AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1458090


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1458090 MtrunA17_Chr3g0136811 90.000 310 14 1 1 310 1 293 0.0 574
Msa1458090 MtrunA17_Chr4g0001761 72.131 305 68 1 1 305 1 288 3.10e-168 472
Msa1458090 MtrunA17_Chr1g0150071 70.927 313 73 2 1 312 1 296 2.06e-163 459
Msa1458090 MtrunA17_Chr4g0007811 80.795 151 5 1 40 190 54 180 1.36e-80 244
Msa1458090 MtrunA17_Chr5g0435721 30.556 288 142 8 23 308 192 423 3.88e-30 119
Msa1458090 MtrunA17_Chr5g0407161 27.445 317 147 7 22 323 84 332 8.93e-29 114
Msa1458090 MtrunA17_Chr3g0138281 28.616 318 147 8 21 323 80 332 9.74e-28 111
Msa1458090 MtrunA17_Chr2g0299981 29.866 298 153 7 24 303 221 480 8.27e-27 110
Msa1458090 MtrunA17_Chr1g0212961 31.023 303 130 12 19 317 91 318 1.22e-26 107
Msa1458090 MtrunA17_Chr1g0194191 28.105 306 134 8 22 308 78 316 2.63e-26 107
Msa1458090 MtrunA17_Chr1g0150451 28.328 293 136 9 18 307 72 293 2.82e-26 106
Msa1458090 MtrunA17_Chr3g0136711 28.344 314 143 12 5 307 8 250 9.43e-26 104
Msa1458090 MtrunA17_Chr3g0112291 30.000 290 143 10 23 308 92 325 2.95e-25 104
Msa1458090 MtrunA17_Chr3g0126511 29.412 289 130 10 18 303 89 306 6.78e-25 103
Msa1458090 MtrunA17_Chr5g0430481 29.066 289 126 10 24 307 124 338 6.81e-25 103
Msa1458090 MtrunA17_Chr5g0396731 29.801 302 143 5 14 308 63 302 9.14e-25 102
Msa1458090 MtrunA17_Chr4g0070871 27.097 310 149 8 24 315 207 457 1.15e-24 103
Msa1458090 MtrunA17_Chr2g0293811 27.632 304 132 8 21 304 59 294 2.05e-24 102
Msa1458090 MtrunA17_Chr3g0105371 28.470 281 126 7 30 307 94 302 3.55e-24 100
Msa1458090 MtrunA17_Chr3g0105351 26.821 302 144 8 7 305 49 276 4.34e-24 100
Msa1458090 MtrunA17_Chr1g0171571 27.667 300 146 12 22 312 386 623 2.49e-22 97.8
Msa1458090 MtrunA17_Chr1g0150781 25.733 307 143 4 24 303 240 488 2.98e-21 94.4
Msa1458090 MtrunA17_Chr3g0135961 25.081 307 150 6 24 303 231 484 5.04e-21 93.6
Msa1458090 MtrunA17_Chr8g0389921 26.645 304 137 6 19 300 144 383 9.98e-21 92.4
Msa1458090 MtrunA17_Chr6g0483411 25.000 300 138 8 30 308 51 284 1.53e-19 87.4
Msa1458090 MtrunA17_Chr3g0144111 31.325 166 91 4 143 308 52 194 1.94e-19 86.3
Msa1458090 MtrunA17_Chr5g0426141 27.148 291 135 13 22 307 33 251 1.53e-18 84.0
Msa1458090 MtrunA17_Chr4g0050381 25.862 290 140 9 22 307 28 246 6.12e-18 82.4
Msa1458090 MtrunA17_Chr3g0115851 26.804 291 136 12 22 307 33 251 1.15e-17 81.6
Msa1458090 MtrunA17_Chr3g0127091 26.603 312 150 9 22 308 59 316 1.22e-17 82.8
Msa1458090 MtrunA17_Chr4g0065141 32.450 151 85 1 158 308 184 317 3.96e-17 81.3
Msa1458090 MtrunA17_Chr1g0151781 28.125 288 154 10 28 304 43 288 5.88e-17 80.5
Msa1458090 MtrunA17_Chr1g0158781 28.470 281 130 6 22 298 111 324 2.22e-15 76.3
Msa1458090 MtrunA17_Chr2g0317021 31.544 149 78 4 160 307 177 302 1.06e-14 73.9
Msa1458090 MtrunA17_Chr1g0181901 24.194 310 160 10 33 320 57 313 2.56e-14 73.2
Msa1458090 MtrunA17_Chr7g0263281 23.826 298 144 11 33 304 52 292 4.62e-13 69.3
Msa1458090 MtrunA17_Chr4g0004971 23.759 282 176 11 30 304 54 303 4.69e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1458090 AT4G31860.3 74.920 311 61 1 1 311 1 294 2.53e-178 495
Msa1458090 AT4G31860.1 74.839 310 61 1 1 310 1 293 6.30e-177 494
Msa1458090 AT4G31860.2 75.342 292 55 1 1 292 1 275 1.84e-167 467
Msa1458090 AT2G25070.1 69.677 310 77 1 1 310 1 293 3.15e-166 467
Msa1458090 AT2G25070.2 69.677 310 77 1 1 310 1 293 3.15e-166 467
Msa1458090 AT5G10740.1 29.904 311 140 10 4 307 10 249 2.52e-30 118
Msa1458090 AT5G10740.2 29.904 311 140 10 4 307 10 249 2.52e-30 118
Msa1458090 AT5G24940.1 30.225 311 140 13 18 323 28 266 6.90e-29 115
Msa1458090 AT2G25620.1 29.054 296 139 6 23 308 89 323 1.67e-27 111
Msa1458090 AT2G25620.2 29.054 296 139 6 23 308 89 323 1.67e-27 111
Msa1458090 AT4G31750.1 27.885 312 143 10 7 307 9 249 3.59e-27 108
Msa1458090 AT4G31750.3 27.885 312 143 10 7 307 9 249 3.59e-27 108
Msa1458090 AT4G31750.2 27.885 312 143 10 7 307 9 249 3.99e-27 108
Msa1458090 AT1G07430.1 30.537 298 140 11 21 308 118 358 7.24e-27 110
Msa1458090 AT3G51470.2 26.190 294 140 7 22 308 27 250 5.18e-25 103
Msa1458090 AT3G51470.1 26.190 294 140 7 22 308 71 294 5.80e-25 103
Msa1458090 AT1G43900.1 27.778 306 139 10 4 307 113 338 1.27e-24 102
Msa1458090 AT2G33700.1 26.014 296 141 6 23 308 84 311 3.30e-24 102
Msa1458090 AT1G67820.1 29.866 298 125 10 24 313 121 342 9.36e-24 101
Msa1458090 AT1G67820.2 29.866 298 125 10 24 313 85 306 1.20e-23 100
Msa1458090 AT1G48040.1 28.421 285 139 9 33 308 88 316 2.81e-23 99.4
Msa1458090 AT4G26080.1 26.667 300 143 5 24 308 129 366 3.02e-23 99.8
Msa1458090 AT5G53140.1 29.153 295 132 11 14 305 95 315 7.45e-23 98.6
Msa1458090 AT5G53140.2 29.153 295 132 11 14 305 95 315 7.45e-23 98.6
Msa1458090 AT3G62260.2 26.645 304 136 9 22 305 77 313 7.90e-23 98.2
Msa1458090 AT3G62260.1 26.645 304 136 9 22 305 76 312 8.22e-23 98.2
Msa1458090 AT1G07160.1 27.476 313 134 10 7 307 108 339 9.05e-23 97.8
Msa1458090 AT3G11410.1 29.123 285 149 10 19 298 100 336 1.04e-22 97.8
Msa1458090 AT5G59220.1 28.912 294 143 10 23 308 111 346 1.71e-22 97.4
Msa1458090 AT3G62260.3 27.586 290 123 8 36 305 1 223 3.65e-22 94.7
Msa1458090 AT2G40180.1 28.289 304 137 11 24 318 129 360 5.84e-22 95.5
Msa1458090 AT1G17550.1 28.000 300 154 7 24 303 189 446 1.24e-21 95.5
Msa1458090 AT1G17550.2 28.000 300 154 7 24 303 189 446 1.24e-21 95.5
Msa1458090 AT1G72770.4 28.197 305 146 8 24 303 190 446 1.27e-21 95.5
Msa1458090 AT1G72770.1 28.197 305 146 8 24 303 190 446 1.27e-21 95.5
Msa1458090 AT1G72770.3 28.197 305 146 8 24 303 190 446 1.27e-21 95.5
Msa1458090 AT5G57050.2 26.316 304 145 6 24 308 73 316 1.45e-21 94.4
Msa1458090 AT5G57050.1 26.316 304 145 6 24 308 113 356 2.60e-21 94.4
Msa1458090 AT5G51760.2 26.144 306 149 7 20 305 75 323 1.07e-20 92.0
Msa1458090 AT2G40860.4 26.644 289 144 10 31 312 302 529 1.36e-20 92.8
Msa1458090 AT5G51760.1 26.144 306 149 7 20 305 105 353 1.42e-20 92.0
Msa1458090 AT2G40860.2 26.644 289 144 10 31 312 400 627 1.79e-20 92.4
Msa1458090 AT2G40860.1 26.644 289 144 10 31 312 400 627 1.97e-20 92.4
Msa1458090 AT4G27800.3 28.136 295 167 8 22 308 58 315 2.52e-20 90.1
Msa1458090 AT4G27800.2 28.136 295 167 8 22 308 58 315 2.76e-20 90.1
Msa1458090 AT2G30020.1 26.910 301 141 10 24 318 140 367 3.30e-20 90.9
Msa1458090 AT3G17250.1 26.042 288 148 7 32 308 127 360 3.56e-20 90.9
Msa1458090 AT4G27800.1 28.041 296 166 9 22 308 58 315 4.06e-20 90.5
Msa1458090 AT1G78200.1 26.897 290 140 11 22 307 31 252 4.44e-20 89.0
Msa1458090 AT1G78200.3 26.897 290 140 11 22 307 31 252 4.44e-20 89.0
Msa1458090 AT1G78200.2 26.897 290 140 11 22 307 31 252 4.44e-20 89.0
Msa1458090 AT1G78200.5 26.545 275 131 10 36 307 1 207 3.69e-18 82.4
Msa1458090 AT1G78200.4 26.545 275 131 10 36 307 1 207 3.69e-18 82.4
Msa1458090 AT5G59220.2 32.673 202 93 6 23 216 111 277 1.16e-17 82.4
Msa1458090 AT1G18030.1 27.333 300 131 11 30 308 81 314 1.13e-16 80.1
Msa1458090 AT1G18030.2 27.273 286 121 11 30 294 81 300 4.13e-15 75.1
Msa1458090 AT5G26010.1 26.403 303 165 11 11 304 30 283 3.06e-14 72.8
Msa1458090 AT5G02760.1 30.539 167 81 6 160 305 140 292 1.57e-12 68.2
Msa1458090 AT3G02750.2 32.450 151 85 4 159 304 215 353 1.09e-11 65.9
Msa1458090 AT3G02750.1 32.450 151 85 4 159 304 215 353 1.09e-11 65.9

Find 67 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATACTTCATCTTCTTATT+AGG 0.178402 tig0039409:+223 None:intergenic
TTGTGATGAAGATGAGTTTA+TGG 0.265435 tig0039409:-773 Msa1458090:CDS
AAACTTACAGTGTTTATATC+TGG 0.272615 tig0039409:+968 None:intergenic
TTCACAAGGCATTAGGAGTT+TGG 0.312305 tig0039409:-1198 Msa1458090:intron
TTAAACCTTGCAAGAGCTAT+TGG 0.340623 tig0039409:-1426 Msa1458090:intron
GCATACTTAGCTGGAGATAT+AGG 0.353334 tig0039409:-2778 Msa1458090:CDS
TGTCATAGTTATTCAGAGAT+TGG 0.364369 tig0039409:-187 Msa1458090:three_prime_UTR
GAAAATGACCGTCTTAGATA+TGG 0.379194 tig0039409:-3844 Msa1458090:CDS
AAGTTCAGTGGGATGATAGA+AGG 0.381756 tig0039409:-2204 Msa1458090:CDS
TCCTTCTCAATCTCAAGATC+AGG 0.384503 tig0039409:+1502 None:intergenic
GGATGATAGAAGGGTTGATT+TGG 0.408042 tig0039409:-2194 Msa1458090:CDS
GTATTAACCGAGTTGATGAT+TGG 0.410347 tig0039409:-2152 Msa1458090:CDS
ATGGAGGGAGCTATCAATCT+TGG 0.415716 tig0039409:-2241 Msa1458090:CDS
GCAAGGCTGGCGTGCATCAA+TGG 0.439275 tig0039409:-3809 Msa1458090:CDS
CAATCTCAAGATCAGGTTTG+TGG 0.448649 tig0039409:+1509 None:intergenic
AGTTCATGAACTACTGTGTT+CGG 0.451450 tig0039409:-271 Msa1458090:CDS
CAGCATTTGCAACAACAACT+TGG 0.462852 tig0039409:+1846 None:intergenic
AGTTGATGATTGGGCCTTTG+AGG 0.465711 tig0039409:-2142 Msa1458090:CDS
GCATGCTGCATATACTGATC+TGG 0.467368 tig0039409:-3266 Msa1458090:CDS
TTAATACCATTGCTGCTTCG+TGG 0.468931 tig0039409:+2168 None:intergenic
GATAAGATAAACAAGTTCAG+TGG 0.469232 tig0039409:-2216 Msa1458090:CDS
TACAGTGTTTATATCTGGAT+TGG 0.469339 tig0039409:+973 None:intergenic
CTGCTTGTCAAGTCAACAAT+TGG 0.471070 tig0039409:-301 Msa1458090:CDS
CAATTGCTCTTCCTCTGCTC+AGG 0.484154 tig0039409:-4190 Msa1458090:intron
CAAGTTGTTGTTGCAAATGC+TGG 0.490892 tig0039409:-1845 Msa1458090:CDS
TGCTAGCTTGTGATGGCATA+TGG 0.491268 tig0039409:-750 Msa1458090:intron
TGTAATATCTCGGAAGGGCC+AGG 0.495009 tig0039409:-1810 Msa1458090:intron
TTAATACAGAAGATAGCAAT+GGG 0.501982 tig0039409:-3913 Msa1458090:intron
TGGAGGGAGCTATCAATCTT+GGG 0.503649 tig0039409:-2240 Msa1458090:CDS
ATGATATTGAATGCAGTACT+TGG 0.511717 tig0039409:-152 Msa1458090:three_prime_UTR
TCAGAAGAAGAAGATTGATA+AGG 0.513547 tig0039409:+4250 None:intergenic
AAGGAAAGAATCTTAAAAGC+TGG 0.515169 tig0039409:-1484 Msa1458090:CDS
CAGGCTGTGCTTCCTGAAGT+TGG 0.537802 tig0039409:+1890 None:intergenic
TTTGGCGTTTATGATGGTCA+TGG 0.539479 tig0039409:-3226 Msa1458090:CDS
TATTAACCGAGTTGATGATT+GGG 0.540196 tig0039409:-2151 Msa1458090:CDS
TTGCTTGCAATTAGTGTGAG+AGG 0.541560 tig0039409:-100 Msa1458090:three_prime_UTR
GAAATTGAATGAAGTAACTC+AGG 0.547194 tig0039409:+4276 None:intergenic
GTTTCTAATAACTGCAACAC+AGG 0.558516 tig0039409:+1871 None:intergenic
TTTAATACAGAAGATAGCAA+TGG 0.559141 tig0039409:-3914 Msa1458090:intron
TTCATGCAGGGACGAGTGAA+CGG 0.559851 tig0039409:-1453 Msa1458090:CDS
ATAAGATAAACAAGTTCAGT+GGG 0.564058 tig0039409:-2215 Msa1458090:CDS
AGTTACCAATAGCTCTTGCA+AGG 0.565687 tig0039409:+1421 None:intergenic
TGATGCGTGGTCAAAGAGGA+TGG 0.567410 tig0039409:-2260 Msa1458090:CDS
ACTCAGGCAGAAGAAGAAGA+AGG 0.574206 tig0039409:+4292 None:intergenic
TTTATGGTGCTAGCTTGTGA+TGG 0.580225 tig0039409:-757 Msa1458090:CDS
ATTCGCGTTGTGTAATATCT+CGG 0.580696 tig0039409:-1820 Msa1458090:CDS
TCAATTCATTGTAGGTGACA+TGG 0.582161 tig0039409:-1044 Msa1458090:intron
GAAAGAATCTTAAAAGCTGG+TGG 0.582557 tig0039409:-1481 Msa1458090:CDS
GCGTTGTGTAATATCTCGGA+AGG 0.584039 tig0039409:-1816 Msa1458090:CDS
GTTTATCATCAATGCAAGGC+TGG 0.589422 tig0039409:-3822 Msa1458090:CDS
TGGTCTCCACGAAGCAGCAA+TGG 0.594647 tig0039409:-2174 Msa1458090:CDS
AGTTCAGTGGGATGATAGAA+GGG 0.599134 tig0039409:-2203 Msa1458090:CDS
GCGTGGTCAAAGAGGATGGA+GGG 0.599400 tig0039409:-2256 Msa1458090:CDS
CAAAGGCCCAATCATCAACT+CGG 0.600050 tig0039409:+2145 None:intergenic
ATGATAAACCATATCTAAGA+CGG 0.602011 tig0039409:+3836 None:intergenic
ACCTGATCTTGAGATTGAGA+AGG 0.604677 tig0039409:-1503 Msa1458090:CDS
TGATGATTGGGCCTTTGAGG+AGG 0.617991 tig0039409:-2139 Msa1458090:intron
AATAGCAGAATGCTTATCGG+TGG 0.620731 tig0039409:+124 None:intergenic
TGTCAGACCTACCTCCTCAA+AGG 0.629378 tig0039409:+2128 None:intergenic
GGTCCAGCAAAATCAGAATG+AGG 0.630449 tig0039409:+1911 None:intergenic
TATGGTTTATCATCAATGCA+AGG 0.642455 tig0039409:-3826 Msa1458090:CDS
GGCGTTTATGATGGTCATGG+AGG 0.652696 tig0039409:-3223 Msa1458090:intron
AAGCATGCGTACCTGAGCAG+AGG 0.662812 tig0039409:+4179 None:intergenic
GAGATGATGCGTGGTCAAAG+AGG 0.678107 tig0039409:-2264 Msa1458090:CDS
CGTTGTGTAATATCTCGGAA+GGG 0.694273 tig0039409:-1815 Msa1458090:CDS
TGCGTGGTCAAAGAGGATGG+AGG 0.715747 tig0039409:-2257 Msa1458090:CDS
AGAATGGATGAGATGATGCG+TGG 0.759110 tig0039409:-2273 Msa1458090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTAATTTGAATTTATTTTT+TGG - tig0039409:2465-2484 Msa1458090:intron 10.0%
!!! ATCAATTATTATTTTAAGAA+AGG + tig0039409:4066-4085 None:intergenic 10.0%
!! CTTTATATATTAAAGAGAAA+AGG + tig0039409:1834-1853 None:intergenic 15.0%
!! AAACATACTTAAGTAAATTT+CGG + tig0039409:1878-1897 None:intergenic 15.0%
!! AATATTATGTCTTTATTCTT+TGG - tig0039409:3812-3831 Msa1458090:CDS 15.0%
!!! AAAATAATAATTGATTTCCT+TGG - tig0039409:4071-4090 Msa1458090:intron 15.0%
!!! AAATAATAATTGATTTCCTT+GGG - tig0039409:4072-4091 Msa1458090:intron 15.0%
!! TAAAAATCAAGAAAATGAGA+GGG + tig0039409:308-327 None:intergenic 20.0%
!! TTAAAAATCAAGAAAATGAG+AGG + tig0039409:309-328 None:intergenic 20.0%
!! TTCTGTATTAAAACAAAACA+GGG + tig0039409:486-505 None:intergenic 20.0%
!! GAATAAGATATACAAAACAA+AGG + tig0039409:1806-1825 None:intergenic 20.0%
!!! ATTTCAGATTTTAGTTTAGA+GGG + tig0039409:2078-2097 None:intergenic 20.0%
!!! TGAATTTATTTTTTGGAATC+AGG - tig0039409:2472-2491 Msa1458090:intron 20.0%
!!! GAATTTATTTTTTGGAATCA+GGG - tig0039409:2473-2492 Msa1458090:intron 20.0%
!!! TTTCTTCAGAGATTTTTTAT+AGG - tig0039409:3289-3308 Msa1458090:intron 20.0%
!!! AGATTTTTTATAGGATTTGA+GGG - tig0039409:3298-3317 Msa1458090:intron 20.0%
!! AATTGAGATATATCAAAGAT+AGG + tig0039409:3350-3369 None:intergenic 20.0%
!!! TTTGTTTTGACACTTATTAT+AGG - tig0039409:3605-3624 Msa1458090:intron 20.0%
!! TAGAAAAATAATTAAGCAGA+AGG + tig0039409:3959-3978 None:intergenic 20.0%
!! TAATACTTCATCTTCTTATT+AGG + tig0039409:4188-4207 None:intergenic 20.0%
! AAGGATTAGATAACAAAAAC+AGG + tig0039409:273-292 None:intergenic 25.0%
! TTTATACTATGAACAAATCG+AGG + tig0039409:383-402 None:intergenic 25.0%
! CTTCTGTATTAAAACAAAAC+AGG + tig0039409:487-506 None:intergenic 25.0%
! TTTAATACAGAAGATAGCAA+TGG - tig0039409:494-513 Msa1458090:intron 25.0%
! TTAATACAGAAGATAGCAAT+GGG - tig0039409:495-514 Msa1458090:intron 25.0%
! ATGATAAACCATATCTAAGA+CGG + tig0039409:575-594 None:intergenic 25.0%
!!! TGTGGTATATTTGTTGATTT+TGG - tig0039409:731-750 Msa1458090:intron 25.0%
!!! GTGGTATATTTGTTGATTTT+GGG - tig0039409:732-751 Msa1458090:intron 25.0%
! CATTGTTTGAAAAGATTCAA+AGG - tig0039409:843-862 Msa1458090:intron 25.0%
!! AAACTTAAAAGCGTAATTGA+TGG + tig0039409:909-928 None:intergenic 25.0%
!!! GATAAGTCTACTTCATTTTT+TGG - tig0039409:1164-1183 Msa1458090:CDS 25.0%
! AGGTAAGATTTGAAAATGTT+TGG - tig0039409:1205-1224 Msa1458090:intron 25.0%
! GATTATTGAGATCTGTAAAT+TGG + tig0039409:1485-1504 None:intergenic 25.0%
!! TTACCTGAAAATTTTGGATT+CGG + tig0039409:1555-1574 None:intergenic 25.0%
! TTGTGTAAATAAGTGACAAT+TGG - tig0039409:1713-1732 Msa1458090:intron 25.0%
!! GTTTTTACTGATAATCCAAA+TGG + tig0039409:1784-1803 None:intergenic 25.0%
! CATGATCATAACTAACAAAT+AGG + tig0039409:1966-1985 None:intergenic 25.0%
!! CTATTTGTTAGTTATGATCA+TGG - tig0039409:1964-1983 Msa1458090:intron 25.0%
!!! TTTCAGATTTTAGTTTAGAG+GGG + tig0039409:2077-2096 None:intergenic 25.0%
!!! CATTTCAGATTTTAGTTTAG+AGG + tig0039409:2079-2098 None:intergenic 25.0%
! CTCTAAACTAAAATCTGAAA+TGG - tig0039409:2077-2096 Msa1458090:intron 25.0%
!! ATTTTCAATACTATGCAGAA+TGG - tig0039409:2119-2138 Msa1458090:intron 25.0%
! ATAAGATAAACAAGTTCAGT+GGG - tig0039409:2193-2212 Msa1458090:CDS 25.0%
!! GACAAATCATTTTCAAAAAG+AGG + tig0039409:2764-2783 None:intergenic 25.0%
! TTTCTAAGTGATAAATCTTG+CGG - tig0039409:2816-2835 Msa1458090:CDS 25.0%
! GATTATAATTGGAAAAAGAG+GGG + tig0039409:3067-3086 None:intergenic 25.0%
! GGATTATAATTGGAAAAAGA+GGG + tig0039409:3068-3087 None:intergenic 25.0%
!!! GAGATTTTTTATAGGATTTG+AGG - tig0039409:3297-3316 Msa1458090:intron 25.0%
!!! GATTTTTTATAGGATTTGAG+GGG - tig0039409:3299-3318 Msa1458090:intron 25.0%
! GATATATCTCAATTCATTGT+AGG - tig0039409:3356-3375 Msa1458090:intron 25.0%
! AAACTTACAGTGTTTATATC+TGG + tig0039409:3443-3462 None:intergenic 25.0%
!! CACATTTTCCATTTTCTTTA+TGG - tig0039409:3515-3534 Msa1458090:intron 25.0%
! CCATGCATTATACTATTTAT+GGG + tig0039409:3546-3565 None:intergenic 25.0%
! ACCATGCATTATACTATTTA+TGG + tig0039409:3547-3566 None:intergenic 25.0%
! ATTAATAGGATTTCCATTCT+AGG - tig0039409:3772-3791 Msa1458090:intron 25.0%
! AGTGTAATTTACTCATATAG+AGG + tig0039409:3863-3882 None:intergenic 25.0%
!!! TTTGATTCTGGAATTAGTTT+CGG - tig0039409:4019-4038 Msa1458090:intron 25.0%
! AAAAATAGCAGAATGCTTAT+CGG + tig0039409:4290-4309 None:intergenic 25.0%
GAAATTGAATGAAGTAACTC+AGG + tig0039409:135-154 None:intergenic 30.0%
TCAGAAGAAGAAGATTGATA+AGG + tig0039409:161-180 None:intergenic 30.0%
! TCAGAAAACTTTTCGGTTTT+GGG + tig0039409:537-556 None:intergenic 30.0%
! ATCAGAAAACTTTTCGGTTT+TGG + tig0039409:538-557 None:intergenic 30.0%
TATGGTTTATCATCAATGCA+AGG - tig0039409:582-601 Msa1458090:intron 30.0%
TGAGAGATATTGATGTTATC+AGG - tig0039409:788-807 Msa1458090:intron 30.0%
GAGAGATATTGATGTTATCA+GGG - tig0039409:789-808 Msa1458090:intron 30.0%
TATTGATGTTATCAGGGTAA+CGG - tig0039409:795-814 Msa1458090:intron 30.0%
TGCAATTTCAGGAATATATG+TGG - tig0039409:880-899 Msa1458090:intron 30.0%
!!! TCATTTTTTGGCGTTTATGA+TGG - tig0039409:1176-1195 Msa1458090:CDS 30.0%
! TGAAAAGTGCATAAGCTTAA+GGG - tig0039409:1298-1317 Msa1458090:intron 30.0%
!! TTTGGATTGATGGTGTAAAA+TGG - tig0039409:1325-1344 Msa1458090:intron 30.0%
!! ATTGATGGTGTAAAATGGAA+TGG - tig0039409:1330-1349 Msa1458090:intron 30.0%
! TTACCGAATCCAAAATTTTC+AGG - tig0039409:1549-1568 Msa1458090:intron 30.0%
!!! GAATCCAAAATTTTCAGGTA+AGG - tig0039409:1554-1573 Msa1458090:intron 30.0%
!!! CTTCATTTTTTAGCATCTGT+TGG + tig0039409:1611-1630 None:intergenic 30.0%
AAAAATGAAGCATACTTAGC+TGG - tig0039409:1621-1640 Msa1458090:intron 30.0%
!! TAAAAAAGCTTGTTGAAGAG+AGG + tig0039409:1658-1677 None:intergenic 30.0%
!!! CTCTTCAACAAGCTTTTTTA+AGG - tig0039409:1658-1677 Msa1458090:intron 30.0%
GTCACTTATTTACACAATAC+AGG + tig0039409:1710-1729 None:intergenic 30.0%
TTACTGATAATCCAAATGGA+AGG + tig0039409:1780-1799 None:intergenic 30.0%
TACTTAAGTATGTTTCATGC+TGG - tig0039409:1883-1902 Msa1458090:CDS 30.0%
!!! TTCAGATTTTAGTTTAGAGG+GGG + tig0039409:2076-2095 None:intergenic 30.0%
AATGGAACTTAGTTATGAAC+TGG - tig0039409:2095-2114 Msa1458090:intron 30.0%
GATAAGATAAACAAGTTCAG+TGG - tig0039409:2192-2211 Msa1458090:CDS 30.0%
!! TATTAACCGAGTTGATGATT+GGG - tig0039409:2257-2276 Msa1458090:CDS 30.0%
ACAACTTAGTTGGATATACT+TGG - tig0039409:2334-2353 Msa1458090:intron 30.0%
! GTTGGATATACTTGGTAATT+AGG - tig0039409:2342-2361 Msa1458090:intron 30.0%
! AAATGATTTGTCTCTTTCTC+TGG - tig0039409:2772-2791 Msa1458090:CDS 30.0%
AAGGAAAGAATCTTAAAAGC+TGG - tig0039409:2924-2943 Msa1458090:intron 30.0%
CGGATTATAATTGGAAAAAG+AGG + tig0039409:3069-3088 None:intergenic 30.0%
! TTTCCTTGTATGCTGTATTT+TGG - tig0039409:3184-3203 Msa1458090:intron 30.0%
TACAGTGTTTATATCTGGAT+TGG + tig0039409:3438-3457 None:intergenic 30.0%
AGTTTATGTGTATCACTTAG+TGG + tig0039409:3483-3502 None:intergenic 30.0%
CCCATAAATAGTATAATGCA+TGG - tig0039409:3543-3562 Msa1458090:intron 30.0%
TTGTGATGAAGATGAGTTTA+TGG - tig0039409:3635-3654 Msa1458090:intron 30.0%
TCACAACATTCAGAATCATA+TGG + tig0039409:3708-3727 None:intergenic 30.0%
TGTCATAGTTATTCAGAGAT+TGG - tig0039409:4221-4240 Msa1458090:five_prime_UTR 30.0%
ATGATATTGAATGCAGTACT+TGG - tig0039409:4256-4275 Msa1458090:five_prime_UTR 30.0%
ATGAACAAATCGAGGAGTTA+AGG + tig0039409:375-394 None:intergenic 35.0%
! ACCGAAAAGTTTTCTGATGA+CGG - tig0039409:540-559 Msa1458090:intron 35.0%
GAAAATGACCGTCTTAGATA+TGG - tig0039409:564-583 Msa1458090:intron 35.0%
AGCCTCATTCAACATTTCTA+CGG - tig0039409:685-704 Msa1458090:intron 35.0%
!!! GGGTATTGTTTTAGTATGTG+AGG - tig0039409:706-725 Msa1458090:intron 35.0%
!! GTTTTAGTATGTGAGGATTG+TGG - tig0039409:713-732 Msa1458090:intron 35.0%
ACATCAATATCTCTCAACCA+GGG + tig0039409:784-803 None:intergenic 35.0%
AACATCAATATCTCTCAACC+AGG + tig0039409:785-804 None:intergenic 35.0%
ATTGATGTTATCAGGGTAAC+GGG - tig0039409:796-815 Msa1458090:intron 35.0%
ATCCAGTCAATTGCAATTTC+AGG - tig0039409:869-888 Msa1458090:intron 35.0%
TTCCTGAAATTGCAATTGAC+TGG + tig0039409:874-893 None:intergenic 35.0%
AATCATCATCAGCACAACAA+TGG + tig0039409:991-1010 None:intergenic 35.0%
GTATGCTGCATATACTAATC+TGG - tig0039409:1032-1051 Msa1458090:CDS 35.0%
!!! TCGTGTTTTGGTGTTTATGA+TGG - tig0039409:1066-1085 Msa1458090:intron 35.0%
TCATCAGCATACTAATGAAG+TGG + tig0039409:1097-1116 None:intergenic 35.0%
TGTTTGGCTACTTGAATTGA+TGG - tig0039409:1221-1240 Msa1458090:intron 35.0%
CACAATGGAAAGTAGACATT+TGG + tig0039409:1280-1299 None:intergenic 35.0%
! AGCTTATGCACTTTTCACAA+TGG + tig0039409:1295-1314 None:intergenic 35.0%
! GTGAAAAGTGCATAAGCTTA+AGG - tig0039409:1297-1316 Msa1458090:intron 35.0%
GGTGTAAAATGGAATGGAAT+AGG - tig0039409:1336-1355 Msa1458090:intron 35.0%
!! TATGTTTGGATTGGTGGTAT+AGG + tig0039409:1412-1431 None:intergenic 35.0%
TTTGCAAAAGTTGCAAGTGT+GGG + tig0039409:1436-1455 None:intergenic 35.0%
ATTTGCAAAAGTTGCAAGTG+TGG + tig0039409:1437-1456 None:intergenic 35.0%
! CACTTGCAACTTTTGCAAAT+AGG - tig0039409:1437-1456 Msa1458090:CDS 35.0%
!!! TCCAAAATTTTCAGGTAAGG+TGG - tig0039409:1557-1576 Msa1458090:intron 35.0%
! ACCACCTTACCTGAAAATTT+TGG + tig0039409:1561-1580 None:intergenic 35.0%
TATTTACACAATACAGGCAG+AGG + tig0039409:1704-1723 None:intergenic 35.0%
! GTGACAATTGGTTTCATGTT+TGG - tig0039409:1725-1744 Msa1458090:intron 35.0%
TGTTTCATGCTGGACTAATT+TGG - tig0039409:1893-1912 Msa1458090:CDS 35.0%
GTTTCATGCTGGACTAATTT+GGG - tig0039409:1894-1913 Msa1458090:CDS 35.0%
!! GTATTAACCGAGTTGATGAT+TGG - tig0039409:2256-2275 Msa1458090:CDS 35.0%
CAACAGTATCACAACTTAGT+TGG - tig0039409:2324-2343 Msa1458090:intron 35.0%
GCAATGAAATATCATGCTCT+TGG - tig0039409:2371-2390 Msa1458090:intron 35.0%
ACTCACATAAACAAGCATGT+CGG + tig0039409:2417-2436 None:intergenic 35.0%
GTTTCTAATAACTGCAACAC+AGG + tig0039409:2540-2559 None:intergenic 35.0%
ATTCGCGTTGTGTAATATCT+CGG - tig0039409:2588-2607 Msa1458090:intron 35.0%
!! ATTTCCATTCTAGAGTTACC+TGG + tig0039409:2619-2638 None:intergenic 35.0%
GAAAGAATCTTAAAAGCTGG+TGG - tig0039409:2927-2946 Msa1458090:intron 35.0%
TTAAACCTTGCAAGAGCTAT+TGG - tig0039409:2982-3001 Msa1458090:intron 35.0%
AAAAAAGTTCACAATCCCAG+AGG + tig0039409:3014-3033 None:intergenic 35.0%
AAAAAGAGGGGCAACAAAAA+TGG + tig0039409:3055-3074 None:intergenic 35.0%
ATCCTGAGCTAAAGATACAA+AGG + tig0039409:3119-3138 None:intergenic 35.0%
GAACCAAAATACAGCATACA+AGG + tig0039409:3190-3209 None:intergenic 35.0%
!!! CTGTATTTTGGTTCTTCACA+AGG - tig0039409:3196-3215 Msa1458090:intron 35.0%
! TCTCTGAAGAAATCAGTGTT+AGG + tig0039409:3281-3300 None:intergenic 35.0%
TCAATTCATTGTAGGTGACA+TGG - tig0039409:3364-3383 Msa1458090:intron 35.0%
GGGATCTACCATAAAGAAAA+TGG + tig0039409:3526-3545 None:intergenic 35.0%
TATGTCTTTATTCTTTGGCG+TGG - tig0039409:3817-3836 Msa1458090:CDS 35.0%
ATGTCTTTATTCTTTGGCGT+GGG - tig0039409:3818-3837 Msa1458090:CDS 35.0%
GTCTTACTATTGTTGACACT+TGG - tig0039409:3996-4015 Msa1458090:intron 35.0%
! TGATTTCCTTGGGTTATTTC+AGG - tig0039409:4082-4101 Msa1458090:intron 35.0%
! GATTTCCTTGGGTTATTTCA+GGG - tig0039409:4083-4102 Msa1458090:intron 35.0%
AGTTCATGAACTACTGTGTT+CGG - tig0039409:4137-4156 Msa1458090:intron 35.0%
GAGGAGTTAAGGAATCAAGA+AGG + tig0039409:364-383 None:intergenic 40.0%
! GCCGTCATCAGAAAACTTTT+CGG + tig0039409:544-563 None:intergenic 40.0%
GTTTATCATCAATGCAAGGC+TGG - tig0039409:586-605 Msa1458090:intron 40.0%
GCCTCATTCAACATTTCTAC+GGG - tig0039409:686-705 Msa1458090:intron 40.0%
ACCCGTAGAAATGTTGAATG+AGG + tig0039409:690-709 None:intergenic 40.0%
GCAGCATACTAACAAACGAA+AGG + tig0039409:1021-1040 None:intergenic 40.0%
GCTGCATATACTAATCTGGA+TGG - tig0039409:1036-1055 Msa1458090:intron 40.0%
!! GATGGCTCTATTTCGTGTTT+TGG - tig0039409:1054-1073 Msa1458090:intron 40.0%
TTTGGCGTTTATGATGGTCA+TGG - tig0039409:1182-1201 Msa1458090:CDS 40.0%
! CATAAGCTTAAGGGTGTGTT+TGG - tig0039409:1307-1326 Msa1458090:intron 40.0%
! TAAGGGTGTGTTTGGATTGA+TGG - tig0039409:1315-1334 Msa1458090:intron 40.0%
TGGTATAGGATGGAATGGTA+TGG + tig0039409:1398-1417 None:intergenic 40.0%
! ATTGGTGGTATAGGATGGAA+TGG + tig0039409:1403-1422 None:intergenic 40.0%
!! TTTGGATTGGTGGTATAGGA+TGG + tig0039409:1408-1427 None:intergenic 40.0%
TTGCAAAAGTTGCAAGTGTG+GGG + tig0039409:1435-1454 None:intergenic 40.0%
GCATACTTAGCTGGAGATAT+AGG - tig0039409:1630-1649 Msa1458090:intron 40.0%
GCTGTTCAAAACCTTCCATT+TGG - tig0039409:1766-1785 Msa1458090:intron 40.0%
TCATGTCTACTCGGTAATGT+TGG + tig0039409:2023-2042 None:intergenic 40.0%
TGTCACACTTCATGTCTACT+CGG + tig0039409:2032-2051 None:intergenic 40.0%
AAGTTCAGTGGGATGATAGA+AGG - tig0039409:2204-2223 Msa1458090:CDS 40.0%
AGTTCAGTGGGATGATAGAA+GGG - tig0039409:2205-2224 Msa1458090:CDS 40.0%
! GGATGATAGAAGGGTTGATT+TGG - tig0039409:2214-2233 Msa1458090:CDS 40.0%
! TTAATACCATTGCTGCTTCG+TGG + tig0039409:2243-2262 None:intergenic 40.0%
! ATACTTGGTAATTAGGTGCC+TGG - tig0039409:2349-2368 Msa1458090:intron 40.0%
GAGCATGATATTTCATTGCC+AGG + tig0039409:2370-2389 None:intergenic 40.0%
CTCACATAAACAAGCATGTC+GGG + tig0039409:2416-2435 None:intergenic 40.0%
CAGCATTTGCAACAACAACT+TGG + tig0039409:2565-2584 None:intergenic 40.0%
! CAAGTTGTTGTTGCAAATGC+TGG - tig0039409:2563-2582 Msa1458090:intron 40.0%
CGTTGTGTAATATCTCGGAA+GGG - tig0039409:2593-2612 Msa1458090:intron 40.0%
GTTACTTGACTACTGCACAT+TGG - tig0039409:2725-2744 Msa1458090:intron 40.0%
! TAACTGCAGCTCTTTTCTGT+AGG - tig0039409:2857-2876 Msa1458090:intron 40.0%
CAATCTCAAGATCAGGTTTG+TGG + tig0039409:2902-2921 None:intergenic 40.0%
ACCTGATCTTGAGATTGAGA+AGG - tig0039409:2905-2924 Msa1458090:intron 40.0%
TCCTTCTCAATCTCAAGATC+AGG + tig0039409:2909-2928 None:intergenic 40.0%
!!! CTGGTGGTTTTATTCATGCA+GGG - tig0039409:2943-2962 Msa1458090:intron 40.0%
AGTTACCAATAGCTCTTGCA+AGG + tig0039409:2990-3009 None:intergenic 40.0%
! AGCTATTGGTAACTTCCTCT+GGG - tig0039409:2996-3015 Msa1458090:intron 40.0%
! TTGGTTCTTCACAAGGCATT+AGG - tig0039409:3203-3222 Msa1458090:intron 40.0%
! TTCACAAGGCATTAGGAGTT+TGG - tig0039409:3210-3229 Msa1458090:intron 40.0%
TAGGATTTGAGGGGTGAAAT+TGG - tig0039409:3308-3327 Msa1458090:intron 40.0%
AGGATTTGAGGGGTGAAATT+GGG - tig0039409:3309-3328 Msa1458090:intron 40.0%
!! GTTACAACTTGCTTTTCAGC+AGG + tig0039409:3413-3432 None:intergenic 40.0%
! TTTATGGTGCTAGCTTGTGA+TGG - tig0039409:3651-3670 Msa1458090:intron 40.0%
TCCATTCTAGGCACACATAT+AGG - tig0039409:3784-3803 Msa1458090:intron 40.0%
TCCTCATGTATAGACACTGA+TGG - tig0039409:3887-3906 Msa1458090:CDS 40.0%
TCCATCAGTGTCTATACATG+AGG + tig0039409:3891-3910 None:intergenic 40.0%
TTCTAGACACATGTGAGTTG+AGG - tig0039409:3974-3993 Msa1458090:intron 40.0%
! GTTGACACTTGGTTTGATTC+TGG - tig0039409:4007-4026 Msa1458090:intron 40.0%
TTTAAGAAAGGCAGTACGAG+AGG + tig0039409:4054-4073 None:intergenic 40.0%
CTGCTTGTCAAGTCAACAAT+TGG - tig0039409:4107-4126 Msa1458090:intron 40.0%
AATAGCAGAATGCTTATCGG+TGG + tig0039409:4287-4306 None:intergenic 40.0%
TTGCTTGCAATTAGTGTGAG+AGG - tig0039409:4308-4327 Msa1458090:five_prime_UTR 40.0%
ACTCAGGCAGAAGAAGAAGA+AGG + tig0039409:119-138 None:intergenic 45.0%
GAGAGGGACGATGATTGAAA+AGG + tig0039409:292-311 None:intergenic 45.0%
!! TGATTTTGGGCACTGCGTAA+TGG - tig0039409:745-764 Msa1458090:intron 45.0%
!! GATTTTGGGCACTGCGTAAT+GGG - tig0039409:746-765 Msa1458090:intron 45.0%
CTCAACCAGGGTGATAAGTT+AGG + tig0039409:772-791 None:intergenic 45.0%
GCATGCTGCATATACTGATC+TGG - tig0039409:1142-1161 Msa1458090:intron 45.0%
AGTGTGGGGTATGTTTGGAT+TGG + tig0039409:1421-1440 None:intergenic 45.0%
TTGCAAGTGTGGGGTATGTT+TGG + tig0039409:1426-1445 None:intergenic 45.0%
GCTGGACTAATTTGGGAGTA+TGG - tig0039409:1901-1920 Msa1458090:CDS 45.0%
!! CTACTCGGTAATGTTGGTTC+TGG + tig0039409:2017-2036 None:intergenic 45.0%
AGAATGGATGAGATGATGCG+TGG - tig0039409:2135-2154 Msa1458090:intron 45.0%
ATGGAGGGAGCTATCAATCT+TGG - tig0039409:2167-2186 Msa1458090:CDS 45.0%
TGGAGGGAGCTATCAATCTT+GGG - tig0039409:2168-2187 Msa1458090:CDS 45.0%
CAAAGGCCCAATCATCAACT+CGG + tig0039409:2266-2285 None:intergenic 45.0%
!! AGTTGATGATTGGGCCTTTG+AGG - tig0039409:2266-2285 Msa1458090:CDS 45.0%
GAGGTAGGTCTGACATTTGA+AGG - tig0039409:2288-2307 Msa1458090:intron 45.0%
! GGACCTCATTCTGATTTTGC+TGG - tig0039409:2494-2513 Msa1458090:intron 45.0%
GGTCCAGCAAAATCAGAATG+AGG + tig0039409:2500-2519 None:intergenic 45.0%
! GATTTTGCTGGACCAACTTC+AGG - tig0039409:2506-2525 Msa1458090:intron 45.0%
GCGTTGTGTAATATCTCGGA+AGG - tig0039409:2592-2611 Msa1458090:intron 45.0%
!!! GCTGGTGGTTTTATTCATGC+AGG - tig0039409:2942-2961 Msa1458090:intron 45.0%
! GAGCTATTGGTAACTTCCTC+TGG - tig0039409:2995-3014 Msa1458090:intron 45.0%
TTCCAATTATAATCCGCCCC+CGG - tig0039409:3073-3092 Msa1458090:intron 45.0%
! GGCCTTTGTATCTTTAGCTC+AGG - tig0039409:3114-3133 Msa1458090:intron 45.0%
! TGCTAGCTTGTGATGGCATA+TGG - tig0039409:3658-3677 Msa1458090:intron 45.0%
GCCTATATGTGTGCCTAGAA+TGG + tig0039409:3788-3807 None:intergenic 45.0%
!!! AATTTTTTATAAATTGATTA+AGG - tig0039409:650-669 Msa1458090:intron 5.0%
!! ATTAAAATGTAATAATTAAT+AGG - tig0039409:3758-3777 Msa1458090:intron 5.0%
CAATTGCTCTTCCTCTGCTC+AGG - tig0039409:218-237 Msa1458090:exon 50.0%
ATGGGCCTAACTTATCACCC+TGG - tig0039409:764-783 Msa1458090:CDS 50.0%
GGCGTTTATGATGGTCATGG+AGG - tig0039409:1185-1204 Msa1458090:CDS 50.0%
! GTGGGGTATGTTTGGATTGG+TGG + tig0039409:1418-1437 None:intergenic 50.0%
GAGATGATGCGTGGTCAAAG+AGG - tig0039409:2144-2163 Msa1458090:CDS 50.0%
TGATGCGTGGTCAAAGAGGA+TGG - tig0039409:2148-2167 Msa1458090:CDS 50.0%
! TGATGATTGGGCCTTTGAGG+AGG - tig0039409:2269-2288 Msa1458090:CDS 50.0%
TGTCAGACCTACCTCCTCAA+AGG + tig0039409:2283-2302 None:intergenic 50.0%
TGTAATATCTCGGAAGGGCC+AGG - tig0039409:2598-2617 Msa1458090:intron 50.0%
! AGGGCCAGGTAACTCTAGAA+TGG - tig0039409:2612-2631 Msa1458090:intron 50.0%
TTCATGCAGGGACGAGTGAA+CGG - tig0039409:2955-2974 Msa1458090:intron 50.0%
TCCAATTATAATCCGCCCCC+GGG - tig0039409:3074-3093 Msa1458090:intron 50.0%
GCAGTCCCTGAAATAACCCA+AGG + tig0039409:4091-4110 None:intergenic 50.0%
AAGCATGCGTACCTGAGCAG+AGG + tig0039409:232-251 None:intergenic 55.0%
TGCGTGGTCAAAGAGGATGG+AGG - tig0039409:2151-2170 Msa1458090:CDS 55.0%
GCGTGGTCAAAGAGGATGGA+GGG - tig0039409:2152-2171 Msa1458090:CDS 55.0%
TGGTCTCCACGAAGCAGCAA+TGG - tig0039409:2234-2253 Msa1458090:CDS 55.0%
! GATTGGGCCTTTGAGGAGGT+AGG - tig0039409:2273-2292 Msa1458090:CDS 55.0%
CAGGCTGTGCTTCCTGAAGT+TGG + tig0039409:2521-2540 None:intergenic 55.0%
!! ACCCGGGGGCGGATTATAAT+TGG + tig0039409:3078-3097 None:intergenic 55.0%
AGATACAAAGGCCCTTGCCC+AGG + tig0039409:3107-3126 None:intergenic 55.0%
GCAAGGCTGGCGTGCATCAA+TGG - tig0039409:599-618 Msa1458090:intron 60.0%
TTGCCCAGGTTGCTCACCCG+GGG + tig0039409:3093-3112 None:intergenic 65.0%
CTTGCCCAGGTTGCTCACCC+GGG + tig0039409:3094-3113 None:intergenic 65.0%
CCTTGCCCAGGTTGCTCACC+CGG + tig0039409:3095-3114 None:intergenic 65.0%
CGGGTGAGCAACCTGGGCAA+GGG - tig0039409:3093-3112 Msa1458090:intron 65.0%
TGCCCAGGTTGCTCACCCGG+GGG + tig0039409:3092-3111 None:intergenic 70.0%
CCGGGTGAGCAACCTGGGCA+AGG - tig0039409:3092-3111 Msa1458090:intron 70.0%
CCAGGTTGCTCACCCGGGGG+CGG + tig0039409:3089-3108 None:intergenic 75.0%
CGCCCCCGGGTGAGCAACCT+GGG - tig0039409:3087-3106 Msa1458090:intron 75.0%
! CCGCCCCCGGGTGAGCAACC+TGG - tig0039409:3086-3105 Msa1458090:intron 80.0%
Chromosome Type Strat End Strand Name
tig0039409 gene 51 4379 51 ID=Msa1458090;Name=Msa1458090
tig0039409 mRNA 51 4379 51 ID=Msa1458090-mRNA-1;Parent=Msa1458090;Name=Msa1458090-mRNA-1;_AED=0.13;_eAED=0.13;_QI=198|0.8|0.81|0.90|0.8|0.81|11|179|323
tig0039409 exon 51 326 51 ID=Msa1458090-mRNA-1:exon:21612;Parent=Msa1458090-mRNA-1
tig0039409 exon 751 803 751 ID=Msa1458090-mRNA-1:exon:21611;Parent=Msa1458090-mRNA-1
tig0039409 exon 976 1052 976 ID=Msa1458090-mRNA-1:exon:21610;Parent=Msa1458090-mRNA-1
tig0039409 exon 1156 1205 1156 ID=Msa1458090-mRNA-1:exon:21609;Parent=Msa1458090-mRNA-1
tig0039409 exon 1427 1551 1427 ID=Msa1458090-mRNA-1:exon:21608;Parent=Msa1458090-mRNA-1
tig0039409 exon 1811 1936 1811 ID=Msa1458090-mRNA-1:exon:21607;Parent=Msa1458090-mRNA-1
tig0039409 exon 2140 2293 2140 ID=Msa1458090-mRNA-1:exon:21606;Parent=Msa1458090-mRNA-1
tig0039409 exon 2751 2859 2751 ID=Msa1458090-mRNA-1:exon:21605;Parent=Msa1458090-mRNA-1
tig0039409 exon 3224 3287 3224 ID=Msa1458090-mRNA-1:exon:21604;Parent=Msa1458090-mRNA-1
tig0039409 exon 3801 3926 3801 ID=Msa1458090-mRNA-1:exon:21603;Parent=Msa1458090-mRNA-1
tig0039409 exon 4191 4379 4191 ID=Msa1458090-mRNA-1:exon:21602;Parent=Msa1458090-mRNA-1
tig0039409 five_prime_UTR 4191 4379 4191 ID=Msa1458090-mRNA-1:five_prime_utr;Parent=Msa1458090-mRNA-1
tig0039409 five_prime_UTR 3918 3926 3918 ID=Msa1458090-mRNA-1:five_prime_utr;Parent=Msa1458090-mRNA-1
tig0039409 CDS 3801 3917 3801 ID=Msa1458090-mRNA-1:cds;Parent=Msa1458090-mRNA-1
tig0039409 CDS 3224 3287 3224 ID=Msa1458090-mRNA-1:cds;Parent=Msa1458090-mRNA-1
tig0039409 CDS 2751 2859 2751 ID=Msa1458090-mRNA-1:cds;Parent=Msa1458090-mRNA-1
tig0039409 CDS 2140 2293 2140 ID=Msa1458090-mRNA-1:cds;Parent=Msa1458090-mRNA-1
tig0039409 CDS 1811 1936 1811 ID=Msa1458090-mRNA-1:cds;Parent=Msa1458090-mRNA-1
tig0039409 CDS 1427 1551 1427 ID=Msa1458090-mRNA-1:cds;Parent=Msa1458090-mRNA-1
tig0039409 CDS 1156 1205 1156 ID=Msa1458090-mRNA-1:cds;Parent=Msa1458090-mRNA-1
tig0039409 CDS 976 1052 976 ID=Msa1458090-mRNA-1:cds;Parent=Msa1458090-mRNA-1
tig0039409 CDS 751 803 751 ID=Msa1458090-mRNA-1:cds;Parent=Msa1458090-mRNA-1
tig0039409 CDS 230 326 230 ID=Msa1458090-mRNA-1:cds;Parent=Msa1458090-mRNA-1
tig0039409 three_prime_UTR 51 229 51 ID=Msa1458090-mRNA-1:three_prime_utr;Parent=Msa1458090-mRNA-1
Gene Sequence

>Msa1458090

ATGGGAATATATCTCAGCACTCCCAAAACCGAAAAGTTTTCTGATGACGGCGAAAATGACCGTCTTAGATATGGTTTATCATCAATGCAAGGCTGGCGTGCATCAATGGAAGATGCTCATGCTGCATATACTGATCTGGATAAGTCTACTTCATTTTTTGGCGTTTATGATGGTCATGGAGGTAAGGTGGTTGCAAAGTTTTGTGCTAAGTTTCTTCACCAACAGATGCTAAAAAATGAAGCATACTTAGCTGGAGATATAGGAACCTCTCTTCAACAAGCTTTTTTAAGAATGGATGAGATGATGCGTGGTCAAAGAGGATGGAGGGAGCTATCAATCTTGGGAGATAAGATAAACAAGTTCAGTGGGATGATAGAAGGGTTGATTTGGTCTCCACGAAGCAGCAATGGTATTAACCGAGTTGATGATTGGGCCTTTGAGGAGGGACCTCATTCTGATTTTGCTGGACCAACTTCAGGAAGCACAGCCTGTGTTGCAGTTATTAGAAACAACCAAGTTGTTGTTGCAAATGCTGGTGATTCGCGTTGTGTAATATCTCGGAAGGGCCAGGCATACAATTTGTCTAGAGACCACAAACCTGATCTTGAGATTGAGAAGGAAAGAATCTTAAAAGCTGGTGGTTTTATTCATGCAGGGACGAGTGAACGGCAGTTTAAACCTTGCAAGAGCTATTGGAGTTTGGTTTCAAAACACATTCAAAGATTTCAAATTTGTATAGCTGTCTGTGACATGGAATTTAAACAGAATAAATTTCTTCCTGCTGAAAAGCAAGTTGTAACTGCCAATCCAGATATAAACACTGTTGAGCTTTGTGATGAAGATGAGTTTATGGTGCTAGCTTGTGATGGCATATGGGACTGCTTGTCAAGTCAACAATTGGTAGATTTAGTTCATGAACTACTGTGTTCGGTGAGATCTAAGTTTTTAATTTCTTTCCTAATAAGAAGATGA

Protein sequence

>Msa1458090

MGIYLSTPKTEKFSDDGENDRLRYGLSSMQGWRASMEDAHAAYTDLDKSTSFFGVYDGHGGKVVAKFCAKFLHQQMLKNEAYLAGDIGTSLQQAFLRMDEMMRGQRGWRELSILGDKINKFSGMIEGLIWSPRSSNGINRVDDWAFEEGPHSDFAGPTSGSTACVAVIRNNQVVVANAGDSRCVISRKGQAYNLSRDHKPDLEIEKERILKAGGFIHAGTSERQFKPCKSYWSLVSKHIQRFQICIAVCDMEFKQNKFLPAEKQVVTANPDINTVELCDEDEFMVLACDGIWDCLSSQQLVDLVHELLCSVRSKFLISFLIRR*