AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1206290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206290 MtrunA17_Chr4g0055371 96.941 425 7 1 1 419 1 425 0.0 856
Msa1206290 MtrunA17_Chr7g0233351 56.637 452 148 8 5 417 2 444 8.02e-155 445
Msa1206290 MtrunA17_Chr8g0336161 68.340 259 81 1 162 419 193 451 1.95e-117 350
Msa1206290 MtrunA17_Chr3g0114791 51.786 336 130 6 86 412 109 421 9.41e-102 309
Msa1206290 MtrunA17_Chr5g0424111 53.079 341 113 7 101 412 111 433 1.53e-101 309
Msa1206290 MtrunA17_Chr8g0377671 37.500 200 102 2 163 339 17 216 5.98e-31 120
Msa1206290 MtrunA17_Chr8g0377671 33.168 202 112 1 164 342 41 242 3.34e-27 109
Msa1206290 MtrunA17_Chr8g0377671 37.654 162 101 0 162 323 108 269 2.90e-26 107
Msa1206290 MtrunA17_Chr8g0377671 35.227 176 114 0 166 341 89 264 6.44e-26 106
Msa1206290 MtrunA17_Chr8g0377671 32.824 131 88 0 212 342 20 150 4.04e-17 81.3
Msa1206290 MtrunA17_Chr8g0380791 35.955 178 114 0 165 342 12 189 1.89e-29 121
Msa1206290 MtrunA17_Chr8g0380791 35.036 137 89 0 206 342 7 143 1.82e-19 90.9
Msa1206290 MtrunA17_Chr8g0380791 36.364 143 83 2 142 279 56 195 8.16e-15 76.6
Msa1206290 MtrunA17_Chr8g0377191 36.264 182 116 0 163 344 9 190 2.84e-29 113
Msa1206290 MtrunA17_Chr8g0377191 29.714 175 121 1 141 313 31 205 2.12e-16 77.4
Msa1206290 MtrunA17_Chr8g0382971 33.005 203 134 1 141 341 44 246 8.88e-28 112
Msa1206290 MtrunA17_Chr8g0382971 34.158 202 110 2 163 341 22 223 7.55e-24 101
Msa1206290 MtrunA17_Chr8g0382971 33.333 177 113 2 162 336 113 286 1.04e-21 95.5
Msa1206290 MtrunA17_Chr8g0382971 29.457 129 91 0 214 342 27 155 6.22e-11 63.5
Msa1206290 MtrunA17_Chr4g0059911 33.663 202 110 2 164 341 30 231 2.61e-27 112
Msa1206290 MtrunA17_Chr4g0059911 34.270 178 116 1 166 342 9 186 1.41e-23 101
Msa1206290 MtrunA17_Chr4g0059911 31.148 183 123 1 154 333 90 272 2.08e-20 92.0
Msa1206290 MtrunA17_Chr1g0171491 33.702 181 120 0 163 343 58 238 3.18e-26 111
Msa1206290 MtrunA17_Chr1g0171491 32.609 184 121 1 164 347 82 262 3.48e-20 93.2
Msa1206290 MtrunA17_Chr3g0115111 35.838 173 110 1 167 338 58 230 1.86e-25 108
Msa1206290 MtrunA17_Chr3g0115111 37.931 116 72 0 227 342 73 188 2.49e-18 87.4
Msa1206290 MtrunA17_Chr8g0353121 27.668 253 165 3 163 397 50 302 4.71e-25 107
Msa1206290 MtrunA17_Chr8g0353121 35.862 145 92 1 199 342 39 183 2.49e-18 87.4
Msa1206290 MtrunA17_Chr8g0353121 28.409 176 124 1 139 312 70 245 7.55e-13 70.5
Msa1206290 MtrunA17_Chr8g0383331 37.838 148 92 0 165 312 3 150 9.21e-25 99.8
Msa1206290 MtrunA17_Chr8g0383331 37.302 126 79 0 210 335 2 127 2.75e-21 90.1
Msa1206290 MtrunA17_Chr8g0383331 38.095 105 65 0 237 341 6 110 3.25e-14 70.1
Msa1206290 MtrunA17_Chr8g0383331 34.167 120 70 1 155 265 30 149 1.05e-12 65.9
Msa1206290 MtrunA17_Chr3g0131001 37.209 172 108 0 167 338 56 227 1.06e-24 106
Msa1206290 MtrunA17_Chr3g0131001 34.109 129 85 0 165 293 100 228 3.13e-15 77.8
Msa1206290 MtrunA17_Chr3g0131001 36.719 128 81 0 214 341 57 184 2.11e-12 68.9
Msa1206290 MtrunA17_Chr5g0424301 35.928 167 107 0 163 329 66 232 1.14e-24 106
Msa1206290 MtrunA17_Chr5g0424301 36.719 128 81 0 214 341 71 198 4.57e-19 89.7
Msa1206290 MtrunA17_Chr5g0424301 33.019 106 71 0 237 342 71 176 3.79e-12 68.2
Msa1206290 MtrunA17_Chr3g0082501 33.514 185 119 1 163 347 61 241 4.55e-24 105
Msa1206290 MtrunA17_Chr3g0082501 29.605 152 98 1 159 301 94 245 1.65e-13 72.4
Msa1206290 MtrunA17_Chr7g0256301 32.370 173 117 0 163 335 68 240 5.22e-24 104
Msa1206290 MtrunA17_Chr8g0385241 29.583 240 133 4 139 342 27 266 1.81e-22 99.0
Msa1206290 MtrunA17_Chr8g0385241 33.163 196 113 4 165 345 124 316 3.37e-22 98.2
Msa1206290 MtrunA17_Chr8g0385241 31.383 188 119 1 163 340 7 194 4.25e-20 92.0
Msa1206290 MtrunA17_Chr8g0385241 34.706 170 108 2 162 328 177 346 4.71e-20 91.7
Msa1206290 MtrunA17_Chr8g0385201 35.185 162 104 1 166 326 30 191 1.51e-21 97.1
Msa1206290 MtrunA17_Chr8g0385201 39.130 115 70 0 227 341 46 160 1.94e-17 84.7
Msa1206290 MtrunA17_Chr1g0180261 29.439 214 143 2 153 358 61 274 3.38e-21 96.3
Msa1206290 MtrunA17_Chr1g0180261 31.818 176 120 0 167 342 52 227 2.16e-20 94.0
Msa1206290 MtrunA17_Chr1g0180261 29.592 196 131 3 153 341 8 203 2.92e-18 87.4
Msa1206290 MtrunA17_Chr1g0180261 33.133 166 86 3 139 279 68 233 2.67e-15 78.2
Msa1206290 MtrunA17_Chr2g0316611 35.088 171 111 0 164 334 126 296 4.37e-21 94.4
Msa1206290 MtrunA17_Chr2g0316611 33.333 195 124 3 163 356 33 222 1.22e-17 84.0
Msa1206290 MtrunA17_Chr2g0316611 33.908 174 115 0 166 339 174 347 4.90e-16 79.3
Msa1206290 MtrunA17_Chr2g0316611 30.539 167 114 1 132 296 207 373 9.37e-11 63.2
Msa1206290 MtrunA17_Chr8g0377211 40.336 119 71 0 205 323 35 153 3.19e-20 87.4
Msa1206290 MtrunA17_Chr8g0377211 34.959 123 80 0 217 339 24 146 1.83e-16 77.0
Msa1206290 MtrunA17_Chr6g0467061 32.804 189 104 1 166 331 88 276 4.92e-19 87.8
Msa1206290 MtrunA17_Chr6g0467061 35.227 176 112 2 162 336 15 189 1.62e-18 86.3
Msa1206290 MtrunA17_Chr6g0467061 36.306 157 100 0 164 320 178 334 7.02e-18 84.3
Msa1206290 MtrunA17_Chr6g0467061 34.074 135 89 0 206 340 13 147 1.10e-15 77.8
Msa1206290 MtrunA17_Chr2g0316631 30.729 192 110 1 163 331 33 224 8.54e-19 86.7
Msa1206290 MtrunA17_Chr2g0316631 32.386 176 119 0 166 341 105 280 1.88e-17 82.4
Msa1206290 MtrunA17_Chr2g0316631 32.143 168 114 0 164 331 126 293 4.63e-17 81.3
Msa1206290 MtrunA17_Chr8g0383551 28.509 228 120 7 165 358 50 268 8.10e-16 78.6
Msa1206290 MtrunA17_Chr8g0383551 30.464 151 73 3 143 267 125 269 6.07e-11 63.5
Msa1206290 MtrunA17_Chr8g0377221 24.031 258 130 6 164 365 3 250 6.44e-13 68.9
Msa1206290 MtrunA17_Chr8g0377221 27.234 235 124 8 115 319 2 219 4.92e-11 63.2
Msa1206290 MtrunA17_Chr5g0398011 35.780 109 70 0 214 322 37 145 2.74e-12 64.3
Msa1206290 MtrunA17_Chr1g0210831 29.787 141 99 0 208 348 609 749 1.86e-11 66.2
Msa1206290 MtrunA17_Chr5g0398021 34.314 102 67 0 166 267 13 114 8.91e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1206290 AT4G17080.1 57.398 392 129 5 42 410 125 501 1.29e-141 414
Msa1206290 AT2G35170.1 58.235 340 119 6 70 386 107 446 2.95e-131 387
Msa1206290 AT1G21920.1 54.180 323 132 3 96 412 98 410 1.00e-101 309
Msa1206290 AT1G21920.2 57.540 252 101 2 96 341 98 349 1.28e-98 299
Msa1206290 AT1G77660.1 54.180 323 129 6 99 412 102 414 2.03e-96 295
Msa1206290 AT1G21980.1 37.059 170 107 0 167 336 77 246 3.03e-28 117
Msa1206290 AT1G21980.1 37.500 128 80 0 214 341 78 205 2.79e-19 90.9
Msa1206290 AT1G21980.1 30.370 135 93 1 165 298 121 255 6.32e-12 68.2
Msa1206290 AT2G41210.1 36.207 174 111 0 163 336 67 240 1.33e-27 115
Msa1206290 AT2G41210.1 38.281 128 79 0 214 341 72 199 1.89e-20 94.4
Msa1206290 AT1G77740.2 35.882 170 109 0 167 336 78 247 6.15e-27 114
Msa1206290 AT1G77740.2 36.719 128 81 0 214 341 79 206 7.34e-18 86.7
Msa1206290 AT1G77740.2 33.962 106 70 0 237 342 79 184 2.94e-11 65.9
Msa1206290 AT1G77740.1 35.882 170 109 0 167 336 78 247 6.15e-27 114
Msa1206290 AT1G77740.1 36.719 128 81 0 214 341 79 206 7.34e-18 86.7
Msa1206290 AT1G77740.1 33.962 106 70 0 237 342 79 184 2.94e-11 65.9
Msa1206290 AT3G56960.2 32.955 176 118 0 163 338 69 244 1.01e-26 113
Msa1206290 AT3G56960.2 36.719 128 81 0 214 341 74 201 7.54e-20 92.4
Msa1206290 AT3G56960.1 32.955 176 118 0 163 338 69 244 1.01e-26 113
Msa1206290 AT3G56960.1 36.719 128 81 0 214 341 74 201 7.54e-20 92.4
Msa1206290 AT1G60890.1 34.270 178 94 1 163 340 8 162 3.70e-25 108
Msa1206290 AT1G60890.1 34.118 170 112 0 155 324 23 192 1.83e-24 106
Msa1206290 AT1G60890.1 31.757 148 93 2 137 279 49 193 1.15e-12 70.5
Msa1206290 AT1G60890.2 34.270 178 94 1 163 340 20 174 4.18e-25 108
Msa1206290 AT1G60890.2 34.118 170 112 0 155 324 35 204 2.35e-24 106
Msa1206290 AT1G60890.2 31.757 148 93 2 137 279 61 205 1.38e-12 70.1
Msa1206290 AT2G26420.2 34.392 189 120 2 163 351 50 234 5.89e-25 108
Msa1206290 AT2G26420.3 34.392 189 120 2 163 351 50 234 5.89e-25 108
Msa1206290 AT2G26420.1 34.392 189 120 2 163 351 50 234 6.65e-25 107
Msa1206290 AT1G10900.2 35.404 161 104 0 164 324 32 192 3.37e-24 105
Msa1206290 AT1G10900.2 34.831 178 116 0 165 342 10 187 7.84e-24 104
Msa1206290 AT1G10900.2 30.769 156 85 1 207 339 6 161 1.47e-15 79.3
Msa1206290 AT1G10900.2 32.432 148 92 2 137 279 49 193 3.32e-12 68.9
Msa1206290 AT1G10900.1 35.404 161 104 0 164 324 32 192 3.37e-24 105
Msa1206290 AT1G10900.1 34.831 178 116 0 165 342 10 187 7.84e-24 104
Msa1206290 AT1G10900.1 30.769 156 85 1 207 339 6 161 1.47e-15 79.3
Msa1206290 AT1G10900.1 32.432 148 92 2 137 279 49 193 3.32e-12 68.9
Msa1206290 AT1G10900.3 35.404 161 104 0 164 324 32 192 3.37e-24 105
Msa1206290 AT1G10900.3 34.831 178 116 0 165 342 10 187 7.84e-24 104
Msa1206290 AT1G10900.3 30.769 156 85 1 207 339 6 161 1.47e-15 79.3
Msa1206290 AT1G10900.3 32.432 148 92 2 137 279 49 193 3.32e-12 68.9
Msa1206290 AT3G07960.3 32.258 186 122 1 163 348 24 205 6.45e-24 104
Msa1206290 AT3G07960.1 32.258 186 122 1 163 348 24 205 6.81e-24 104
Msa1206290 AT3G07960.2 32.258 186 122 1 163 348 24 205 7.66e-24 104
Msa1206290 AT3G07960.4 32.258 186 122 1 163 348 24 205 7.66e-24 104
Msa1206290 AT3G09920.3 27.413 259 167 2 148 394 23 272 7.19e-22 99.0
Msa1206290 AT3G09920.3 29.808 208 134 3 164 362 74 278 4.05e-21 96.7
Msa1206290 AT3G09920.4 27.413 259 167 2 148 394 23 272 7.19e-22 99.0
Msa1206290 AT3G09920.4 29.808 208 134 3 164 362 74 278 4.05e-21 96.7
Msa1206290 AT3G09920.2 27.413 259 167 2 148 394 23 272 7.19e-22 99.0
Msa1206290 AT3G09920.2 29.808 208 134 3 164 362 74 278 4.05e-21 96.7
Msa1206290 AT3G09920.1 27.413 259 167 2 148 394 23 272 7.19e-22 99.0
Msa1206290 AT3G09920.1 29.808 208 134 3 164 362 74 278 4.05e-21 96.7

Find 127 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGAGATCTAATTTGATTT+TGG 0.159266 8_1:-63241536 Msa1206290:three_prime_UTR
GATTAGGACGGTACCATTTC+AGG 0.220617 8_1:-63243953 Msa1206290:intron
AAAATAGATAGCAATGAAAA+TGG 0.298430 8_1:+63244802 None:intergenic
CTTGAAAGATTGAAACTTTG+AGG 0.305718 8_1:+63244562 None:intergenic
AGAGCTTAAATTCTGGATCT+TGG 0.306677 8_1:-63244313 Msa1206290:CDS
TGAACATATTAGCGTATCTT+TGG 0.306735 8_1:-63241238 Msa1206290:three_prime_UTR
CAACGTGTTGTATGGTCAAT+TGG 0.307585 8_1:-63244356 Msa1206290:CDS
ATAGCAGTGAGGTTCCTATT+TGG 0.308458 8_1:-63241453 Msa1206290:three_prime_UTR
TTTGAAGGTGATTGGATTGA+TGG 0.327944 8_1:-63244194 Msa1206290:CDS
GTGTTTCTATTTCTCTGTAT+TGG 0.335429 8_1:-63241477 Msa1206290:three_prime_UTR
AACAAATCTGATTCTGAAAT+CGG 0.341623 8_1:-63244755 Msa1206290:CDS
AAAATTACCAAAGTTAGTAT+AGG 0.344775 8_1:-63241284 Msa1206290:three_prime_UTR
AAATTACCAAAGTTAGTATA+GGG 0.344865 8_1:-63241283 Msa1206290:three_prime_UTR
CAATGAAAATGGAACTGGTT+TGG 0.349291 8_1:+63244813 None:intergenic
TACGCTAATATGTTCATAAC+AGG 0.351449 8_1:+63241245 None:intergenic
TTTGGTGGTGATGTTTATAC+TGG 0.359699 8_1:-63244071 Msa1206290:CDS
GAGAAAGTAAAGAGAGGTTA+AGG 0.372259 8_1:+63244505 None:intergenic
GAGCTTAAATTCTGGATCTT+GGG 0.376585 8_1:-63244312 Msa1206290:CDS
CATATGAGTGGAAGATTTGA+AGG 0.378466 8_1:-63244209 Msa1206290:CDS
AAGGGTTTGAGGCATGGAAT+TGG 0.379850 8_1:-63244107 Msa1206290:CDS
GATTGAAACTTTGAGGTAAA+GGG 0.380834 8_1:+63244569 None:intergenic
TTTCATAAGGGGAAGTGCTC+AGG 0.382882 8_1:-63244251 Msa1206290:CDS
ATTATGTTGGGGAATTCAAA+TGG 0.385157 8_1:-63243989 Msa1206290:CDS
TTTCAGAATCAGATTTGTTA+AGG 0.386777 8_1:+63244759 None:intergenic
TCAACGATCTTGAGAAGAAT+AGG 0.388984 8_1:+63244411 None:intergenic
GTGGAAGATTTGAAGGTGAT+TGG 0.394569 8_1:-63244202 Msa1206290:CDS
TGGGGTGTTAAACATGGATT+AGG 0.409371 8_1:-63243969 Msa1206290:CDS
GGCATGGAATTGGAATTTAT+AGG 0.412594 8_1:-63244097 Msa1206290:CDS
GGAGTTCATACTTGCAATGA+TGG 0.416556 8_1:-63244017 Msa1206290:CDS
AAAAGCAAGACAGTCATATT+GGG 0.421127 8_1:-63242544 Msa1206290:CDS
AATGGTCAGTGTCATGGCTT+TGG 0.421143 8_1:-63244038 Msa1206290:CDS
GAAGAGTGCAGCTTTCTCAT+AGG 0.423749 8_1:-63241640 Msa1206290:three_prime_UTR
TATGAAGGTGAGTTTCATAA+GGG 0.426937 8_1:-63244263 Msa1206290:CDS
GAGTTAAAGAGCTTAAATTC+TGG 0.427388 8_1:-63244320 Msa1206290:CDS
TGGCAGATTGTGGAGCAAAT+AGG 0.428417 8_1:-63241405 Msa1206290:three_prime_UTR
GCGGATATGATGCATGGCTT+TGG 0.433142 8_1:-63242704 Msa1206290:CDS
TTGTTTGATTCATATAAAAC+CGG 0.433533 8_1:+63244918 None:intergenic
TGCTTGAGAAGCGTTGTTCA+TGG 0.439654 8_1:+63244663 None:intergenic
TTATGAAGGTGAGTTTCATA+AGG 0.441190 8_1:-63244264 Msa1206290:CDS
AGTGTGGTCACTGGCAGAAT+GGG 0.442429 8_1:-63242583 Msa1206290:CDS
CATGCCACGCACCCTCATAT+CGG 0.449588 8_1:+63242657 None:intergenic
TCAGAATGGTCACCGATATG+AGG 0.450366 8_1:-63242669 Msa1206290:CDS
TGTAAACCCTATACTAACTT+TGG 0.451609 8_1:+63241277 None:intergenic
CTCATCAACAACGTGTTGTA+TGG 0.453709 8_1:-63244364 Msa1206290:CDS
AGATTGAAACTTTGAGGTAA+AGG 0.454037 8_1:+63244568 None:intergenic
GATAGCAATGAAAATGGAAC+TGG 0.456616 8_1:+63244808 None:intergenic
TTGGTGAAAATACAAGTGTT+TGG 0.457713 8_1:-63241174 Msa1206290:three_prime_UTR
TATAAGAATCATAGAAATGC+AGG 0.458537 8_1:-63241565 Msa1206290:three_prime_UTR
AACAAACAGTTTCTAAGCTC+CGG 0.463116 8_1:-63244937 Msa1206290:five_prime_UTR
GATGGAAAGTATGATGGGTT+TGG 0.464094 8_1:-63244176 Msa1206290:CDS
GAATAATAAGCTTTCTTCAT+CGG 0.464931 8_1:-63244390 Msa1206290:CDS
GTAGGTATCGTGGACAGTAT+AGG 0.468147 8_1:-63244130 Msa1206290:CDS
TTATGTTGGGGAATTCAAAT+GGG 0.469276 8_1:-63243988 Msa1206290:CDS
CAGTGTGGTCACTGGCAGAA+TGG 0.474325 8_1:-63242584 Msa1206290:CDS
TTAGTATAGGGTTTACATGC+TGG 0.477962 8_1:-63241271 Msa1206290:three_prime_UTR
AAGAGAAAATCAAGAAGAGT+TGG 0.478692 8_1:+63244473 None:intergenic
ATAGAATTGATTATGCCTCT+TGG 0.482251 8_1:-63241193 Msa1206290:three_prime_UTR
GTAAAGGGTATTGTAAAAGA+AGG 0.483157 8_1:+63244584 None:intergenic
TGGATTGATGGAAAGTATGA+TGG 0.494170 8_1:-63244182 Msa1206290:CDS
ATGATGGGAGTCATTATGTT+GGG 0.495925 8_1:-63244001 Msa1206290:CDS
AATGTCAAAGAAGGATGAAC+TGG 0.498099 8_1:-63241821 Msa1206290:CDS
TGAAGGAAGAAGACAAGGAC+TGG 0.499777 8_1:-63242636 Msa1206290:CDS
CTGGACAGCTTTGAAAACCT+TGG 0.499930 8_1:+63242499 None:intergenic
AACGTGTTGTATGGTCAATT+GGG 0.503626 8_1:-63244355 Msa1206290:CDS
GGTGTATGAGATGGTGAAGA+TGG 0.507475 8_1:+63244635 None:intergenic
GGAGTCTATCAATTTCAGAA+TGG 0.507486 8_1:-63242683 Msa1206290:CDS
GAAAATGATGAGGAGTAACT+TGG 0.509080 8_1:+63244687 None:intergenic
TTCAAATGGGGTGTTAAACA+TGG 0.513973 8_1:-63243975 Msa1206290:CDS
ATCACACGATAGACGAAATG+AGG 0.525873 8_1:+63241689 None:intergenic
TGGGTTCAAGTTTACAGCAA+TGG 0.526362 8_1:-63244293 Msa1206290:CDS
GTCAATTGGGTCAAAGGATG+AGG 0.530313 8_1:-63244342 Msa1206290:CDS
CATATCCGCAAAATATTCTC+CGG 0.537617 8_1:+63242718 None:intergenic
TTATTTATGATTATGAACAT+AGG 0.540687 8_1:-63241364 Msa1206290:three_prime_UTR
TATAGGAAGGGTTTGAGGCA+TGG 0.542708 8_1:-63244113 Msa1206290:CDS
TATGAGGGTGCGTGGCATGA+AGG 0.544188 8_1:-63242653 Msa1206290:CDS
TTATGAACATAGGAAGAGTA+AGG 0.549370 8_1:-63241354 Msa1206290:three_prime_UTR
GTGATGTTTATACTGGTGAA+TGG 0.551261 8_1:-63244064 Msa1206290:CDS
GACAGTATAGGAAGGGTTTG+AGG 0.555234 8_1:-63244118 Msa1206290:CDS
GGGAAACACAGTGTGGTCAC+TGG 0.556623 8_1:-63242592 Msa1206290:CDS
TGAAAAGAGAAAGTAAAGAG+AGG 0.558903 8_1:+63244499 None:intergenic
ATCCTTCTTTGACATTCCGT+AGG 0.560605 8_1:+63241828 None:intergenic
ATCATTGAACATTGTAATCA+CGG 0.560703 8_1:+63241716 None:intergenic
AAGGGGAAGTGCTCAGGGAG+TGG 0.561581 8_1:-63244245 Msa1206290:CDS
GAGTTCATACTTGCAATGAT+GGG 0.567190 8_1:-63244016 Msa1206290:CDS
TTGAACTCTATGGCAGATTG+TGG 0.569242 8_1:-63241415 Msa1206290:three_prime_UTR
AGCTAGAGTTGCAGCTGTGA+AGG 0.569793 8_1:-63241758 Msa1206290:CDS
TTCATAAGGGGAAGTGCTCA+GGG 0.572490 8_1:-63244250 Msa1206290:CDS
TATACTGGTGAATGGTGTAA+TGG 0.573863 8_1:-63244056 Msa1206290:CDS
AGCAATGGTGATGTTTATGA+AGG 0.574309 8_1:-63244278 Msa1206290:CDS
CAGAATGGTCACCGATATGA+GGG 0.575287 8_1:-63242668 Msa1206290:CDS
CAGCTTTGAAAACCTTGGCA+TGG 0.579822 8_1:+63242504 None:intergenic
AGCCTACGGAATGTCAAAGA+AGG 0.581674 8_1:-63241830 Msa1206290:CDS
GGATTGATGGAAAGTATGAT+GGG 0.582051 8_1:-63244181 Msa1206290:CDS
ATGGGTTTGGTGTTGAAACG+TGG 0.586936 8_1:-63244163 Msa1206290:CDS
GGTGTTGAAACGTGGGCTAG+AGG 0.588676 8_1:-63244155 Msa1206290:CDS
TTGTGTGTAGGTGTATGAGA+TGG 0.591599 8_1:+63244626 None:intergenic
TGTATGGTCAATTGGGTCAA+AGG 0.595542 8_1:-63244348 Msa1206290:CDS
CCTTGTTCTCATCCTCACTT+CGG 0.596551 8_1:-63241502 Msa1206290:three_prime_UTR
AGAAATGGGGACATATATGC+CGG 0.598656 8_1:-63242737 Msa1206290:CDS
AAACGTGGGCTAGAGGAAGT+AGG 0.599270 8_1:-63244148 Msa1206290:CDS
TGGTGTAATGGTCAGTGTCA+TGG 0.600058 8_1:-63244044 Msa1206290:CDS
GAAGGAAGAAGACAAGGACT+GGG 0.603856 8_1:-63242635 Msa1206290:CDS
CCGAAGTGAGGATGAGAACA+AGG 0.609666 8_1:+63241502 None:intergenic
GTATCGTGGACAGTATAGGA+AGG 0.617143 8_1:-63244126 Msa1206290:CDS
TGAACAGGATGCTCATTGTG+CGG 0.617594 8_1:-63241860 Msa1206290:intron
TCTGTATTGGTATAGCAGTG+AGG 0.626255 8_1:-63241464 Msa1206290:three_prime_UTR
TGTTCTCATCCTCACTTCGG+AGG 0.628048 8_1:-63241499 Msa1206290:three_prime_UTR
TTGAGTTGCAATGTGTATTG+TGG 0.629435 8_1:-63241320 Msa1206290:three_prime_UTR
GTCACCGATATGAGGGTGCG+TGG 0.630941 8_1:-63242661 Msa1206290:CDS
AATGATGGGAGTCATTATGT+TGG 0.635184 8_1:-63244002 Msa1206290:CDS
TTGTTATTACTGCAGAAATG+GGG 0.635687 8_1:-63242750 Msa1206290:intron
TGATGGGAGTCATTATGTTG+GGG 0.636425 8_1:-63244000 Msa1206290:CDS
TGTGCGGCGGAGAAAGCCTA+CGG 0.641747 8_1:-63241844 Msa1206290:CDS
TTGGCATGGTCTACAGCACA+TGG 0.645980 8_1:+63242518 None:intergenic
ATGTGCTGTAGACCATGCCA+AGG 0.647382 8_1:-63242516 Msa1206290:CDS
TATCGTGGACAGTATAGGAA+GGG 0.648017 8_1:-63244125 Msa1206290:CDS
ATAGAAACACCTCCGAAGTG+AGG 0.650853 8_1:+63241490 None:intergenic
TCACACGATAGACGAAATGA+GGG 0.656444 8_1:+63241690 None:intergenic
TATGTTGGGGAATTCAAATG+GGG 0.656507 8_1:-63243987 Msa1206290:CDS
TGGCATGAAGGAAGAAGACA+AGG 0.660942 8_1:-63242641 Msa1206290:CDS
TGGGTTTGGTGTTGAAACGT+GGG 0.670518 8_1:-63244162 Msa1206290:CDS
ATGAAGGTGAGTTTCATAAG+GGG 0.671828 8_1:-63244262 Msa1206290:CDS
GCTAGAGGAAGTAGGTATCG+TGG 0.672052 8_1:-63244140 Msa1206290:CDS
GTGTTAAACATGGATTAGGA+CGG 0.683306 8_1:-63243965 Msa1206290:CDS
ACAGGATGCTCATTGTGCGG+CGG 0.690381 8_1:-63241857 Msa1206290:intron
TGTTCATGGTGAAAATGATG+AGG 0.704077 8_1:+63244677 None:intergenic
AGAAACGGGGAAACACAGTG+TGG 0.759758 8_1:-63242599 Msa1206290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGAGAATTTACTTTTATT+TGG - chr8_1:63242519-63242538 Msa1206290:CDS 15.0%
!!! AAGAGAATTTACTTTTATTT+GGG - chr8_1:63242520-63242539 Msa1206290:CDS 15.0%
!!! CAAAGCTTTATATAAAAAAT+GGG + chr8_1:63242699-63242718 None:intergenic 15.0%
!! AATACAGATAAAAATATAAC+TGG + chr8_1:63243104-63243123 None:intergenic 15.0%
!! TTATTTATGATTATGAACAT+AGG - chr8_1:63244783-63244802 Msa1206290:exon 15.0%
!!! GTTTGTTTTAGTGTATAATT+TGG + chr8_1:63241197-63241216 None:intergenic 20.0%
!! TTGTTTGATTCATATAAAAC+CGG + chr8_1:63241232-63241251 None:intergenic 20.0%
!! AAAATAGATAGCAATGAAAA+TGG + chr8_1:63241348-63241367 None:intergenic 20.0%
!!! ATTGGAATTTATAGGTTTTT+TGG - chr8_1:63242058-63242077 Msa1206290:intron 20.0%
!! AGTTCAAAATTGTATTTAAG+TGG + chr8_1:63242350-63242369 None:intergenic 20.0%
!!! CCAAAGCTTTATATAAAAAA+TGG + chr8_1:63242700-63242719 None:intergenic 20.0%
!!! CCATTTTTTATATAAAGCTT+TGG - chr8_1:63242697-63242716 Msa1206290:CDS 20.0%
!! TGTCAATCAAATTGAATAAT+GGG + chr8_1:63243278-63243297 None:intergenic 20.0%
!! ATGTCAATCAAATTGAATAA+TGG + chr8_1:63243279-63243298 None:intergenic 20.0%
!!! CATGATTATATATTGTTTTG+TGG - chr8_1:63243794-63243813 Msa1206290:intron 20.0%
!! AGTAAAAAATGATGAAATCA+GGG + chr8_1:63243904-63243923 None:intergenic 20.0%
!! AAGTAAAAAATGATGAAATC+AGG + chr8_1:63243905-63243924 None:intergenic 20.0%
!!! ATCATTTTTTACTTTCTACT+TGG - chr8_1:63243911-63243930 Msa1206290:intron 20.0%
!!! TCATTTTTTACTTTCTACTT+GGG - chr8_1:63243912-63243931 Msa1206290:intron 20.0%
!! CATAGTTATTACTTATTGTT+TGG + chr8_1:63244236-63244255 None:intergenic 20.0%
!!! AATGAGATCTAATTTGATTT+TGG - chr8_1:63244611-63244630 Msa1206290:CDS 20.0%
!!! ACTAACTTTGGTAATTTTTT+TGG + chr8_1:63244861-63244880 None:intergenic 20.0%
!! AAAATTACCAAAGTTAGTAT+AGG - chr8_1:63244863-63244882 Msa1206290:five_prime_UTR 20.0%
!! AAATTACCAAAGTTAGTATA+GGG - chr8_1:63244864-63244883 Msa1206290:five_prime_UTR 20.0%
!!! TTTCAGAATCAGATTTGTTA+AGG + chr8_1:63241391-63241410 None:intergenic 25.0%
!!! AACAAATCTGATTCTGAAAT+CGG - chr8_1:63241392-63241411 Msa1206290:three_prime_UTR 25.0%
! GATTGAAAAATGAGTGAAAT+CGG + chr8_1:63241441-63241460 None:intergenic 25.0%
!!! AAAAGAAGGTTTGTTTTGAT+GGG + chr8_1:63241552-63241571 None:intergenic 25.0%
!!! TAAAAGAAGGTTTGTTTTGA+TGG + chr8_1:63241553-63241572 None:intergenic 25.0%
! GAATAATAAGCTTTCTTCAT+CGG - chr8_1:63241757-63241776 Msa1206290:CDS 25.0%
!! GTTTATCATTTTCATATGAG+TGG - chr8_1:63241926-63241945 Msa1206290:intron 25.0%
! AAAAAAGAACTAACCTGAAA+TGG + chr8_1:63242210-63242229 None:intergenic 25.0%
!! AGATTTGACATTATCTGTTT+TGG - chr8_1:63242375-63242394 Msa1206290:intron 25.0%
!!! AACACAAAATTGAGTTGAAT+AGG + chr8_1:63242494-63242513 None:intergenic 25.0%
!!! GATATTTATTTAGCTTTGGT+AGG - chr8_1:63242815-63242834 Msa1206290:intron 25.0%
! ATTTACTTTCAAAAGCCAAA+AGG - chr8_1:63242944-63242963 Msa1206290:intron 25.0%
! TGTATGTGTTTCTTCTAAAT+AGG - chr8_1:63243040-63243059 Msa1206290:intron 25.0%
! TTGTATCTAGCTAAAATACT+TGG - chr8_1:63243129-63243148 Msa1206290:intron 25.0%
! TAAAATACTTGGAAAGTGAT+TGG - chr8_1:63243140-63243159 Msa1206290:intron 25.0%
! CTAGCAATGTATAATGTAAT+TGG - chr8_1:63243301-63243320 Msa1206290:intron 25.0%
!!! ATTTGTTATTACTGCAGAAA+TGG - chr8_1:63243395-63243414 Msa1206290:intron 25.0%
!!! TTTGTTATTACTGCAGAAAT+GGG - chr8_1:63243396-63243415 Msa1206290:intron 25.0%
! TTATGTGAAAAACTACTGTA+AGG - chr8_1:63243731-63243750 Msa1206290:intron 25.0%
! AAACAGTCTTACAAATATGA+TGG + chr8_1:63244009-63244028 None:intergenic 25.0%
! ATCATATTTGTAAGACTGTT+TGG - chr8_1:63244008-63244027 Msa1206290:CDS 25.0%
! TCATATTTGTAAGACTGTTT+GGG - chr8_1:63244009-63244028 Msa1206290:CDS 25.0%
! TTTCATAAACTATCTTACAG+AGG + chr8_1:63244093-63244112 None:intergenic 25.0%
!!! GTACTTCTTTAATTTTGAAC+AGG - chr8_1:63244272-63244291 Msa1206290:CDS 25.0%
! ATCATTGAACATTGTAATCA+CGG + chr8_1:63244434-63244453 None:intergenic 25.0%
! TATAAGAATCATAGAAATGC+AGG - chr8_1:63244582-63244601 Msa1206290:CDS 25.0%
!!! GTTCACTTTTTCAATACACA+AGG - chr8_1:63241165-63241184 Msa1206290:three_prime_UTR 30.0%
!! GTAAAGGGTATTGTAAAAGA+AGG + chr8_1:63241566-63241585 None:intergenic 30.0%
!! GATTGAAACTTTGAGGTAAA+GGG + chr8_1:63241581-63241600 None:intergenic 30.0%
!! AGATTGAAACTTTGAGGTAA+AGG + chr8_1:63241582-63241601 None:intergenic 30.0%
CTTGAAAGATTGAAACTTTG+AGG + chr8_1:63241588-63241607 None:intergenic 30.0%
TGAAAAGAGAAAGTAAAGAG+AGG + chr8_1:63241651-63241670 None:intergenic 30.0%
AAGAGAAAATCAAGAAGAGT+TGG + chr8_1:63241677-63241696 None:intergenic 30.0%
GAGTTAAAGAGCTTAAATTC+TGG - chr8_1:63241827-63241846 Msa1206290:CDS 30.0%
TTATGAAGGTGAGTTTCATA+AGG - chr8_1:63241883-63241902 Msa1206290:intron 30.0%
TATGAAGGTGAGTTTCATAA+GGG - chr8_1:63241884-63241903 Msa1206290:intron 30.0%
!!! GGAATTTATAGGTTTTTTGG+TGG - chr8_1:63242061-63242080 Msa1206290:intron 30.0%
ATTATGTTGGGGAATTCAAA+TGG - chr8_1:63242158-63242177 Msa1206290:intron 30.0%
TTATGTTGGGGAATTCAAAT+GGG - chr8_1:63242159-63242178 Msa1206290:intron 30.0%
! TAACCATTCTGATAATGCTA+AGG + chr8_1:63242266-63242285 None:intergenic 30.0%
!! TGTTGATTCTTTGTTAAGTG+TGG - chr8_1:63242288-63242307 Msa1206290:intron 30.0%
TAATTGTGTCAATGTCAAGT+CGG - chr8_1:63242555-63242574 Msa1206290:CDS 30.0%
GTCAAATTCTTCACATATAG+TGG - chr8_1:63242657-63242676 Msa1206290:CDS 30.0%
!! AATCACTTTTACAAGTTCAG+CGG - chr8_1:63242791-63242810 Msa1206290:intron 30.0%
ATTAACCACGATTCAGTATT+TGG - chr8_1:63242983-63243002 Msa1206290:intron 30.0%
! GTATACTTTTCTGCTTTCAT+GGG - chr8_1:63243005-63243024 Msa1206290:intron 30.0%
GGTTGAGACATTATATAGTT+TGG + chr8_1:63243083-63243102 None:intergenic 30.0%
! TTGTTATTACTGCAGAAATG+GGG - chr8_1:63243397-63243416 Msa1206290:intron 30.0%
!! GGAATGTACACTTTTAGAAA+CGG - chr8_1:63243533-63243552 Msa1206290:intron 30.0%
!! GAATGTACACTTTTAGAAAC+GGG - chr8_1:63243534-63243553 Msa1206290:intron 30.0%
!! AATGTACACTTTTAGAAACG+GGG - chr8_1:63243535-63243554 Msa1206290:intron 30.0%
!!! TATGACTGTCTTGCTTTTTA+GGG + chr8_1:63243601-63243620 None:intergenic 30.0%
!!! ATATGACTGTCTTGCTTTTT+AGG + chr8_1:63243602-63243621 None:intergenic 30.0%
AAAAAGCAAGACAGTCATAT+TGG - chr8_1:63243602-63243621 Msa1206290:intron 30.0%
AAAAGCAAGACAGTCATATT+GGG - chr8_1:63243603-63243622 Msa1206290:intron 30.0%
ATCCAAAAATGACTATTACC+TGG + chr8_1:63243670-63243689 None:intergenic 30.0%
! GTGTTTCTATTTCTCTGTAT+TGG - chr8_1:63244670-63244689 Msa1206290:CDS 30.0%
TAGAGTTCAATGACAAAAAG+TGG + chr8_1:63244722-63244741 None:intergenic 30.0%
! CTTTTTGTCATTGAACTCTA+TGG - chr8_1:63244722-63244741 Msa1206290:CDS 30.0%
TTATGAACATAGGAAGAGTA+AGG - chr8_1:63244793-63244812 Msa1206290:exon 30.0%
TGTAAACCCTATACTAACTT+TGG + chr8_1:63244873-63244892 None:intergenic 30.0%
TACGCTAATATGTTCATAAC+AGG + chr8_1:63244905-63244924 None:intergenic 30.0%
TGAACATATTAGCGTATCTT+TGG - chr8_1:63244909-63244928 Msa1206290:five_prime_UTR 30.0%
!!! AATTCTATTTTGATGCTCTC+TGG + chr8_1:63244942-63244961 None:intergenic 30.0%
ATAGAATTGATTATGCCTCT+TGG - chr8_1:63244954-63244973 Msa1206290:five_prime_UTR 30.0%
TTGGTGAAAATACAAGTGTT+TGG - chr8_1:63244973-63244992 Msa1206290:five_prime_UTR 30.0%
!!! CACTTTTTCAATACACAAGG+CGG - chr8_1:63241168-63241187 Msa1206290:three_prime_UTR 35.0%
AACAAACAGTTTCTAAGCTC+CGG - chr8_1:63241210-63241229 Msa1206290:three_prime_UTR 35.0%
CAATGAAAATGGAACTGGTT+TGG + chr8_1:63241337-63241356 None:intergenic 35.0%
GATAGCAATGAAAATGGAAC+TGG + chr8_1:63241342-63241361 None:intergenic 35.0%
GAAAATGATGAGGAGTAACT+TGG + chr8_1:63241463-63241482 None:intergenic 35.0%
TGTTCATGGTGAAAATGATG+AGG + chr8_1:63241473-63241492 None:intergenic 35.0%
GAGAAAGTAAAGAGAGGTTA+AGG + chr8_1:63241645-63241664 None:intergenic 35.0%
TCAACGATCTTGAGAAGAAT+AGG + chr8_1:63241739-63241758 None:intergenic 35.0%
AACGTGTTGTATGGTCAATT+GGG - chr8_1:63241792-63241811 Msa1206290:CDS 35.0%
AGAGCTTAAATTCTGGATCT+TGG - chr8_1:63241834-63241853 Msa1206290:CDS 35.0%
GAGCTTAAATTCTGGATCTT+GGG - chr8_1:63241835-63241854 Msa1206290:CDS 35.0%
! AGCAATGGTGATGTTTATGA+AGG - chr8_1:63241869-63241888 Msa1206290:intron 35.0%
ATGAAGGTGAGTTTCATAAG+GGG - chr8_1:63241885-63241904 Msa1206290:intron 35.0%
CATATGAGTGGAAGATTTGA+AGG - chr8_1:63241938-63241957 Msa1206290:intron 35.0%
TTTGAAGGTGATTGGATTGA+TGG - chr8_1:63241953-63241972 Msa1206290:intron 35.0%
! TGGATTGATGGAAAGTATGA+TGG - chr8_1:63241965-63241984 Msa1206290:intron 35.0%
! GGATTGATGGAAAGTATGAT+GGG - chr8_1:63241966-63241985 Msa1206290:intron 35.0%
GGCATGGAATTGGAATTTAT+AGG - chr8_1:63242050-63242069 Msa1206290:intron 35.0%
!! TTTGGTGGTGATGTTTATAC+TGG - chr8_1:63242076-63242095 Msa1206290:intron 35.0%
GTGATGTTTATACTGGTGAA+TGG - chr8_1:63242083-63242102 Msa1206290:intron 35.0%
TATACTGGTGAATGGTGTAA+TGG - chr8_1:63242091-63242110 Msa1206290:intron 35.0%
GAGTTCATACTTGCAATGAT+GGG - chr8_1:63242131-63242150 Msa1206290:intron 35.0%
! AATGATGGGAGTCATTATGT+TGG - chr8_1:63242145-63242164 Msa1206290:intron 35.0%
! ATGATGGGAGTCATTATGTT+GGG - chr8_1:63242146-63242165 Msa1206290:intron 35.0%
TATGTTGGGGAATTCAAATG+GGG - chr8_1:63242160-63242179 Msa1206290:intron 35.0%
! TTCAAATGGGGTGTTAAACA+TGG - chr8_1:63242172-63242191 Msa1206290:intron 35.0%
!! GTGTTAAACATGGATTAGGA+CGG - chr8_1:63242182-63242201 Msa1206290:intron 35.0%
GTTCCTTAGCATTATCAGAA+TGG - chr8_1:63242260-63242279 Msa1206290:intron 35.0%
TTCTTTGTTAAGTGTGGACT+TGG - chr8_1:63242294-63242313 Msa1206290:intron 35.0%
!!! GTTTTGGTTAAGTGTACTTC+TGG - chr8_1:63242391-63242410 Msa1206290:intron 35.0%
! CTGACTTCAATCTGAAGTAT+TGG - chr8_1:63242604-63242623 Msa1206290:CDS 35.0%
ATAGTGGTCATTGTGATTCT+AGG - chr8_1:63242673-63242692 Msa1206290:CDS 35.0%
CAGGTTGTTGAAAATTTGAG+TGG + chr8_1:63242736-63242755 None:intergenic 35.0%
! CTCAAATTTTCAACAACCTG+TGG - chr8_1:63242736-63242755 Msa1206290:CDS 35.0%
GCAAGGTAAATGAATCAAAC+AGG + chr8_1:63242770-63242789 None:intergenic 35.0%
ACTTGTAAAAGTGATTGGCA+AGG + chr8_1:63242787-63242806 None:intergenic 35.0%
GCTGAACTTGTAAAAGTGAT+TGG + chr8_1:63242792-63242811 None:intergenic 35.0%
! CGGCGATATTTATTTAGCTT+TGG - chr8_1:63242811-63242830 Msa1206290:intron 35.0%
TGTTGTTGGCATTGTTTGTT+CGG + chr8_1:63242853-63242872 None:intergenic 35.0%
CTAGTACAACAGAATGTTGT+TGG + chr8_1:63242867-63242886 None:intergenic 35.0%
CTTTCAAAAGCCAAAAGGAT+TGG - chr8_1:63242949-63242968 Msa1206290:intron 35.0%
ATCGTGGTTAATGAGAAACT+AGG + chr8_1:63242975-63242994 None:intergenic 35.0%
GTATACCAAATACTGAATCG+TGG + chr8_1:63242991-63243010 None:intergenic 35.0%
! GGTATACTTTTCTGCTTTCA+TGG - chr8_1:63243004-63243023 Msa1206290:intron 35.0%
AACTTGACCATATTCTTGCA+CGG + chr8_1:63243221-63243240 None:intergenic 35.0%
! ATATGCCGGAGAATATTTTG+CGG - chr8_1:63243424-63243443 Msa1206290:intron 35.0%
CATATCCGCAAAATATTCTC+CGG + chr8_1:63243432-63243451 None:intergenic 35.0%
! TATTTTGCGGATATGATGCA+TGG - chr8_1:63243437-63243456 Msa1206290:intron 35.0%
GGAGTCTATCAATTTCAGAA+TGG - chr8_1:63243464-63243483 Msa1206290:intron 35.0%
!! GTCCAGGTAATAGTCATTTT+TGG - chr8_1:63243665-63243684 Msa1206290:intron 35.0%
AAATCAGGGAATGTCTATTC+AGG + chr8_1:63243890-63243909 None:intergenic 35.0%
GTCAATTAAAATAAGCCCTC+AGG + chr8_1:63243960-63243979 None:intergenic 35.0%
GCTGCAAACACTTAATTAAG+TGG - chr8_1:63244205-63244224 Msa1206290:CDS 35.0%
AATGTCAAAGAAGGATGAAC+TGG - chr8_1:63244326-63244345 Msa1206290:CDS 35.0%
GACAAAAAGTGGTTCCAAAT+AGG + chr8_1:63244711-63244730 None:intergenic 35.0%
! TTGAGTTGCAATGTGTATTG+TGG - chr8_1:63244827-63244846 Msa1206290:five_prime_UTR 35.0%
TTAGTATAGGGTTTACATGC+TGG - chr8_1:63244876-63244895 Msa1206290:five_prime_UTR 35.0%
! ACACTTGTATTTTCACCAAG+AGG + chr8_1:63244972-63244991 None:intergenic 35.0%
TTGTGTGTAGGTGTATGAGA+TGG + chr8_1:63241524-63241543 None:intergenic 40.0%
!!! TGATGGGTTTTGTTGTGTGT+AGG + chr8_1:63241536-63241555 None:intergenic 40.0%
CTCATCAACAACGTGTTGTA+TGG - chr8_1:63241783-63241802 Msa1206290:CDS 40.0%
CAACGTGTTGTATGGTCAAT+TGG - chr8_1:63241791-63241810 Msa1206290:CDS 40.0%
TGTATGGTCAATTGGGTCAA+AGG - chr8_1:63241799-63241818 Msa1206290:CDS 40.0%
! TGGGTTCAAGTTTACAGCAA+TGG - chr8_1:63241854-63241873 Msa1206290:CDS 40.0%
GTGGAAGATTTGAAGGTGAT+TGG - chr8_1:63241945-63241964 Msa1206290:intron 40.0%
!! GATGGAAAGTATGATGGGTT+TGG - chr8_1:63241971-63241990 Msa1206290:intron 40.0%
TATCGTGGACAGTATAGGAA+GGG - chr8_1:63242022-63242041 Msa1206290:intron 40.0%
GGAGTTCATACTTGCAATGA+TGG - chr8_1:63242130-63242149 Msa1206290:intron 40.0%
TGATGGGAGTCATTATGTTG+GGG - chr8_1:63242147-63242166 Msa1206290:intron 40.0%
! TGGGGTGTTAAACATGGATT+AGG - chr8_1:63242178-63242197 Msa1206290:intron 40.0%
GTTAAGTGTGGACTTGGATT+AGG - chr8_1:63242300-63242319 Msa1206290:intron 40.0%
AGTCAGATTGAATGCATGTC+TGG + chr8_1:63242590-63242609 None:intergenic 40.0%
! AGAAACTAGGCCAATCCTTT+TGG + chr8_1:63242962-63242981 None:intergenic 40.0%
ACTGTATCCGTGCAAGAATA+TGG - chr8_1:63243211-63243230 Msa1206290:intron 40.0%
TGTCGAAGCTAATTTCAAGG+AGG + chr8_1:63243356-63243375 None:intergenic 40.0%
AGCTGTCGAAGCTAATTTCA+AGG + chr8_1:63243359-63243378 None:intergenic 40.0%
AGAAATGGGGACATATATGC+CGG - chr8_1:63243410-63243429 Msa1206290:intron 40.0%
TGTGGCTTTCCTTGTATCTT+TGG - chr8_1:63243812-63243831 Msa1206290:intron 40.0%
ATGGCAACACCAAAGATACA+AGG + chr8_1:63243824-63243843 None:intergenic 40.0%
ATGTCCATCACGAATCATGA+TGG + chr8_1:63243843-63243862 None:intergenic 40.0%
TACTTTCTACTTGGGCTTTC+TGG - chr8_1:63243920-63243939 Msa1206290:intron 40.0%
! ATAAGCCCTCAGGTTGTTTA+AGG + chr8_1:63243950-63243969 None:intergenic 40.0%
ATCCTTCTTTGACATTCCGT+AGG + chr8_1:63244322-63244341 None:intergenic 40.0%
TCACACGATAGACGAAATGA+GGG + chr8_1:63244460-63244479 None:intergenic 40.0%
ATCACACGATAGACGAAATG+AGG + chr8_1:63244461-63244480 None:intergenic 40.0%
! TCTGTATTGGTATAGCAGTG+AGG - chr8_1:63244683-63244702 Msa1206290:CDS 40.0%
ATAGCAGTGAGGTTCCTATT+TGG - chr8_1:63244694-63244713 Msa1206290:CDS 40.0%
TTGAACTCTATGGCAGATTG+TGG - chr8_1:63244732-63244751 Msa1206290:CDS 40.0%
!! TGCTTGAGAAGCGTTGTTCA+TGG + chr8_1:63241487-63241506 None:intergenic 45.0%
GGTGTATGAGATGGTGAAGA+TGG + chr8_1:63241515-63241534 None:intergenic 45.0%
GTCAATTGGGTCAAAGGATG+AGG - chr8_1:63241805-63241824 Msa1206290:CDS 45.0%
!! TTTCATAAGGGGAAGTGCTC+AGG - chr8_1:63241896-63241915 Msa1206290:intron 45.0%
!! TTCATAAGGGGAAGTGCTCA+GGG - chr8_1:63241897-63241916 Msa1206290:intron 45.0%
!! ATGGGTTTGGTGTTGAAACG+TGG - chr8_1:63241984-63242003 Msa1206290:intron 45.0%
!! TGGGTTTGGTGTTGAAACGT+GGG - chr8_1:63241985-63242004 Msa1206290:intron 45.0%
! GTAGGTATCGTGGACAGTAT+AGG - chr8_1:63242017-63242036 Msa1206290:intron 45.0%
GTATCGTGGACAGTATAGGA+AGG - chr8_1:63242021-63242040 Msa1206290:intron 45.0%
GACAGTATAGGAAGGGTTTG+AGG - chr8_1:63242029-63242048 Msa1206290:intron 45.0%
! TATAGGAAGGGTTTGAGGCA+TGG - chr8_1:63242034-63242053 Msa1206290:intron 45.0%
! AAGGGTTTGAGGCATGGAAT+TGG - chr8_1:63242040-63242059 Msa1206290:intron 45.0%
TGGTGTAATGGTCAGTGTCA+TGG - chr8_1:63242103-63242122 Msa1206290:intron 45.0%
AATGGTCAGTGTCATGGCTT+TGG - chr8_1:63242109-63242128 Msa1206290:intron 45.0%
GATTAGGACGGTACCATTTC+AGG - chr8_1:63242194-63242213 Msa1206290:intron 45.0%
! TTCTGGTTGTTTGATGCAGC+AGG - chr8_1:63242408-63242427 Msa1206290:intron 45.0%
!! GCAGCAGGACTTTGATTTTC+TGG - chr8_1:63242423-63242442 Msa1206290:intron 45.0%
TGTCAATGTCAAGTCGGTGT+CGG - chr8_1:63242561-63242580 Msa1206290:CDS 45.0%
TCAGAATGGTCACCGATATG+AGG - chr8_1:63243478-63243497 Msa1206290:intron 45.0%
CAGAATGGTCACCGATATGA+GGG - chr8_1:63243479-63243498 Msa1206290:intron 45.0%
TGGCATGAAGGAAGAAGACA+AGG - chr8_1:63243506-63243525 Msa1206290:intron 45.0%
TGAAGGAAGAAGACAAGGAC+TGG - chr8_1:63243511-63243530 Msa1206290:intron 45.0%
GAAGGAAGAAGACAAGGACT+GGG - chr8_1:63243512-63243531 Msa1206290:intron 45.0%
!! CAGCTTTGAAAACCTTGGCA+TGG + chr8_1:63243646-63243665 None:intergenic 45.0%
!! CTGGACAGCTTTGAAAACCT+TGG + chr8_1:63243651-63243670 None:intergenic 45.0%
! CAAGGTTTTCAAAGCTGTCC+AGG - chr8_1:63243649-63243668 Msa1206290:intron 45.0%
GTTGCCATCATGATTCGTGA+TGG - chr8_1:63243836-63243855 Msa1206290:intron 45.0%
TTTCTACTTGGGCTTTCTGG+TGG - chr8_1:63243923-63243942 Msa1206290:intron 45.0%
GTGGACCTTAAACAACCTGA+GGG - chr8_1:63243942-63243961 Msa1206290:intron 45.0%
TGAACAGGATGCTCATTGTG+CGG - chr8_1:63244287-63244306 Msa1206290:CDS 45.0%
AGCCTACGGAATGTCAAAGA+AGG - chr8_1:63244317-63244336 Msa1206290:CDS 45.0%
! GAAGAGTGCAGCTTTCTCAT+AGG - chr8_1:63244507-63244526 Msa1206290:CDS 45.0%
CCTTGTTCTCATCCTCACTT+CGG - chr8_1:63244645-63244664 Msa1206290:CDS 45.0%
ATAGAAACACCTCCGAAGTG+AGG + chr8_1:63244660-63244679 None:intergenic 45.0%
TGGCAGATTGTGGAGCAAAT+AGG - chr8_1:63244742-63244761 Msa1206290:CDS 45.0%
!!! ATTACTTTTTATAAATTAAA+AGG - chr8_1:63243755-63243774 Msa1206290:intron 5.0%
!!! TTACTTTTTATAAATTAAAA+GGG - chr8_1:63243756-63243775 Msa1206290:intron 5.0%
!! AAACGTGGGCTAGAGGAAGT+AGG - chr8_1:63241999-63242018 Msa1206290:intron 50.0%
! GCTAGAGGAAGTAGGTATCG+TGG - chr8_1:63242007-63242026 Msa1206290:intron 50.0%
CAAACAGGTGCTTCAACCAC+AGG + chr8_1:63242755-63242774 None:intergenic 50.0%
GCGGATATGATGCATGGCTT+TGG - chr8_1:63243443-63243462 Msa1206290:intron 50.0%
AGAAACGGGGAAACACAGTG+TGG - chr8_1:63243548-63243567 Msa1206290:intron 50.0%
AGTGTGGTCACTGGCAGAAT+GGG - chr8_1:63243564-63243583 Msa1206290:intron 50.0%
TTGGCATGGTCTACAGCACA+TGG + chr8_1:63243632-63243651 None:intergenic 50.0%
ATGTGCTGTAGACCATGCCA+AGG - chr8_1:63243631-63243650 Msa1206290:intron 50.0%
GGTGGACCTTAAACAACCTG+AGG - chr8_1:63243941-63243960 Msa1206290:intron 50.0%
AGCTAGAGTTGCAGCTGTGA+AGG - chr8_1:63244389-63244408 Msa1206290:CDS 50.0%
CCGAAGTGAGGATGAGAACA+AGG + chr8_1:63244648-63244667 None:intergenic 50.0%
TGTTCTCATCCTCACTTCGG+AGG - chr8_1:63244648-63244667 Msa1206290:CDS 50.0%
!! GGTGTTGAAACGTGGGCTAG+AGG - chr8_1:63241992-63242011 Msa1206290:intron 55.0%
CATGCCACGCACCCTCATAT+CGG + chr8_1:63243493-63243512 None:intergenic 55.0%
! TATGAGGGTGCGTGGCATGA+AGG - chr8_1:63243494-63243513 Msa1206290:intron 55.0%
GGGAAACACAGTGTGGTCAC+TGG - chr8_1:63243555-63243574 Msa1206290:intron 55.0%
CAGTGTGGTCACTGGCAGAA+TGG - chr8_1:63243563-63243582 Msa1206290:intron 55.0%
ACAGGATGCTCATTGTGCGG+CGG - chr8_1:63244290-63244309 Msa1206290:CDS 55.0%
!! AAGGGGAAGTGCTCAGGGAG+TGG - chr8_1:63241902-63241921 Msa1206290:intron 60.0%
! GTCACCGATATGAGGGTGCG+TGG - chr8_1:63243486-63243505 Msa1206290:intron 60.0%
TGTGCGGCGGAGAAAGCCTA+CGG - chr8_1:63244303-63244322 Msa1206290:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 63241148 63245021 63241148 ID=Msa1206290;Name=Msa1206290
chr8_1 mRNA 63241148 63245021 63241148 ID=Msa1206290-mRNA-1;Parent=Msa1206290;Name=Msa1206290-mRNA-1;_AED=0.05;_eAED=0.05;_QI=226|1|1|1|1|1|3|569|419
chr8_1 exon 63241148 63241875 63241148 ID=Msa1206290-mRNA-1:exon:20475;Parent=Msa1206290-mRNA-1
chr8_1 exon 63242499 63242757 63242499 ID=Msa1206290-mRNA-1:exon:20474;Parent=Msa1206290-mRNA-1
chr8_1 exon 63243954 63245021 63243954 ID=Msa1206290-mRNA-1:exon:20473;Parent=Msa1206290-mRNA-1
chr8_1 five_prime_UTR 63244796 63245021 63244796 ID=Msa1206290-mRNA-1:five_prime_utr;Parent=Msa1206290-mRNA-1
chr8_1 CDS 63243954 63244795 63243954 ID=Msa1206290-mRNA-1:cds;Parent=Msa1206290-mRNA-1
chr8_1 CDS 63242499 63242757 63242499 ID=Msa1206290-mRNA-1:cds;Parent=Msa1206290-mRNA-1
chr8_1 CDS 63241717 63241875 63241717 ID=Msa1206290-mRNA-1:cds;Parent=Msa1206290-mRNA-1
chr8_1 three_prime_UTR 63241148 63241716 63241148 ID=Msa1206290-mRNA-1:three_prime_utr;Parent=Msa1206290-mRNA-1
Gene Sequence

>Msa1206290

ATGTTAATGCGTCACCTTAACAAATCTGATTCTGAAATCGGAAAAGAAAATTTCAATCTTTCTTCCGATTTCACTCATTTTTCAATCCAAGTTACTCCTCATCATTTTCACCATGAACAACGCTTCTCAAGCAACACTCCATCTTCACCATCTCATACACCTACACACAACAAAACCCATCAAAACAAACCTTCTTTTACAATACCCTTTACCTCAAAGTTTCAATCTTTCAAGCTTCTCACACGTTTTCATTTCATCATCTTCATTTCCTTAACCTCTCTTTACTTTCTCTTTTCACATCCAACTCTTCTTGATTTTCTCTTTGTGCTACTTTTCTCATCAGCAATTTTTGTTTCTATCAACCTATTCTTCTCAAGATCGTTGAATAATAAGCTTTCTTCATCGGATTCTCATCAACAACGTGTTGTATGGTCAATTGGGTCAAAGGATGAGGAGTTAAAGAGCTTAAATTCTGGATCTTGGGTTCAAGTTTACAGCAATGGTGATGTTTATGAAGGTGAGTTTCATAAGGGGAAGTGCTCAGGGAGTGGTGTTTATCATTTTCATATGAGTGGAAGATTTGAAGGTGATTGGATTGATGGAAAGTATGATGGGTTTGGTGTTGAAACGTGGGCTAGAGGAAGTAGGTATCGTGGACAGTATAGGAAGGGTTTGAGGCATGGAATTGGAATTTATAGGTTTTTTGGTGGTGATGTTTATACTGGTGAATGGTGTAATGGTCAGTGTCATGGCTTTGGAGTTCATACTTGCAATGATGGGAGTCATTATGTTGGGGAATTCAAATGGGGTGTTAAACATGGATTAGGACGGTACCATTTCAGAAATGGGGACATATATGCCGGAGAATATTTTGCGGATATGATGCATGGCTTTGGAGTCTATCAATTTCAGAATGGTCACCGATATGAGGGTGCGTGGCATGAAGGAAGAAGACAAGGACTGGGAATGTACACTTTTAGAAACGGGGAAACACAGTGTGGTCACTGGCAGAATGGGATTCTTGATAACCCTAAAAAGCAAGACAGTCATATTGGGTCTCCATGTGCTGTAGACCATGCCAAGGTTTTCAAAGCTGTCCAGGATGCTCATTGTGCGGCGGAGAAAGCCTACGGAATGTCAAAGAAGGATGAACTGGTGAATAAAGTAGCAGCTGCAGCTAATAAAGCAGCAAATGCAGCTAGAGTTGCAGCTGTGAAGGCTGTGCAAAATAGTATGCACCGTGATTACAATGTTCAATGA

Protein sequence

>Msa1206290

MLMRHLNKSDSEIGKENFNLSSDFTHFSIQVTPHHFHHEQRFSSNTPSSPSHTPTHNKTHQNKPSFTIPFTSKFQSFKLLTRFHFIIFISLTSLYFLFSHPTLLDFLFVLLFSSAIFVSINLFFSRSLNNKLSSSDSHQQRVVWSIGSKDEELKSLNSGSWVQVYSNGDVYEGEFHKGKCSGSGVYHFHMSGRFEGDWIDGKYDGFGVETWARGSRYRGQYRKGLRHGIGIYRFFGGDVYTGEWCNGQCHGFGVHTCNDGSHYVGEFKWGVKHGLGRYHFRNGDIYAGEYFADMMHGFGVYQFQNGHRYEGAWHEGRRQGLGMYTFRNGETQCGHWQNGILDNPKKQDSHIGSPCAVDHAKVFKAVQDAHCAAEKAYGMSKKDELVNKVAAAANKAANAARVAAVKAVQNSMHRDYNVQ*