810672 | 1.025920e-50 | -8.615850e-47 |
| Msa0433890 | Msa1137980 | -0.803235 | 3.840268e-49 | -8.615850e-47 |
| Msa0434830 | Msa1137980 | -0.805340 | 1.399804e-49 | -8.615850e-47 |
| Msa0473000 | Msa1137980 | 0.800696 | 1.276835e-48 | -8.615850e-47 |
| Msa0474120 | Msa1137980 | -0.808180 | 3.515824e-50 | -8.615850e-47 |
| Msa0474290 | Msa1137980 | -0.832207 | 1.078113e-55 | -8.615850e-47 |
| Msa0477390 | Msa1137980 | 0.803733 | 3.027278e-49 | -8.615850e-47 |
| Msa0482360 | Msa1137980 | 0.804206 | 2.414319e-49 | -8.615850e-47 |
| Msa0985980 | Msa1137980 | -0.805736 | 1.155740e-49 | -8.615850e-47 |
| Msa1026970 | Msa1137980 | 0.840303 | 9.429091e-58 | -8.615850e-47 |
| Msa1050900 | Msa1137980 | 0.962201 | 1.349498e-120 | -8.615850e-47 |
| Msa1050970 | Msa1137980 | 0.945714 | 1.820268e-104 | -8.615850e-47 |
| Msa0336550 | Msa1137980 | -0.802518 | 5.401588e-49 | -8.615850e-47 |
| Msa1111900 | Msa1137980 | 0.810942 | 8.970064e-51 | -8.615850e-47 |
| Msa1133760 | Msa1137980 | 0.803511 | 3.366835e-49 | -8.615850e-47 |
| Msa1137980 | Msa1154310 | 0.836588 | 8.569983e-57 | -8.615850e-47 |
| Msa1137980 | Msa1197740 | -0.811564 | 6.573790e-51 | -8.615850e-47 |
| Msa1137980 | Msa1218310 | -0.807756 | 4.325815e-50 | -8.615850e-47 |
| Msa1137980 | Msa1218350 | -0.800221 | 1.595408e-48 | -8.615850e-47 |
| Msa1137980 | Msa1225280 | -0.820310 | 7.337645e-53 | -8.615850e-47 |
| Msa1137980 | Msa1251440 | -0.807168 | 5.765582e-50 | -8.615850e-47 |
| Msa1137980 | Msa1393730 | 0.828451 | 8.927178e-55 | -8.615850e-47 |
| Msa1137980 | Msa1395200 | -0.822690 | 2.070238e-53 | -8.615850e-47 |
| Msa1137980 | Msa1395380 | -0.801306 | 9.584248e-49 | -8.615850e-47 |
| Msa1137980 | Msa1397560 | -0.808438 | 3.097287e-50 | -8.615850e-47 |
| Msa1137980 | Msa1439600 | 0.966126 | 1.662548e-125 | -8.615850e-47 |
| Msa1137980 | Msa1454300 | -0.803195 | 3.914742e-49 | -8.615850e-47 |
| Msa1137980 | Msa1455330 | 0.810075 | 1.380644e-50 | -8.615850e-47 |
| Msa0517200 | Msa1137980 | 0.828346 | 9.461063e-55 | -8.615850e-47 |
| Msa0518720 | Msa1137980 | -0.832034 | 1.190257e-55 | -8.615850e-47 |
| Msa0548420 | Msa1137980 | 0.805922 | 1.056155e-49 | -8.615850e-47 |
| Msa0550810 | Msa1137980 | -0.806253 | 8.996554e-50 | -8.615850e-47 |
| Msa0550820 | Msa1137980 | -0.809617 | 1.731830e-50 | -8.615850e-47 |
| Msa0866150 | Msa1137980 | -0.810688 | 1.017781e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1137980 | MtrunA17_Chr7g0220221 | 96.476 | 227 | 3 | 1 | 81 | 302 | 1 | 227 | 5.65e-163 | 452 |
| Msa1137980 | MtrunA17_Chr6g0455521 | 69.912 | 226 | 63 | 1 | 81 | 301 | 1 | 226 | 6.09e-117 | 336 |
| Msa1137980 | MtrunA17_Chr7g0248061 | 35.052 | 194 | 97 | 5 | 114 | 298 | 13 | 186 | 2.11e-26 | 102 |
| Msa1137980 | MtrunA17_Chr8g0348651 | 36.257 | 171 | 88 | 2 | 134 | 298 | 31 | 186 | 2.78e-24 | 97.4 |
| Msa1137980 | MtrunA17_Chr8g0387191 | 35.393 | 178 | 98 | 5 | 130 | 298 | 33 | 202 | 1.08e-22 | 93.6 |
| Msa1137980 | MtrunA17_Chr2g0322261 | 45.312 | 64 | 33 | 1 | 231 | 292 | 14 | 77 | 6.04e-13 | 68.6 |
| Msa1137980 | MtrunA17_Chr3g0125021 | 75.410 | 61 | 14 | 1 | 1 | 60 | 98 | 158 | 2.50e-11 | 61.2 |
| Msa1137980 | MtrunA17_Chr7g0267851 | 41.667 | 60 | 33 | 1 | 235 | 292 | 29 | 88 | 3.59e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1137980 | AT5G38895.1 | 51.802 | 222 | 102 | 2 | 81 | 301 | 1 | 218 | 7.01e-84 | 252 |
| Msa1137980 | AT5G38895.2 | 51.327 | 226 | 105 | 2 | 77 | 301 | 72 | 293 | 2.51e-83 | 253 |
| Msa1137980 | AT5G15790.2 | 53.879 | 232 | 97 | 4 | 81 | 302 | 1 | 232 | 5.58e-83 | 250 |
| Msa1137980 | AT5G15790.5 | 53.879 | 232 | 97 | 4 | 81 | 302 | 1 | 232 | 5.58e-83 | 250 |
| Msa1137980 | AT5G15790.1 | 53.879 | 232 | 97 | 4 | 81 | 302 | 1 | 232 | 5.58e-83 | 250 |
| Msa1137980 | AT5G15790.3 | 53.879 | 232 | 97 | 4 | 81 | 302 | 1 | 232 | 5.58e-83 | 250 |
| Msa1137980 | AT5G38895.3 | 51.327 | 226 | 105 | 2 | 77 | 301 | 111 | 332 | 8.93e-83 | 253 |
| Msa1137980 | AT5G15790.4 | 53.017 | 232 | 99 | 4 | 81 | 302 | 1 | 232 | 1.01e-80 | 245 |
| Msa1137980 | AT3G02290.6 | 56.596 | 235 | 85 | 5 | 81 | 302 | 1 | 231 | 5.91e-78 | 237 |
| Msa1137980 | AT3G02290.4 | 56.596 | 235 | 85 | 5 | 81 | 302 | 1 | 231 | 5.91e-78 | 237 |
| Msa1137980 | AT3G02290.1 | 56.596 | 235 | 85 | 5 | 81 | 302 | 1 | 231 | 5.91e-78 | 237 |
| Msa1137980 | AT3G02290.2 | 56.596 | 235 | 85 | 5 | 81 | 302 | 1 | 231 | 5.91e-78 | 237 |
| Msa1137980 | AT3G02290.3 | 56.596 | 235 | 85 | 5 | 81 | 302 | 1 | 231 | 5.91e-78 | 237 |
| Msa1137980 | AT3G02290.5 | 56.277 | 231 | 84 | 5 | 81 | 298 | 1 | 227 | 7.40e-75 | 229 |
| Msa1137980 | AT5G41350.1 | 37.654 | 162 | 83 | 5 | 148 | 299 | 55 | 208 | 3.50e-23 | 95.1 |
| Msa1137980 | AT5G41350.3 | 37.654 | 162 | 83 | 5 | 148 | 299 | 55 | 208 | 3.50e-23 | 95.1 |
| Msa1137980 | AT5G41350.2 | 37.654 | 162 | 83 | 5 | 148 | 299 | 80 | 233 | 5.49e-23 | 95.5 |
| Msa1137980 | AT1G69085.1 | 65.455 | 55 | 19 | 0 | 246 | 300 | 54 | 108 | 2.55e-21 | 87.4 |
| Msa1137980 | AT4G00335.2 | 36.129 | 155 | 77 | 5 | 149 | 300 | 52 | 187 | 6.99e-21 | 88.6 |
| Msa1137980 | AT4G00335.1 | 36.129 | 155 | 77 | 5 | 149 | 300 | 52 | 187 | 6.99e-21 | 88.6 |
| Msa1137980 | AT4G00335.3 | 36.129 | 155 | 77 | 5 | 149 | 300 | 52 | 187 | 6.99e-21 | 88.6 |
| Msa1137980 | AT4G23450.5 | 58.182 | 55 | 23 | 0 | 247 | 301 | 99 | 153 | 5.67e-17 | 77.0 |
| Msa1137980 | AT4G23450.1 | 58.182 | 55 | 23 | 0 | 247 | 301 | 99 | 153 | 5.67e-17 | 77.0 |
| Msa1137980 | AT4G23450.6 | 58.182 | 55 | 23 | 0 | 247 | 301 | 99 | 153 | 5.67e-17 | 77.0 |
| Msa1137980 | AT4G23450.4 | 58.182 | 55 | 23 | 0 | 247 | 301 | 99 | 153 | 5.67e-17 | 77.0 |
| Msa1137980 | AT4G23450.3 | 58.182 | 55 | 23 | 0 | 247 | 301 | 154 | 208 | 9.90e-17 | 77.8 |
| Msa1137980 | AT4G23450.2 | 58.182 | 55 | 23 | 0 | 247 | 301 | 154 | 208 | 9.90e-17 | 77.8 |
| Msa1137980 | AT4G14220.1 | 45.161 | 62 | 31 | 1 | 240 | 298 | 31 | 92 | 1.09e-12 | 68.2 |
| Msa1137980 | AT5G22000.2 | 42.647 | 68 | 37 | 1 | 227 | 292 | 6 | 73 | 4.69e-12 | 66.2 |
| Msa1137980 | AT5G22000.3 | 43.750 | 64 | 34 | 1 | 231 | 292 | 10 | 73 | 6.92e-12 | 65.9 |
| Msa1137980 | AT5G22000.1 | 43.750 | 64 | 34 | 1 | 231 | 292 | 10 | 73 | 6.92e-12 | 65.9 |
Find 89 sgRNAs with CRISPR-Local
Find 284 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCATTCAGCATCACCAATA+TGG | 0.217937 | 7_4:+7045626 | None:intergenic |
| CGTTTAATCACGAAAGATTA+TGG | 0.237622 | 7_4:+7041801 | None:intergenic |
| TCTTTCTTCCTTGCCAGTTT+TGG | 0.246971 | 7_4:+7041598 | None:intergenic |
| CCACTCGAACTCAAAGATTC+TGG | 0.334628 | 7_4:+7044012 | None:intergenic |
| ATTCATCAATATTCCGTAGA+AGG | 0.334711 | 7_4:-7044266 | Msa1137980:CDS |
| ATGAAGAGTCAGAACCTCTA+AGG | 0.349845 | 7_4:-7044053 | Msa1137980:intron |
| TGTAATCACCATTATCATCT+TGG | 0.369381 | 7_4:-7043119 | Msa1137980:CDS |
| ATCAGGTTTGACCACTTTCA+TGG | 0.373298 | 7_4:+7045770 | None:intergenic |
| TTGCTTCCTACAAAACATTT+CGG | 0.374780 | 7_4:-7045263 | Msa1137980:CDS |
| TCCAGTTCCGATGTATAATC+AGG | 0.379189 | 7_4:+7045753 | None:intergenic |
| GGCGCTTCCTTCATCTGTAC+AGG | 0.397993 | 7_4:-7044235 | Msa1137980:CDS |
| ACATCCACATCAACCCTTAG+AGG | 0.398565 | 7_4:+7044039 | None:intergenic |
| GCATCATAAGGTAACGGCCT+TGG | 0.417133 | 7_4:+7044147 | None:intergenic |
| TTTCAGAGTTTGCCTTGTAA+TGG | 0.419598 | 7_4:-7041538 | Msa1137980:three_prime_UTR |
| TCGTCAGCAAAACTTACAAC+TGG | 0.421306 | 7_4:-7043922 | Msa1137980:CDS |
| GTCACTGCCGCAACCCATAT+TGG | 0.428115 | 7_4:-7045640 | Msa1137980:CDS |
| ATATGCAACCAAGATGATAA+TGG | 0.428358 | 7_4:+7043111 | None:intergenic |
| AATATTACCTTCCCACAAAC+AGG | 0.432696 | 7_4:+7043059 | None:intergenic |
| ACCTGATTATACATCGGAAC+TGG | 0.446597 | 7_4:-7045754 | Msa1137980:CDS |
| TTCTGAAGCGGCTACAGAGC+AGG | 0.457940 | 7_4:-7045803 | Msa1137980:intron |
| CCATTCAGCATCACCAATAT+GGG | 0.461431 | 7_4:+7045627 | None:intergenic |
| CCATATTGGTGATGCTGAAT+GGG | 0.469275 | 7_4:-7045626 | Msa1137980:CDS |
| CTTTGAGTTCGAGTGGTAAG+TGG | 0.471217 | 7_4:-7044005 | Msa1137980:CDS |
| CCCATATTGGTGATGCTGAA+TGG | 0.471445 | 7_4:-7045627 | Msa1137980:CDS |
| AAAGAATCCACCGGAAAAGA+TGG | 0.473727 | 7_4:-7043982 | Msa1137980:CDS |
| CGAAAGTCTTACTGAGGACT+TGG | 0.474607 | 7_4:+7043942 | None:intergenic |
| TGCTGTGAGCGGAAATGCCT+AGG | 0.475931 | 7_4:+7044120 | None:intergenic |
| GCGCCTGCATTTCCCTTCTA+CGG | 0.477472 | 7_4:+7044253 | None:intergenic |
| TGCCTAGGGTCTGCATCATA+AGG | 0.490563 | 7_4:+7044135 | None:intergenic |
| ACATCGGAACTGGAGACAAT+TGG | 0.496458 | 7_4:-7045744 | Msa1137980:CDS |
| TGTTGTCCAACATGTCTTGA+AGG | 0.500625 | 7_4:-7043862 | Msa1137980:intron |
| AGGCTGCCGTAACGGTGATA+AGG | 0.505028 | 7_4:+7045689 | None:intergenic |
| GATGCTGAATGGGATGGGTT+CGG | 0.505832 | 7_4:-7045616 | Msa1137980:intron |
| AGTGACAGCTGTCCTGTTTG+TGG | 0.508370 | 7_4:-7043071 | Msa1137980:CDS |
| ACAGAAGACGACACGGTTGA+AGG | 0.511477 | 7_4:+7045669 | None:intergenic |
| ACTTGTTTCAAGACGTGAGA+AGG | 0.512160 | 7_4:-7044091 | Msa1137980:CDS |
| GCGCTTCCTTCATCTGTACA+GGG | 0.517323 | 7_4:-7044234 | Msa1137980:CDS |
| ATCCTCATAGTCATGTGTAT+AGG | 0.518644 | 7_4:-7045303 | Msa1137980:CDS |
| AGAGGAGAAAAGTATAAATG+AGG | 0.527201 | 7_4:+7041622 | None:intergenic |
| AGCGGCTACAGAGCAGGAAG+AGG | 0.528931 | 7_4:-7045797 | Msa1137980:CDS |
| TTCAGATTGAATCTTTGTCA+TGG | 0.530429 | 7_4:-7041568 | Msa1137980:three_prime_UTR |
| TCATAAGGTAACGGCCTTGG+AGG | 0.533910 | 7_4:+7044150 | None:intergenic |
| CTCCTCTGCCAAAACTGGCA+AGG | 0.535386 | 7_4:-7041606 | Msa1137980:three_prime_UTR |
| GAAGAAATCCTTCCATTACA+AGG | 0.536307 | 7_4:+7041526 | None:intergenic |
| CTAAGTCCTTATCACCGTTA+CGG | 0.536835 | 7_4:-7045695 | Msa1137980:CDS |
| TTCCTATACACATGACTATG+AGG | 0.538622 | 7_4:+7045301 | None:intergenic |
| GTTCAAACTTACAATCATGA+TGG | 0.540605 | 7_4:+7041661 | None:intergenic |
| AGAGTTTGCCTTGTAATGGA+AGG | 0.542103 | 7_4:-7041534 | Msa1137980:three_prime_UTR |
| TTCATCAATATTCCGTAGAA+GGG | 0.549107 | 7_4:-7044265 | Msa1137980:CDS |
| CTTGTTTCAAGACGTGAGAA+GGG | 0.550647 | 7_4:-7044090 | Msa1137980:CDS |
| AGAGTCTTAGACTGAAAGAA+GGG | 0.553763 | 7_4:-7045398 | Msa1137980:intron |
| AGCATCACCAATATGGGTTG+CGG | 0.559590 | 7_4:+7045633 | None:intergenic |
| ACGGTTGAAGGCTGCCGTAA+CGG | 0.561097 | 7_4:+7045681 | None:intergenic |
| ATTCCGTAGAAGGGAAATGC+AGG | 0.562146 | 7_4:-7044256 | Msa1137980:CDS |
| GTGACAGCTGTCCTGTTTGT+GGG | 0.566634 | 7_4:-7043070 | Msa1137980:CDS |
| AAGTTACCTTCAAGACATGT+TGG | 0.571053 | 7_4:+7043856 | None:intergenic |
| AAGAGTCTTAGACTGAAAGA+AGG | 0.574509 | 7_4:-7045399 | Msa1137980:intron |
| AAGAATCCACCGGAAAAGAT+GGG | 0.575796 | 7_4:-7043981 | Msa1137980:CDS |
| AGATATACCGTTCTCCTCCA+AGG | 0.579863 | 7_4:-7044164 | Msa1137980:CDS |
| TGAAGAGTCAGAACCTCTAA+GGG | 0.583867 | 7_4:-7044052 | Msa1137980:intron |
| GAAGAGGGTTGCCATGAAAG+TGG | 0.586339 | 7_4:-7045781 | Msa1137980:CDS |
| TGGTTGCATATACGAGTGGA+TGG | 0.587414 | 7_4:-7043099 | Msa1137980:CDS |
| GCTGTGAGCGGAAATGCCTA+GGG | 0.588359 | 7_4:+7044121 | None:intergenic |
| AGAACCTCTAAGGGTTGATG+TGG | 0.590546 | 7_4:-7044043 | Msa1137980:CDS |
| CCAGAATCTTTGAGTTCGAG+TGG | 0.597311 | 7_4:-7044012 | Msa1137980:CDS |
| GGGTCTGCATCATAAGGTAA+CGG | 0.597642 | 7_4:+7044141 | None:intergenic |
| CACCGGAAAAGATGGGTCAA+AGG | 0.597790 | 7_4:-7043974 | Msa1137980:CDS |
| ATTGGTGATGCTGAATGGGA+TGG | 0.604969 | 7_4:-7045622 | Msa1137980:CDS |
| TTGGTGATGCTGAATGGGAT+GGG | 0.609228 | 7_4:-7045621 | Msa1137980:CDS |
| GCGGCTACAGAGCAGGAAGA+GGG | 0.612853 | 7_4:-7045796 | Msa1137980:CDS |
| TACCTTATGATGCAGACCCT+AGG | 0.614377 | 7_4:-7044137 | Msa1137980:CDS |
| CGCTTCCTTCATCTGTACAG+GGG | 0.615527 | 7_4:-7044233 | Msa1137980:CDS |
| TATAGGAACTGCGTTTGTGT+CGG | 0.618127 | 7_4:-7045286 | Msa1137980:CDS |
| ATCTTGGTTGCATATACGAG+TGG | 0.623166 | 7_4:-7043103 | Msa1137980:CDS |
| TGTGTATGCATCATCAGAAG+AGG | 0.628234 | 7_4:-7043890 | Msa1137980:CDS |
| CAGCTGTCCTGTTTGTGGGA+AGG | 0.631029 | 7_4:-7043066 | Msa1137980:intron |
| CAAGTCCGTCATGCTGTGAG+CGG | 0.633869 | 7_4:+7044109 | None:intergenic |
| GTAACGGCCTTGGAGGAGAA+CGG | 0.636124 | 7_4:+7044157 | None:intergenic |
| GTATGCATCATCAGAAGAGG+AGG | 0.639945 | 7_4:-7043887 | Msa1137980:CDS |
| TGCTGACGAAAGTCTTACTG+AGG | 0.641679 | 7_4:+7043936 | None:intergenic |
| GGTAAGTGGAAAGAATCCAC+CGG | 0.653432 | 7_4:-7043991 | Msa1137980:CDS |
| GCTTCCTTCATCTGTACAGG+GGG | 0.654449 | 7_4:-7044232 | Msa1137980:CDS |
| GAGTCTTAGACTGAAAGAAG+GGG | 0.654534 | 7_4:-7045397 | Msa1137980:intron |
| AACTGGAGACAATTGGTCGG+TGG | 0.666263 | 7_4:-7045737 | Msa1137980:CDS |
| GTCTTACTGAGGACTTGGAA+CGG | 0.666475 | 7_4:+7043947 | None:intergenic |
| CGGAACTGGAGACAATTGGT+CGG | 0.666930 | 7_4:-7045740 | Msa1137980:CDS |
| GGTCAAACCTGATTATACAT+CGG | 0.667703 | 7_4:-7045760 | Msa1137980:CDS |
| CATTTCCGCTCACAGCATGA+CGG | 0.669127 | 7_4:-7044114 | Msa1137980:CDS |
| CGACACAACAGAAGACGACA+CGG | 0.728156 | 7_4:+7045662 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATATTATATTATATT+AGG | - | chr7_4:7042585-7042604 | Msa1137980:intron | 0.0% |
| !! | TATTGTATTATATTAGAATT+AGG | - | chr7_4:7042740-7042759 | Msa1137980:intron | 10.0% |
| !! | ATAATATTACAATTAAGAAT+TGG | + | chr7_4:7044096-7044115 | None:intergenic | 10.0% |
| !!! | TAAATTTTGTTTGTATAAAT+TGG | - | chr7_4:7044115-7044134 | Msa1137980:CDS | 10.0% |
| !! | ATTTGAATTTAATATATTTG+TGG | - | chr7_4:7045418-7045437 | Msa1137980:intron | 10.0% |
| !! | AAAAAATTTGCATTGAAATT+TGG | + | chr7_4:7042421-7042440 | None:intergenic | 15.0% |
| !! | AATTTACAATAAGATACTTA+AGG | + | chr7_4:7042949-7042968 | None:intergenic | 15.0% |
| !!! | TTGACTTAATTTGTTTAATT+CGG | - | chr7_4:7043660-7043679 | Msa1137980:intron | 15.0% |
| !!! | TCTTTTTTGAATCAATAGTT+TGG | - | chr7_4:7041801-7041820 | Msa1137980:exon | 20.0% |
| !!! | TTTTCAAGTTATCTTGTTTT+TGG | - | chr7_4:7041824-7041843 | Msa1137980:CDS | 20.0% |
| !!! | TTTCAAGTTATCTTGTTTTT+GGG | - | chr7_4:7041825-7041844 | Msa1137980:CDS | 20.0% |
| !!! | TTTTTATGTTCCATAATCTA+AGG | - | chr7_4:7042225-7042244 | Msa1137980:intron | 20.0% |
| !!! | TTTTATATCTAAAATCCTTC+TGG | - | chr7_4:7042450-7042469 | Msa1137980:intron | 20.0% |
| !! | ATTGGAAAAAAGTTATATGA+TGG | + | chr7_4:7043091-7043110 | None:intergenic | 20.0% |
| !! | ATTTCATACTGTTTAATACT+AGG | - | chr7_4:7043566-7043585 | Msa1137980:intron | 20.0% |
| !!! | TGACTTAATTTGTTTAATTC+GGG | - | chr7_4:7043661-7043680 | Msa1137980:intron | 20.0% |
| !! | CGAAAAAAAAAACTGTAAAA+CGG | + | chr7_4:7043901-7043920 | None:intergenic | 20.0% |
| !!! | CGTTTTACAGTTTTTTTTTT+CGG | - | chr7_4:7043899-7043918 | Msa1137980:CDS | 20.0% |
| !!! | TCACATGTTTTGATTTTAAT+TGG | - | chr7_4:7044616-7044635 | Msa1137980:intron | 20.0% |
| !! | TTACTAATTTACATATGATC+TGG | - | chr7_4:7044897-7044916 | Msa1137980:intron | 20.0% |
| !!! | CATAGTTTGATTGATTTAAT+CGG | + | chr7_4:7044945-7044964 | None:intergenic | 20.0% |
| !!! | AGTGTTTATAATTTGCAATA+AGG | + | chr7_4:7045275-7045294 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTGTTTTGATGC+AGG | - | chr7_4:7045550-7045569 | Msa1137980:intron | 20.0% |
| !!! | AAATTTTGAAGCTGAAATCA+TGG | - | chr7_4:7042020-7042039 | Msa1137980:intron | 25.0% |
| !!! | AATTTTGAAGCTGAAATCAT+GGG | - | chr7_4:7042021-7042040 | Msa1137980:intron | 25.0% |
| ! | TCAAACAAATCCTTAGATTA+TGG | + | chr7_4:7042238-7042257 | None:intergenic | 25.0% |
| ! | ACTACATTATCCTTTATACT+CGG | + | chr7_4:7042650-7042669 | None:intergenic | 25.0% |
| ! | AACACATTATCCTTTATACT+CGG | + | chr7_4:7042795-7042814 | None:intergenic | 25.0% |
| ! | ACAACTCAAATGAAATAATG+TGG | + | chr7_4:7042678-7042697 | None:intergenic | 25.0% |
| !! | CAAAACAAAGAATAGTCTTA+CGG | - | chr7_4:7042865-7042884 | Msa1137980:intron | 25.0% |
| ! | GTAGAAAATATAAACACACT+TGG | + | chr7_4:7042987-7043006 | None:intergenic | 25.0% |
| ! | TTGATGAATACTGAAATTCA+AGG | + | chr7_4:7043117-7043136 | None:intergenic | 25.0% |
| !! | ATTCGGGTATTATAATTTTG+TGG | - | chr7_4:7043677-7043696 | Msa1137980:intron | 25.0% |
| !! | ATAATTTTGTGGTATACTTG+TGG | - | chr7_4:7043688-7043707 | Msa1137980:intron | 25.0% |
| ! | ATAAAATCTGTCTGTAAACA+TGG | + | chr7_4:7043808-7043827 | None:intergenic | 25.0% |
| ! | AAGCATAATGTGAATGAATA+AGG | + | chr7_4:7043942-7043961 | None:intergenic | 25.0% |
| ! | TATTGTAATAGTCTGTTTGT+TGG | + | chr7_4:7044171-7044190 | None:intergenic | 25.0% |
| ! | AAACAGACTATTACAATAAC+AGG | - | chr7_4:7044173-7044192 | Msa1137980:CDS | 25.0% |
| !! | TTACATTTTGTCACTATCTT+CGG | + | chr7_4:7044260-7044279 | None:intergenic | 25.0% |
| ! | TTTAATTGGAAATCTGCTAA+AGG | - | chr7_4:7044630-7044649 | Msa1137980:intron | 25.0% |
| ! | TTAATTGGAAATCTGCTAAA+GGG | - | chr7_4:7044631-7044650 | Msa1137980:intron | 25.0% |
| ! | AATCATATAGAATCTCACTT+TGG | + | chr7_4:7044657-7044676 | None:intergenic | 25.0% |
| !!! | TTACCGAACGTTTTAAAAAT+TGG | - | chr7_4:7044678-7044697 | Msa1137980:intron | 25.0% |
| !! | ATATTCAGGTTAAGAAAACA+AGG | + | chr7_4:7045089-7045108 | None:intergenic | 25.0% |
| ! | CATTATAGAAAGAAGATCAT+AGG | + | chr7_4:7045372-7045391 | None:intergenic | 25.0% |
| TTGCTTCCTACAAAACATTT+CGG | - | chr7_4:7042131-7042150 | Msa1137980:intron | 30.0% | |
| CTACATTATCCTTTATACTC+GGG | + | chr7_4:7042649-7042668 | None:intergenic | 30.0% | |
| ACACATTATCCTTTATACTC+GGG | + | chr7_4:7042794-7042813 | None:intergenic | 30.0% | |
| ATGAATACTGAAATTCAAGG+TGG | + | chr7_4:7043114-7043133 | None:intergenic | 30.0% | |
| ATTCATCAATATTCCGTAGA+AGG | - | chr7_4:7043128-7043147 | Msa1137980:CDS | 30.0% | |
| TTCATCAATATTCCGTAGAA+GGG | - | chr7_4:7043129-7043148 | Msa1137980:CDS | 30.0% | |
| AATTGAGTTCAAACATCAAG+TGG | + | chr7_4:7043607-7043626 | None:intergenic | 30.0% | |
| ! | CTCAATTTTGTACGAAATGT+AGG | - | chr7_4:7043620-7043639 | Msa1137980:intron | 30.0% |
| AACAATTAGTGCCAGTATTA+CGG | - | chr7_4:7043729-7043748 | Msa1137980:intron | 30.0% | |
| ! | GACAGATTTTATGTGTTTCA+CGG | - | chr7_4:7043816-7043835 | Msa1137980:intron | 30.0% |
| !! | TCAAAATTAAGGGTGTCTTA+GGG | + | chr7_4:7043877-7043896 | None:intergenic | 30.0% |
| GTAAAACGGCTCAAAATTAA+GGG | + | chr7_4:7043887-7043906 | None:intergenic | 30.0% | |
| TGTAAAACGGCTCAAAATTA+AGG | + | chr7_4:7043888-7043907 | None:intergenic | 30.0% | |
| TGTAATCACCATTATCATCT+TGG | - | chr7_4:7044275-7044294 | Msa1137980:intron | 30.0% | |
| ATATGCAACCAAGATGATAA+TGG | + | chr7_4:7044286-7044305 | None:intergenic | 30.0% | |
| !! | CTTTTTCACTGAATTGCTTT+TGG | - | chr7_4:7044380-7044399 | Msa1137980:intron | 30.0% |
| !!! | AACTCTTTTCTGGTTTGTAT+TGG | + | chr7_4:7044554-7044573 | None:intergenic | 30.0% |
| !!! | CGTCCAATTTTTAAAACGTT+CGG | + | chr7_4:7044684-7044703 | None:intergenic | 30.0% |
| !!! | CGAACGTTTTAAAAATTGGA+CGG | - | chr7_4:7044682-7044701 | Msa1137980:intron | 30.0% |
| !!! | GAACGTTTTAAAAATTGGAC+GGG | - | chr7_4:7044683-7044702 | Msa1137980:intron | 30.0% |
| ! | TGATTTAATCGGTTTAACCA+TGG | + | chr7_4:7044934-7044953 | None:intergenic | 30.0% |
| !! | TTTTACCCAATAAAGTGCTT+TGG | - | chr7_4:7045016-7045035 | Msa1137980:intron | 30.0% |
| ! | TTTACCCAATAAAGTGCTTT+GGG | - | chr7_4:7045017-7045036 | Msa1137980:intron | 30.0% |
| AAGATGACTACACTATATTC+AGG | + | chr7_4:7045103-7045122 | None:intergenic | 30.0% | |
| !!! | GTCATCTTTTAAGAAGTATC+TGG | - | chr7_4:7045115-7045134 | Msa1137980:intron | 30.0% |
| GAAAGAATTCTGATGAAAAG+GGG | + | chr7_4:7045164-7045183 | None:intergenic | 30.0% | |
| CGAAAGAATTCTGATGAAAA+GGG | + | chr7_4:7045165-7045184 | None:intergenic | 30.0% | |
| ACGAAAGAATTCTGATGAAA+AGG | + | chr7_4:7045166-7045185 | None:intergenic | 30.0% | |
| ! | GAATATGTTACTTGATCGTA+TGG | - | chr7_4:7045189-7045208 | Msa1137980:intron | 30.0% |
| CGTTTAATCACGAAAGATTA+TGG | + | chr7_4:7045596-7045615 | None:intergenic | 30.0% | |
| GTTCAAACTTACAATCATGA+TGG | + | chr7_4:7045736-7045755 | None:intergenic | 30.0% | |
| ! | AGAGGAGAAAAGTATAAATG+AGG | + | chr7_4:7045775-7045794 | None:intergenic | 30.0% |
| TTCAGATTGAATCTTTGTCA+TGG | - | chr7_4:7045826-7045845 | Msa1137980:intron | 30.0% | |
| GGTCAAACCTGATTATACAT+CGG | - | chr7_4:7041634-7041653 | Msa1137980:three_prime_UTR | 35.0% | |
| !!! | TGTTTTTGGGTTAGAGTTTG+TGG | - | chr7_4:7041838-7041857 | Msa1137980:intron | 35.0% |
| !!! | GTTTTTGGGTTAGAGTTTGT+GGG | - | chr7_4:7041839-7041858 | Msa1137980:intron | 35.0% |
| AAGAGTCTTAGACTGAAAGA+AGG | - | chr7_4:7041995-7042014 | Msa1137980:intron | 35.0% | |
| AGAGTCTTAGACTGAAAGAA+GGG | - | chr7_4:7041996-7042015 | Msa1137980:intron | 35.0% | |
| ATCCTCATAGTCATGTGTAT+AGG | - | chr7_4:7042091-7042110 | Msa1137980:intron | 35.0% | |
| TTCCTATACACATGACTATG+AGG | + | chr7_4:7042096-7042115 | None:intergenic | 35.0% | |
| GGTCAACCAATCAATAACTT+CGG | - | chr7_4:7042387-7042406 | Msa1137980:intron | 35.0% | |
| CAATCAATAACTTCGGATGA+CGG | - | chr7_4:7042394-7042413 | Msa1137980:intron | 35.0% | |
| TACTGAAATTCAAGGTGGAT+TGG | + | chr7_4:7043109-7043128 | None:intergenic | 35.0% | |
| TGACTCTTCATTCAAATGAC+TGG | + | chr7_4:7043332-7043351 | None:intergenic | 35.0% | |
| AAGTTACCTTCAAGACATGT+TGG | + | chr7_4:7043541-7043560 | None:intergenic | 35.0% | |
| AAATCTGTCTGTAAACATGG+AGG | + | chr7_4:7043805-7043824 | None:intergenic | 35.0% | |
| !! | CTCAAAATTAAGGGTGTCTT+AGG | + | chr7_4:7043878-7043897 | None:intergenic | 35.0% |
| AATATTACCTTCCCACAAAC+AGG | + | chr7_4:7044338-7044357 | None:intergenic | 35.0% | |
| TGGAAATGACTGATCAAAGT+TGG | + | chr7_4:7044534-7044553 | None:intergenic | 35.0% | |
| ! | GTAGAATTGGAACTCTTTTC+TGG | + | chr7_4:7044564-7044583 | None:intergenic | 35.0% |
| GATCTCACTAGTTCAATCTT+TGG | - | chr7_4:7044972-7044991 | Msa1137980:intron | 35.0% | |
| ! | TCTTCCCAAAGCACTTTATT+GGG | + | chr7_4:7045024-7045043 | None:intergenic | 35.0% |
| AAAACAAGGAATCCATGTAG+AGG | + | chr7_4:7045075-7045094 | None:intergenic | 35.0% | |
| CAGTGAACTACAATTGCATT+AGG | + | chr7_4:7045235-7045254 | None:intergenic | 35.0% | |
| CTAATGCAATTGTAGTTCAC+TGG | - | chr7_4:7045233-7045252 | Msa1137980:intron | 35.0% | |
| ! | TTTCGTTTTGCTTCTGTTGT+TGG | + | chr7_4:7045638-7045657 | None:intergenic | 35.0% |
| TTTCAGAGTTTGCCTTGTAA+TGG | - | chr7_4:7045856-7045875 | Msa1137980:intron | 35.0% | |
| GAAGAAATCCTTCCATTACA+AGG | + | chr7_4:7045871-7045890 | None:intergenic | 35.0% | |
| ATCAGGTTTGACCACTTTCA+TGG | + | chr7_4:7041627-7041646 | None:intergenic | 40.0% | |
| ACCTGATTATACATCGGAAC+TGG | - | chr7_4:7041640-7041659 | Msa1137980:three_prime_UTR | 40.0% | |
| TCCAGTTCCGATGTATAATC+AGG | + | chr7_4:7041644-7041663 | None:intergenic | 40.0% | |
| CTAAGTCCTTATCACCGTTA+CGG | - | chr7_4:7041699-7041718 | Msa1137980:three_prime_UTR | 40.0% | |
| CCATTCAGCATCACCAATAT+GGG | + | chr7_4:7041770-7041789 | None:intergenic | 40.0% | |
| !! | CCATATTGGTGATGCTGAAT+GGG | - | chr7_4:7041768-7041787 | Msa1137980:three_prime_UTR | 40.0% |
| GAGTCTTAGACTGAAAGAAG+GGG | - | chr7_4:7041997-7042016 | Msa1137980:intron | 40.0% | |
| TATAGGAACTGCGTTTGTGT+CGG | - | chr7_4:7042108-7042127 | Msa1137980:intron | 40.0% | |
| ! | CAACAGCCGAAATGTTTTGT+AGG | + | chr7_4:7042140-7042159 | None:intergenic | 40.0% |
| ! | GCTAATCTAGAACTTTGCTG+AGG | - | chr7_4:7042196-7042215 | Msa1137980:intron | 40.0% |
| CGTCATCCGAAGTTATTGAT+TGG | + | chr7_4:7042396-7042415 | None:intergenic | 40.0% | |
| CATAGATGAGAGAGAACGAA+GGG | + | chr7_4:7042541-7042560 | None:intergenic | 40.0% | |
| ACATAGATGAGAGAGAACGA+AGG | + | chr7_4:7042542-7042561 | None:intergenic | 40.0% | |
| TTGAACACTCCCGAGTATAA+AGG | - | chr7_4:7042637-7042656 | Msa1137980:intron | 40.0% | |
| TTGAACACTCCCGAGTATAA+AGG | - | chr7_4:7042637-7042656 | Msa1137980:intron | 40.0% | |
| ACTTGTTTCAAGACGTGAGA+AGG | - | chr7_4:7043303-7043322 | Msa1137980:intron | 40.0% | |
| CTTGTTTCAAGACGTGAGAA+GGG | - | chr7_4:7043304-7043323 | Msa1137980:intron | 40.0% | |
| ATGAAGAGTCAGAACCTCTA+AGG | - | chr7_4:7043341-7043360 | Msa1137980:intron | 40.0% | |
| TGAAGAGTCAGAACCTCTAA+GGG | - | chr7_4:7043342-7043361 | Msa1137980:intron | 40.0% | |
| AAAGAATCCACCGGAAAAGA+TGG | - | chr7_4:7043412-7043431 | Msa1137980:intron | 40.0% | |
| AAGAATCCACCGGAAAAGAT+GGG | - | chr7_4:7043413-7043432 | Msa1137980:intron | 40.0% | |
| ! | TTCCTTTGACCCATCTTTTC+CGG | + | chr7_4:7043425-7043444 | None:intergenic | 40.0% |
| TCGTCAGCAAAACTTACAAC+TGG | - | chr7_4:7043472-7043491 | Msa1137980:intron | 40.0% | |
| TGTGTATGCATCATCAGAAG+AGG | - | chr7_4:7043504-7043523 | Msa1137980:intron | 40.0% | |
| TGTTGTCCAACATGTCTTGA+AGG | - | chr7_4:7043532-7043551 | Msa1137980:intron | 40.0% | |
| ATTAGTGCCAGTATTACGGT+CGG | - | chr7_4:7043733-7043752 | Msa1137980:intron | 40.0% | |
| TGAGAACCTATGCAGTGTTT+GGG | + | chr7_4:7043768-7043787 | None:intergenic | 40.0% | |
| ATGAGAACCTATGCAGTGTT+TGG | + | chr7_4:7043769-7043788 | None:intergenic | 40.0% | |
| ACGGTACTATTGCATTGCAA+TGG | - | chr7_4:7043835-7043854 | Msa1137980:intron | 40.0% | |
| GGTCCTTGTTGCAAACAAAA+CGG | - | chr7_4:7044136-7044155 | Msa1137980:CDS | 40.0% | |
| !!! | CATCCGTTTTGTTTGCAACA+AGG | + | chr7_4:7044142-7044161 | None:intergenic | 40.0% |
| CTCTTCAGTGTATTCTGCAA+GGG | + | chr7_4:7044234-7044253 | None:intergenic | 40.0% | |
| TCTCTTCAGTGTATTCTGCA+AGG | + | chr7_4:7044235-7044254 | None:intergenic | 40.0% | |
| ATCTTGGTTGCATATACGAG+TGG | - | chr7_4:7044291-7044310 | Msa1137980:intron | 40.0% | |
| ATAGAGCACACAAAAGTCAG+TGG | - | chr7_4:7044419-7044438 | Msa1137980:intron | 40.0% | |
| TAGAGCACACAAAAGTCAGT+GGG | - | chr7_4:7044420-7044439 | Msa1137980:intron | 40.0% | |
| TAGCAAACTTACCAAGTCTC+TGG | - | chr7_4:7044486-7044505 | Msa1137980:intron | 40.0% | |
| CTTGTTCAACTGGTTGAATC+AGG | - | chr7_4:7044711-7044730 | Msa1137980:intron | 40.0% | |
| AGCTAGTTCGCCAATTGATT+TGG | - | chr7_4:7044738-7044757 | Msa1137980:intron | 40.0% | |
| ACAACCAGGACCAAATCAAT+TGG | + | chr7_4:7044751-7044770 | None:intergenic | 40.0% | |
| !! | TTGATTTGGTCCTGGTTGTA+TGG | - | chr7_4:7044752-7044771 | Msa1137980:intron | 40.0% |
| ! | ATCTGGATCTAGTTCAACCA+TGG | - | chr7_4:7044914-7044933 | Msa1137980:intron | 40.0% |
| CACTAGTTCAATCTTTGGTC+AGG | - | chr7_4:7044977-7044996 | Msa1137980:intron | 40.0% | |
| ! | CTCTTCCCAAAGCACTTTAT+TGG | + | chr7_4:7045025-7045044 | None:intergenic | 40.0% |
| !! | CAATAAAGTGCTTTGGGAAG+AGG | - | chr7_4:7045023-7045042 | Msa1137980:intron | 40.0% |
| GTTAATAGCACTCCTCTACA+TGG | - | chr7_4:7045060-7045079 | Msa1137980:intron | 40.0% | |
| TGATGAAAAGGGGAAATGAC+TGG | + | chr7_4:7045154-7045173 | None:intergenic | 40.0% | |
| TTTGTGGTAAGCATGTTCTG+AGG | - | chr7_4:7045434-7045453 | Msa1137980:intron | 40.0% | |
| ! | TCTTTCTTCCTTGCCAGTTT+TGG | + | chr7_4:7045799-7045818 | None:intergenic | 40.0% |
| ! | AGAGTTTGCCTTGTAATGGA+AGG | - | chr7_4:7045860-7045879 | Msa1137980:intron | 40.0% |
| !! | TATCTCGGGTTGGGAAAGAA+GGG | + | chr7_4:7041540-7041559 | None:intergenic | 45.0% |
| !! | TCTTCTCGCCTTTTCTGAAG+CGG | - | chr7_4:7041579-7041598 | Msa1137980:three_prime_UTR | 45.0% |
| ACATCGGAACTGGAGACAAT+TGG | - | chr7_4:7041650-7041669 | Msa1137980:three_prime_UTR | 45.0% | |
| ! | AGCATCACCAATATGGGTTG+CGG | + | chr7_4:7041764-7041783 | None:intergenic | 45.0% |
| !! | CCCATATTGGTGATGCTGAA+TGG | - | chr7_4:7041767-7041786 | Msa1137980:three_prime_UTR | 45.0% |
| CCCATTCAGCATCACCAATA+TGG | + | chr7_4:7041771-7041790 | None:intergenic | 45.0% | |
| !! | ATTGGTGATGCTGAATGGGA+TGG | - | chr7_4:7041772-7041791 | Msa1137980:three_prime_UTR | 45.0% |
| !! | TTGGTGATGCTGAATGGGAT+GGG | - | chr7_4:7041773-7041792 | Msa1137980:three_prime_UTR | 45.0% |
| CTTGACCCAATGCAATGCAA+CGG | - | chr7_4:7042325-7042344 | Msa1137980:intron | 45.0% | |
| TTGACCCAATGCAATGCAAC+GGG | - | chr7_4:7042326-7042345 | Msa1137980:intron | 45.0% | |
| CAAACCCGTTGCATTGCATT+GGG | + | chr7_4:7042333-7042352 | None:intergenic | 45.0% | |
| ! | TCTAAAATCCTTCTGGACCG+TGG | - | chr7_4:7042457-7042476 | Msa1137980:intron | 45.0% |
| ATGAGAGAGAACGAAGGGTA+GGG | + | chr7_4:7042536-7042555 | None:intergenic | 45.0% | |
| ! | GGTGCGTTGATGCATATTGA+AGG | + | chr7_4:7042928-7042947 | None:intergenic | 45.0% |
| ATTCCGTAGAAGGGAAATGC+AGG | - | chr7_4:7043138-7043157 | Msa1137980:CDS | 45.0% | |
| AGATATACCGTTCTCCTCCA+AGG | - | chr7_4:7043230-7043249 | Msa1137980:intron | 45.0% | |
| GGGTCTGCATCATAAGGTAA+CGG | + | chr7_4:7043256-7043275 | None:intergenic | 45.0% | |
| TACCTTATGATGCAGACCCT+AGG | - | chr7_4:7043257-7043276 | Msa1137980:intron | 45.0% | |
| !! | AGAACCTCTAAGGGTTGATG+TGG | - | chr7_4:7043351-7043370 | Msa1137980:intron | 45.0% |
| ACATCCACATCAACCCTTAG+AGG | + | chr7_4:7043358-7043377 | None:intergenic | 45.0% | |
| CCACTCGAACTCAAAGATTC+TGG | + | chr7_4:7043385-7043404 | None:intergenic | 45.0% | |
| ! | CCAGAATCTTTGAGTTCGAG+TGG | - | chr7_4:7043382-7043401 | Msa1137980:intron | 45.0% |
| ! | CTTTGAGTTCGAGTGGTAAG+TGG | - | chr7_4:7043389-7043408 | Msa1137980:intron | 45.0% |
| GGTAAGTGGAAAGAATCCAC+CGG | - | chr7_4:7043403-7043422 | Msa1137980:intron | 45.0% | |
| GTCTTACTGAGGACTTGGAA+CGG | + | chr7_4:7043450-7043469 | None:intergenic | 45.0% | |
| CGAAAGTCTTACTGAGGACT+TGG | + | chr7_4:7043455-7043474 | None:intergenic | 45.0% | |
| TGCTGACGAAAGTCTTACTG+AGG | + | chr7_4:7043461-7043480 | None:intergenic | 45.0% | |
| GTATGCATCATCAGAAGAGG+AGG | - | chr7_4:7043507-7043526 | Msa1137980:intron | 45.0% | |
| AGAACCTATGCAGTGTTTGG+GGG | + | chr7_4:7043766-7043785 | None:intergenic | 45.0% | |
| GAGAACCTATGCAGTGTTTG+GGG | + | chr7_4:7043767-7043786 | None:intergenic | 45.0% | |
| TGCAAAACACAGAAGGTGGT+GGG | + | chr7_4:7043996-7044015 | None:intergenic | 45.0% | |
| GATGTCCGCTAATAGATGGA+GGG | + | chr7_4:7044027-7044046 | None:intergenic | 45.0% | |
| TGACCCAAAAACTGGGATAC+CGG | + | chr7_4:7044056-7044075 | None:intergenic | 45.0% | |
| TGGTTGCATATACGAGTGGA+TGG | - | chr7_4:7044295-7044314 | Msa1137980:intron | 45.0% | |
| TGCACTCTTAACCAGAGACT+TGG | + | chr7_4:7044500-7044519 | None:intergenic | 45.0% | |
| ! | ACTGTTGGGACTGGTAGAAT+TGG | + | chr7_4:7044577-7044596 | None:intergenic | 45.0% |
| !! | TTCGCCAATTGATTTGGTCC+TGG | - | chr7_4:7044744-7044763 | Msa1137980:intron | 45.0% |
| AACGAATCGTGGTTCAACTC+TGG | + | chr7_4:7044801-7044820 | None:intergenic | 45.0% | |
| AGAGTTGAACCACGATTCGT+TGG | - | chr7_4:7044800-7044819 | Msa1137980:intron | 45.0% | |
| TTGAACCACGATTCGTTGGT+CGG | - | chr7_4:7044804-7044823 | Msa1137980:intron | 45.0% | |
| ! | CTTTTCTCCTCTGCCAAAAC+TGG | - | chr7_4:7045783-7045802 | Msa1137980:CDS | 45.0% |
| !! | ATCTCGGGTTGGGAAAGAAG+GGG | + | chr7_4:7041539-7041558 | None:intergenic | 50.0% |
| !! | CTATCTCGGGTTGGGAAAGA+AGG | + | chr7_4:7041541-7041560 | None:intergenic | 50.0% |
| CGAGGTAACTATCTCGGGTT+GGG | + | chr7_4:7041549-7041568 | None:intergenic | 50.0% | |
| ACGAGGTAACTATCTCGGGT+TGG | + | chr7_4:7041550-7041569 | None:intergenic | 50.0% | |
| ACCCGAGATAGTTACCTCGT+CGG | - | chr7_4:7041550-7041569 | Msa1137980:three_prime_UTR | 50.0% | |
| ACCCGACGAGGTAACTATCT+CGG | + | chr7_4:7041555-7041574 | None:intergenic | 50.0% | |
| CTCTGTAGCCGCTTCAGAAA+AGG | + | chr7_4:7041590-7041609 | None:intergenic | 50.0% | |
| GAAGAGGGTTGCCATGAAAG+TGG | - | chr7_4:7041613-7041632 | Msa1137980:three_prime_UTR | 50.0% | |
| CGGAACTGGAGACAATTGGT+CGG | - | chr7_4:7041654-7041673 | Msa1137980:three_prime_UTR | 50.0% | |
| AACTGGAGACAATTGGTCGG+TGG | - | chr7_4:7041657-7041676 | Msa1137980:three_prime_UTR | 50.0% | |
| ACAGAAGACGACACGGTTGA+AGG | + | chr7_4:7041728-7041747 | None:intergenic | 50.0% | |
| CGACACAACAGAAGACGACA+CGG | + | chr7_4:7041735-7041754 | None:intergenic | 50.0% | |
| ! | GATGCTGAATGGGATGGGTT+CGG | - | chr7_4:7041778-7041797 | Msa1137980:three_prime_UTR | 50.0% |
| CCAAACCCGTTGCATTGCAT+TGG | + | chr7_4:7042334-7042353 | None:intergenic | 50.0% | |
| ! | CCAATGCAATGCAACGGGTT+TGG | - | chr7_4:7042331-7042350 | Msa1137980:intron | 50.0% |
| CAGCAATCCACGCATTCATG+TGG | - | chr7_4:7042366-7042385 | Msa1137980:intron | 50.0% | |
| TGGTTGACCACATGAATGCG+TGG | + | chr7_4:7042376-7042395 | None:intergenic | 50.0% | |
| ACGAAGGGTAGGGTTGCATT+AGG | + | chr7_4:7042526-7042545 | None:intergenic | 50.0% | |
| GATGAGAGAGAACGAAGGGT+AGG | + | chr7_4:7042537-7042556 | None:intergenic | 50.0% | |
| GCGCTTCCTTCATCTGTACA+GGG | - | chr7_4:7043160-7043179 | Msa1137980:intron | 50.0% | |
| CGCTTCCTTCATCTGTACAG+GGG | - | chr7_4:7043161-7043180 | Msa1137980:intron | 50.0% | |
| GCTTCCTTCATCTGTACAGG+GGG | - | chr7_4:7043162-7043181 | Msa1137980:intron | 50.0% | |
| ! | TCATAAGGTAACGGCCTTGG+AGG | + | chr7_4:7043247-7043266 | None:intergenic | 50.0% |
| ! | GCATCATAAGGTAACGGCCT+TGG | + | chr7_4:7043250-7043269 | None:intergenic | 50.0% |
| TGCCTAGGGTCTGCATCATA+AGG | + | chr7_4:7043262-7043281 | None:intergenic | 50.0% | |
| CATTTCCGCTCACAGCATGA+CGG | - | chr7_4:7043280-7043299 | Msa1137980:intron | 50.0% | |
| ! | CTTTGACCCATCTTTTCCGG+TGG | + | chr7_4:7043422-7043441 | None:intergenic | 50.0% |
| CACCGGAAAAGATGGGTCAA+AGG | - | chr7_4:7043420-7043439 | Msa1137980:intron | 50.0% | |
| GAACCTATGCAGTGTTTGGG+GGG | + | chr7_4:7043765-7043784 | None:intergenic | 50.0% | |
| CTGTCTGTAAACATGGAGGC+TGG | + | chr7_4:7043801-7043820 | None:intergenic | 50.0% | |
| GTGCAAAACACAGAAGGTGG+TGG | + | chr7_4:7043997-7044016 | None:intergenic | 50.0% | |
| CTAATAGATGGAGGGAGAGG+CGG | + | chr7_4:7044019-7044038 | None:intergenic | 50.0% | |
| CCTCTCCCTCCATCTATTAG+CGG | - | chr7_4:7044019-7044038 | Msa1137980:CDS | 50.0% | |
| GGATGTCCGCTAATAGATGG+AGG | + | chr7_4:7044028-7044047 | None:intergenic | 50.0% | |
| GCAGGATGTCCGCTAATAGA+TGG | + | chr7_4:7044031-7044050 | None:intergenic | 50.0% | |
| ! | CACCCGGTATCCCAGTTTTT+GGG | - | chr7_4:7044050-7044069 | Msa1137980:CDS | 50.0% |
| GACCCAAAAACTGGGATACC+GGG | + | chr7_4:7044055-7044074 | None:intergenic | 50.0% | |
| AGTGACAGCTGTCCTGTTTG+TGG | - | chr7_4:7044323-7044342 | Msa1137980:intron | 50.0% | |
| GTGACAGCTGTCCTGTTTGT+GGG | - | chr7_4:7044324-7044343 | Msa1137980:intron | 50.0% | |
| !! | AAGTCAGTGGGCTGAGAAAC+AGG | - | chr7_4:7044432-7044451 | Msa1137980:intron | 50.0% |
| CGTCAGCACAGAACACTGTT+GGG | + | chr7_4:7044591-7044610 | None:intergenic | 50.0% | |
| !! | ACGGGACTAGCTTGTTCAAC+TGG | - | chr7_4:7044701-7044720 | Msa1137980:intron | 50.0% |
| GTATGGCAGTCTGGTCTAAG+AGG | - | chr7_4:7044769-7044788 | Msa1137980:intron | 50.0% | |
| !! | TTCCTTGCCAGTTTTGGCAG+AGG | + | chr7_4:7045793-7045812 | None:intergenic | 50.0% |
| CCCGACGAGGTAACTATCTC+GGG | + | chr7_4:7041554-7041573 | None:intergenic | 55.0% | |
| CCCGAGATAGTTACCTCGTC+GGG | - | chr7_4:7041551-7041570 | Msa1137980:three_prime_UTR | 55.0% | |
| CGAGAAGAAACAACCCGACG+AGG | + | chr7_4:7041567-7041586 | None:intergenic | 55.0% | |
| !! | TTCTGAAGCGGCTACAGAGC+AGG | - | chr7_4:7041591-7041610 | Msa1137980:three_prime_UTR | 55.0% |
| AGGCTGCCGTAACGGTGATA+AGG | + | chr7_4:7041708-7041727 | None:intergenic | 55.0% | |
| ACGGTTGAAGGCTGCCGTAA+CGG | + | chr7_4:7041716-7041735 | None:intergenic | 55.0% | |
| GTCACTGCCGCAACCCATAT+TGG | - | chr7_4:7041754-7041773 | Msa1137980:three_prime_UTR | 55.0% | |
| ATCAGTGACCACGGTCCAGA+AGG | + | chr7_4:7042468-7042487 | None:intergenic | 55.0% | |
| AGCCAGCACATCAGTGACCA+CGG | + | chr7_4:7042477-7042496 | None:intergenic | 55.0% | |
| !! | CACTGATGTGCTGGCTGTGT+CGG | - | chr7_4:7042481-7042500 | Msa1137980:intron | 55.0% |
| CTGTGTCGGATTGTGACAGC+AGG | - | chr7_4:7042495-7042514 | Msa1137980:intron | 55.0% | |
| GCGCCTGCATTTCCCTTCTA+CGG | + | chr7_4:7043144-7043163 | None:intergenic | 55.0% | |
| GGCGCTTCCTTCATCTGTAC+AGG | - | chr7_4:7043159-7043178 | Msa1137980:intron | 55.0% | |
| GTAACGGCCTTGGAGGAGAA+CGG | + | chr7_4:7043240-7043259 | None:intergenic | 55.0% | |
| GCTGTGAGCGGAAATGCCTA+GGG | + | chr7_4:7043276-7043295 | None:intergenic | 55.0% | |
| TGCTGTGAGCGGAAATGCCT+AGG | + | chr7_4:7043277-7043296 | None:intergenic | 55.0% | |
| CAAGTCCGTCATGCTGTGAG+CGG | + | chr7_4:7043288-7043307 | None:intergenic | 55.0% | |
| AGTGCCAGTATTACGGTCGG+TGG | - | chr7_4:7043736-7043755 | Msa1137980:intron | 55.0% | |
| GTGACCACCGACCGTAATAC+TGG | + | chr7_4:7043743-7043762 | None:intergenic | 55.0% | |
| TCACCCCCCAAACACTGCAT+AGG | - | chr7_4:7043759-7043778 | Msa1137980:intron | 55.0% | |
| !! | AAGGTGGTGGGTTCGCAACA+GGG | + | chr7_4:7043984-7044003 | None:intergenic | 55.0% |
| GCGGTGCAAAACACAGAAGG+TGG | + | chr7_4:7044000-7044019 | None:intergenic | 55.0% | |
| GAGGCGGTGCAAAACACAGA+AGG | + | chr7_4:7044003-7044022 | None:intergenic | 55.0% | |
| CCGCTAATAGATGGAGGGAG+AGG | + | chr7_4:7044022-7044041 | None:intergenic | 55.0% | |
| ! | ATTAGCGGACATCCTGCACC+CGG | - | chr7_4:7044034-7044053 | Msa1137980:CDS | 55.0% |
| AAAACTGGGATACCGGGTGC+AGG | + | chr7_4:7044049-7044068 | None:intergenic | 55.0% | |
| ! | GCACCCGGTATCCCAGTTTT+TGG | - | chr7_4:7044049-7044068 | Msa1137980:CDS | 55.0% |
| !!! | TCCCAGTTTTTGGGTCAGCG+AGG | - | chr7_4:7044059-7044078 | Msa1137980:intron | 55.0% |
| GCCTCGCTGACCCAAAAACT+GGG | + | chr7_4:7044063-7044082 | None:intergenic | 55.0% | |
| AGCCTCGCTGACCCAAAAAC+TGG | + | chr7_4:7044064-7044083 | None:intergenic | 55.0% | |
| CAGCTGTCCTGTTTGTGGGA+AGG | - | chr7_4:7044328-7044347 | Msa1137980:intron | 55.0% | |
| GCACAGAACACTGTTGGGAC+TGG | + | chr7_4:7044586-7044605 | None:intergenic | 55.0% | |
| GCGTCAGCACAGAACACTGT+TGG | + | chr7_4:7044592-7044611 | None:intergenic | 55.0% | |
| GTCCTGGTTGTATGGCAGTC+TGG | - | chr7_4:7044760-7044779 | Msa1137980:intron | 55.0% | |
| GACCAGACTGCCATACAACC+AGG | + | chr7_4:7044765-7044784 | None:intergenic | 55.0% | |
| ACCACGATTCGTTGGTCGGT+TGG | - | chr7_4:7044808-7044827 | Msa1137980:intron | 55.0% | |
| ACCAACCGACCAACGAATCG+TGG | + | chr7_4:7044812-7044831 | None:intergenic | 55.0% | |
| CTCCTCTGCCAAAACTGGCA+AGG | - | chr7_4:7045788-7045807 | Msa1137980:CDS | 55.0% | |
| AGCGGCTACAGAGCAGGAAG+AGG | - | chr7_4:7041597-7041616 | Msa1137980:three_prime_UTR | 60.0% | |
| GCGGCTACAGAGCAGGAAGA+GGG | - | chr7_4:7041598-7041617 | Msa1137980:three_prime_UTR | 60.0% | |
| GACCGTGGTCACTGATGTGC+TGG | - | chr7_4:7042472-7042491 | Msa1137980:intron | 60.0% | |
| GCTGCCCCCTGTACAGATGA+AGG | + | chr7_4:7043169-7043188 | None:intergenic | 60.0% | |
| !! | TGGTGGGTTCGCAACAGGGA+AGG | + | chr7_4:7043980-7043999 | None:intergenic | 60.0% |
| !! | GAAGGTGGTGGGTTCGCAAC+AGG | + | chr7_4:7043985-7044004 | None:intergenic | 60.0% |
| TTTGGGTCAGCGAGGCTCGT+TGG | - | chr7_4:7044067-7044086 | Msa1137980:intron | 60.0% | |
| GGGTCAGCGAGGCTCGTTGG+AGG | - | chr7_4:7044070-7044089 | Msa1137980:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 7041520 | 7045896 | 7041520 | ID=Msa1137980;Name=Msa1137980 |
| chr7_4 | mRNA | 7041520 | 7045896 | 7041520 | ID=Msa1137980-mRNA-1;Parent=Msa1137980;Name=Msa1137980-mRNA-1;_AED=0.08;_eAED=0.10;_QI=0|0.5|0.28|1|0.33|0.42|7|298|302 |
| chr7_4 | exon | 7041520 | 7041844 | 7041520 | ID=Msa1137980-mRNA-1:exon:1992;Parent=Msa1137980-mRNA-1 |
| chr7_4 | exon | 7043067 | 7043176 | 7043067 | ID=Msa1137980-mRNA-1:exon:1991;Parent=Msa1137980-mRNA-1 |
| chr7_4 | exon | 7043863 | 7044069 | 7043863 | ID=Msa1137980-mRNA-1:exon:1990;Parent=Msa1137980-mRNA-1 |
| chr7_4 | exon | 7044085 | 7044289 | 7044085 | ID=Msa1137980-mRNA-1:exon:1989;Parent=Msa1137980-mRNA-1 |
| chr7_4 | exon | 7045258 | 7045410 | 7045258 | ID=Msa1137980-mRNA-1:exon:1988;Parent=Msa1137980-mRNA-1 |
| chr7_4 | exon | 7045617 | 7045817 | 7045617 | ID=Msa1137980-mRNA-1:exon:1987;Parent=Msa1137980-mRNA-1 |
| chr7_4 | exon | 7045891 | 7045896 | 7045891 | ID=Msa1137980-mRNA-1:exon:1986;Parent=Msa1137980-mRNA-1 |
| chr7_4 | CDS | 7045891 | 7045896 | 7045891 | ID=Msa1137980-mRNA-1:cds;Parent=Msa1137980-mRNA-1 |
| chr7_4 | CDS | 7045617 | 7045817 | 7045617 | ID=Msa1137980-mRNA-1:cds;Parent=Msa1137980-mRNA-1 |
| chr7_4 | CDS | 7045258 | 7045410 | 7045258 | ID=Msa1137980-mRNA-1:cds;Parent=Msa1137980-mRNA-1 |
| chr7_4 | CDS | 7044085 | 7044289 | 7044085 | ID=Msa1137980-mRNA-1:cds;Parent=Msa1137980-mRNA-1 |
| chr7_4 | CDS | 7043863 | 7044069 | 7043863 | ID=Msa1137980-mRNA-1:cds;Parent=Msa1137980-mRNA-1 |
| chr7_4 | CDS | 7043067 | 7043176 | 7043067 | ID=Msa1137980-mRNA-1:cds;Parent=Msa1137980-mRNA-1 |
| chr7_4 | CDS | 7041818 | 7041844 | 7041818 | ID=Msa1137980-mRNA-1:cds;Parent=Msa1137980-mRNA-1 |
| chr7_4 | three_prime_UTR | 7041520 | 7041817 | 7041520 | ID=Msa1137980-mRNA-1:three_prime_utr;Parent=Msa1137980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
