AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0653840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0653840 MtrunA17_Chr4g0048391 99.150 588 5 0 1 588 1 588 0.0 1209
Msa0653840 MtrunA17_Chr8g0387211 83.220 590 78 3 3 588 1 573 0.0 1007
Msa0653840 MtrunA17_Chr1g0196061 53.765 571 259 1 23 588 11 581 0.0 647
Msa0653840 MtrunA17_Chr7g0251831 54.737 570 249 3 26 588 4 571 0.0 631
Msa0653840 MtrunA17_Chr5g0427061 50.868 576 274 4 21 588 42 616 0.0 557
Msa0653840 MtrunA17_Chr3g0133241 50.000 580 274 5 24 588 15 593 0.0 555
Msa0653840 MtrunA17_Chr5g0436511 32.155 594 370 13 15 588 2 582 5.84e-88 284
Msa0653840 MtrunA17_Chr3g0113151 30.494 587 372 10 28 588 17 593 2.89e-76 253
Msa0653840 MtrunA17_Chr8g0364131 28.597 556 322 14 50 588 9 506 3.72e-57 200
Msa0653840 MtrunA17_Chr5g0439771 52.427 103 44 1 54 151 17 119 6.45e-29 111
Msa0653840 MtrunA17_Chr2g0286991 23.221 534 312 16 26 539 11 466 4.21e-21 97.4
Msa0653840 MtrunA17_Chr1g0152951 24.632 475 247 18 19 475 57 438 3.33e-17 85.1
Msa0653840 MtrunA17_Chr7g0272131 25.512 537 311 23 18 521 38 518 2.21e-13 73.2
Msa0653840 MtrunA17_Chr4g0053361 23.503 451 254 18 18 428 38 437 3.03e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0653840 AT3G62980.1 56.460 565 241 1 26 585 9 573 0.0 638
Msa0653840 AT1G12820.1 54.181 574 252 3 26 588 4 577 0.0 632
Msa0653840 AT3G26810.1 54.450 573 250 4 26 588 4 575 0.0 622
Msa0653840 AT4G03190.1 52.734 567 264 1 26 588 5 571 0.0 603
Msa0653840 AT4G24390.2 51.313 571 265 4 28 588 56 623 0.0 578
Msa0653840 AT4G24390.1 51.313 571 265 4 28 588 56 623 0.0 578
Msa0653840 AT5G49980.1 50.859 582 277 4 15 588 39 619 0.0 568
Msa0653840 AT2G39940.1 31.779 579 369 9 28 588 18 588 1.30e-94 301
Msa0653840 AT4G15475.1 24.528 530 308 17 26 538 11 465 1.29e-21 99.4
Msa0653840 AT3G07550.1 24.122 427 224 18 11 416 2 349 1.85e-11 66.6
Msa0653840 AT3G07550.2 24.122 427 224 18 11 416 2 349 1.85e-11 66.6

Find 167 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACACCCTTTCTGGTTTA+TGG 0.081215 4_3:+62052300 Msa0653840:CDS
TCCAATGATGTAAAGCTTTC+TGG 0.105464 4_3:-62052038 None:intergenic
TCAACTTGGTTCCTGCAAAT+TGG 0.172792 4_3:+62050346 Msa0653840:CDS
AGAGAAAGAGCTTTGAAATT+AGG 0.185626 4_3:-62050489 None:intergenic
AGAAGTCTTCACACCCTTTC+TGG 0.194538 4_3:+62052293 Msa0653840:CDS
TCACACCCTTTCTGGTTTAT+GGG 0.221558 4_3:+62052301 Msa0653840:CDS
TTTGGTATTGGTTGAAATCT+AGG 0.226471 4_3:+62055148 Msa0653840:three_prime_UTR
CAACTTGGTTCCTGCAAATT+GGG 0.244113 4_3:+62050347 Msa0653840:CDS
AAAATCTTGTATTTGATTAC+AGG 0.250924 4_3:+62055008 Msa0653840:three_prime_UTR
GTCCTAATCTTCGACGCCTT+TGG 0.252400 4_3:+62052438 Msa0653840:CDS
CCATTGAATGCTACCGTATA+TGG 0.254145 4_3:+62054681 Msa0653840:three_prime_UTR
CCCAGAAAGCTTTACATCAT+TGG 0.287120 4_3:+62052037 Msa0653840:CDS
ATTATGAAGGCTCAATAATA+TGG 0.291004 4_3:+62054720 Msa0653840:three_prime_UTR
ACAATCAATAGCTACGTTTC+AGG 0.291369 4_3:-62054793 None:intergenic
TATGTTTATCGTTCTGTTGC+TGG 0.293070 4_3:+62053270 Msa0653840:CDS
TCCTAATCTTCGACGCCTTT+GGG 0.296633 4_3:+62052439 Msa0653840:CDS
AGTGTAACACTTCTTATGTT+TGG 0.320668 4_3:-62050297 None:intergenic
GGTTCGCCCGTCTGGTAATC+TGG 0.336502 4_3:-62052850 None:intergenic
GAAAGAAAAGAAACTTCAAT+TGG 0.347122 4_3:-62049987 None:intergenic
GGCTGTTAGTGATGAAAGTT+TGG 0.351341 4_3:+62050446 Msa0653840:CDS
AATGGAGGTGCATCCCTTCT+TGG 0.351887 4_3:-62053294 None:intergenic
GTGTTGAAATATGTGTATTC+AGG 0.360970 4_3:+62055108 Msa0653840:three_prime_UTR
GCACACGGGGTTACTGAATC+AGG 0.363016 4_3:+62052682 Msa0653840:CDS
GTCTGGTAATCTGGCTGACC+AGG 0.366595 4_3:-62052841 None:intergenic
ACCTGACATTTGAGTATATA+GGG 0.370498 4_3:+62052950 Msa0653840:CDS
CCAATGATGTAAAGCTTTCT+GGG 0.380230 4_3:-62052037 None:intergenic
GAACCTATGGACGAGGCCTT+TGG 0.384341 4_3:+62052868 Msa0653840:CDS
CAGCTCTGTGAGCTTGGTAC+TGG 0.385066 4_3:+62052206 Msa0653840:CDS
CGTCCATAGGTTCGCCCGTC+TGG 0.387172 4_3:-62052858 None:intergenic
AGACAGAAGCTCAGTTTCAT+TGG 0.392214 4_3:+62050176 Msa0653840:CDS
CTCCAAAGGCTTGCTGTGTC+AGG 0.396046 4_3:+62052916 Msa0653840:CDS
TCGATGACAAAAGTGGTAAT+TGG 0.397483 4_3:+62052003 Msa0653840:CDS
ACAGGATAATGAATGCTAGA+AGG 0.398073 4_3:+62055049 Msa0653840:three_prime_UTR
TATGCGCACTTTGCCATATA+CGG 0.408105 4_3:-62054694 None:intergenic
AATAGCTACGTTTCAGGCAT+TGG 0.416462 4_3:-62054787 None:intergenic
TTGAGGAGGGCGCTGCACAC+GGG 0.416863 4_3:+62052668 Msa0653840:CDS
ACACGTTCCAACACTTCATC+TGG 0.420875 4_3:-62050129 None:intergenic
ATATCAGCACCCCAATTTGC+AGG 0.422242 4_3:-62050357 None:intergenic
GTGTGCAGCGCCCTCCTCAA+AGG 0.422333 4_3:-62052665 None:intergenic
GAAGTGTTGGAACGTGTTCT+TGG 0.425811 4_3:+62050135 Msa0653840:CDS
CCAGTCCTTCGTTGAACCTC+AGG 0.429146 4_3:+62053343 Msa0653840:three_prime_UTR
AGAAGGAGGTGATGATAGTC+AGG 0.433187 4_3:+62053236 Msa0653840:CDS
AGCCTTAACTCTTCAAGAAA+AGG 0.433803 4_3:-62050414 None:intergenic
CGAAGTTTACATCATTGCTT+AGG 0.435730 4_3:-62052079 None:intergenic
ACCCAAAGGCGTCGAAGATT+AGG 0.441455 4_3:-62052440 None:intergenic
TGGATTTAGCACTGATGGCT+TGG 0.443514 4_3:+62050524 Msa0653840:CDS
TTACCAGACGGGCGAACCTA+TGG 0.446961 4_3:+62052855 Msa0653840:CDS
GCTGCGAAAACTTGAGATAA+GGG 0.450178 4_3:+62053062 Msa0653840:CDS
TTTGAGGAGGGCGCTGCACA+CGG 0.456573 4_3:+62052667 Msa0653840:CDS
CCATATACGGTAGCATTCAA+TGG 0.457441 4_3:-62054681 None:intergenic
AGAGTTAAGGCTTAAGAGAA+TGG 0.457818 4_3:+62050425 Msa0653840:CDS
TTTCATTGGTATGCAAAGAA+TGG 0.457884 4_3:+62050190 Msa0653840:CDS
CTTGCCTTCTTTAGACCACT+TGG 0.458373 4_3:+62054910 Msa0653840:three_prime_UTR
CTTTGTTGGAAGACAAAACA+TGG 0.458729 4_3:+62049833 Msa0653840:five_prime_UTR
AACCTGACACAGCAAGCCTT+TGG 0.459468 4_3:-62052918 None:intergenic
GGGGTGCTGATATTCATTCA+TGG 0.461105 4_3:+62050367 Msa0653840:CDS
TGTGCAGCGCCCTCCTCAAA+GGG 0.461411 4_3:-62052664 None:intergenic
TTTCAGAGAGTGAGAACAAA+TGG 0.469459 4_3:-62053312 None:intergenic
GTTTACATCATTGCTTAGGT+TGG 0.470344 4_3:-62052075 None:intergenic
TCCCTATATACTCAAATGTC+AGG 0.472134 4_3:-62052951 None:intergenic
GCTCCTCAGCTCTGTGAGCT+TGG 0.474654 4_3:+62052200 Msa0653840:CDS
ATACATCAATGCAAAGGATA+AGG 0.474911 4_3:+62054827 Msa0653840:three_prime_UTR
AAAGAAAAGAAACTTCAATT+GGG 0.475303 4_3:-62049986 None:intergenic
CCCTCCTCAAAGGGATCCCC+AGG 0.475568 4_3:-62052655 None:intergenic
TGCTGATATTCATTCATGGT+TGG 0.476550 4_3:+62050371 Msa0653840:CDS
TTTGAAATTAGGAAAAGAAA+AGG 0.478989 4_3:-62050478 None:intergenic
GACTGCAAAGTGACGATGAA+TGG 0.480292 4_3:+62053159 Msa0653840:CDS
AAGCCTTTGGAGTTTAGTGC+AGG 0.480883 4_3:-62052905 None:intergenic
CGGCTCTGCATCATGACCCC+TGG 0.482603 4_3:+62052823 Msa0653840:CDS
AAGTGTTGGAACGTGTTCTT+GGG 0.483900 4_3:+62050136 Msa0653840:CDS
AGCTGCGAAAACTTGAGATA+AGG 0.491311 4_3:+62053061 Msa0653840:CDS
GTTGAAGTGATGCAGGAAGA+AGG 0.492159 4_3:+62053219 Msa0653840:CDS
AGATTTCAACCAATACCAAA+AGG 0.492810 4_3:-62055145 None:intergenic
CCTGGGGATCCCTTTGAGGA+GGG 0.495250 4_3:+62052655 Msa0653840:CDS
AACAGTAGCAACAGCAGCAT+TGG 0.495798 4_3:-62052770 None:intergenic
TGTTAGCACAAGAAAGGCCT+AGG 0.496849 4_3:+62053190 Msa0653840:CDS
TCATCTGACGGCAAAAGTAT+AGG 0.497985 4_3:-62052747 None:intergenic
AGCCGAAAATGAGTAAAGTC+GGG 0.498384 4_3:-62052805 None:intergenic
AAAGTCAGATTTGTGCATGC+AGG 0.502622 4_3:-62052356 None:intergenic
GGGTTTATTGCTGTCTCTGA+AGG 0.505827 4_3:+62052703 Msa0653840:CDS
GAGATAAGGGACAGTCCATT+CGG 0.509689 4_3:+62053075 Msa0653840:CDS
GCTCCAAAGGCCTCGTCCAT+AGG 0.509988 4_3:-62052871 None:intergenic
CCTGAGGTTCAACGAAGGAC+TGG 0.510930 4_3:-62053343 None:intergenic
GACCTGACATTTGAGTATAT+AGG 0.511207 4_3:+62052949 Msa0653840:CDS
AATCTACGTGTCAAGATCTC+AGG 0.511329 4_3:-62050273 None:intergenic
CAGGATAATGAATGCTAGAA+GGG 0.514090 4_3:+62055050 Msa0653840:three_prime_UTR
TCCTGGGGATCCCTTTGAGG+AGG 0.517046 4_3:+62052654 Msa0653840:CDS
ATGAGAGTGATGATAGAGAA+AGG 0.518697 4_3:-62049665 None:intergenic
ATGGAAGATGGAAGGAAGAA+AGG 0.518814 4_3:+62054739 Msa0653840:three_prime_UTR
AACTTGGTTCCTGCAAATTG+GGG 0.521996 4_3:+62050348 Msa0653840:CDS
AGGCTCAATAATATGGAAGA+TGG 0.523275 4_3:+62054727 Msa0653840:three_prime_UTR
CTTAACTGAACTTGACATAC+AGG 0.524884 4_3:+62051971 Msa0653840:CDS
ATGAGTCAATGAGGTCACTT+TGG 0.525296 4_3:+62053130 Msa0653840:CDS
AAACTTGGAAACACTTTCAG+TGG 0.526917 4_3:+62052984 Msa0653840:CDS
TTGGGCAATGCAATGTGTAC+TGG 0.527001 4_3:+62053026 Msa0653840:CDS
TTCTGTTGCTGGACCAAGAA+GGG 0.527558 4_3:+62053281 Msa0653840:CDS
TGTGATGGATTTAGCACTGA+TGG 0.530648 4_3:+62050519 Msa0653840:CDS
GGAGGTGATGATAGTCAGGC+TGG 0.533488 4_3:+62053240 Msa0653840:CDS
GAGCCGAAAATGAGTAAAGT+CGG 0.533812 4_3:-62052806 None:intergenic
AGCAACCCATAAACCAGAAA+GGG 0.538248 4_3:-62052306 None:intergenic
ATAGGACGTAGTGTAGCTTC+CGG 0.538684 4_3:-62052729 None:intergenic
TTGCTGTCTCTGAAGGATGC+CGG 0.538728 4_3:+62052710 Msa0653840:CDS
TTGAACCTCAGGAAAGTCCT+TGG 0.539550 4_3:+62053354 Msa0653840:three_prime_UTR
GGTAGAGTGCAAGAGAAAGA+AGG 0.541481 4_3:+62050059 Msa0653840:CDS
TTATTGTGTGTCTCTCTCGC+CGG 0.542900 4_3:-62054854 None:intergenic
ATAAGAAGTGTTACACTGAA+AGG 0.544660 4_3:+62050303 Msa0653840:CDS
TGCTGCTGTTGCTACTGTTG+TGG 0.545043 4_3:+62052774 Msa0653840:CDS
GGTCTTAACAACTGCTCCAA+AGG 0.546055 4_3:-62052884 None:intergenic
ATCATATTGTCCATTGCTTG+AGG 0.546358 4_3:+62052618 Msa0653840:CDS
ATCTGATAAATAAGAAGATG+AGG 0.551841 4_3:-62049743 None:intergenic
CACAGTTGAAGACAAGGGAC+TGG 0.553399 4_3:+62052585 Msa0653840:CDS
GTAGATTGTTAGCACAAGAA+AGG 0.553487 4_3:+62053184 Msa0653840:CDS
TATGCTCCTCTTGACAGTGA+TGG 0.555225 4_3:+62052392 Msa0653840:CDS
AATGGTACAACGCTGAAAGA+TGG 0.557820 4_3:+62050208 Msa0653840:CDS
ATCAAAATGTCTTCAACATG+CGG 0.558575 4_3:-62055079 None:intergenic
GTTGAATGTTGAAGTGATGC+AGG 0.558963 4_3:+62053212 Msa0653840:CDS
GATGAGGTAGAAGAAGAAGA+AGG 0.560919 4_3:-62049727 None:intergenic
TAGAGACTAATCTCTCAAGC+TGG 0.561593 4_3:+62055263 Msa0653840:three_prime_UTR
GACAAGGGACTGGAAGCTGT+TGG 0.564143 4_3:+62052595 Msa0653840:CDS
TCTGGTAATCTGGCTGACCA+GGG 0.566207 4_3:-62052840 None:intergenic
CGCTCGAGAAACTTGTCGCT+AGG 0.566311 4_3:+62052105 Msa0653840:CDS
AAGTCAGATTTGTGCATGCA+GGG 0.569612 4_3:-62052355 None:intergenic
TGAGGAGGGCGCTGCACACG+GGG 0.570885 4_3:+62052669 Msa0653840:CDS
GGTTAACAAAAGCGTAACAC+TGG 0.573261 4_3:+62052151 Msa0653840:CDS
AAGCAACCCATAAACCAGAA+AGG 0.574385 4_3:-62052307 None:intergenic
GGTCAGCCAGATTACCAGAC+GGG 0.579389 4_3:+62052844 Msa0653840:CDS
AGCGAACAAGAAGCTTAGAA+AGG 0.581045 4_3:-62052415 None:intergenic
GCTCACAGAGCTGAGGAGCA+CGG 0.584117 4_3:-62052196 None:intergenic
GAACTTGACATACAGGAGAA+TGG 0.585101 4_3:+62051978 Msa0653840:CDS
GATTTCAACCAATACCAAAA+GGG 0.585529 4_3:-62055144 None:intergenic
GGGTCCAAGTGGTCTAAAGA+AGG 0.585601 4_3:-62054914 None:intergenic
AATGAGGTCACTTTGGATGT+CGG 0.587841 4_3:+62053137 Msa0653840:CDS
ACACGTAGCTCCTCAAGCAA+TGG 0.587975 4_3:-62052628 None:intergenic
ATGCAAAGGATAAGGAAGGC+CGG 0.589316 4_3:+62054835 Msa0653840:three_prime_UTR
CACACGGGGTTACTGAATCA+GGG 0.590850 4_3:+62052683 Msa0653840:CDS
TGCATGCAGGGTATAGAACT+TGG 0.591316 4_3:-62052343 None:intergenic
TCAATAATATGGAAGATGGA+AGG 0.592522 4_3:+62054731 Msa0653840:three_prime_UTR
AGTGCGCATACTGATTATGA+AGG 0.597755 4_3:+62054707 Msa0653840:three_prime_UTR
GTGTTGATACATCAATGCAA+AGG 0.602409 4_3:+62054821 Msa0653840:three_prime_UTR
AAAAGTGCGGCATTGCCGAA+TGG 0.605142 4_3:-62053090 None:intergenic
GACGGGCGAACCTATGGACG+AGG 0.613400 4_3:+62052861 Msa0653840:CDS
TTGACAAGTATGAGTCAATG+AGG 0.615233 4_3:+62053121 Msa0653840:CDS
CAGCAGCATTGGTCATCTGA+CGG 0.617061 4_3:-62052759 None:intergenic
ATCAATGCAAAGGATAAGGA+AGG 0.617513 4_3:+62054831 Msa0653840:three_prime_UTR
GTTCAACGAAGGACTGGAGA+TGG 0.620791 4_3:-62053337 None:intergenic
GTTGGAACGTGTTCTTGGGA+TGG 0.625125 4_3:+62050140 Msa0653840:CDS
GTACCAAGCTCACAGAGCTG+AGG 0.638389 4_3:-62052203 None:intergenic
TATTACCAAGGACTTTCCTG+AGG 0.642295 4_3:-62053359 None:intergenic
AATGGCGTCGATGACAAAAG+TGG 0.644211 4_3:+62051996 Msa0653840:CDS
GAAAGGCCATCACTGTCAAG+AGG 0.644436 4_3:-62052398 None:intergenic
CTGGTAATCTGGCTGACCAG+GGG 0.645030 4_3:-62052839 None:intergenic
GTTCTGTTGCTGGACCAAGA+AGG 0.646237 4_3:+62053280 Msa0653840:CDS
AGACCTGCACTAAACTCCAA+AGG 0.647440 4_3:+62052902 Msa0653840:CDS
GTCTCTACGATTGCGCACAA+AGG 0.648866 4_3:-62055247 None:intergenic
TGGTCAGCCAGATTACCAGA+CGG 0.649601 4_3:+62052843 Msa0653840:CDS
GCAATGCAATGTGTACTGGT+TGG 0.650372 4_3:+62053030 Msa0653840:CDS
ATTGGACACAGTTGAAGACA+AGG 0.658409 4_3:+62052579 Msa0653840:CDS
CAGAGAGTGAGAACAAATGG+AGG 0.669946 4_3:-62053309 None:intergenic
ACAACGCTGAAAGATGGTCA+AGG 0.670965 4_3:+62050214 Msa0653840:CDS
GCCGAAAATGAGTAAAGTCG+GGG 0.679717 4_3:-62052804 None:intergenic
ATCACTTCAACATTCAACCT+AGG 0.683951 4_3:-62053207 None:intergenic
GAAGTGATGCAGGAAGAAGG+AGG 0.684299 4_3:+62053222 Msa0653840:CDS
GTCAAAACCAGACAAAAGTG+CGG 0.706806 4_3:-62053103 None:intergenic
AAGAGAAAGAAGGAATCACA+AGG 0.713526 4_3:+62050069 Msa0653840:CDS
ACTTTCCTGAGGTTCAACGA+AGG 0.724440 4_3:-62053348 None:intergenic
ACGCTGAAAGATGGTCAAGG+AGG 0.726925 4_3:+62050217 Msa0653840:CDS
TTGGACACAGTTGAAGACAA+GGG 0.735277 4_3:+62052580 Msa0653840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTTATTTATCTAGAATT+AGG + chr4_3:62051238-62051257 Msa0653840:intron 10.0%
!! ATGATCTATATTATTCAAAT+CGG - chr4_3:62050942-62050961 None:intergenic 15.0%
!! AAGTCACATATATAATTAAT+TGG - chr4_3:62051549-62051568 None:intergenic 15.0%
!!! TTTAAGATAGTTTTAATGAA+AGG + chr4_3:62051568-62051587 Msa0653840:intron 15.0%
!! AACATTTATAAGGATTTAAT+TGG - chr4_3:62051664-62051683 None:intergenic 15.0%
!! GTAACTTCTTATATAATTAA+TGG - chr4_3:62053502-62053521 None:intergenic 15.0%
!!! AATTGTTGATTGTTTAAAAA+AGG + chr4_3:62053567-62053586 Msa0653840:intron 15.0%
!!! ATTGTTGATTGTTTAAAAAA+GGG + chr4_3:62053568-62053587 Msa0653840:intron 15.0%
!! ACAAAATTCTGAATATTTAT+AGG + chr4_3:62053798-62053817 Msa0653840:intron 15.0%
!! CAAAATTCTGAATATTTATA+GGG + chr4_3:62053799-62053818 Msa0653840:intron 15.0%
!!! TATGTGTTTTTTTACTACAA+AGG - chr4_3:62049871-62049890 None:intergenic 20.0%
!! GTACTAAACTAAAAAGTTTA+AGG - chr4_3:62049894-62049913 None:intergenic 20.0%
!! AAAGAAAAGAAACTTCAATT+GGG - chr4_3:62049989-62050008 None:intergenic 20.0%
!!! TTTCTTTTCTTTCTTCAAAA+GGG + chr4_3:62049997-62050016 Msa0653840:five_prime_UTR 20.0%
!!! TTTGAAATTAGGAAAAGAAA+AGG - chr4_3:62050481-62050500 None:intergenic 20.0%
!! CCAAAACTGAAAAATTAAAT+AGG - chr4_3:62050627-62050646 None:intergenic 20.0%
!!! CCTATTTAATTTTTCAGTTT+TGG + chr4_3:62050624-62050643 Msa0653840:intron 20.0%
!!! TAATTTTTCAGTTTTGGATT+TGG + chr4_3:62050630-62050649 Msa0653840:intron 20.0%
!!! TATTTGATTTATGATGTGTA+AGG + chr4_3:62050663-62050682 Msa0653840:intron 20.0%
!!! TTTTTATTTCGGCATAAATA+AGG - chr4_3:62051187-62051206 None:intergenic 20.0%
!!! AGCTTCTGTTTTTTTTATTT+CGG - chr4_3:62051198-62051217 None:intergenic 20.0%
!!! TTTATTTATCTAGAATTAGG+TGG + chr4_3:62051241-62051260 Msa0653840:intron 20.0%
!! AAGTTTCACTAACATTTATA+AGG - chr4_3:62051674-62051693 None:intergenic 20.0%
!! TAATTATAGTGTGATGTATT+AGG + chr4_3:62051713-62051732 Msa0653840:intron 20.0%
!! AATTATAGTGTGATGTATTA+GGG + chr4_3:62051714-62051733 Msa0653840:intron 20.0%
!! CAATTCATTAAAAACTTTGA+AGG + chr4_3:62052130-62052149 Msa0653840:CDS 20.0%
!! CAAAACAGTGAATATTTATA+GGG - chr4_3:62053611-62053630 None:intergenic 20.0%
!! ACAAAACAGTGAATATTTAT+AGG - chr4_3:62053612-62053631 None:intergenic 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG - chr4_3:62053768-62053787 None:intergenic 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG - chr4_3:62053767-62053786 None:intergenic 20.0%
!!! ACATTTTTCTTAAGCATTTT+AGG + chr4_3:62053675-62053694 Msa0653840:intron 20.0%
!!! CATTTTTCTTAAGCATTTTA+GGG + chr4_3:62053676-62053695 Msa0653840:intron 20.0%
!!! ATGCTGATTGAAAATTTTAT+AGG + chr4_3:62053738-62053757 Msa0653840:intron 20.0%
!!! TGCTGATTGAAAATTTTATA+GGG + chr4_3:62053739-62053758 Msa0653840:intron 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG + chr4_3:62053767-62053786 Msa0653840:intron 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG + chr4_3:62053768-62053787 Msa0653840:intron 20.0%
!! ACTAACCCTTAAAAAAATAA+TGG + chr4_3:62053834-62053853 Msa0653840:intron 20.0%
!!! CAAGTCCATTATTTTTTTAA+GGG - chr4_3:62053842-62053861 None:intergenic 20.0%
!!! TCAAGTCCATTATTTTTTTA+AGG - chr4_3:62053843-62053862 None:intergenic 20.0%
!! AGTACAGAAATATACAAAAA+GGG - chr4_3:62054169-62054188 None:intergenic 20.0%
!! AAGTACAGAAATATACAAAA+AGG - chr4_3:62054170-62054189 None:intergenic 20.0%
!! GGAAATTACAAACTTATAAT+AGG - chr4_3:62054628-62054647 None:intergenic 20.0%
!! AAAATCTTGTATTTGATTAC+AGG + chr4_3:62055008-62055027 Msa0653840:three_prime_UTR 20.0%
!! CAAAAAGTTATTTAATTCAC+AGG + chr4_3:62055031-62055050 Msa0653840:three_prime_UTR 20.0%
! AGAAAGGTCAATGAAAAAAT+GGG - chr4_3:62049652-62049671 None:intergenic 25.0%
! ATCTGATAAATAAGAAGATG+AGG - chr4_3:62049746-62049765 None:intergenic 25.0%
!!! TCTTCATGTTTTTTCTTTGT+TGG + chr4_3:62049819-62049838 Msa0653840:five_prime_UTR 25.0%
! GAAAGAAAAGAAACTTCAAT+TGG - chr4_3:62049990-62050009 None:intergenic 25.0%
!! GTTTCTTTTCTTTCTTCAAA+AGG + chr4_3:62049996-62050015 Msa0653840:five_prime_UTR 25.0%
!!! TTTTGTTGTTTTGATGAACA+TGG + chr4_3:62050038-62050057 Msa0653840:exon 25.0%
! AGGTGAAAAAAACAATAACA+TGG + chr4_3:62050089-62050108 Msa0653840:CDS 25.0%
!! TTTTATATTTACTGCTGATG+AGG + chr4_3:62050755-62050774 Msa0653840:intron 25.0%
! ACTATATAACATCATCCAAA+AGG - chr4_3:62050848-62050867 None:intergenic 25.0%
!! CTTTTTCTTTTCTTGGATAA+AGG + chr4_3:62051334-62051353 Msa0653840:intron 25.0%
! GAAAATTATCATTCTTGCAA+AGG - chr4_3:62051377-62051396 None:intergenic 25.0%
! ATTATAGTGTGATGTATTAG+GGG + chr4_3:62051715-62051734 Msa0653840:intron 25.0%
! AGAAAATCTCTACAAAATAG+TGG - chr4_3:62051837-62051856 None:intergenic 25.0%
! ATCATCTTCTGAATATTACT+TGG + chr4_3:62051939-62051958 Msa0653840:intron 25.0%
!!! AGTTTTCGATTGGTTTTTTT+CGG + chr4_3:62052512-62052531 Msa0653840:intron 25.0%
! TATAATTAATGGAGTAGTTG+TGG - chr4_3:62053491-62053510 None:intergenic 25.0%
!! AATCAACAATTTGACTTAGA+AGG - chr4_3:62053558-62053577 None:intergenic 25.0%
!! TGCTGATGGAAAAATTTTAT+TGG + chr4_3:62053707-62053726 Msa0653840:intron 25.0%
!! GCTGATGGAAAAATTTTATT+GGG + chr4_3:62053708-62053727 Msa0653840:intron 25.0%
!!! TTAAGGGTTAGTTAAGTAAA+TGG - chr4_3:62053826-62053845 None:intergenic 25.0%
! AAAAAAAAAGTGATTGTTGC+CGG - chr4_3:62053872-62053891 None:intergenic 25.0%
! GTACAGAAATATACAAAAAG+GGG - chr4_3:62054168-62054187 None:intergenic 25.0%
! ATTATGAAGGCTCAATAATA+TGG + chr4_3:62054720-62054739 Msa0653840:three_prime_UTR 25.0%
!!! AACACTTGCATTATTTTTCT+TGG - chr4_3:62054941-62054960 None:intergenic 25.0%
!! ACAAGATTTTTCATGTCATT+TGG - chr4_3:62054998-62055017 None:intergenic 25.0%
GAGAAAGGTCAATGAAAAAA+TGG - chr4_3:62049653-62049672 None:intergenic 30.0%
!!! GTGTTTTTTTACTACAAAGG+TGG - chr4_3:62049868-62049887 None:intergenic 30.0%
TTTCATTGGTATGCAAAGAA+TGG + chr4_3:62050190-62050209 Msa0653840:CDS 30.0%
AGTGTAACACTTCTTATGTT+TGG - chr4_3:62050300-62050319 None:intergenic 30.0%
!! ATAAGAAGTGTTACACTGAA+AGG + chr4_3:62050303-62050322 Msa0653840:CDS 30.0%
AAGTTGAAATCAGAAAAACG+AGG - chr4_3:62050333-62050352 None:intergenic 30.0%
!! TCGTTTTTCTGATTTCAACT+TGG + chr4_3:62050332-62050351 Msa0653840:CDS 30.0%
! ATCCTTTTCTTGAAGAGTTA+AGG + chr4_3:62050412-62050431 Msa0653840:CDS 30.0%
!! TGATGAAAGTTTGGAGTTTT+TGG + chr4_3:62050455-62050474 Msa0653840:CDS 30.0%
!! AGAGAAAGAGCTTTGAAATT+AGG - chr4_3:62050492-62050511 None:intergenic 30.0%
AATGAGTAACATCATCAACT+TGG - chr4_3:62050803-62050822 None:intergenic 30.0%
!!! AAATTGTTGCTTTTGCCTTT+TGG + chr4_3:62050830-62050849 Msa0653840:intron 30.0%
GCACAGACAATTTATACAAA+GGG - chr4_3:62050916-62050935 None:intergenic 30.0%
AGCACAGACAATTTATACAA+AGG - chr4_3:62050917-62050936 None:intergenic 30.0%
ACAGTCAAGAAAACAGAAAA+AGG - chr4_3:62050979-62050998 None:intergenic 30.0%
ATTTGAGCATCAATTGAGAA+TGG + chr4_3:62051146-62051165 Msa0653840:intron 30.0%
TTTGAGCATCAATTGAGAAT+GGG + chr4_3:62051147-62051166 Msa0653840:intron 30.0%
AAAAGAAAAAGCAGCAAATC+AGG - chr4_3:62051325-62051344 None:intergenic 30.0%
!!! TTTGCTGCTTTTTCTTTTCT+TGG + chr4_3:62051327-62051346 Msa0653840:intron 30.0%
GTAGAGAAAATTTACACTTG+TGG - chr4_3:62051508-62051527 None:intergenic 30.0%
TTAATTGGTATTCAATGCCA+GGG - chr4_3:62051649-62051668 None:intergenic 30.0%
TTTAATTGGTATTCAATGCC+AGG - chr4_3:62051650-62051669 None:intergenic 30.0%
TTATAGTGTGATGTATTAGG+GGG + chr4_3:62051716-62051735 Msa0653840:intron 30.0%
AGCAACAAAATGCATCATAA+TGG - chr4_3:62051897-62051916 None:intergenic 30.0%
AGAAAGAAAATCATACCCAA+AGG - chr4_3:62052457-62052476 None:intergenic 30.0%
!!! TCGATTTTGAAGTTTTCGAT+TGG + chr4_3:62052502-62052521 Msa0653840:intron 30.0%
ACCTGACATTTGAGTATATA+GGG + chr4_3:62052950-62052969 Msa0653840:CDS 30.0%
!! ATAATGGACTTGATTACTAC+CGG + chr4_3:62053850-62053869 Msa0653840:intron 30.0%
TTTACATAACTGAGAAGATG+TGG - chr4_3:62054012-62054031 None:intergenic 30.0%
CATCTTCTCAGTTATGTAAA+TGG + chr4_3:62054012-62054031 Msa0653840:intron 30.0%
TCTCATTAGAATAATGAGTC+AGG + chr4_3:62054208-62054227 Msa0653840:intron 30.0%
AGAAGTTGACGTTAATATAC+TGG - chr4_3:62054339-62054358 None:intergenic 30.0%
AGTATAAGAAAGGAAGAGAA+TGG - chr4_3:62054453-62054472 None:intergenic 30.0%
! GATAACTAACAGTAAGTTGA+GGG - chr4_3:62054493-62054512 None:intergenic 30.0%
TGAGATAAATTCAGTTAGAG+AGG - chr4_3:62054543-62054562 None:intergenic 30.0%
TCAATAATATGGAAGATGGA+AGG + chr4_3:62054731-62054750 Msa0653840:three_prime_UTR 30.0%
ATACATCAATGCAAAGGATA+AGG + chr4_3:62054827-62054846 Msa0653840:three_prime_UTR 30.0%
!! CTTGCATTATTTTTCTTGGT+GGG - chr4_3:62054937-62054956 None:intergenic 30.0%
!! ACTTGCATTATTTTTCTTGG+TGG - chr4_3:62054938-62054957 None:intergenic 30.0%
ATCAAAATGTCTTCAACATG+CGG - chr4_3:62055082-62055101 None:intergenic 30.0%
GTGTTGAAATATGTGTATTC+AGG + chr4_3:62055108-62055127 Msa0653840:three_prime_UTR 30.0%
! GAAAATACACTTTTCCCTTT+TGG + chr4_3:62055130-62055149 Msa0653840:three_prime_UTR 30.0%
GATTTCAACCAATACCAAAA+GGG - chr4_3:62055147-62055166 None:intergenic 30.0%
AGATTTCAACCAATACCAAA+AGG - chr4_3:62055148-62055167 None:intergenic 30.0%
!! TTTGGTATTGGTTGAAATCT+AGG + chr4_3:62055148-62055167 Msa0653840:three_prime_UTR 30.0%
ATGAGAGTGATGATAGAGAA+AGG - chr4_3:62049668-62049687 None:intergenic 35.0%
CTTTGTTGGAAGACAAAACA+TGG + chr4_3:62049833-62049852 Msa0653840:five_prime_UTR 35.0%
AAGAGAAAGAAGGAATCACA+AGG + chr4_3:62050069-62050088 Msa0653840:CDS 35.0%
! AGATTTTCCAGATGAAGTGT+TGG + chr4_3:62050122-62050141 Msa0653840:CDS 35.0%
! TCAAGGAGGAATGTTTTCAT+AGG + chr4_3:62050231-62050250 Msa0653840:CDS 35.0%
TGCTGATATTCATTCATGGT+TGG + chr4_3:62050371-62050390 Msa0653840:CDS 35.0%
AGCCTTAACTCTTCAAGAAA+AGG - chr4_3:62050417-62050436 None:intergenic 35.0%
AGAGTTAAGGCTTAAGAGAA+TGG + chr4_3:62050425-62050444 Msa0653840:CDS 35.0%
!!! CTTTCTCTTTTGAGTTGTGA+TGG + chr4_3:62050504-62050523 Msa0653840:CDS 35.0%
! TTTCTGTTTTCTTGACTGTC+TGG + chr4_3:62050980-62050999 Msa0653840:intron 35.0%
TTCACAAACATCTCACCAAT+GGG - chr4_3:62051046-62051065 None:intergenic 35.0%
ATTCACAAACATCTCACCAA+TGG - chr4_3:62051047-62051066 None:intergenic 35.0%
TTTGTGAATTATGTTGCCAG+TGG + chr4_3:62051058-62051077 Msa0653840:intron 35.0%
! CTCTCAAAATCACAGTTTTG+TGG - chr4_3:62051097-62051116 None:intergenic 35.0%
ATCAATTGAGAATGGGAACA+AGG + chr4_3:62051154-62051173 Msa0653840:intron 35.0%
TGTGTAAAAAATCTTTGCCC+TGG + chr4_3:62051629-62051648 Msa0653840:intron 35.0%
TCTGAATATTACTTGGATGC+AGG + chr4_3:62051946-62051965 Msa0653840:intron 35.0%
CTTAACTGAACTTGACATAC+AGG + chr4_3:62051971-62051990 Msa0653840:CDS 35.0%
TCGATGACAAAAGTGGTAAT+TGG + chr4_3:62052003-62052022 Msa0653840:CDS 35.0%
CCAATGATGTAAAGCTTTCT+GGG - chr4_3:62052040-62052059 None:intergenic 35.0%
TCCAATGATGTAAAGCTTTC+TGG - chr4_3:62052041-62052060 None:intergenic 35.0%
GTTTACATCATTGCTTAGGT+TGG - chr4_3:62052078-62052097 None:intergenic 35.0%
CGAAGTTTACATCATTGCTT+AGG - chr4_3:62052082-62052101 None:intergenic 35.0%
ATCATATTGTCCATTGCTTG+AGG + chr4_3:62052618-62052637 Msa0653840:CDS 35.0%
GACCTGACATTTGAGTATAT+AGG + chr4_3:62052949-62052968 Msa0653840:CDS 35.0%
TCCCTATATACTCAAATGTC+AGG - chr4_3:62052954-62052973 None:intergenic 35.0%
! AGGGAAGTATGCTAAAAACT+TGG + chr4_3:62052969-62052988 Msa0653840:CDS 35.0%
AAACTTGGAAACACTTTCAG+TGG + chr4_3:62052984-62053003 Msa0653840:CDS 35.0%
TTGACAAGTATGAGTCAATG+AGG + chr4_3:62053121-62053140 Msa0653840:CDS 35.0%
GTAGATTGTTAGCACAAGAA+AGG + chr4_3:62053184-62053203 Msa0653840:CDS 35.0%
ATCACTTCAACATTCAACCT+AGG - chr4_3:62053210-62053229 None:intergenic 35.0%
TATGTTTATCGTTCTGTTGC+TGG + chr4_3:62053270-62053289 Msa0653840:CDS 35.0%
TTTCAGAGAGTGAGAACAAA+TGG - chr4_3:62053315-62053334 None:intergenic 35.0%
GATGTCATTCACACTTCATT+AGG - chr4_3:62053457-62053476 None:intergenic 35.0%
TTAGGGACTAAAAATGCTGA+TGG + chr4_3:62053693-62053712 Msa0653840:intron 35.0%
GTCATGCATTAAATGCTACT+TGG + chr4_3:62053951-62053970 Msa0653840:intron 35.0%
AATGGCAAAACACAACTTAC+AGG + chr4_3:62054030-62054049 Msa0653840:intron 35.0%
ATGGCAAAACACAACTTACA+GGG + chr4_3:62054031-62054050 Msa0653840:intron 35.0%
! ATGGTTGCAATTTTGTGAGA+GGG - chr4_3:62054084-62054103 None:intergenic 35.0%
AGAACTATTTGCAGAGAGAA+GGG - chr4_3:62054143-62054162 None:intergenic 35.0%
AAGAACTATTTGCAGAGAGA+AGG - chr4_3:62054144-62054163 None:intergenic 35.0%
AGCAAAAGTCATCACTTGTT+TGG - chr4_3:62054414-62054433 None:intergenic 35.0%
AGGAAGAGAATGGAATTACA+AGG - chr4_3:62054443-62054462 None:intergenic 35.0%
! GAGCTTAAGGAGTATAAGAA+AGG - chr4_3:62054463-62054482 None:intergenic 35.0%
! TAACAGTAAGTTGAGGGATA+CGG - chr4_3:62054487-62054506 None:intergenic 35.0%
GGATAACTAACAGTAAGTTG+AGG - chr4_3:62054494-62054513 None:intergenic 35.0%
ATTATAAAGCGCGACATAAG+TGG - chr4_3:62054649-62054668 None:intergenic 35.0%
AGGCTCAATAATATGGAAGA+TGG + chr4_3:62054727-62054746 Msa0653840:three_prime_UTR 35.0%
ACAATCAATAGCTACGTTTC+AGG - chr4_3:62054796-62054815 None:intergenic 35.0%
! GTGTTGATACATCAATGCAA+AGG + chr4_3:62054821-62054840 Msa0653840:three_prime_UTR 35.0%
ATCAATGCAAAGGATAAGGA+AGG + chr4_3:62054831-62054850 Msa0653840:three_prime_UTR 35.0%
ACAGGATAATGAATGCTAGA+AGG + chr4_3:62055049-62055068 Msa0653840:three_prime_UTR 35.0%
CAGGATAATGAATGCTAGAA+GGG + chr4_3:62055050-62055069 Msa0653840:three_prime_UTR 35.0%
! ACACTTTTCCCTTTTGGTAT+TGG + chr4_3:62055136-62055155 Msa0653840:three_prime_UTR 35.0%
GATGAGGTAGAAGAAGAAGA+AGG - chr4_3:62049730-62049749 None:intergenic 40.0%
!! AAGTGTTGGAACGTGTTCTT+GGG + chr4_3:62050136-62050155 Msa0653840:CDS 40.0%
AGACAGAAGCTCAGTTTCAT+TGG + chr4_3:62050176-62050195 Msa0653840:CDS 40.0%
AATGGTACAACGCTGAAAGA+TGG + chr4_3:62050208-62050227 Msa0653840:CDS 40.0%
AATCTACGTGTCAAGATCTC+AGG - chr4_3:62050276-62050295 None:intergenic 40.0%
TCAACTTGGTTCCTGCAAAT+TGG + chr4_3:62050346-62050365 Msa0653840:CDS 40.0%
CAACTTGGTTCCTGCAAATT+GGG + chr4_3:62050347-62050366 Msa0653840:CDS 40.0%
AACTTGGTTCCTGCAAATTG+GGG + chr4_3:62050348-62050367 Msa0653840:CDS 40.0%
GGCTGTTAGTGATGAAAGTT+TGG + chr4_3:62050446-62050465 Msa0653840:CDS 40.0%
!! TGTGATGGATTTAGCACTGA+TGG + chr4_3:62050519-62050538 Msa0653840:CDS 40.0%
AAAAACAGAAGCTACGACGT+AGG + chr4_3:62051205-62051224 Msa0653840:intron 40.0%
AAAACAGAAGCTACGACGTA+GGG + chr4_3:62051206-62051225 Msa0653840:intron 40.0%
CATCTGAACACAGTACTTGA+AGG - chr4_3:62051744-62051763 None:intergenic 40.0%
GAACTTGACATACAGGAGAA+TGG + chr4_3:62051978-62051997 Msa0653840:CDS 40.0%
CCCAGAAAGCTTTACATCAT+TGG + chr4_3:62052037-62052056 Msa0653840:CDS 40.0%
! GGTTAACAAAAGCGTAACAC+TGG + chr4_3:62052151-62052170 Msa0653840:CDS 40.0%
! TCATTTTCACAAGAGCTGAC+AGG + chr4_3:62052230-62052249 Msa0653840:CDS 40.0%
!! TTCACACCCTTTCTGGTTTA+TGG + chr4_3:62052300-62052319 Msa0653840:CDS 40.0%
!! TCACACCCTTTCTGGTTTAT+GGG + chr4_3:62052301-62052320 Msa0653840:CDS 40.0%
AGCAACCCATAAACCAGAAA+GGG - chr4_3:62052309-62052328 None:intergenic 40.0%
AAGCAACCCATAAACCAGAA+AGG - chr4_3:62052310-62052329 None:intergenic 40.0%
AAGTCAGATTTGTGCATGCA+GGG - chr4_3:62052358-62052377 None:intergenic 40.0%
AAAGTCAGATTTGTGCATGC+AGG - chr4_3:62052359-62052378 None:intergenic 40.0%
AGCGAACAAGAAGCTTAGAA+AGG - chr4_3:62052418-62052437 None:intergenic 40.0%
TCGAATACACTTTCGTTAGC+AGG - chr4_3:62052540-62052559 None:intergenic 40.0%
TTCGAACATCTACCTTATGC+AGG + chr4_3:62052555-62052574 Msa0653840:intron 40.0%
CATCTACCTTATGCAGGTAT+TGG + chr4_3:62052561-62052580 Msa0653840:intron 40.0%
ATTGGACACAGTTGAAGACA+AGG + chr4_3:62052579-62052598 Msa0653840:CDS 40.0%
TTGGACACAGTTGAAGACAA+GGG + chr4_3:62052580-62052599 Msa0653840:CDS 40.0%
! TCATCTGACGGCAAAAGTAT+AGG - chr4_3:62052750-62052769 None:intergenic 40.0%
AGCCGAAAATGAGTAAAGTC+GGG - chr4_3:62052808-62052827 None:intergenic 40.0%
GAGCCGAAAATGAGTAAAGT+CGG - chr4_3:62052809-62052828 None:intergenic 40.0%
! TTTTGCTGGAAGCAGTGATT+GGG + chr4_3:62053008-62053027 Msa0653840:CDS 40.0%
! ATCTCAAGTTTTCGCAGCTT+CGG - chr4_3:62053060-62053079 None:intergenic 40.0%
AGCTGCGAAAACTTGAGATA+AGG + chr4_3:62053061-62053080 Msa0653840:CDS 40.0%
GCTGCGAAAACTTGAGATAA+GGG + chr4_3:62053062-62053081 Msa0653840:CDS 40.0%
GTCAAAACCAGACAAAAGTG+CGG - chr4_3:62053106-62053125 None:intergenic 40.0%
ATGAGTCAATGAGGTCACTT+TGG + chr4_3:62053130-62053149 Msa0653840:CDS 40.0%
! AATGAGGTCACTTTGGATGT+CGG + chr4_3:62053137-62053156 Msa0653840:CDS 40.0%
GTTGAATGTTGAAGTGATGC+AGG + chr4_3:62053212-62053231 Msa0653840:CDS 40.0%
TATTACCAAGGACTTTCCTG+AGG - chr4_3:62053362-62053381 None:intergenic 40.0%
GAGAGAGAGAGATATTACCA+AGG - chr4_3:62053374-62053393 None:intergenic 40.0%
!! AATTGAGAGCGTTACAGTCT+GGG - chr4_3:62054061-62054080 None:intergenic 40.0%
! GATGGTTGCAATTTTGTGAG+AGG - chr4_3:62054085-62054104 None:intergenic 40.0%
TCTGATCAACTCCATTGAGT+AGG + chr4_3:62054247-62054266 Msa0653840:intron 40.0%
TCAACTCCATTGAGTAGGAT+TGG + chr4_3:62054252-62054271 Msa0653840:intron 40.0%
TCAACTTCTCACGCAAAACA+TGG + chr4_3:62054350-62054369 Msa0653840:intron 40.0%
!! ATACTGACTTACCCTCTATC+TGG + chr4_3:62054579-62054598 Msa0653840:intron 40.0%
TAATGAAGCTGCCAGATAGA+GGG - chr4_3:62054593-62054612 None:intergenic 40.0%
CCATATACGGTAGCATTCAA+TGG - chr4_3:62054684-62054703 None:intergenic 40.0%
CCATTGAATGCTACCGTATA+TGG + chr4_3:62054681-62054700 Msa0653840:three_prime_UTR 40.0%
TATGCGCACTTTGCCATATA+CGG - chr4_3:62054697-62054716 None:intergenic 40.0%
! AGTGCGCATACTGATTATGA+AGG + chr4_3:62054707-62054726 Msa0653840:three_prime_UTR 40.0%
ATGGAAGATGGAAGGAAGAA+AGG + chr4_3:62054739-62054758 Msa0653840:three_prime_UTR 40.0%
AATAGCTACGTTTCAGGCAT+TGG - chr4_3:62054790-62054809 None:intergenic 40.0%
GGTAGAGTGCAAGAGAAAGA+AGG + chr4_3:62050059-62050078 Msa0653840:CDS 45.0%
ACACGTTCCAACACTTCATC+TGG - chr4_3:62050132-62050151 None:intergenic 45.0%
!! GAAGTGTTGGAACGTGTTCT+TGG + chr4_3:62050135-62050154 Msa0653840:CDS 45.0%
ACAACGCTGAAAGATGGTCA+AGG + chr4_3:62050214-62050233 Msa0653840:CDS 45.0%
ATATCAGCACCCCAATTTGC+AGG - chr4_3:62050360-62050379 None:intergenic 45.0%
!! GGGGTGCTGATATTCATTCA+TGG + chr4_3:62050367-62050386 Msa0653840:CDS 45.0%
!! TGGATTTAGCACTGATGGCT+TGG + chr4_3:62050524-62050543 Msa0653840:CDS 45.0%
! GCATCGATGCAATTTCCCAT+TGG + chr4_3:62051028-62051047 Msa0653840:intron 45.0%
TGGTCAGATTCTGTTTCCAC+TGG - chr4_3:62051077-62051096 None:intergenic 45.0%
TACCTTAGCAGTCCAGAATG+AGG + chr4_3:62051268-62051287 Msa0653840:intron 45.0%
ATCCTCATTCTGGACTGCTA+AGG - chr4_3:62051273-62051292 None:intergenic 45.0%
GTCCAGAATGAGGATAGAGT+TGG + chr4_3:62051278-62051297 Msa0653840:intron 45.0%
AGCCAACTCTATCCTCATTC+TGG - chr4_3:62051283-62051302 None:intergenic 45.0%
!! AATGGCGTCGATGACAAAAG+TGG + chr4_3:62051996-62052015 Msa0653840:CDS 45.0%
AGAAGTCTTCACACCCTTTC+TGG + chr4_3:62052293-62052312 Msa0653840:CDS 45.0%
TGCATGCAGGGTATAGAACT+TGG - chr4_3:62052346-62052365 None:intergenic 45.0%
TATGCTCCTCTTGACAGTGA+TGG + chr4_3:62052392-62052411 Msa0653840:CDS 45.0%
TCCTAATCTTCGACGCCTTT+GGG + chr4_3:62052439-62052458 Msa0653840:CDS 45.0%
CTGTGTCCAATACCTGCATA+AGG - chr4_3:62052570-62052589 None:intergenic 45.0%
! AGGAGCTACGTGTTTTTCCT+GGG + chr4_3:62052638-62052657 Msa0653840:CDS 45.0%
GGGTTTATTGCTGTCTCTGA+AGG + chr4_3:62052703-62052722 Msa0653840:CDS 45.0%
ATAGGACGTAGTGTAGCTTC+CGG - chr4_3:62052732-62052751 None:intergenic 45.0%
AACAGTAGCAACAGCAGCAT+TGG - chr4_3:62052773-62052792 None:intergenic 45.0%
! GCCCCGACTTTACTCATTTT+CGG + chr4_3:62052803-62052822 Msa0653840:CDS 45.0%
GCCGAAAATGAGTAAAGTCG+GGG - chr4_3:62052807-62052826 None:intergenic 45.0%
GGTCTTAACAACTGCTCCAA+AGG - chr4_3:62052887-62052906 None:intergenic 45.0%
AGACCTGCACTAAACTCCAA+AGG + chr4_3:62052902-62052921 Msa0653840:CDS 45.0%
!! AAGCCTTTGGAGTTTAGTGC+AGG - chr4_3:62052908-62052927 None:intergenic 45.0%
! ACACTTTCAGTGGCTTTTGC+TGG + chr4_3:62052994-62053013 Msa0653840:CDS 45.0%
! CTTTTGCTGGAAGCAGTGAT+TGG + chr4_3:62053007-62053026 Msa0653840:CDS 45.0%
TTGGGCAATGCAATGTGTAC+TGG + chr4_3:62053026-62053045 Msa0653840:CDS 45.0%
! GCAATGCAATGTGTACTGGT+TGG + chr4_3:62053030-62053049 Msa0653840:CDS 45.0%
GAGATAAGGGACAGTCCATT+CGG + chr4_3:62053075-62053094 Msa0653840:CDS 45.0%
GACTGCAAAGTGACGATGAA+TGG + chr4_3:62053159-62053178 Msa0653840:CDS 45.0%
TGTTAGCACAAGAAAGGCCT+AGG + chr4_3:62053190-62053209 Msa0653840:CDS 45.0%
GTTGAAGTGATGCAGGAAGA+AGG + chr4_3:62053219-62053238 Msa0653840:CDS 45.0%
AGAAGGAGGTGATGATAGTC+AGG + chr4_3:62053236-62053255 Msa0653840:CDS 45.0%
TTCTGTTGCTGGACCAAGAA+GGG + chr4_3:62053281-62053300 Msa0653840:CDS 45.0%
CAGAGAGTGAGAACAAATGG+AGG - chr4_3:62053312-62053331 None:intergenic 45.0%
ACTTTCCTGAGGTTCAACGA+AGG - chr4_3:62053351-62053370 None:intergenic 45.0%
TTGAACCTCAGGAAAGTCCT+TGG + chr4_3:62053354-62053373 Msa0653840:three_prime_UTR 45.0%
!! GAATTGAGAGCGTTACAGTC+TGG - chr4_3:62054062-62054081 None:intergenic 45.0%
! GAAATGGTGGTGCACTTGTA+TGG - chr4_3:62054111-62054130 None:intergenic 45.0%
AGAAGGGAGGGAACTTGAAA+TGG - chr4_3:62054127-62054146 None:intergenic 45.0%
CTATTTGCAGAGAGAAGGGA+GGG - chr4_3:62054139-62054158 None:intergenic 45.0%
ACTATTTGCAGAGAGAAGGG+AGG - chr4_3:62054140-62054159 None:intergenic 45.0%
AGTGAGCCAATCCTACTCAA+TGG - chr4_3:62054261-62054280 None:intergenic 45.0%
AGAGGAGCTGAGAATCTAGA+GGG - chr4_3:62054525-62054544 None:intergenic 45.0%
GAGGGTAAGTCAGTATAGCA+TGG - chr4_3:62054575-62054594 None:intergenic 45.0%
GTAATGAAGCTGCCAGATAG+AGG - chr4_3:62054594-62054613 None:intergenic 45.0%
ATGCAAAGGATAAGGAAGGC+CGG + chr4_3:62054835-62054854 Msa0653840:three_prime_UTR 45.0%
TTATTGTGTGTCTCTCTCGC+CGG - chr4_3:62054857-62054876 None:intergenic 45.0%
CTTGCCTTCTTTAGACCACT+TGG + chr4_3:62054910-62054929 Msa0653840:three_prime_UTR 45.0%
!! TTTTTCTTGGTGGGTCCAAG+TGG - chr4_3:62054928-62054947 None:intergenic 45.0%
GTTGGAACGTGTTCTTGGGA+TGG + chr4_3:62050140-62050159 Msa0653840:CDS 50.0%
ACGCTGAAAGATGGTCAAGG+AGG + chr4_3:62050217-62050236 Msa0653840:CDS 50.0%
CGATGCACGACACGTTCAAA+TGG - chr4_3:62051014-62051033 None:intergenic 50.0%
GAAAGGCCATCACTGTCAAG+AGG - chr4_3:62052401-62052420 None:intergenic 50.0%
GTCCTAATCTTCGACGCCTT+TGG + chr4_3:62052438-62052457 Msa0653840:CDS 50.0%
!! ACCCAAAGGCGTCGAAGATT+AGG - chr4_3:62052443-62052462 None:intergenic 50.0%
CACAGTTGAAGACAAGGGAC+TGG + chr4_3:62052585-62052604 Msa0653840:CDS 50.0%
ACACGTAGCTCCTCAAGCAA+TGG - chr4_3:62052631-62052650 None:intergenic 50.0%
! GAGGAGCTACGTGTTTTTCC+TGG + chr4_3:62052637-62052656 Msa0653840:CDS 50.0%
! GGAGCTACGTGTTTTTCCTG+GGG + chr4_3:62052639-62052658 Msa0653840:CDS 50.0%
! TTTTCCTGGGGATCCCTTTG+AGG + chr4_3:62052651-62052670 Msa0653840:CDS 50.0%
CACACGGGGTTACTGAATCA+GGG + chr4_3:62052683-62052702 Msa0653840:CDS 50.0%
! TTGCTGTCTCTGAAGGATGC+CGG + chr4_3:62052710-62052729 Msa0653840:CDS 50.0%
!! CAGCAGCATTGGTCATCTGA+CGG - chr4_3:62052762-62052781 None:intergenic 50.0%
TGCTGCTGTTGCTACTGTTG+TGG + chr4_3:62052774-62052793 Msa0653840:CDS 50.0%
TCTGGTAATCTGGCTGACCA+GGG - chr4_3:62052843-62052862 None:intergenic 50.0%
TGGTCAGCCAGATTACCAGA+CGG + chr4_3:62052843-62052862 Msa0653840:CDS 50.0%
AACCTGACACAGCAAGCCTT+TGG - chr4_3:62052921-62052940 None:intergenic 50.0%
! AAAAGTGCGGCATTGCCGAA+TGG - chr4_3:62053093-62053112 None:intergenic 50.0%
GAAGTGATGCAGGAAGAAGG+AGG + chr4_3:62053222-62053241 Msa0653840:CDS 50.0%
GTTCTGTTGCTGGACCAAGA+AGG + chr4_3:62053280-62053299 Msa0653840:CDS 50.0%
! AATGGAGGTGCATCCCTTCT+TGG - chr4_3:62053297-62053316 None:intergenic 50.0%
GTTCAACGAAGGACTGGAGA+TGG - chr4_3:62053340-62053359 None:intergenic 50.0%
GTGAGTGTGGATGAGAAGCT+GGG - chr4_3:62053990-62054009 None:intergenic 50.0%
CTGAGAAGATGTGGTGAGTG+TGG - chr4_3:62054003-62054022 None:intergenic 50.0%
AGGGAGGGAACTTGAAATGG+TGG - chr4_3:62054124-62054143 None:intergenic 50.0%
TGAGGGATACGGAGAGCTTA+AGG - chr4_3:62054476-62054495 None:intergenic 50.0%
AGAATCTAGAGGGCAAGGCA+AGG - chr4_3:62054515-62054534 None:intergenic 50.0%
AGCTGAGAATCTAGAGGGCA+AGG - chr4_3:62054520-62054539 None:intergenic 50.0%
GAGAGGAGCTGAGAATCTAG+AGG - chr4_3:62054526-62054545 None:intergenic 50.0%
GGGTCCAAGTGGTCTAAAGA+AGG - chr4_3:62054917-62054936 None:intergenic 50.0%
GTCTCTACGATTGCGCACAA+AGG - chr4_3:62055250-62055269 None:intergenic 50.0%
CGCTCGAGAAACTTGTCGCT+AGG + chr4_3:62052105-62052124 Msa0653840:CDS 55.0%
GTACCAAGCTCACAGAGCTG+AGG - chr4_3:62052206-62052225 None:intergenic 55.0%
CAGCTCTGTGAGCTTGGTAC+TGG + chr4_3:62052206-62052225 Msa0653840:CDS 55.0%
GACAAGGGACTGGAAGCTGT+TGG + chr4_3:62052595-62052614 Msa0653840:CDS 55.0%
GCACACGGGGTTACTGAATC+AGG + chr4_3:62052682-62052701 Msa0653840:CDS 55.0%
CTGGTAATCTGGCTGACCAG+GGG - chr4_3:62052842-62052861 None:intergenic 55.0%
GTCTGGTAATCTGGCTGACC+AGG - chr4_3:62052844-62052863 None:intergenic 55.0%
GGTCAGCCAGATTACCAGAC+GGG + chr4_3:62052844-62052863 Msa0653840:CDS 55.0%
TTACCAGACGGGCGAACCTA+TGG + chr4_3:62052855-62052874 Msa0653840:CDS 55.0%
GAACCTATGGACGAGGCCTT+TGG + chr4_3:62052868-62052887 Msa0653840:CDS 55.0%
!! CTCCAAAGGCTTGCTGTGTC+AGG + chr4_3:62052916-62052935 Msa0653840:CDS 55.0%
! GGCAATGCCGCACTTTTGTC+TGG + chr4_3:62053096-62053115 Msa0653840:CDS 55.0%
GGAGGTGATGATAGTCAGGC+TGG + chr4_3:62053240-62053259 Msa0653840:CDS 55.0%
CCTGAGGTTCAACGAAGGAC+TGG - chr4_3:62053346-62053365 None:intergenic 55.0%
CCAGTCCTTCGTTGAACCTC+AGG + chr4_3:62053343-62053362 Msa0653840:three_prime_UTR 55.0%
GGTGAGTGTGGATGAGAAGC+TGG - chr4_3:62053991-62054010 None:intergenic 55.0%
!! TGAGAGCGTTACAGTCTGGG+AGG - chr4_3:62054058-62054077 None:intergenic 55.0%
GGTGCACTTGTATGGCTGGA+TGG - chr4_3:62054103-62054122 None:intergenic 55.0%
! TGGTGGTGCACTTGTATGGC+TGG - chr4_3:62054107-62054126 None:intergenic 55.0%
GCTCACAGAGCTGAGGAGCA+CGG - chr4_3:62052199-62052218 None:intergenic 60.0%
GCTCCTCAGCTCTGTGAGCT+TGG + chr4_3:62052200-62052219 Msa0653840:CDS 60.0%
! TCCTGGGGATCCCTTTGAGG+AGG + chr4_3:62052654-62052673 Msa0653840:CDS 60.0%
! CCTGGGGATCCCTTTGAGGA+GGG + chr4_3:62052655-62052674 Msa0653840:CDS 60.0%
TGTGCAGCGCCCTCCTCAAA+GGG - chr4_3:62052667-62052686 None:intergenic 60.0%
!! TTTGAGGAGGGCGCTGCACA+CGG + chr4_3:62052667-62052686 Msa0653840:CDS 60.0%
GGTTCGCCCGTCTGGTAATC+TGG - chr4_3:62052853-62052872 None:intergenic 60.0%
GCTCCAAAGGCCTCGTCCAT+AGG - chr4_3:62052874-62052893 None:intergenic 60.0%
CCCTCCTCAAAGGGATCCCC+AGG - chr4_3:62052658-62052677 None:intergenic 65.0%
GTGTGCAGCGCCCTCCTCAA+AGG - chr4_3:62052668-62052687 None:intergenic 65.0%
!! TTGAGGAGGGCGCTGCACAC+GGG + chr4_3:62052668-62052687 Msa0653840:CDS 65.0%
CGGCTCTGCATCATGACCCC+TGG + chr4_3:62052823-62052842 Msa0653840:CDS 65.0%
CGTCCATAGGTTCGCCCGTC+TGG - chr4_3:62052861-62052880 None:intergenic 65.0%
GACGGGCGAACCTATGGACG+AGG + chr4_3:62052861-62052880 Msa0653840:CDS 65.0%
!! TGAGGAGGGCGCTGCACACG+GGG + chr4_3:62052669-62052688 Msa0653840:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 62049619 62055285 62049619 ID=Msa0653840;Name=Msa0653840
chr4_3 mRNA 62049619 62055285 62049619 ID=Msa0653840-mRNA-1;Parent=Msa0653840;Name=Msa0653840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=432|1|1|1|0.66|0.5|4|648|588
chr4_3 exon 62049619 62050568 62049619 ID=Msa0653840-mRNA-1:exon:17133;Parent=Msa0653840-mRNA-1
chr4_3 exon 62051968 62052460 62051968 ID=Msa0653840-mRNA-1:exon:17134;Parent=Msa0653840-mRNA-1
chr4_3 exon 62052577 62053375 62052577 ID=Msa0653840-mRNA-1:exon:17135;Parent=Msa0653840-mRNA-1
chr4_3 exon 62054681 62055285 62054681 ID=Msa0653840-mRNA-1:exon:17136;Parent=Msa0653840-mRNA-1
chr4_3 five_prime_UTR 62049619 62050050 62049619 ID=Msa0653840-mRNA-1:five_prime_utr;Parent=Msa0653840-mRNA-1
chr4_3 CDS 62050051 62050568 62050051 ID=Msa0653840-mRNA-1:cds;Parent=Msa0653840-mRNA-1
chr4_3 CDS 62051968 62052460 62051968 ID=Msa0653840-mRNA-1:cds;Parent=Msa0653840-mRNA-1
chr4_3 CDS 62052577 62053332 62052577 ID=Msa0653840-mRNA-1:cds;Parent=Msa0653840-mRNA-1
chr4_3 three_prime_UTR 62053333 62053375 62053333 ID=Msa0653840-mRNA-1:three_prime_utr;Parent=Msa0653840-mRNA-1
chr4_3 three_prime_UTR 62054681 62055285 62054681 ID=Msa0653840-mRNA-1:three_prime_utr;Parent=Msa0653840-mRNA-1
Gene Sequence

>Msa0653840

ATGAACATGGTAGAGTGCAAGAGAAAGAAGGAATCACAAGGTGAAAAAAACAATAACATGGATTCAAGTTCAGATTTTCCAGATGAAGTGTTGGAACGTGTTCTTGGGATGGTGAAATCACGCAAAGACAGAAGCTCAGTTTCATTGGTATGCAAAGAATGGTACAACGCTGAAAGATGGTCAAGGAGGAATGTTTTCATAGGTAACTGTTATGCTGTGTCACCTGAGATCTTGACACGTAGATTTCCAAACATAAGAAGTGTTACACTGAAAGGAAAACCTCGTTTTTCTGATTTCAACTTGGTTCCTGCAAATTGGGGTGCTGATATTCATTCATGGTTGGTTGTTTTTGCTGATAAATATCCTTTTCTTGAAGAGTTAAGGCTTAAGAGAATGGCTGTTAGTGATGAAAGTTTGGAGTTTTTGGCCTTTTCTTTTCCTAATTTCAAAGCTCTTTCTCTTTTGAGTTGTGATGGATTTAGCACTGATGGCTTGGCTGCTGTTGCTACTAATTGCAAGAACTTAACTGAACTTGACATACAGGAGAATGGCGTCGATGACAAAAGTGGTAATTGGTTGAGTTGCTTCCCAGAAAGCTTTACATCATTGGAAATATTGAACTTTGCCAACCTAAGCAATGATGTAAACTTCGACGCGCTCGAGAAACTTGTCGCTAGGTGCAATTCATTAAAAACTTTGAAGGTTAACAAAAGCGTAACACTGGAACAGTTGCAAAGACTTCTTGTCCGTGCTCCTCAGCTCTGTGAGCTTGGTACTGGCTCATTTTCACAAGAGCTGACAGGTCAGCAGTATTCAGAACTTGAACGCGCGTTCAACAATTGTAGAAGTCTTCACACCCTTTCTGGTTTATGGGTTGCTTCAGCACAATATCACCAAGTTCTATACCCTGCATGCACAAATCTGACTTTCTTGAATTTTAGTTATGCTCCTCTTGACAGTGATGGCCTTTCTAAGCTTCTTGTTCGCTGTCCTAATCTTCGACGCCTTTGGGTATTGGACACAGTTGAAGACAAGGGACTGGAAGCTGTTGGATCATATTGTCCATTGCTTGAGGAGCTACGTGTTTTTCCTGGGGATCCCTTTGAGGAGGGCGCTGCACACGGGGTTACTGAATCAGGGTTTATTGCTGTCTCTGAAGGATGCCGGAAGCTACACTACGTCCTATACTTTTGCCGTCAGATGACCAATGCTGCTGTTGCTACTGTTGTGGAAAACTGCCCCGACTTTACTCATTTTCGGCTCTGCATCATGACCCCTGGTCAGCCAGATTACCAGACGGGCGAACCTATGGACGAGGCCTTTGGAGCAGTTGTTAAGACCTGCACTAAACTCCAAAGGCTTGCTGTGTCAGGTTCTCTAACTGACCTGACATTTGAGTATATAGGGAAGTATGCTAAAAACTTGGAAACACTTTCAGTGGCTTTTGCTGGAAGCAGTGATTGGGCAATGCAATGTGTACTGGTTGGCTGTCCGAAGCTGCGAAAACTTGAGATAAGGGACAGTCCATTCGGCAATGCCGCACTTTTGTCTGGTTTTGACAAGTATGAGTCAATGAGGTCACTTTGGATGTCGGACTGCAAAGTGACGATGAATGGATGTAGATTGTTAGCACAAGAAAGGCCTAGGTTGAATGTTGAAGTGATGCAGGAAGAAGGAGGTGATGATAGTCAGGCTGGAAAACTTTATGTTTATCGTTCTGTTGCTGGACCAAGAAGGGATGCACCTCCATTTGTTCTCACTCTCTGA
Protein sequence

>Msa0653840

MNMVECKRKKESQGEKNNNMDSSSDFPDEVLERVLGMVKSRKDRSSVSLVCKEWYNAERWSRRNVFIGNCYAVSPEILTRRFPNIRSVTLKGKPRFSDFNLVPANWGADIHSWLVVFADKYPFLEELRLKRMAVSDESLEFLAFSFPNFKALSLLSCDGFSTDGLAAVATNCKNLTELDIQENGVDDKSGNWLSCFPESFTSLEILNFANLSNDVNFDALEKLVARCNSLKTLKVNKSVTLEQLQRLLVRAPQLCELGTGSFSQELTGQQYSELERAFNNCRSLHTLSGLWVASAQYHQVLYPACTNLTFLNFSYAPLDSDGLSKLLVRCPNLRRLWVLDTVEDKGLEAVGSYCPLLEELRVFPGDPFEEGAAHGVTESGFIAVSEGCRKLHYVLYFCRQMTNAAVATVVENCPDFTHFRLCIMTPGQPDYQTGEPMDEAFGAVVKTCTKLQRLAVSGSLTDLTFEYIGKYAKNLETLSVAFAGSSDWAMQCVLVGCPKLRKLEIRDSPFGNAALLSGFDKYESMRSLWMSDCKVTMNGCRLLAQERPRLNVEVMQEEGGDDSQAGKLYVYRSVAGPRRDAPPFVLTL*