AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0613290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0613290 MtrunA17_Chr4g0048391 99.320 588 4 0 1 588 1 588 0.0 1211
Msa0613290 MtrunA17_Chr8g0387211 83.390 590 77 3 3 588 1 573 0.0 1008
Msa0613290 MtrunA17_Chr1g0196061 53.765 571 259 1 23 588 11 581 0.0 647
Msa0613290 MtrunA17_Chr7g0251831 54.737 570 249 3 26 588 4 571 0.0 630
Msa0613290 MtrunA17_Chr5g0427061 51.042 576 273 4 21 588 42 616 0.0 559
Msa0613290 MtrunA17_Chr3g0133241 49.828 580 275 5 24 588 15 593 0.0 553
Msa0613290 MtrunA17_Chr5g0436511 32.323 594 369 13 15 588 2 582 1.46e-88 285
Msa0613290 MtrunA17_Chr3g0113151 30.664 587 371 10 28 588 17 593 8.79e-77 254
Msa0613290 MtrunA17_Chr8g0364131 28.777 556 321 14 50 588 9 506 1.01e-57 201
Msa0613290 MtrunA17_Chr5g0439771 52.427 103 44 1 54 151 17 119 7.12e-29 111
Msa0613290 MtrunA17_Chr2g0286991 23.562 539 304 16 26 539 11 466 1.60e-21 99.0
Msa0613290 MtrunA17_Chr1g0152951 24.632 475 247 18 19 475 57 438 3.51e-17 85.1
Msa0613290 MtrunA17_Chr4g0053361 23.503 451 254 18 18 428 38 437 2.59e-13 72.8
Msa0613290 MtrunA17_Chr7g0272131 25.512 537 311 23 18 521 38 518 3.35e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0613290 AT3G62980.1 56.460 565 241 1 26 585 9 573 0.0 639
Msa0613290 AT1G12820.1 54.181 574 252 3 26 588 4 577 0.0 632
Msa0613290 AT3G26810.1 54.450 573 250 4 26 588 4 575 0.0 623
Msa0613290 AT4G03190.1 52.734 567 264 1 26 588 5 571 0.0 603
Msa0613290 AT4G24390.2 51.313 571 265 4 28 588 56 623 0.0 578
Msa0613290 AT4G24390.1 51.313 571 265 4 28 588 56 623 0.0 578
Msa0613290 AT5G49980.1 50.687 582 278 4 15 588 39 619 0.0 566
Msa0613290 AT2G39940.1 31.952 579 368 9 28 588 18 588 4.30e-95 303
Msa0613290 AT4G15475.1 24.528 530 308 17 26 538 11 465 8.41e-22 100
Msa0613290 AT3G07550.1 24.122 427 224 18 11 416 2 349 1.94e-11 66.6
Msa0613290 AT3G07550.2 24.122 427 224 18 11 416 2 349 1.94e-11 66.6

Find 167 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACACCCTTTCTGGTTTA+TGG 0.081215 4_2:+62096619 Msa0613290:CDS
TCCAATGATGTAAAGCTTTC+TGG 0.105464 4_2:-62096357 None:intergenic
TCAACTTGGTTCCTGCAAAT+TGG 0.172792 4_2:+62094657 Msa0613290:CDS
AGAGAAAGAGCTTTGAAATT+AGG 0.185626 4_2:-62094800 None:intergenic
AGAAGTCTTCACACCCTTTC+TGG 0.194538 4_2:+62096612 Msa0613290:CDS
TCACACCCTTTCTGGTTTAT+GGG 0.221558 4_2:+62096620 Msa0613290:CDS
TTTGGTATTGGTTGAAATCT+AGG 0.226471 4_2:+62099452 Msa0613290:three_prime_UTR
CAACTTGGTTCCTGCAAATT+GGG 0.244113 4_2:+62094658 Msa0613290:CDS
AAAATCTTGTATTTGATTAC+AGG 0.250924 4_2:+62099312 Msa0613290:three_prime_UTR
GTCCTAATCTTCGACGCCTT+TGG 0.252400 4_2:+62096757 Msa0613290:CDS
CCATTGAATGCTACCGTATA+TGG 0.254145 4_2:+62098985 Msa0613290:three_prime_UTR
CCCAGAAAGCTTTACATCAT+TGG 0.287120 4_2:+62096356 Msa0613290:CDS
ATTATGAAGGCTCAATAATA+TGG 0.291004 4_2:+62099024 Msa0613290:three_prime_UTR
ACAATCAATAGCTACGTTTC+AGG 0.291369 4_2:-62099097 None:intergenic
TATGTTTATCGTTCTGTTGC+TGG 0.293070 4_2:+62097589 Msa0613290:CDS
TCCTAATCTTCGACGCCTTT+GGG 0.296633 4_2:+62096758 Msa0613290:CDS
AGTGTAACACTTCTTATGTT+TGG 0.320668 4_2:-62094608 None:intergenic
GAAAGAAAAGAAACTTCAAT+TGG 0.347122 4_2:-62094298 None:intergenic
GGCTGTTAGTGATGAAAGTT+TGG 0.351341 4_2:+62094757 Msa0613290:CDS
AATGGAGGTGCATCCCTTCT+TGG 0.351887 4_2:-62097613 None:intergenic
GTGTTGAAATATGTGTATTC+AGG 0.360970 4_2:+62099412 Msa0613290:three_prime_UTR
GCACACGGGGTTACTGAATC+AGG 0.363016 4_2:+62097001 Msa0613290:CDS
TTGATGACAAAAGTGGTAAT+TGG 0.369657 4_2:+62096322 Msa0613290:CDS
ACCTGACATTTGAGTATATA+GGG 0.370498 4_2:+62097269 Msa0613290:CDS
GGTTCACCCGTCTGGTAATC+TGG 0.376560 4_2:-62097169 None:intergenic
CCAATGATGTAAAGCTTTCT+GGG 0.380230 4_2:-62096356 None:intergenic
CAGCTCTGTGAGCTTGGTAC+TGG 0.385066 4_2:+62096525 Msa0613290:CDS
GTCTGGTAATCTGGCTGACC+AGG 0.389112 4_2:-62097160 None:intergenic
GAACCTATGGACGAGGCCTT+TGG 0.389930 4_2:+62097187 Msa0613290:CDS
AGACAGAAGCTCAGTTTCAT+TGG 0.392214 4_2:+62094487 Msa0613290:CDS
CTCCAAAGGCTTGCTGTGTC+AGG 0.396046 4_2:+62097235 Msa0613290:CDS
ACAGGATAATGAATGCTAGA+AGG 0.398073 4_2:+62099353 Msa0613290:three_prime_UTR
TATGCGCACTTTGCCATATA+CGG 0.408105 4_2:-62098998 None:intergenic
CGTCCATAGGTTCACCCGTC+TGG 0.415830 4_2:-62097177 None:intergenic
AATAGCTACGTTTCAGGCAT+TGG 0.416462 4_2:-62099091 None:intergenic
TTGAGGAGGGCGCTGCACAC+GGG 0.416863 4_2:+62096987 Msa0613290:CDS
ACACGTTCCAACACTTCATC+TGG 0.420875 4_2:-62094440 None:intergenic
ATATCAGCACCCCAATTTGC+AGG 0.422242 4_2:-62094668 None:intergenic
GTGTGCAGCGCCCTCCTCAA+AGG 0.422333 4_2:-62096984 None:intergenic
GAAGTGTTGGAACGTGTTCT+TGG 0.425811 4_2:+62094446 Msa0613290:CDS
CCAGTCCTTCGTTGAACCTC+AGG 0.429146 4_2:+62097662 Msa0613290:three_prime_UTR
AGAAGGAGGTGATGATAGTC+AGG 0.433187 4_2:+62097555 Msa0613290:CDS
AGCCTTAACTCTTCAAGAAA+AGG 0.433803 4_2:-62094725 None:intergenic
CGAAGTTTACATCATTGCTT+AGG 0.435730 4_2:-62096398 None:intergenic
ACCCAAAGGCGTCGAAGATT+AGG 0.441455 4_2:-62096759 None:intergenic
TGGATTTAGCACTGATGGCT+TGG 0.443514 4_2:+62094835 Msa0613290:CDS
GCTGCGAAAACTTGAGATAA+GGG 0.450178 4_2:+62097381 Msa0613290:CDS
TTTGAGGAGGGCGCTGCACA+CGG 0.456573 4_2:+62096986 Msa0613290:CDS
CCATATACGGTAGCATTCAA+TGG 0.457441 4_2:-62098985 None:intergenic
AGAGTTAAGGCTTAAGAGAA+TGG 0.457818 4_2:+62094736 Msa0613290:CDS
TTTCATTGGTATGCAAAGAA+TGG 0.457884 4_2:+62094501 Msa0613290:CDS
CTTGCCTTCTTTAGACCACT+TGG 0.458373 4_2:+62099214 Msa0613290:three_prime_UTR
CTTTGTTGGAAGACAAAACA+TGG 0.458729 4_2:+62094144 Msa0613290:five_prime_UTR
AACCTGACACAGCAAGCCTT+TGG 0.459468 4_2:-62097237 None:intergenic
GGGGTGCTGATATTCATTCA+TGG 0.461105 4_2:+62094678 Msa0613290:CDS
TGTGCAGCGCCCTCCTCAAA+GGG 0.461411 4_2:-62096983 None:intergenic
TTTCAGAGAGTGAGAACAAA+TGG 0.469459 4_2:-62097631 None:intergenic
GTTTACATCATTGCTTAGGT+TGG 0.470344 4_2:-62096394 None:intergenic
TCCCTATATACTCAAATGTC+AGG 0.472134 4_2:-62097270 None:intergenic
GCTCCTCAGCTCTGTGAGCT+TGG 0.474654 4_2:+62096519 Msa0613290:CDS
ATACATCAATGCAAAGGATA+AGG 0.474911 4_2:+62099131 Msa0613290:three_prime_UTR
AAAGAAAAGAAACTTCAATT+GGG 0.475303 4_2:-62094297 None:intergenic
CCCTCCTCAAAGGGATCCCC+AGG 0.475568 4_2:-62096974 None:intergenic
TGCTGATATTCATTCATGGT+TGG 0.476550 4_2:+62094682 Msa0613290:CDS
TTTGAAATTAGGAAAAGAAA+AGG 0.478989 4_2:-62094789 None:intergenic
GACTGCAAAGTGACGATGAA+TGG 0.480292 4_2:+62097478 Msa0613290:CDS
AAGCCTTTGGAGTTTAGTGC+AGG 0.480883 4_2:-62097224 None:intergenic
CGGCTCTGCATCATGACCCC+TGG 0.482603 4_2:+62097142 Msa0613290:CDS
AAGTGTTGGAACGTGTTCTT+GGG 0.483900 4_2:+62094447 Msa0613290:CDS
AGCTGCGAAAACTTGAGATA+AGG 0.491311 4_2:+62097380 Msa0613290:CDS
GTTGAAGTGATGCAGGAAGA+AGG 0.492159 4_2:+62097538 Msa0613290:CDS
AGATTTCAACCAATACCAAA+AGG 0.492810 4_2:-62099449 None:intergenic
CCTGGGGATCCCTTTGAGGA+GGG 0.495250 4_2:+62096974 Msa0613290:CDS
AACAGTAGCAACAGCAGCAT+TGG 0.495798 4_2:-62097089 None:intergenic
TGTTAGCACAAGAAAGGCCT+AGG 0.496849 4_2:+62097509 Msa0613290:CDS
TCATCTGACGGCAAAAGTAT+AGG 0.497985 4_2:-62097066 None:intergenic
AGCCGAAAATGAGTAAAGTC+GGG 0.498384 4_2:-62097124 None:intergenic
AAAGTCAGATTTGTGCATGC+AGG 0.502622 4_2:-62096675 None:intergenic
TTACCAGACGGGTGAACCTA+TGG 0.503626 4_2:+62097174 Msa0613290:CDS
GGGTTTATTGCTGTCTCTGA+AGG 0.505827 4_2:+62097022 Msa0613290:CDS
GAGATAAGGGACAGTCCATT+CGG 0.509689 4_2:+62097394 Msa0613290:CDS
GCTCCAAAGGCCTCGTCCAT+AGG 0.509988 4_2:-62097190 None:intergenic
CCTGAGGTTCAACGAAGGAC+TGG 0.510930 4_2:-62097662 None:intergenic
GACCTGACATTTGAGTATAT+AGG 0.511207 4_2:+62097268 Msa0613290:CDS
AATCTACGTGTCAAGATCTC+AGG 0.511329 4_2:-62094584 None:intergenic
GGTAGAGTGTAAGAGAAAGA+AGG 0.511569 4_2:+62094370 Msa0613290:CDS
CAGGATAATGAATGCTAGAA+GGG 0.514090 4_2:+62099354 Msa0613290:three_prime_UTR
TCCTGGGGATCCCTTTGAGG+AGG 0.517046 4_2:+62096973 Msa0613290:CDS
ATGAGAGTGATGATAGAGAA+AGG 0.518697 4_2:-62093976 None:intergenic
ATGGAAGATGGAAGGAAGAA+AGG 0.518814 4_2:+62099043 Msa0613290:three_prime_UTR
AACTTGGTTCCTGCAAATTG+GGG 0.521996 4_2:+62094659 Msa0613290:CDS
AGGCTCAATAATATGGAAGA+TGG 0.523275 4_2:+62099031 Msa0613290:three_prime_UTR
CTTAACTGAACTTGACATAC+AGG 0.524884 4_2:+62096290 Msa0613290:CDS
ATGAGTCAATGAGGTCACTT+TGG 0.525296 4_2:+62097449 Msa0613290:CDS
AAACTTGGAAACACTTTCAG+TGG 0.526917 4_2:+62097303 Msa0613290:CDS
TTGGGCAATGCAATGTGTAC+TGG 0.527001 4_2:+62097345 Msa0613290:CDS
TTCTGTTGCTGGACCAAGAA+GGG 0.527558 4_2:+62097600 Msa0613290:CDS
TGTGATGGATTTAGCACTGA+TGG 0.530648 4_2:+62094830 Msa0613290:CDS
GGAGGTGATGATAGTCAGGC+TGG 0.533488 4_2:+62097559 Msa0613290:CDS
GAGCCGAAAATGAGTAAAGT+CGG 0.533812 4_2:-62097125 None:intergenic
AGCAACCCATAAACCAGAAA+GGG 0.538248 4_2:-62096625 None:intergenic
ATAGGACGTAGTGTAGCTTC+CGG 0.538684 4_2:-62097048 None:intergenic
TTGCTGTCTCTGAAGGATGC+CGG 0.538728 4_2:+62097029 Msa0613290:CDS
TTGAACCTCAGGAAAGTCCT+TGG 0.539550 4_2:+62097673 Msa0613290:three_prime_UTR
TTATTGTGTGTCTCTCTCGC+CGG 0.542900 4_2:-62099158 None:intergenic
ATAAGAAGTGTTACACTGAA+AGG 0.544660 4_2:+62094614 Msa0613290:CDS
TGCTGCTGTTGCTACTGTTG+TGG 0.545043 4_2:+62097093 Msa0613290:CDS
GGTCTTAACAACTGCTCCAA+AGG 0.546055 4_2:-62097203 None:intergenic
ATCATATTGTCCATTGCTTG+AGG 0.546358 4_2:+62096937 Msa0613290:CDS
ATCTGATAAATAAGAAGATG+AGG 0.551841 4_2:-62094054 None:intergenic
CACAGTTGAAGACAAGGGAC+TGG 0.553399 4_2:+62096904 Msa0613290:CDS
GTAGATTGTTAGCACAAGAA+AGG 0.553487 4_2:+62097503 Msa0613290:CDS
AATGGTACAACGCTGAAAGA+TGG 0.557820 4_2:+62094519 Msa0613290:CDS
ATCAAAATGTCTTCAACATG+CGG 0.558575 4_2:-62099383 None:intergenic
GTTGAATGTTGAAGTGATGC+AGG 0.558963 4_2:+62097531 Msa0613290:CDS
GATGAGGTAGAAGAAGAAGA+AGG 0.560919 4_2:-62094038 None:intergenic
TAGAGACTAATCTCTCAAGC+TGG 0.561593 4_2:+62099570 Msa0613290:three_prime_UTR
GACAAGGGACTGGAAGCTGT+TGG 0.564143 4_2:+62096914 Msa0613290:CDS
TCTGGTAATCTGGCTGACCA+GGG 0.566207 4_2:-62097159 None:intergenic
CGCTCGAGAAACTTGTCGCT+AGG 0.566311 4_2:+62096424 Msa0613290:CDS
AAGTCAGATTTGTGCATGCA+GGG 0.569612 4_2:-62096674 None:intergenic
TGAGGAGGGCGCTGCACACG+GGG 0.570885 4_2:+62096988 Msa0613290:CDS
GGTTAACAAAAGCGTAACAC+TGG 0.573261 4_2:+62096470 Msa0613290:CDS
AAGCAACCCATAAACCAGAA+AGG 0.574385 4_2:-62096626 None:intergenic
AGCGAACAAGAAGCTTAGAA+AGG 0.582298 4_2:-62096734 None:intergenic
GCTCACAGAGCTGAGGAGCA+CGG 0.584117 4_2:-62096515 None:intergenic
GAACTTGACATACAGGAGAA+TGG 0.585101 4_2:+62096297 Msa0613290:CDS
GATTTCAACCAATACCAAAA+GGG 0.585529 4_2:-62099448 None:intergenic
GGGTCCAAGTGGTCTAAAGA+AGG 0.585601 4_2:-62099218 None:intergenic
AATGAGGTCACTTTGGATGT+CGG 0.587841 4_2:+62097456 Msa0613290:CDS
ACACGTAGCTCCTCAAGCAA+TGG 0.587975 4_2:-62096947 None:intergenic
ATGCAAAGGATAAGGAAGGC+CGG 0.589316 4_2:+62099139 Msa0613290:three_prime_UTR
CACACGGGGTTACTGAATCA+GGG 0.590850 4_2:+62097002 Msa0613290:CDS
TGCATGCAGGGTATAGAACT+TGG 0.591316 4_2:-62096662 None:intergenic
TCAATAATATGGAAGATGGA+AGG 0.592522 4_2:+62099035 Msa0613290:three_prime_UTR
GGTCAGCCAGATTACCAGAC+GGG 0.595288 4_2:+62097163 Msa0613290:CDS
AGTGCGCATACTGATTATGA+AGG 0.597755 4_2:+62099011 Msa0613290:three_prime_UTR
GTGTTGATACATCAATGCAA+AGG 0.602409 4_2:+62099125 Msa0613290:three_prime_UTR
AAAAGTGCGGCATTGCCGAA+TGG 0.605142 4_2:-62097409 None:intergenic
TTGACAAGTATGAGTCAATG+AGG 0.615233 4_2:+62097440 Msa0613290:CDS
CAGCAGCATTGGTCATCTGA+CGG 0.617061 4_2:-62097078 None:intergenic
ATCAATGCAAAGGATAAGGA+AGG 0.617513 4_2:+62099135 Msa0613290:three_prime_UTR
GTTCAACGAAGGACTGGAGA+TGG 0.620791 4_2:-62097656 None:intergenic
GTTGGAACGTGTTCTTGGGA+TGG 0.625125 4_2:+62094451 Msa0613290:CDS
TATGCTCCTCTTGACAGTGA+AGG 0.626044 4_2:+62096711 Msa0613290:CDS
GAAAGGCCTTCACTGTCAAG+AGG 0.633239 4_2:-62096717 None:intergenic
GATTACCAAGGACTTTCCTG+AGG 0.636248 4_2:-62097678 None:intergenic
GACGGGTGAACCTATGGACG+AGG 0.637310 4_2:+62097180 Msa0613290:CDS
GTACCAAGCTCACAGAGCTG+AGG 0.638389 4_2:-62096522 None:intergenic
CTGGTAATCTGGCTGACCAG+GGG 0.645030 4_2:-62097158 None:intergenic
GTTCTGTTGCTGGACCAAGA+AGG 0.646237 4_2:+62097599 Msa0613290:CDS
AGACCTGCACTAAACTCCAA+AGG 0.647440 4_2:+62097221 Msa0613290:CDS
GTCTCTACGATTGCGCACAA+AGG 0.648866 4_2:-62099554 None:intergenic
GCAATGCAATGTGTACTGGT+TGG 0.650372 4_2:+62097349 Msa0613290:CDS
AATGGCGTTGATGACAAAAG+TGG 0.653111 4_2:+62096315 Msa0613290:CDS
ATTGGACACAGTTGAAGACA+AGG 0.658409 4_2:+62096898 Msa0613290:CDS
CAGAGAGTGAGAACAAATGG+AGG 0.669946 4_2:-62097628 None:intergenic
TGGTCAGCCAGATTACCAGA+CGG 0.670071 4_2:+62097162 Msa0613290:CDS
ACAACGCTGAAAGATGGTCA+AGG 0.670965 4_2:+62094525 Msa0613290:CDS
GCCGAAAATGAGTAAAGTCG+GGG 0.679717 4_2:-62097123 None:intergenic
ATCACTTCAACATTCAACCT+AGG 0.683951 4_2:-62097526 None:intergenic
GAAGTGATGCAGGAAGAAGG+AGG 0.684299 4_2:+62097541 Msa0613290:CDS
GTCAAAACCAGACAAAAGTG+CGG 0.706806 4_2:-62097422 None:intergenic
AAGAGAAAGAAGGAATCACA+AGG 0.709198 4_2:+62094380 Msa0613290:CDS
ACTTTCCTGAGGTTCAACGA+AGG 0.724440 4_2:-62097667 None:intergenic
ACGCTGAAAGATGGTCAAGG+AGG 0.726925 4_2:+62094528 Msa0613290:CDS
TTGGACACAGTTGAAGACAA+GGG 0.735277 4_2:+62096899 Msa0613290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTATTT+CGG - chr4_2:62095509-62095528 None:intergenic 0.0%
!!! AATTTTATTTATCTAGAATT+AGG + chr4_2:62095557-62095576 Msa0613290:intron 10.0%
!! ATGATCTATATTATTCAAAT+CGG - chr4_2:62095253-62095272 None:intergenic 15.0%
!! AAGTCACATATATAATTAAT+TGG - chr4_2:62095868-62095887 None:intergenic 15.0%
!!! TTTAAGATAGTTTTAATGAA+AGG + chr4_2:62095887-62095906 Msa0613290:intron 15.0%
!! AACATTTATAAGGATTTAAT+TGG - chr4_2:62095983-62096002 None:intergenic 15.0%
!! GTAACTTCTTATATAATTAA+TGG - chr4_2:62097803-62097822 None:intergenic 15.0%
!!! AATTGTTGATTGTTAAAAAA+AGG + chr4_2:62097868-62097887 Msa0613290:intron 15.0%
!!! ATTGTTGATTGTTAAAAAAA+GGG + chr4_2:62097869-62097888 Msa0613290:intron 15.0%
!! ACAAAATTCTGAATATTTAT+AGG + chr4_2:62098070-62098089 Msa0613290:intron 15.0%
!! CAAAATTCTGAATATTTATA+GGG + chr4_2:62098071-62098090 Msa0613290:intron 15.0%
!!! TATGTGTTTTTTTACTACAA+AGG - chr4_2:62094182-62094201 None:intergenic 20.0%
!! GTACTAAACTAAAAAGTTTA+AGG - chr4_2:62094205-62094224 None:intergenic 20.0%
!! AAAGAAAAGAAACTTCAATT+GGG - chr4_2:62094300-62094319 None:intergenic 20.0%
!!! TTTCTTTTCTTTCTTCAAAA+GGG + chr4_2:62094308-62094327 Msa0613290:five_prime_UTR 20.0%
!!! TTTGAAATTAGGAAAAGAAA+AGG - chr4_2:62094792-62094811 None:intergenic 20.0%
!! CCAAAACTGAAAAATTAAAT+AGG - chr4_2:62094938-62094957 None:intergenic 20.0%
!!! CCTATTTAATTTTTCAGTTT+TGG + chr4_2:62094935-62094954 Msa0613290:intron 20.0%
!!! TAATTTTTCAGTTTTGGATT+TGG + chr4_2:62094941-62094960 Msa0613290:intron 20.0%
!!! TATTTGATTTATGATGTGTA+AGG + chr4_2:62094974-62094993 Msa0613290:intron 20.0%
!!! TTTTTATTTCGGCATAAATA+AGG - chr4_2:62095498-62095517 None:intergenic 20.0%
!!! TTTATTTATCTAGAATTAGG+TGG + chr4_2:62095560-62095579 Msa0613290:intron 20.0%
!! AAGTTTCACTAACATTTATA+AGG - chr4_2:62095993-62096012 None:intergenic 20.0%
!! TAATTATAGTGTGATGTATT+AGG + chr4_2:62096032-62096051 Msa0613290:intron 20.0%
!! AATTATAGTGTGATGTATTA+GGG + chr4_2:62096033-62096052 Msa0613290:intron 20.0%
!! CAATTCATTAAAAACTTTGA+AGG + chr4_2:62096449-62096468 Msa0613290:CDS 20.0%
!! CAAAACTGTGAATATTTATA+GGG - chr4_2:62097912-62097931 None:intergenic 20.0%
!! ACAAAACTGTGAATATTTAT+AGG - chr4_2:62097913-62097932 None:intergenic 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG - chr4_2:62097943-62097962 None:intergenic 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG - chr4_2:62097944-62097963 None:intergenic 20.0%
!!! ACATTTTTCTTAAGCATTTT+AGG + chr4_2:62097976-62097995 Msa0613290:intron 20.0%
!!! CATTTTTCTTAAGCATTTTA+GGG + chr4_2:62097977-62097996 Msa0613290:intron 20.0%
!! ACTAACCCTTAAAAAAATAA+TGG + chr4_2:62098106-62098125 Msa0613290:intron 20.0%
!!! GAAGTCCATTATTTTTTTAA+GGG - chr4_2:62098114-62098133 None:intergenic 20.0%
!!! TGAAGTCCATTATTTTTTTA+AGG - chr4_2:62098115-62098134 None:intergenic 20.0%
!! AGTACAGAAATATACAAAAA+GGG - chr4_2:62098473-62098492 None:intergenic 20.0%
!! AAGTACAGAAATATACAAAA+AGG - chr4_2:62098474-62098493 None:intergenic 20.0%
!! AAAATCTTGTATTTGATTAC+AGG + chr4_2:62099312-62099331 Msa0613290:three_prime_UTR 20.0%
!! CAAAAAGTTATTTAATTCAC+AGG + chr4_2:62099335-62099354 Msa0613290:three_prime_UTR 20.0%
! AGAAAGGTCAATGAAAAAAT+GGG - chr4_2:62093963-62093982 None:intergenic 25.0%
! ATCTGATAAATAAGAAGATG+AGG - chr4_2:62094057-62094076 None:intergenic 25.0%
!!! TCTTCATGTTTTTTCTTTGT+TGG + chr4_2:62094130-62094149 Msa0613290:five_prime_UTR 25.0%
! GAAAGAAAAGAAACTTCAAT+TGG - chr4_2:62094301-62094320 None:intergenic 25.0%
!! GTTTCTTTTCTTTCTTCAAA+AGG + chr4_2:62094307-62094326 Msa0613290:five_prime_UTR 25.0%
!!! TTTTGTTGTTTTGATGAACA+TGG + chr4_2:62094349-62094368 Msa0613290:exon 25.0%
! AGGTGAAAAAAACAATAACA+TGG + chr4_2:62094400-62094419 Msa0613290:CDS 25.0%
!! TTTTATATTTACTGCTGATG+AGG + chr4_2:62095066-62095085 Msa0613290:intron 25.0%
! ACTATATAACATCATCCAAA+AGG - chr4_2:62095159-62095178 None:intergenic 25.0%
!! CTTTTTCTTTTCTTGGATAA+AGG + chr4_2:62095653-62095672 Msa0613290:intron 25.0%
! GAAAATTATCATTCTTGCAA+AGG - chr4_2:62095696-62095715 None:intergenic 25.0%
! ATTATAGTGTGATGTATTAG+GGG + chr4_2:62096034-62096053 Msa0613290:intron 25.0%
! AGAAAATCTCTACAAAATAG+TGG - chr4_2:62096156-62096175 None:intergenic 25.0%
! ATCATCTTCTGAATATTACT+TGG + chr4_2:62096258-62096277 Msa0613290:intron 25.0%
!!! AGTTTTCGATTGGTTTTTTT+CGG + chr4_2:62096831-62096850 Msa0613290:intron 25.0%
! TATAATTAATGGAGTAGTTG+TGG - chr4_2:62097792-62097811 None:intergenic 25.0%
!! AATCAACAATTTGACTTAGA+AGG - chr4_2:62097859-62097878 None:intergenic 25.0%
!! TGCTGATGGAAAAATTTTAT+TGG + chr4_2:62098008-62098027 Msa0613290:intron 25.0%
!! GCTGATGGAAAAATTTTATT+GGG + chr4_2:62098009-62098028 Msa0613290:intron 25.0%
!!! ATGCTGATTGAAAATTTTGT+AGG + chr4_2:62098039-62098058 Msa0613290:intron 25.0%
!!! TGCTGATTGAAAATTTTGTA+GGG + chr4_2:62098040-62098059 Msa0613290:intron 25.0%
!!! TTAAGGGTTAGTTAAGTAAA+TGG - chr4_2:62098098-62098117 None:intergenic 25.0%
! AAAAAAAAAGTGATTGTTGC+CGG - chr4_2:62098144-62098163 None:intergenic 25.0%
! GTACAGAAATATACAAAAAG+GGG - chr4_2:62098472-62098491 None:intergenic 25.0%
! ATTATGAAGGCTCAATAATA+TGG + chr4_2:62099024-62099043 Msa0613290:three_prime_UTR 25.0%
!!! AACACTTGCATTATTTTTCT+TGG - chr4_2:62099245-62099264 None:intergenic 25.0%
!! ACAAGATTTTTCATGTCATT+TGG - chr4_2:62099302-62099321 None:intergenic 25.0%
GAGAAAGGTCAATGAAAAAA+TGG - chr4_2:62093964-62093983 None:intergenic 30.0%
!!! GTGTTTTTTTACTACAAAGG+TGG - chr4_2:62094179-62094198 None:intergenic 30.0%
TTTCATTGGTATGCAAAGAA+TGG + chr4_2:62094501-62094520 Msa0613290:CDS 30.0%
AGTGTAACACTTCTTATGTT+TGG - chr4_2:62094611-62094630 None:intergenic 30.0%
!! ATAAGAAGTGTTACACTGAA+AGG + chr4_2:62094614-62094633 Msa0613290:CDS 30.0%
AAGTTGAAATCAGAAAAACG+AGG - chr4_2:62094644-62094663 None:intergenic 30.0%
!! TCGTTTTTCTGATTTCAACT+TGG + chr4_2:62094643-62094662 Msa0613290:CDS 30.0%
! ATCCTTTTCTTGAAGAGTTA+AGG + chr4_2:62094723-62094742 Msa0613290:CDS 30.0%
!! TGATGAAAGTTTGGAGTTTT+TGG + chr4_2:62094766-62094785 Msa0613290:CDS 30.0%
!! AGAGAAAGAGCTTTGAAATT+AGG - chr4_2:62094803-62094822 None:intergenic 30.0%
AATGAGTAACATCATCAACT+TGG - chr4_2:62095114-62095133 None:intergenic 30.0%
!!! AAATTGTTGCTTTTGCCTTT+TGG + chr4_2:62095141-62095160 Msa0613290:intron 30.0%
GCACAGACAATTTATACAAA+GGG - chr4_2:62095227-62095246 None:intergenic 30.0%
AGCACAGACAATTTATACAA+AGG - chr4_2:62095228-62095247 None:intergenic 30.0%
ACAGTCAAGAAAACAGAAAA+AGG - chr4_2:62095290-62095309 None:intergenic 30.0%
ATTTGAGCATCAATTGAGAA+TGG + chr4_2:62095457-62095476 Msa0613290:intron 30.0%
TTTGAGCATCAATTGAGAAT+GGG + chr4_2:62095458-62095477 Msa0613290:intron 30.0%
AAAAGAAAAAGCAGCAAATC+AGG - chr4_2:62095644-62095663 None:intergenic 30.0%
!!! TTTGCTGCTTTTTCTTTTCT+TGG + chr4_2:62095646-62095665 Msa0613290:intron 30.0%
GTAGAGAAAATTTACACTTG+TGG - chr4_2:62095827-62095846 None:intergenic 30.0%
TTAATTGGTATTCAATGCCA+GGG - chr4_2:62095968-62095987 None:intergenic 30.0%
TTTAATTGGTATTCAATGCC+AGG - chr4_2:62095969-62095988 None:intergenic 30.0%
TTATAGTGTGATGTATTAGG+GGG + chr4_2:62096035-62096054 Msa0613290:intron 30.0%
AGCAACAAAATGCATCATAA+TGG - chr4_2:62096216-62096235 None:intergenic 30.0%
! TTGATGACAAAAGTGGTAAT+TGG + chr4_2:62096322-62096341 Msa0613290:CDS 30.0%
AGAAAGAAAATCATACCCAA+AGG - chr4_2:62096776-62096795 None:intergenic 30.0%
!!! TCGATTTTGAAGTTTTCGAT+TGG + chr4_2:62096821-62096840 Msa0613290:intron 30.0%
ACCTGACATTTGAGTATATA+GGG + chr4_2:62097269-62097288 Msa0613290:CDS 30.0%
!! ATAATGGACTTCATTACTAC+CGG + chr4_2:62098122-62098141 Msa0613290:intron 30.0%
TCGTATAAGTAAATGCTACT+TGG + chr4_2:62098255-62098274 Msa0613290:intron 30.0%
TTTACATAACTGAGAAGATG+TGG - chr4_2:62098316-62098335 None:intergenic 30.0%
CATCTTCTCAGTTATGTAAA+TGG + chr4_2:62098316-62098335 Msa0613290:intron 30.0%
TCTCATTAGAATAATGAGTC+AGG + chr4_2:62098512-62098531 Msa0613290:intron 30.0%
AGAAGTTGACGTTAATATAC+TGG - chr4_2:62098643-62098662 None:intergenic 30.0%
AGTATAAGAAAGGAAGAGAA+TGG - chr4_2:62098757-62098776 None:intergenic 30.0%
! GATAACTAACAGTAAGTTGA+GGG - chr4_2:62098797-62098816 None:intergenic 30.0%
TGAGATAAATTCAGTTAGAG+AGG - chr4_2:62098847-62098866 None:intergenic 30.0%
TCAATAATATGGAAGATGGA+AGG + chr4_2:62099035-62099054 Msa0613290:three_prime_UTR 30.0%
ATACATCAATGCAAAGGATA+AGG + chr4_2:62099131-62099150 Msa0613290:three_prime_UTR 30.0%
!! CTTGCATTATTTTTCTTGGT+GGG - chr4_2:62099241-62099260 None:intergenic 30.0%
!! ACTTGCATTATTTTTCTTGG+TGG - chr4_2:62099242-62099261 None:intergenic 30.0%
ATCAAAATGTCTTCAACATG+CGG - chr4_2:62099386-62099405 None:intergenic 30.0%
GTGTTGAAATATGTGTATTC+AGG + chr4_2:62099412-62099431 Msa0613290:three_prime_UTR 30.0%
! GAAAATACACTTTTCCCTTT+TGG + chr4_2:62099434-62099453 Msa0613290:three_prime_UTR 30.0%
GATTTCAACCAATACCAAAA+GGG - chr4_2:62099451-62099470 None:intergenic 30.0%
AGATTTCAACCAATACCAAA+AGG - chr4_2:62099452-62099471 None:intergenic 30.0%
!! TTTGGTATTGGTTGAAATCT+AGG + chr4_2:62099452-62099471 Msa0613290:three_prime_UTR 30.0%
ATGAGAGTGATGATAGAGAA+AGG - chr4_2:62093979-62093998 None:intergenic 35.0%
CTTTGTTGGAAGACAAAACA+TGG + chr4_2:62094144-62094163 Msa0613290:five_prime_UTR 35.0%
AAGAGAAAGAAGGAATCACA+AGG + chr4_2:62094380-62094399 Msa0613290:CDS 35.0%
! AGATTTTCCAGATGAAGTGT+TGG + chr4_2:62094433-62094452 Msa0613290:CDS 35.0%
! TCAAGGAGGAATGTTTTCAT+AGG + chr4_2:62094542-62094561 Msa0613290:CDS 35.0%
TGCTGATATTCATTCATGGT+TGG + chr4_2:62094682-62094701 Msa0613290:CDS 35.0%
AGCCTTAACTCTTCAAGAAA+AGG - chr4_2:62094728-62094747 None:intergenic 35.0%
AGAGTTAAGGCTTAAGAGAA+TGG + chr4_2:62094736-62094755 Msa0613290:CDS 35.0%
!!! CTTTCTCTTTTGAGTTGTGA+TGG + chr4_2:62094815-62094834 Msa0613290:CDS 35.0%
! TTTCTGTTTTCTTGACTGTC+TGG + chr4_2:62095291-62095310 Msa0613290:intron 35.0%
TTCACAAACATCTCACCAAT+GGG - chr4_2:62095357-62095376 None:intergenic 35.0%
ATTCACAAACATCTCACCAA+TGG - chr4_2:62095358-62095377 None:intergenic 35.0%
TTTGTGAATTATGTTGCCAG+TGG + chr4_2:62095369-62095388 Msa0613290:intron 35.0%
! CTCTCAAAATCACAGTTTTG+TGG - chr4_2:62095408-62095427 None:intergenic 35.0%
ATCAATTGAGAATGGGAACA+AGG + chr4_2:62095465-62095484 Msa0613290:intron 35.0%
TGTGTAAAAAATCTTTGCCC+TGG + chr4_2:62095948-62095967 Msa0613290:intron 35.0%
TCTGAATATTACTTGGATGC+AGG + chr4_2:62096265-62096284 Msa0613290:intron 35.0%
CTTAACTGAACTTGACATAC+AGG + chr4_2:62096290-62096309 Msa0613290:CDS 35.0%
CCAATGATGTAAAGCTTTCT+GGG - chr4_2:62096359-62096378 None:intergenic 35.0%
TCCAATGATGTAAAGCTTTC+TGG - chr4_2:62096360-62096379 None:intergenic 35.0%
GTTTACATCATTGCTTAGGT+TGG - chr4_2:62096397-62096416 None:intergenic 35.0%
CGAAGTTTACATCATTGCTT+AGG - chr4_2:62096401-62096420 None:intergenic 35.0%
ATCATATTGTCCATTGCTTG+AGG + chr4_2:62096937-62096956 Msa0613290:CDS 35.0%
GACCTGACATTTGAGTATAT+AGG + chr4_2:62097268-62097287 Msa0613290:CDS 35.0%
TCCCTATATACTCAAATGTC+AGG - chr4_2:62097273-62097292 None:intergenic 35.0%
! AGGGAAGTATGCTAAAAACT+TGG + chr4_2:62097288-62097307 Msa0613290:CDS 35.0%
AAACTTGGAAACACTTTCAG+TGG + chr4_2:62097303-62097322 Msa0613290:CDS 35.0%
TTGACAAGTATGAGTCAATG+AGG + chr4_2:62097440-62097459 Msa0613290:CDS 35.0%
GTAGATTGTTAGCACAAGAA+AGG + chr4_2:62097503-62097522 Msa0613290:CDS 35.0%
ATCACTTCAACATTCAACCT+AGG - chr4_2:62097529-62097548 None:intergenic 35.0%
TATGTTTATCGTTCTGTTGC+TGG + chr4_2:62097589-62097608 Msa0613290:CDS 35.0%
TTTCAGAGAGTGAGAACAAA+TGG - chr4_2:62097634-62097653 None:intergenic 35.0%
GATGTCATTCACACTTCATT+AGG - chr4_2:62097758-62097777 None:intergenic 35.0%
TTAGGGACTAAAAATGCTGA+TGG + chr4_2:62097994-62098013 Msa0613290:intron 35.0%
!! CATGCATTATCCACTTTTAG+AGG + chr4_2:62098225-62098244 Msa0613290:intron 35.0%
AATGGCAAAACACAACTTAC+AGG + chr4_2:62098334-62098353 Msa0613290:intron 35.0%
ATGGCAAAACACAACTTACA+GGG + chr4_2:62098335-62098354 Msa0613290:intron 35.0%
! ATGGTTGCAATTTTGTGAGA+GGG - chr4_2:62098388-62098407 None:intergenic 35.0%
AGAACTATTTGCAGAGAGAA+GGG - chr4_2:62098447-62098466 None:intergenic 35.0%
AAGAACTATTTGCAGAGAGA+AGG - chr4_2:62098448-62098467 None:intergenic 35.0%
AGCAAAAGTCATCACTTGTT+TGG - chr4_2:62098718-62098737 None:intergenic 35.0%
AGGAAGAGAATGGAATTACA+AGG - chr4_2:62098747-62098766 None:intergenic 35.0%
! GAGCTTAAGGAGTATAAGAA+AGG - chr4_2:62098767-62098786 None:intergenic 35.0%
! TAACAGTAAGTTGAGGGATA+CGG - chr4_2:62098791-62098810 None:intergenic 35.0%
GGATAACTAACAGTAAGTTG+AGG - chr4_2:62098798-62098817 None:intergenic 35.0%
ATTATAAAGCGCGACATAAG+TGG - chr4_2:62098953-62098972 None:intergenic 35.0%
AGGCTCAATAATATGGAAGA+TGG + chr4_2:62099031-62099050 Msa0613290:three_prime_UTR 35.0%
ACAATCAATAGCTACGTTTC+AGG - chr4_2:62099100-62099119 None:intergenic 35.0%
! GTGTTGATACATCAATGCAA+AGG + chr4_2:62099125-62099144 Msa0613290:three_prime_UTR 35.0%
ATCAATGCAAAGGATAAGGA+AGG + chr4_2:62099135-62099154 Msa0613290:three_prime_UTR 35.0%
ACAGGATAATGAATGCTAGA+AGG + chr4_2:62099353-62099372 Msa0613290:three_prime_UTR 35.0%
CAGGATAATGAATGCTAGAA+GGG + chr4_2:62099354-62099373 Msa0613290:three_prime_UTR 35.0%
! ACACTTTTCCCTTTTGGTAT+TGG + chr4_2:62099440-62099459 Msa0613290:three_prime_UTR 35.0%
GATGAGGTAGAAGAAGAAGA+AGG - chr4_2:62094041-62094060 None:intergenic 40.0%
GGTAGAGTGTAAGAGAAAGA+AGG + chr4_2:62094370-62094389 Msa0613290:CDS 40.0%
!! AAGTGTTGGAACGTGTTCTT+GGG + chr4_2:62094447-62094466 Msa0613290:CDS 40.0%
AGACAGAAGCTCAGTTTCAT+TGG + chr4_2:62094487-62094506 Msa0613290:CDS 40.0%
AATGGTACAACGCTGAAAGA+TGG + chr4_2:62094519-62094538 Msa0613290:CDS 40.0%
AATCTACGTGTCAAGATCTC+AGG - chr4_2:62094587-62094606 None:intergenic 40.0%
TCAACTTGGTTCCTGCAAAT+TGG + chr4_2:62094657-62094676 Msa0613290:CDS 40.0%
CAACTTGGTTCCTGCAAATT+GGG + chr4_2:62094658-62094677 Msa0613290:CDS 40.0%
AACTTGGTTCCTGCAAATTG+GGG + chr4_2:62094659-62094678 Msa0613290:CDS 40.0%
GGCTGTTAGTGATGAAAGTT+TGG + chr4_2:62094757-62094776 Msa0613290:CDS 40.0%
!! TGTGATGGATTTAGCACTGA+TGG + chr4_2:62094830-62094849 Msa0613290:CDS 40.0%
AAAAACAGAAGCTACGACGT+AGG + chr4_2:62095524-62095543 Msa0613290:intron 40.0%
AAAACAGAAGCTACGACGTA+GGG + chr4_2:62095525-62095544 Msa0613290:intron 40.0%
CATCTGAACACAGTACTTGA+AGG - chr4_2:62096063-62096082 None:intergenic 40.0%
GAACTTGACATACAGGAGAA+TGG + chr4_2:62096297-62096316 Msa0613290:CDS 40.0%
!! AATGGCGTTGATGACAAAAG+TGG + chr4_2:62096315-62096334 Msa0613290:CDS 40.0%
CCCAGAAAGCTTTACATCAT+TGG + chr4_2:62096356-62096375 Msa0613290:CDS 40.0%
! GGTTAACAAAAGCGTAACAC+TGG + chr4_2:62096470-62096489 Msa0613290:CDS 40.0%
! TCATTTTCACAAGAGCTGAC+AGG + chr4_2:62096549-62096568 Msa0613290:CDS 40.0%
!! TTCACACCCTTTCTGGTTTA+TGG + chr4_2:62096619-62096638 Msa0613290:CDS 40.0%
!! TCACACCCTTTCTGGTTTAT+GGG + chr4_2:62096620-62096639 Msa0613290:CDS 40.0%
AGCAACCCATAAACCAGAAA+GGG - chr4_2:62096628-62096647 None:intergenic 40.0%
AAGCAACCCATAAACCAGAA+AGG - chr4_2:62096629-62096648 None:intergenic 40.0%
AAGTCAGATTTGTGCATGCA+GGG - chr4_2:62096677-62096696 None:intergenic 40.0%
AAAGTCAGATTTGTGCATGC+AGG - chr4_2:62096678-62096697 None:intergenic 40.0%
AGCGAACAAGAAGCTTAGAA+AGG - chr4_2:62096737-62096756 None:intergenic 40.0%
TCGAATACACTTTCGTTAGC+AGG - chr4_2:62096859-62096878 None:intergenic 40.0%
TTCGAACATCTACCTTATGC+AGG + chr4_2:62096874-62096893 Msa0613290:intron 40.0%
CATCTACCTTATGCAGGTAT+TGG + chr4_2:62096880-62096899 Msa0613290:intron 40.0%
ATTGGACACAGTTGAAGACA+AGG + chr4_2:62096898-62096917 Msa0613290:CDS 40.0%
TTGGACACAGTTGAAGACAA+GGG + chr4_2:62096899-62096918 Msa0613290:CDS 40.0%
! TCATCTGACGGCAAAAGTAT+AGG - chr4_2:62097069-62097088 None:intergenic 40.0%
AGCCGAAAATGAGTAAAGTC+GGG - chr4_2:62097127-62097146 None:intergenic 40.0%
GAGCCGAAAATGAGTAAAGT+CGG - chr4_2:62097128-62097147 None:intergenic 40.0%
! TTTTGCTGGAAGCAGTGATT+GGG + chr4_2:62097327-62097346 Msa0613290:CDS 40.0%
! ATCTCAAGTTTTCGCAGCTT+CGG - chr4_2:62097379-62097398 None:intergenic 40.0%
AGCTGCGAAAACTTGAGATA+AGG + chr4_2:62097380-62097399 Msa0613290:CDS 40.0%
GCTGCGAAAACTTGAGATAA+GGG + chr4_2:62097381-62097400 Msa0613290:CDS 40.0%
GTCAAAACCAGACAAAAGTG+CGG - chr4_2:62097425-62097444 None:intergenic 40.0%
ATGAGTCAATGAGGTCACTT+TGG + chr4_2:62097449-62097468 Msa0613290:CDS 40.0%
! AATGAGGTCACTTTGGATGT+CGG + chr4_2:62097456-62097475 Msa0613290:CDS 40.0%
GTTGAATGTTGAAGTGATGC+AGG + chr4_2:62097531-62097550 Msa0613290:CDS 40.0%
!! AATTGAGAGCGTTACAGTCT+GGG - chr4_2:62098365-62098384 None:intergenic 40.0%
! GATGGTTGCAATTTTGTGAG+AGG - chr4_2:62098389-62098408 None:intergenic 40.0%
TCTGATCAACTCCATTGAGT+AGG + chr4_2:62098551-62098570 Msa0613290:intron 40.0%
TCAACTCCATTGAGTAGGAT+TGG + chr4_2:62098556-62098575 Msa0613290:intron 40.0%
TCAACTTCTCACGCAAAACA+TGG + chr4_2:62098654-62098673 Msa0613290:intron 40.0%
!! ATACTGACTTACCCTCTATC+TGG + chr4_2:62098883-62098902 Msa0613290:intron 40.0%
TAATGAAGCTGCCAGATAGA+GGG - chr4_2:62098897-62098916 None:intergenic 40.0%
CCATATACGGTAGCATTCAA+TGG - chr4_2:62098988-62099007 None:intergenic 40.0%
CCATTGAATGCTACCGTATA+TGG + chr4_2:62098985-62099004 Msa0613290:three_prime_UTR 40.0%
TATGCGCACTTTGCCATATA+CGG - chr4_2:62099001-62099020 None:intergenic 40.0%
! AGTGCGCATACTGATTATGA+AGG + chr4_2:62099011-62099030 Msa0613290:three_prime_UTR 40.0%
ATGGAAGATGGAAGGAAGAA+AGG + chr4_2:62099043-62099062 Msa0613290:three_prime_UTR 40.0%
AATAGCTACGTTTCAGGCAT+TGG - chr4_2:62099094-62099113 None:intergenic 40.0%
ACACGTTCCAACACTTCATC+TGG - chr4_2:62094443-62094462 None:intergenic 45.0%
!! GAAGTGTTGGAACGTGTTCT+TGG + chr4_2:62094446-62094465 Msa0613290:CDS 45.0%
ACAACGCTGAAAGATGGTCA+AGG + chr4_2:62094525-62094544 Msa0613290:CDS 45.0%
ATATCAGCACCCCAATTTGC+AGG - chr4_2:62094671-62094690 None:intergenic 45.0%
!! GGGGTGCTGATATTCATTCA+TGG + chr4_2:62094678-62094697 Msa0613290:CDS 45.0%
!! TGGATTTAGCACTGATGGCT+TGG + chr4_2:62094835-62094854 Msa0613290:CDS 45.0%
! GCATCGATGCAATTTCCCAT+TGG + chr4_2:62095339-62095358 Msa0613290:intron 45.0%
TGGTCAGATTCTGTTTCCAC+TGG - chr4_2:62095388-62095407 None:intergenic 45.0%
TACCTTAGCAGTCCAGAATG+AGG + chr4_2:62095587-62095606 Msa0613290:intron 45.0%
ATCCTCATTCTGGACTGCTA+AGG - chr4_2:62095592-62095611 None:intergenic 45.0%
GTCCAGAATGAGGATAGAGT+TGG + chr4_2:62095597-62095616 Msa0613290:intron 45.0%
AGCCAACTCTATCCTCATTC+TGG - chr4_2:62095602-62095621 None:intergenic 45.0%
AGAAGTCTTCACACCCTTTC+TGG + chr4_2:62096612-62096631 Msa0613290:CDS 45.0%
TGCATGCAGGGTATAGAACT+TGG - chr4_2:62096665-62096684 None:intergenic 45.0%
TATGCTCCTCTTGACAGTGA+AGG + chr4_2:62096711-62096730 Msa0613290:CDS 45.0%
TCCTAATCTTCGACGCCTTT+GGG + chr4_2:62096758-62096777 Msa0613290:CDS 45.0%
CTGTGTCCAATACCTGCATA+AGG - chr4_2:62096889-62096908 None:intergenic 45.0%
! AGGAGCTACGTGTTTTTCCT+GGG + chr4_2:62096957-62096976 Msa0613290:CDS 45.0%
GGGTTTATTGCTGTCTCTGA+AGG + chr4_2:62097022-62097041 Msa0613290:CDS 45.0%
ATAGGACGTAGTGTAGCTTC+CGG - chr4_2:62097051-62097070 None:intergenic 45.0%
AACAGTAGCAACAGCAGCAT+TGG - chr4_2:62097092-62097111 None:intergenic 45.0%
! GCCCCGACTTTACTCATTTT+CGG + chr4_2:62097122-62097141 Msa0613290:CDS 45.0%
GCCGAAAATGAGTAAAGTCG+GGG - chr4_2:62097126-62097145 None:intergenic 45.0%
GGTCTTAACAACTGCTCCAA+AGG - chr4_2:62097206-62097225 None:intergenic 45.0%
AGACCTGCACTAAACTCCAA+AGG + chr4_2:62097221-62097240 Msa0613290:CDS 45.0%
!! AAGCCTTTGGAGTTTAGTGC+AGG - chr4_2:62097227-62097246 None:intergenic 45.0%
! ACACTTTCAGTGGCTTTTGC+TGG + chr4_2:62097313-62097332 Msa0613290:CDS 45.0%
! CTTTTGCTGGAAGCAGTGAT+TGG + chr4_2:62097326-62097345 Msa0613290:CDS 45.0%
TTGGGCAATGCAATGTGTAC+TGG + chr4_2:62097345-62097364 Msa0613290:CDS 45.0%
! GCAATGCAATGTGTACTGGT+TGG + chr4_2:62097349-62097368 Msa0613290:CDS 45.0%
GAGATAAGGGACAGTCCATT+CGG + chr4_2:62097394-62097413 Msa0613290:CDS 45.0%
GACTGCAAAGTGACGATGAA+TGG + chr4_2:62097478-62097497 Msa0613290:CDS 45.0%
TGTTAGCACAAGAAAGGCCT+AGG + chr4_2:62097509-62097528 Msa0613290:CDS 45.0%
GTTGAAGTGATGCAGGAAGA+AGG + chr4_2:62097538-62097557 Msa0613290:CDS 45.0%
AGAAGGAGGTGATGATAGTC+AGG + chr4_2:62097555-62097574 Msa0613290:CDS 45.0%
TTCTGTTGCTGGACCAAGAA+GGG + chr4_2:62097600-62097619 Msa0613290:CDS 45.0%
CAGAGAGTGAGAACAAATGG+AGG - chr4_2:62097631-62097650 None:intergenic 45.0%
ACTTTCCTGAGGTTCAACGA+AGG - chr4_2:62097670-62097689 None:intergenic 45.0%
TTGAACCTCAGGAAAGTCCT+TGG + chr4_2:62097673-62097692 Msa0613290:three_prime_UTR 45.0%
GATTACCAAGGACTTTCCTG+AGG - chr4_2:62097681-62097700 None:intergenic 45.0%
GAGAGAGAGAGAGATTACCA+AGG - chr4_2:62097693-62097712 None:intergenic 45.0%
! CGATCATGCACCTCTAAAAG+TGG - chr4_2:62098238-62098257 None:intergenic 45.0%
!! GAATTGAGAGCGTTACAGTC+TGG - chr4_2:62098366-62098385 None:intergenic 45.0%
AGAAGGGAGGGAACTTGAAA+TGG - chr4_2:62098431-62098450 None:intergenic 45.0%
CTATTTGCAGAGAGAAGGGA+GGG - chr4_2:62098443-62098462 None:intergenic 45.0%
ACTATTTGCAGAGAGAAGGG+AGG - chr4_2:62098444-62098463 None:intergenic 45.0%
AGTGAGCCAATCCTACTCAA+TGG - chr4_2:62098565-62098584 None:intergenic 45.0%
AGAGGAGCTGAGAATCTAGA+GGG - chr4_2:62098829-62098848 None:intergenic 45.0%
GAGGGTAAGTCAGTATAGCA+TGG - chr4_2:62098879-62098898 None:intergenic 45.0%
GTAATGAAGCTGCCAGATAG+AGG - chr4_2:62098898-62098917 None:intergenic 45.0%
ATGCAAAGGATAAGGAAGGC+CGG + chr4_2:62099139-62099158 Msa0613290:three_prime_UTR 45.0%
TTATTGTGTGTCTCTCTCGC+CGG - chr4_2:62099161-62099180 None:intergenic 45.0%
CTTGCCTTCTTTAGACCACT+TGG + chr4_2:62099214-62099233 Msa0613290:three_prime_UTR 45.0%
!! TTTTTCTTGGTGGGTCCAAG+TGG - chr4_2:62099232-62099251 None:intergenic 45.0%
GTTGGAACGTGTTCTTGGGA+TGG + chr4_2:62094451-62094470 Msa0613290:CDS 50.0%
ACGCTGAAAGATGGTCAAGG+AGG + chr4_2:62094528-62094547 Msa0613290:CDS 50.0%
CGATGCACGACACGTTCAAA+TGG - chr4_2:62095325-62095344 None:intergenic 50.0%
GAAAGGCCTTCACTGTCAAG+AGG - chr4_2:62096720-62096739 None:intergenic 50.0%
GTCCTAATCTTCGACGCCTT+TGG + chr4_2:62096757-62096776 Msa0613290:CDS 50.0%
!! ACCCAAAGGCGTCGAAGATT+AGG - chr4_2:62096762-62096781 None:intergenic 50.0%
CACAGTTGAAGACAAGGGAC+TGG + chr4_2:62096904-62096923 Msa0613290:CDS 50.0%
ACACGTAGCTCCTCAAGCAA+TGG - chr4_2:62096950-62096969 None:intergenic 50.0%
! GAGGAGCTACGTGTTTTTCC+TGG + chr4_2:62096956-62096975 Msa0613290:CDS 50.0%
! GGAGCTACGTGTTTTTCCTG+GGG + chr4_2:62096958-62096977 Msa0613290:CDS 50.0%
! TTTTCCTGGGGATCCCTTTG+AGG + chr4_2:62096970-62096989 Msa0613290:CDS 50.0%
CACACGGGGTTACTGAATCA+GGG + chr4_2:62097002-62097021 Msa0613290:CDS 50.0%
! TTGCTGTCTCTGAAGGATGC+CGG + chr4_2:62097029-62097048 Msa0613290:CDS 50.0%
!! CAGCAGCATTGGTCATCTGA+CGG - chr4_2:62097081-62097100 None:intergenic 50.0%
TGCTGCTGTTGCTACTGTTG+TGG + chr4_2:62097093-62097112 Msa0613290:CDS 50.0%
TCTGGTAATCTGGCTGACCA+GGG - chr4_2:62097162-62097181 None:intergenic 50.0%
TGGTCAGCCAGATTACCAGA+CGG + chr4_2:62097162-62097181 Msa0613290:CDS 50.0%
TTACCAGACGGGTGAACCTA+TGG + chr4_2:62097174-62097193 Msa0613290:CDS 50.0%
AACCTGACACAGCAAGCCTT+TGG - chr4_2:62097240-62097259 None:intergenic 50.0%
! AAAAGTGCGGCATTGCCGAA+TGG - chr4_2:62097412-62097431 None:intergenic 50.0%
GAAGTGATGCAGGAAGAAGG+AGG + chr4_2:62097541-62097560 Msa0613290:CDS 50.0%
GTTCTGTTGCTGGACCAAGA+AGG + chr4_2:62097599-62097618 Msa0613290:CDS 50.0%
! AATGGAGGTGCATCCCTTCT+TGG - chr4_2:62097616-62097635 None:intergenic 50.0%
GTTCAACGAAGGACTGGAGA+TGG - chr4_2:62097659-62097678 None:intergenic 50.0%
GTGAGTGTGGATGAGAAGCT+GGG - chr4_2:62098294-62098313 None:intergenic 50.0%
CTGAGAAGATGTGGTGAGTG+TGG - chr4_2:62098307-62098326 None:intergenic 50.0%
GGTGCACTTGTATGACTGGA+TGG - chr4_2:62098407-62098426 None:intergenic 50.0%
! TGGTGGTGCACTTGTATGAC+TGG - chr4_2:62098411-62098430 None:intergenic 50.0%
AGGGAGGGAACTTGAAATGG+TGG - chr4_2:62098428-62098447 None:intergenic 50.0%
TGAGGGATACGGAGAGCTTA+AGG - chr4_2:62098780-62098799 None:intergenic 50.0%
AGAATCTAGAGGGCAAGGCA+AGG - chr4_2:62098819-62098838 None:intergenic 50.0%
AGCTGAGAATCTAGAGGGCA+AGG - chr4_2:62098824-62098843 None:intergenic 50.0%
GAGAGGAGCTGAGAATCTAG+AGG - chr4_2:62098830-62098849 None:intergenic 50.0%
GGGTCCAAGTGGTCTAAAGA+AGG - chr4_2:62099221-62099240 None:intergenic 50.0%
GTCTCTACGATTGCGCACAA+AGG - chr4_2:62099557-62099576 None:intergenic 50.0%
CGCTCGAGAAACTTGTCGCT+AGG + chr4_2:62096424-62096443 Msa0613290:CDS 55.0%
GTACCAAGCTCACAGAGCTG+AGG - chr4_2:62096525-62096544 None:intergenic 55.0%
CAGCTCTGTGAGCTTGGTAC+TGG + chr4_2:62096525-62096544 Msa0613290:CDS 55.0%
GACAAGGGACTGGAAGCTGT+TGG + chr4_2:62096914-62096933 Msa0613290:CDS 55.0%
GCACACGGGGTTACTGAATC+AGG + chr4_2:62097001-62097020 Msa0613290:CDS 55.0%
CTGGTAATCTGGCTGACCAG+GGG - chr4_2:62097161-62097180 None:intergenic 55.0%
GTCTGGTAATCTGGCTGACC+AGG - chr4_2:62097163-62097182 None:intergenic 55.0%
GGTCAGCCAGATTACCAGAC+GGG + chr4_2:62097163-62097182 Msa0613290:CDS 55.0%
GGTTCACCCGTCTGGTAATC+TGG - chr4_2:62097172-62097191 None:intergenic 55.0%
GAACCTATGGACGAGGCCTT+TGG + chr4_2:62097187-62097206 Msa0613290:CDS 55.0%
!! CTCCAAAGGCTTGCTGTGTC+AGG + chr4_2:62097235-62097254 Msa0613290:CDS 55.0%
! GGCAATGCCGCACTTTTGTC+TGG + chr4_2:62097415-62097434 Msa0613290:CDS 55.0%
GGAGGTGATGATAGTCAGGC+TGG + chr4_2:62097559-62097578 Msa0613290:CDS 55.0%
CCTGAGGTTCAACGAAGGAC+TGG - chr4_2:62097665-62097684 None:intergenic 55.0%
CCAGTCCTTCGTTGAACCTC+AGG + chr4_2:62097662-62097681 Msa0613290:three_prime_UTR 55.0%
GGTGAGTGTGGATGAGAAGC+TGG - chr4_2:62098295-62098314 None:intergenic 55.0%
!! TGAGAGCGTTACAGTCTGGG+AGG - chr4_2:62098362-62098381 None:intergenic 55.0%
GCTCACAGAGCTGAGGAGCA+CGG - chr4_2:62096518-62096537 None:intergenic 60.0%
GCTCCTCAGCTCTGTGAGCT+TGG + chr4_2:62096519-62096538 Msa0613290:CDS 60.0%
! TCCTGGGGATCCCTTTGAGG+AGG + chr4_2:62096973-62096992 Msa0613290:CDS 60.0%
! CCTGGGGATCCCTTTGAGGA+GGG + chr4_2:62096974-62096993 Msa0613290:CDS 60.0%
TGTGCAGCGCCCTCCTCAAA+GGG - chr4_2:62096986-62097005 None:intergenic 60.0%
!! TTTGAGGAGGGCGCTGCACA+CGG + chr4_2:62096986-62097005 Msa0613290:CDS 60.0%
CGTCCATAGGTTCACCCGTC+TGG - chr4_2:62097180-62097199 None:intergenic 60.0%
GACGGGTGAACCTATGGACG+AGG + chr4_2:62097180-62097199 Msa0613290:CDS 60.0%
GCTCCAAAGGCCTCGTCCAT+AGG - chr4_2:62097193-62097212 None:intergenic 60.0%
CCCTCCTCAAAGGGATCCCC+AGG - chr4_2:62096977-62096996 None:intergenic 65.0%
GTGTGCAGCGCCCTCCTCAA+AGG - chr4_2:62096987-62097006 None:intergenic 65.0%
!! TTGAGGAGGGCGCTGCACAC+GGG + chr4_2:62096987-62097006 Msa0613290:CDS 65.0%
CGGCTCTGCATCATGACCCC+TGG + chr4_2:62097142-62097161 Msa0613290:CDS 65.0%
!! TGAGGAGGGCGCTGCACACG+GGG + chr4_2:62096988-62097007 Msa0613290:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 62093930 62099592 62093930 ID=Msa0613290;Name=Msa0613290
chr4_2 mRNA 62093930 62099592 62093930 ID=Msa0613290-mRNA-1;Parent=Msa0613290;Name=Msa0613290-mRNA-1;_AED=0.01;_eAED=0.01;_QI=432|1|1|1|0.66|0.5|4|651|588
chr4_2 exon 62093930 62094879 62093930 ID=Msa0613290-mRNA-1:exon:17007;Parent=Msa0613290-mRNA-1
chr4_2 exon 62096287 62096779 62096287 ID=Msa0613290-mRNA-1:exon:17008;Parent=Msa0613290-mRNA-1
chr4_2 exon 62096896 62097694 62096896 ID=Msa0613290-mRNA-1:exon:17009;Parent=Msa0613290-mRNA-1
chr4_2 exon 62098985 62099592 62098985 ID=Msa0613290-mRNA-1:exon:17010;Parent=Msa0613290-mRNA-1
chr4_2 five_prime_UTR 62093930 62094361 62093930 ID=Msa0613290-mRNA-1:five_prime_utr;Parent=Msa0613290-mRNA-1
chr4_2 CDS 62094362 62094879 62094362 ID=Msa0613290-mRNA-1:cds;Parent=Msa0613290-mRNA-1
chr4_2 CDS 62096287 62096779 62096287 ID=Msa0613290-mRNA-1:cds;Parent=Msa0613290-mRNA-1
chr4_2 CDS 62096896 62097651 62096896 ID=Msa0613290-mRNA-1:cds;Parent=Msa0613290-mRNA-1
chr4_2 three_prime_UTR 62097652 62097694 62097652 ID=Msa0613290-mRNA-1:three_prime_utr;Parent=Msa0613290-mRNA-1
chr4_2 three_prime_UTR 62098985 62099592 62098985 ID=Msa0613290-mRNA-1:three_prime_utr;Parent=Msa0613290-mRNA-1
Gene Sequence

>Msa0613290

ATGAACATGGTAGAGTGTAAGAGAAAGAAGGAATCACAAGGTGAAAAAAACAATAACATGGATTCAAGTTCAGATTTTCCAGATGAAGTGTTGGAACGTGTTCTTGGGATGGTGAAATCACGCAAAGACAGAAGCTCAGTTTCATTGGTATGCAAAGAATGGTACAACGCTGAAAGATGGTCAAGGAGGAATGTTTTCATAGGTAACTGTTATGCTGTGTCACCTGAGATCTTGACACGTAGATTTCCAAACATAAGAAGTGTTACACTGAAAGGAAAACCTCGTTTTTCTGATTTCAACTTGGTTCCTGCAAATTGGGGTGCTGATATTCATTCATGGTTGGTTGTTTTTGCTGATAAATATCCTTTTCTTGAAGAGTTAAGGCTTAAGAGAATGGCTGTTAGTGATGAAAGTTTGGAGTTTTTGGCCTTTTCTTTTCCTAATTTCAAAGCTCTTTCTCTTTTGAGTTGTGATGGATTTAGCACTGATGGCTTGGCTGCTGTTGCTACTAATTGCAAGAACTTAACTGAACTTGACATACAGGAGAATGGCGTTGATGACAAAAGTGGTAATTGGTTGAGTTGCTTCCCAGAAAGCTTTACATCATTGGAAATATTGAACTTTGCCAACCTAAGCAATGATGTAAACTTCGACGCGCTCGAGAAACTTGTCGCTAGGTGCAATTCATTAAAAACTTTGAAGGTTAACAAAAGCGTAACACTGGAACAGTTGCAAAGACTTCTTGTCCGTGCTCCTCAGCTCTGTGAGCTTGGTACTGGCTCATTTTCACAAGAGCTGACAGGTCAGCAGTATTCAGAACTTGAACGCGCGTTCAACAATTGTAGAAGTCTTCACACCCTTTCTGGTTTATGGGTTGCTTCAGCACAATATCACCAAGTTCTATACCCTGCATGCACAAATCTGACTTTCTTGAATTTTAGTTATGCTCCTCTTGACAGTGAAGGCCTTTCTAAGCTTCTTGTTCGCTGTCCTAATCTTCGACGCCTTTGGGTATTGGACACAGTTGAAGACAAGGGACTGGAAGCTGTTGGATCATATTGTCCATTGCTTGAGGAGCTACGTGTTTTTCCTGGGGATCCCTTTGAGGAGGGCGCTGCACACGGGGTTACTGAATCAGGGTTTATTGCTGTCTCTGAAGGATGCCGGAAGCTACACTACGTCCTATACTTTTGCCGTCAGATGACCAATGCTGCTGTTGCTACTGTTGTGGAAAACTGCCCCGACTTTACTCATTTTCGGCTCTGCATCATGACCCCTGGTCAGCCAGATTACCAGACGGGTGAACCTATGGACGAGGCCTTTGGAGCAGTTGTTAAGACCTGCACTAAACTCCAAAGGCTTGCTGTGTCAGGTTCTCTAACTGACCTGACATTTGAGTATATAGGGAAGTATGCTAAAAACTTGGAAACACTTTCAGTGGCTTTTGCTGGAAGCAGTGATTGGGCAATGCAATGTGTACTGGTTGGCTGTCCGAAGCTGCGAAAACTTGAGATAAGGGACAGTCCATTCGGCAATGCCGCACTTTTGTCTGGTTTTGACAAGTATGAGTCAATGAGGTCACTTTGGATGTCGGACTGCAAAGTGACGATGAATGGATGTAGATTGTTAGCACAAGAAAGGCCTAGGTTGAATGTTGAAGTGATGCAGGAAGAAGGAGGTGATGATAGTCAGGCTGGAAAACTTTATGTTTATCGTTCTGTTGCTGGACCAAGAAGGGATGCACCTCCATTTGTTCTCACTCTCTGA
Protein sequence

>Msa0613290

MNMVECKRKKESQGEKNNNMDSSSDFPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRNVFIGNCYAVSPEILTRRFPNIRSVTLKGKPRFSDFNLVPANWGADIHSWLVVFADKYPFLEELRLKRMAVSDESLEFLAFSFPNFKALSLLSCDGFSTDGLAAVATNCKNLTELDIQENGVDDKSGNWLSCFPESFTSLEILNFANLSNDVNFDALEKLVARCNSLKTLKVNKSVTLEQLQRLLVRAPQLCELGTGSFSQELTGQQYSELERAFNNCRSLHTLSGLWVASAQYHQVLYPACTNLTFLNFSYAPLDSEGLSKLLVRCPNLRRLWVLDTVEDKGLEAVGSYCPLLEELRVFPGDPFEEGAAHGVTESGFIAVSEGCRKLHYVLYFCRQMTNAAVATVVENCPDFTHFRLCIMTPGQPDYQTGEPMDEAFGAVVKTCTKLQRLAVSGSLTDLTFEYIGKYAKNLETLSVAFAGSSDWAMQCVLVGCPKLRKLEIRDSPFGNAALLSGFDKYESMRSLWMSDCKVTMNGCRLLAQERPRLNVEVMQEEGGDDSQAGKLYVYRSVAGPRRDAPPFVLTL*