Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0614880 | XP_013446789.2 | 100.000 | 345 | 0 | 0 | 1 | 345 | 1 | 345 | 0.0 | 692 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0614880 | sp|Q9FYE5|UUAT1_ARATH | 78.964 | 309 | 65 | 0 | 37 | 345 | 1 | 309 | 0.0 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0614880 | A0A072TUH1 | 100.000 | 309 | 0 | 0 | 37 | 345 | 1 | 309 | 0.0 | 619 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0614880 | Msa0614930 | 0.917440 | 5.295586e-86 | -8.615850e-47 |
| Msa0614880 | Msa0703680 | 0.919893 | 2.546523e-87 | -8.615850e-47 |
| Msa0567260 | Msa0614880 | 0.956552 | 2.250960e-114 | -8.615850e-47 |
| Msa0573380 | Msa0614880 | 0.803509 | 3.370128e-49 | -8.615850e-47 |
| Msa0574890 | Msa0614880 | 0.801778 | 7.668078e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0614880 | MtrunA17_Chr8g0382081 | 100.000 | 309 | 0 | 0 | 37 | 345 | 1 | 309 | 0.0 | 619 |
| Msa0614880 | MtrunA17_Chr5g0436341 | 73.490 | 298 | 77 | 2 | 47 | 343 | 8 | 304 | 1.40e-160 | 451 |
| Msa0614880 | MtrunA17_Chr3g0112981 | 73.038 | 293 | 79 | 0 | 51 | 343 | 28 | 320 | 1.68e-155 | 439 |
| Msa0614880 | MtrunA17_Chr4g0008071 | 68.966 | 290 | 90 | 0 | 55 | 344 | 20 | 309 | 1.27e-145 | 413 |
| Msa0614880 | MtrunA17_Chr4g0056661 | 59.184 | 294 | 120 | 0 | 50 | 343 | 55 | 348 | 4.26e-118 | 345 |
| Msa0614880 | MtrunA17_Chr3g0103641 | 71.698 | 159 | 45 | 0 | 187 | 345 | 3 | 161 | 9.76e-77 | 233 |
| Msa0614880 | MtrunA17_Chr3g0103631 | 65.806 | 155 | 53 | 0 | 46 | 200 | 8 | 162 | 7.89e-72 | 220 |
| Msa0614880 | MtrunA17_Chr3g0114581 | 32.646 | 291 | 188 | 3 | 55 | 342 | 22 | 307 | 1.78e-48 | 166 |
| Msa0614880 | MtrunA17_Chr1g0160071 | 32.404 | 287 | 192 | 1 | 55 | 341 | 21 | 305 | 3.77e-48 | 165 |
| Msa0614880 | MtrunA17_Chr2g0307091 | 35.473 | 296 | 177 | 7 | 52 | 341 | 18 | 305 | 2.22e-35 | 132 |
| Msa0614880 | MtrunA17_Chr3g0137921 | 31.562 | 320 | 202 | 6 | 27 | 341 | 2 | 309 | 3.95e-33 | 125 |
| Msa0614880 | MtrunA17_Chr7g0270591 | 29.260 | 311 | 210 | 4 | 37 | 343 | 4 | 308 | 2.62e-27 | 110 |
| Msa0614880 | MtrunA17_Chr4g0063601 | 31.081 | 296 | 162 | 9 | 52 | 341 | 18 | 277 | 2.51e-26 | 106 |
| Msa0614880 | MtrunA17_Chr2g0312911 | 25.796 | 314 | 218 | 6 | 37 | 343 | 1 | 306 | 8.64e-23 | 97.4 |
| Msa0614880 | MtrunA17_Chr4g0069261 | 28.322 | 286 | 197 | 3 | 61 | 343 | 24 | 304 | 1.35e-22 | 97.4 |
| Msa0614880 | MtrunA17_Chr6g0449891 | 27.217 | 327 | 224 | 5 | 21 | 342 | 91 | 408 | 4.04e-19 | 87.8 |
| Msa0614880 | MtrunA17_Chr4g0058971 | 26.578 | 301 | 201 | 9 | 51 | 342 | 88 | 377 | 1.66e-17 | 82.8 |
| Msa0614880 | MtrunA17_Chr8g0341861 | 24.172 | 302 | 203 | 7 | 50 | 334 | 171 | 463 | 2.62e-16 | 79.7 |
| Msa0614880 | MtrunA17_Chr2g0298931 | 29.966 | 297 | 177 | 11 | 50 | 337 | 63 | 337 | 8.34e-16 | 77.8 |
| Msa0614880 | MtrunA17_Chr3g0117501 | 24.242 | 330 | 225 | 7 | 22 | 342 | 89 | 402 | 2.57e-13 | 70.5 |
| Msa0614880 | MtrunA17_Chr5g0419001 | 25.649 | 308 | 204 | 11 | 50 | 343 | 106 | 402 | 6.75e-13 | 69.3 |
| Msa0614880 | MtrunA17_Chr3g0129401 | 23.693 | 287 | 211 | 4 | 58 | 343 | 24 | 303 | 1.46e-11 | 64.7 |
| Msa0614880 | MtrunA17_Chr4g0046561 | 25.418 | 299 | 203 | 11 | 55 | 345 | 106 | 392 | 1.95e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0614880 | AT5G04160.1 | 78.964 | 309 | 65 | 0 | 37 | 345 | 1 | 309 | 0.0 | 506 |
| Msa0614880 | AT3G10290.1 | 78.947 | 304 | 64 | 0 | 42 | 345 | 52 | 355 | 0.0 | 505 |
| Msa0614880 | AT3G11320.1 | 74.744 | 293 | 74 | 0 | 51 | 343 | 14 | 306 | 3.81e-158 | 445 |
| Msa0614880 | AT5G05820.1 | 73.038 | 293 | 79 | 0 | 51 | 343 | 14 | 306 | 2.76e-154 | 436 |
| Msa0614880 | AT1G12500.1 | 53.988 | 326 | 150 | 0 | 18 | 343 | 29 | 354 | 1.47e-121 | 354 |
| Msa0614880 | AT1G21870.1 | 33.564 | 289 | 188 | 3 | 55 | 342 | 22 | 307 | 6.82e-48 | 165 |
| Msa0614880 | AT1G77610.1 | 33.219 | 292 | 185 | 5 | 55 | 342 | 16 | 301 | 4.66e-47 | 162 |
| Msa0614880 | AT5G11230.1 | 34.228 | 298 | 182 | 7 | 52 | 343 | 22 | 311 | 1.79e-35 | 132 |
| Msa0614880 | AT5G25400.1 | 32.817 | 323 | 198 | 8 | 27 | 343 | 2 | 311 | 3.74e-34 | 129 |
| Msa0614880 | AT4G32390.1 | 33.127 | 323 | 197 | 8 | 27 | 343 | 2 | 311 | 5.42e-34 | 128 |
| Msa0614880 | AT2G25520.1 | 35.135 | 296 | 178 | 7 | 52 | 341 | 22 | 309 | 5.46e-32 | 123 |
| Msa0614880 | AT1G53660.1 | 29.066 | 289 | 190 | 6 | 61 | 343 | 30 | 309 | 1.44e-26 | 108 |
| Msa0614880 | AT1G53660.3 | 29.066 | 289 | 190 | 6 | 61 | 343 | 48 | 327 | 1.88e-26 | 108 |
| Msa0614880 | AT3G17430.2 | 29.268 | 287 | 193 | 5 | 61 | 343 | 25 | 305 | 1.38e-25 | 106 |
| Msa0614880 | AT3G17430.1 | 29.268 | 287 | 193 | 5 | 61 | 343 | 25 | 305 | 1.38e-25 | 106 |
| Msa0614880 | AT1G53660.4 | 28.832 | 274 | 182 | 5 | 74 | 343 | 11 | 275 | 4.64e-25 | 103 |
| Msa0614880 | AT3G14410.1 | 28.472 | 288 | 196 | 5 | 61 | 343 | 28 | 310 | 1.73e-23 | 99.8 |
| Msa0614880 | AT1G48230.1 | 29.617 | 287 | 192 | 5 | 61 | 343 | 25 | 305 | 4.55e-23 | 99.0 |
| Msa0614880 | AT1G53660.5 | 31.481 | 216 | 136 | 4 | 131 | 343 | 9 | 215 | 6.62e-22 | 93.2 |
| Msa0614880 | AT5G57100.1 | 30.169 | 295 | 177 | 9 | 60 | 343 | 76 | 352 | 8.76e-20 | 89.7 |
| Msa0614880 | AT3G01550.1 | 25.076 | 327 | 230 | 6 | 21 | 342 | 57 | 373 | 4.20e-18 | 85.1 |
| Msa0614880 | AT5G57100.2 | 31.633 | 196 | 121 | 6 | 60 | 250 | 76 | 263 | 1.58e-16 | 79.3 |
| Msa0614880 | AT1G48230.2 | 29.075 | 227 | 153 | 4 | 117 | 341 | 10 | 230 | 1.20e-15 | 76.6 |
| Msa0614880 | AT3G01550.2 | 24.465 | 327 | 227 | 7 | 21 | 342 | 57 | 368 | 6.98e-15 | 75.5 |
| Msa0614880 | AT1G06470.4 | 23.746 | 299 | 208 | 5 | 50 | 334 | 77 | 369 | 1.84e-14 | 74.3 |
| Msa0614880 | AT1G06470.2 | 23.746 | 299 | 208 | 5 | 50 | 334 | 77 | 369 | 1.84e-14 | 74.3 |
| Msa0614880 | AT1G06470.1 | 23.746 | 299 | 208 | 5 | 50 | 334 | 77 | 369 | 1.84e-14 | 74.3 |
| Msa0614880 | AT1G06470.3 | 23.746 | 299 | 208 | 5 | 50 | 334 | 77 | 369 | 1.84e-14 | 74.3 |
| Msa0614880 | AT5G55950.1 | 30.584 | 291 | 169 | 10 | 60 | 337 | 69 | 339 | 6.10e-14 | 72.8 |
| Msa0614880 | AT5G55950.4 | 30.584 | 291 | 169 | 10 | 60 | 337 | 9 | 279 | 9.85e-14 | 71.6 |
| Msa0614880 | AT5G46110.1 | 26.087 | 345 | 229 | 14 | 13 | 345 | 71 | 401 | 9.18e-13 | 69.3 |
| Msa0614880 | AT5G46110.4 | 26.087 | 345 | 229 | 14 | 13 | 345 | 71 | 401 | 9.76e-13 | 69.3 |
| Msa0614880 | AT5G55950.2 | 32.828 | 198 | 116 | 7 | 60 | 250 | 69 | 256 | 1.01e-12 | 68.6 |
| Msa0614880 | AT5G57100.3 | 36.879 | 141 | 78 | 5 | 60 | 195 | 76 | 210 | 1.72e-12 | 67.4 |
| Msa0614880 | AT5G46110.2 | 26.821 | 302 | 197 | 13 | 54 | 345 | 1 | 288 | 1.94e-12 | 67.4 |
| Msa0614880 | AT4G39390.3 | 26.190 | 294 | 195 | 8 | 58 | 343 | 25 | 304 | 9.42e-12 | 65.9 |
| Msa0614880 | AT4G39390.1 | 25.850 | 294 | 196 | 7 | 58 | 343 | 29 | 308 | 1.13e-11 | 65.5 |
| Msa0614880 | AT4G39390.2 | 25.850 | 294 | 196 | 7 | 58 | 343 | 29 | 308 | 1.13e-11 | 65.5 |
| Msa0614880 | AT4G09810.1 | 22.930 | 314 | 223 | 6 | 33 | 343 | 6 | 303 | 4.35e-11 | 63.9 |
Find 62 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAAAGAACATAAATTTA+TGG | 0.161882 | 4_2:+64045533 | Msa0614880:CDS |
| AAGTACCTTATCTCAAATTA+TGG | 0.221981 | 4_2:+64043708 | Msa0614880:CDS |
| ATCAAGGTCACAGTTCTTAA+AGG | 0.247185 | 4_2:+64043836 | Msa0614880:CDS |
| TGGTGATGGCAGGGTGAGCC+TGG | 0.262017 | 4_2:+64044584 | Msa0614880:intron |
| CAATATCTCTCTCAAGTATT+TGG | 0.275503 | 4_2:+64043902 | Msa0614880:CDS |
| AGCTTTCAAATCTGTTCTTC+AGG | 0.288805 | 4_2:+64044655 | Msa0614880:CDS |
| GAGCCTGGGTTTCACTTGTT+TGG | 0.295030 | 4_2:+64044599 | Msa0614880:CDS |
| AATTATGTTAATCAGGTATT+AGG | 0.309168 | 4_2:+64045952 | Msa0614880:intron |
| CAATAAAAGTGACAGGGTTT+TGG | 0.309718 | 4_2:-64046020 | None:intergenic |
| GCTCTTGTTCCTGTTGTTGC+TGG | 0.312689 | 4_2:+64044026 | Msa0614880:CDS |
| CTTAACTCAGCCGCAGCATA+TGG | 0.344628 | 4_2:+64045570 | Msa0614880:CDS |
| GGAAAAGAACATAAATTTAT+GGG | 0.351125 | 4_2:+64045534 | Msa0614880:CDS |
| AGCAAACTTAACAAACTTCT+TGG | 0.373328 | 4_2:+64045593 | Msa0614880:CDS |
| GGCTACTCAGTTACTGTAAT+GGG | 0.394558 | 4_2:+64046051 | Msa0614880:CDS |
| AACATGAATTCTTTGTTGTT+TGG | 0.399155 | 4_2:-64043627 | None:intergenic |
| GGAGGAGGTGGAATCAAATC+AGG | 0.422337 | 4_2:+64043591 | Msa0614880:CDS |
| GCTTTCAAATCTGTTCTTCA+GGG | 0.437125 | 4_2:+64044656 | Msa0614880:CDS |
| TTGCATACGGAGAAACAAAA+AGG | 0.447859 | 4_2:+64046079 | Msa0614880:CDS |
| TGACACATTGTGAGGAAGAT+TGG | 0.449241 | 4_2:-64043741 | None:intergenic |
| TGAAACCATAATTTGAGATA+AGG | 0.466205 | 4_2:-64043713 | None:intergenic |
| GGTGATGGCAGGGTGAGCCT+GGG | 0.473562 | 4_2:+64044585 | Msa0614880:intron |
| TAAGAACTATGTGAACTCAT+TGG | 0.491159 | 4_2:-64043083 | None:intergenic |
| GCCATGCCAATAAAAGTGAC+AGG | 0.492901 | 4_2:-64046027 | None:intergenic |
| ATGGCAACACCAGCAACAAC+AGG | 0.493877 | 4_2:-64044035 | None:intergenic |
| CTCTTGCAGCGGTTGCACTT+AGG | 0.496429 | 4_2:-64044634 | None:intergenic |
| TTGCAAATCCAGGGAGGAGG+TGG | 0.497230 | 4_2:+64043579 | Msa0614880:intron |
| AGCGTGATATCTAAAACATT+CGG | 0.497597 | 4_2:-64045504 | None:intergenic |
| TGGCTACTCAGTTACTGTAA+TGG | 0.499480 | 4_2:+64046050 | Msa0614880:CDS |
| CTGCGATTGGAGACATATAC+AGG | 0.502629 | 4_2:-64045446 | None:intergenic |
| TACAAGTGCTTTGACACTCC+AGG | 0.510037 | 4_2:+64045626 | Msa0614880:CDS |
| TTAGATATCACGCTATCACT+TGG | 0.514237 | 4_2:+64045513 | Msa0614880:CDS |
| GTTTCTTTCAACCAAGCTGT+AGG | 0.516484 | 4_2:+64043927 | Msa0614880:CDS |
| CTCAACAGATGATTAAATCA+AGG | 0.523888 | 4_2:+64043820 | Msa0614880:CDS |
| GGCTCCATGAAAACTACTGC+AGG | 0.527890 | 4_2:-64045483 | None:intergenic |
| TGGAATCAAATCAGGGAAGA+TGG | 0.528633 | 4_2:+64043599 | Msa0614880:CDS |
| CAGGTATTAGGCAATGCAAA+AGG | 0.533740 | 4_2:+64045964 | Msa0614880:intron |
| AAGGGCACGGTTAAAGAAAG+TGG | 0.535006 | 4_2:+64043143 | Msa0614880:CDS |
| CATGAGATCCAAAGGATCCA+TGG | 0.542594 | 4_2:+64043109 | Msa0614880:CDS |
| GCTGGTGTTGCCATTGCAAG+TGG | 0.549715 | 4_2:+64044044 | Msa0614880:CDS |
| CTTGATTTAATCATCTGTTG+AGG | 0.555444 | 4_2:-64043819 | None:intergenic |
| AAAACATACCCCACTTGCAA+TGG | 0.557860 | 4_2:-64044054 | None:intergenic |
| CTGGTGTTGCCATTGCAAGT+GGG | 0.559180 | 4_2:+64044045 | Msa0614880:CDS |
| CTTTGGTACTCATCAAACAT+TGG | 0.563810 | 4_2:+64043669 | Msa0614880:CDS |
| ATCCATGGAAAATGAAAACA+AGG | 0.586176 | 4_2:+64043124 | Msa0614880:CDS |
| TGGTGTTGCCATTGCAAGTG+GGG | 0.597605 | 4_2:+64044046 | Msa0614880:CDS |
| GTAATGGGAGTTATTGCATA+CGG | 0.599804 | 4_2:+64046066 | Msa0614880:CDS |
| AGGGCACGGTTAAAGAAAGT+GGG | 0.600109 | 4_2:+64043144 | Msa0614880:CDS |
| TCTTACAGCATGAGATCCAA+AGG | 0.603872 | 4_2:+64043101 | Msa0614880:CDS |
| AGAGATATTGCCACCAACCA+CGG | 0.608135 | 4_2:-64043889 | None:intergenic |
| ACATTGCAAATCCAGGGAGG+AGG | 0.617057 | 4_2:+64043576 | Msa0614880:intron |
| AATCCAAACAAGTGAAACCC+AGG | 0.628421 | 4_2:-64044602 | None:intergenic |
| GGAAAATGAAAACAAGGGCA+CGG | 0.640574 | 4_2:+64043130 | Msa0614880:CDS |
| CCATGCCAATAAAAGTGACA+GGG | 0.651043 | 4_2:-64046026 | None:intergenic |
| GTGTGGTTGCACCTACAGCT+TGG | 0.651188 | 4_2:-64043938 | None:intergenic |
| AACAATCTTAAAGAACACAA+TGG | 0.654847 | 4_2:-64043796 | None:intergenic |
| GAGGAGGTGGAATCAAATCA+GGG | 0.660705 | 4_2:+64043592 | Msa0614880:CDS |
| TAAGTTTGCTCCATATGCTG+CGG | 0.688898 | 4_2:-64045580 | None:intergenic |
| AGATTTGAAAGCTCTTGCAG+CGG | 0.693952 | 4_2:-64044645 | None:intergenic |
| AACAGCAGTGAAGAAAGGTG+TGG | 0.696609 | 4_2:-64043955 | None:intergenic |
| GGGCACGGTTAAAGAAAGTG+GGG | 0.727668 | 4_2:+64043145 | Msa0614880:CDS |
| CTGTCATGTGACACATTGTG+AGG | 0.735310 | 4_2:-64043749 | None:intergenic |
| TCCATGGAAAATGAAAACAA+GGG | 0.738782 | 4_2:+64043125 | Msa0614880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAATTGCTTATAATAT+AGG | + | chr4_2:64044122-64044141 | Msa0614880:intron | 10.0% |
| !! | AACAAATTAAAATTATCATA+TGG | - | chr4_2:64044526-64044545 | None:intergenic | 10.0% |
| !!! | TGATAATTTTAATTTGTTAT+TGG | + | chr4_2:64044528-64044547 | Msa0614880:intron | 10.0% |
| !! | TAAATAAGGGTAAAAAATAA+AGG | + | chr4_2:64043491-64043510 | Msa0614880:intron | 15.0% |
| !!! | TTTTTTTTTGTTTGATTTGA+TGG | + | chr4_2:64044073-64044092 | Msa0614880:intron | 15.0% |
| !! | TTTATAATCAATTAGCATTT+AGG | + | chr4_2:64044391-64044410 | Msa0614880:intron | 15.0% |
| !!! | ACATTTTTTTAATATGTTGT+TGG | + | chr4_2:64044564-64044583 | Msa0614880:intron | 15.0% |
| !! | TTAAGAATCCAAAAAAATAT+GGG | - | chr4_2:64045320-64045339 | None:intergenic | 15.0% |
| !! | ATTAAGAATCCAAAAAAATA+TGG | - | chr4_2:64045321-64045340 | None:intergenic | 15.0% |
| !!! | TAATTATATTTTTAGCTTTG+AGG | - | chr4_2:64045706-64045725 | None:intergenic | 15.0% |
| !!! | TCGTGATTTTGTTAAAATTA+CGG | - | chr4_2:64043277-64043296 | None:intergenic | 20.0% |
| !! | TTGTTAAAAATTAATGTGAG+AGG | + | chr4_2:64043424-64043443 | Msa0614880:intron | 20.0% |
| !!! | GAAATTATACATAGATGTTT+TGG | + | chr4_2:64044176-64044195 | Msa0614880:intron | 20.0% |
| !!! | TGGTTTTGATTTTGAAATTA+TGG | + | chr4_2:64044196-64044215 | Msa0614880:intron | 20.0% |
| !!! | TTTTGAAATTATGGATGTTT+TGG | + | chr4_2:64044205-64044224 | Msa0614880:intron | 20.0% |
| !!! | GATTTTGGATTTTAATTTTC+TGG | + | chr4_2:64044305-64044324 | Msa0614880:intron | 20.0% |
| !! | TATAAAAATACCAAACAATC+TGG | - | chr4_2:64044377-64044396 | None:intergenic | 20.0% |
| !!! | CTAATTCATGACAATTTTTA+TGG | - | chr4_2:64044469-64044488 | None:intergenic | 20.0% |
| !! | CATAAAAATTGTCATGAATT+AGG | + | chr4_2:64044467-64044486 | Msa0614880:intron | 20.0% |
| !! | ATTAAAATTATCATATGGTG+TGG | - | chr4_2:64044521-64044540 | None:intergenic | 20.0% |
| !! | CTATGATTTCTAAATCATAT+TGG | + | chr4_2:64044721-64044740 | Msa0614880:intron | 20.0% |
| !!! | ATTTTATAGTACTGTTCTAA+AGG | + | chr4_2:64044800-64044819 | Msa0614880:intron | 20.0% |
| !! | CATTCTCACATATAAAAAAT+GGG | - | chr4_2:64044925-64044944 | None:intergenic | 20.0% |
| !! | TCATTCTCACATATAAAAAA+TGG | - | chr4_2:64044926-64044945 | None:intergenic | 20.0% |
| !! | TAAGAATCCAAAAAAATATG+GGG | - | chr4_2:64045319-64045338 | None:intergenic | 20.0% |
| !! | TGGAAAAGAACATAAATTTA+TGG | + | chr4_2:64045533-64045552 | Msa0614880:CDS | 20.0% |
| !! | GGAAAAGAACATAAATTTAT+GGG | + | chr4_2:64045534-64045553 | Msa0614880:CDS | 20.0% |
| !! | ATTATTATTACAACCTTCAA+TGG | + | chr4_2:64045745-64045764 | Msa0614880:intron | 20.0% |
| !! | AATTATGTTAATCAGGTATT+AGG | + | chr4_2:64045952-64045971 | Msa0614880:intron | 20.0% |
| ! | AAGTAATTTCTTCAACACAT+GGG | - | chr4_2:64043208-64043227 | None:intergenic | 25.0% |
| ! | AAAGTAATTTCTTCAACACA+TGG | - | chr4_2:64043209-64043228 | None:intergenic | 25.0% |
| ! | AAGCTTCAATAAAATCACAT+TGG | + | chr4_2:64043340-64043359 | Msa0614880:intron | 25.0% |
| ! | ACAAATCAAGCTCATAAATA+AGG | + | chr4_2:64043477-64043496 | Msa0614880:intron | 25.0% |
| ! | CAAATCAAGCTCATAAATAA+GGG | + | chr4_2:64043478-64043497 | Msa0614880:intron | 25.0% |
| !!! | AACATGAATTCTTTGTTGTT+TGG | - | chr4_2:64043630-64043649 | None:intergenic | 25.0% |
| ! | AAGTACCTTATCTCAAATTA+TGG | + | chr4_2:64043708-64043727 | Msa0614880:CDS | 25.0% |
| !! | TGAAACCATAATTTGAGATA+AGG | - | chr4_2:64043716-64043735 | None:intergenic | 25.0% |
| ! | AACAATCTTAAAGAACACAA+TGG | - | chr4_2:64043799-64043818 | None:intergenic | 25.0% |
| !! | TATAATATAGGTGTGTTGAT+TGG | + | chr4_2:64044134-64044153 | Msa0614880:intron | 25.0% |
| ! | ATTAACTATATTTCCAGATC+TGG | - | chr4_2:64044252-64044271 | None:intergenic | 25.0% |
| !!! | TGTTATTTCATCTATTCATG+TGG | + | chr4_2:64044426-64044445 | Msa0614880:intron | 25.0% |
| !! | TTCATGACAATTTTTATGGT+AGG | - | chr4_2:64044465-64044484 | None:intergenic | 25.0% |
| ! | TAAAAAAATGTACACCATGT+TGG | - | chr4_2:64044555-64044574 | None:intergenic | 25.0% |
| !!! | TTTTAATATGTTGTTGGTGA+TGG | + | chr4_2:64044570-64044589 | Msa0614880:intron | 25.0% |
| ! | TATTTAGTTATTGTGAACTG+TGG | + | chr4_2:64044751-64044770 | Msa0614880:intron | 25.0% |
| ! | TTTATTATTCAGCTCTTTGT+TGG | + | chr4_2:64044828-64044847 | Msa0614880:intron | 25.0% |
| ! | CATATAAAAAATGGGATTCA+AGG | - | chr4_2:64044917-64044936 | None:intergenic | 25.0% |
| ! | TTCAATTGTGTATGAACAAT+GGG | - | chr4_2:64045071-64045090 | None:intergenic | 25.0% |
| ! | TTTCAATTGTGTATGAACAA+TGG | - | chr4_2:64045072-64045091 | None:intergenic | 25.0% |
| !! | CATCAGTGTATTAAAACTTT+TGG | - | chr4_2:64045098-64045117 | None:intergenic | 25.0% |
| ! | TATTTATCGCAAAGTAAAGA+AGG | - | chr4_2:64045235-64045254 | None:intergenic | 25.0% |
| ! | CTTTACTTTGCGATAAATAT+TGG | + | chr4_2:64045236-64045255 | Msa0614880:intron | 25.0% |
| ! | TCTGTCAAATTATGTTAATC+AGG | + | chr4_2:64045945-64045964 | Msa0614880:intron | 25.0% |
| ATCCATGGAAAATGAAAACA+AGG | + | chr4_2:64043124-64043143 | Msa0614880:CDS | 30.0% | |
| TCCATGGAAAATGAAAACAA+GGG | + | chr4_2:64043125-64043144 | Msa0614880:CDS | 30.0% | |
| ATAAACACATTGCAAATCCA+GGG | + | chr4_2:64043570-64043589 | Msa0614880:intron | 30.0% | |
| ! | CATGTTCATATGTTTTCTTG+TGG | + | chr4_2:64043644-64043663 | Msa0614880:CDS | 30.0% |
| CTTGATTTAATCATCTGTTG+AGG | - | chr4_2:64043822-64043841 | None:intergenic | 30.0% | |
| CTCAACAGATGATTAAATCA+AGG | + | chr4_2:64043820-64043839 | Msa0614880:CDS | 30.0% | |
| !!! | ACTTTGAGCTTTGTTTTTTG+TGG | + | chr4_2:64043864-64043883 | Msa0614880:CDS | 30.0% |
| !!! | CTTTGAGCTTTGTTTTTTGT+GGG | + | chr4_2:64043865-64043884 | Msa0614880:CDS | 30.0% |
| CAATATCTCTCTCAAGTATT+TGG | + | chr4_2:64043902-64043921 | Msa0614880:CDS | 30.0% | |
| !!! | TTTAGCTACTTTTAAGAGAG+AGG | + | chr4_2:64043986-64044005 | Msa0614880:CDS | 30.0% |
| !! | TTTTCAAGAACTGTGACATT+TGG | + | chr4_2:64044283-64044302 | Msa0614880:intron | 30.0% |
| !! | AATTTGTTATTGGACCAACA+TGG | + | chr4_2:64044538-64044557 | Msa0614880:intron | 30.0% |
| ! | GCATTTTACTTTCTTCTGAA+GGG | + | chr4_2:64044678-64044697 | Msa0614880:CDS | 30.0% |
| ATGCTTAATAAGCTGTGAAA+GGG | - | chr4_2:64045019-64045038 | None:intergenic | 30.0% | |
| TATGCTTAATAAGCTGTGAA+AGG | - | chr4_2:64045020-64045039 | None:intergenic | 30.0% | |
| TATGGTCAATTTCTATAGCT+TGG | - | chr4_2:64045279-64045298 | None:intergenic | 30.0% | |
| TAGAAATTGACCATAACTTG+AGG | + | chr4_2:64045284-64045303 | Msa0614880:intron | 30.0% | |
| ! | AGCGTGATATCTAAAACATT+CGG | - | chr4_2:64045507-64045526 | None:intergenic | 30.0% |
| AGCAAACTTAACAAACTTCT+TGG | + | chr4_2:64045593-64045612 | Msa0614880:CDS | 30.0% | |
| GAGATAAAAAAAGACAAACC+TGG | - | chr4_2:64045647-64045666 | None:intergenic | 30.0% | |
| !! | GTGCTCATGATTTTTATTTG+TGG | - | chr4_2:64045676-64045695 | None:intergenic | 30.0% |
| ! | TTCATTTTCCATGGATCCTT+TGG | - | chr4_2:64043120-64043139 | None:intergenic | 35.0% |
| CAAAATCACGATGATTCATG+TGG | + | chr4_2:64043286-64043305 | Msa0614880:intron | 35.0% | |
| GATGATTCATGTGGTGATAT+TGG | + | chr4_2:64043295-64043314 | Msa0614880:intron | 35.0% | |
| GATAAACACATTGCAAATCC+AGG | + | chr4_2:64043569-64043588 | Msa0614880:intron | 35.0% | |
| ! | TATGTTTTCTTGTGGCTCTT+TGG | + | chr4_2:64043652-64043671 | Msa0614880:CDS | 35.0% |
| CTTTGGTACTCATCAAACAT+TGG | + | chr4_2:64043669-64043688 | Msa0614880:CDS | 35.0% | |
| ATCAAGGTCACAGTTCTTAA+AGG | + | chr4_2:64043836-64043855 | Msa0614880:CDS | 35.0% | |
| ! | TATATTTCCAGATCTGGAGT+GGG | - | chr4_2:64044246-64044265 | None:intergenic | 35.0% |
| ! | GAACTGTGACATTTGGATTT+TGG | + | chr4_2:64044290-64044309 | Msa0614880:intron | 35.0% |
| AGCTTTCAAATCTGTTCTTC+AGG | + | chr4_2:64044655-64044674 | Msa0614880:CDS | 35.0% | |
| GCTTTCAAATCTGTTCTTCA+GGG | + | chr4_2:64044656-64044675 | Msa0614880:CDS | 35.0% | |
| ! | GGCATTTTACTTTCTTCTGA+AGG | + | chr4_2:64044677-64044696 | Msa0614880:CDS | 35.0% |
| TTAGCCACCAAACATCATTA+AGG | + | chr4_2:64044987-64045006 | Msa0614880:intron | 35.0% | |
| TTCTCCTTAATGATGTTTGG+TGG | - | chr4_2:64044994-64045013 | None:intergenic | 35.0% | |
| GTGTTCTCCTTAATGATGTT+TGG | - | chr4_2:64044997-64045016 | None:intergenic | 35.0% | |
| AAGCAAAAGCAATGTTAAGC+TGG | - | chr4_2:64045204-64045223 | None:intergenic | 35.0% | |
| GAATCCAAAAAAATATGGGG+AGG | - | chr4_2:64045316-64045335 | None:intergenic | 35.0% | |
| TGCATAATCCTCGTTACATA+TGG | + | chr4_2:64045351-64045370 | Msa0614880:intron | 35.0% | |
| TTCATCCATTTCAATCTACC+AGG | + | chr4_2:64045397-64045416 | Msa0614880:intron | 35.0% | |
| TCATCCATTTCAATCTACCA+GGG | + | chr4_2:64045398-64045417 | Msa0614880:intron | 35.0% | |
| AACAAAAATACGACTGCGAT+TGG | - | chr4_2:64045462-64045481 | None:intergenic | 35.0% | |
| TTAGATATCACGCTATCACT+TGG | + | chr4_2:64045513-64045532 | Msa0614880:CDS | 35.0% | |
| AACAAAGCTGAGTTAGCAAT+AGG | - | chr4_2:64045898-64045917 | None:intergenic | 35.0% | |
| ! | CAATAAAAGTGACAGGGTTT+TGG | - | chr4_2:64046023-64046042 | None:intergenic | 35.0% |
| !!! | CAAAACCCTGTCACTTTTAT+TGG | + | chr4_2:64046021-64046040 | Msa0614880:CDS | 35.0% |
| ! | GTAATGGGAGTTATTGCATA+CGG | + | chr4_2:64046066-64046085 | Msa0614880:CDS | 35.0% |
| TTGCATACGGAGAAACAAAA+AGG | + | chr4_2:64046079-64046098 | Msa0614880:CDS | 35.0% | |
| TCTTACAGCATGAGATCCAA+AGG | + | chr4_2:64043101-64043120 | Msa0614880:CDS | 40.0% | |
| !!! | GCCCTTGTTTTCATTTTCCA+TGG | - | chr4_2:64043129-64043148 | None:intergenic | 40.0% |
| GGAAAATGAAAACAAGGGCA+CGG | + | chr4_2:64043130-64043149 | Msa0614880:CDS | 40.0% | |
| !! | GAGCTTGATTTGTCGTAACA+CGG | - | chr4_2:64043470-64043489 | None:intergenic | 40.0% |
| TGGAATCAAATCAGGGAAGA+TGG | + | chr4_2:64043599-64043618 | Msa0614880:CDS | 40.0% | |
| TGACACATTGTGAGGAAGAT+TGG | - | chr4_2:64043744-64043763 | None:intergenic | 40.0% | |
| GTTTCTTTCAACCAAGCTGT+AGG | + | chr4_2:64043927-64043946 | Msa0614880:CDS | 40.0% | |
| GCAAAAACAGCAGTGAAGAA+AGG | - | chr4_2:64043963-64043982 | None:intergenic | 40.0% | |
| !! | CTACTTTTAAGAGAGAGGCT+TGG | + | chr4_2:64043991-64044010 | Msa0614880:CDS | 40.0% |
| AAAACATACCCCACTTGCAA+TGG | - | chr4_2:64044057-64044076 | None:intergenic | 40.0% | |
| CTATATTTCCAGATCTGGAG+TGG | - | chr4_2:64044247-64044266 | None:intergenic | 40.0% | |
| TAGCAGATAGCCAGATTGTT+TGG | + | chr4_2:64044364-64044383 | Msa0614880:intron | 40.0% | |
| !! | AATATGTTGTTGGTGATGGC+AGG | + | chr4_2:64044574-64044593 | Msa0614880:intron | 40.0% |
| !! | ATATGTTGTTGGTGATGGCA+GGG | + | chr4_2:64044575-64044594 | Msa0614880:intron | 40.0% |
| AATCCAAACAAGTGAAACCC+AGG | - | chr4_2:64044605-64044624 | None:intergenic | 40.0% | |
| AGATTTGAAAGCTCTTGCAG+CGG | - | chr4_2:64044648-64044667 | None:intergenic | 40.0% | |
| CCAAAAAAATATGGGGAGGA+AGG | - | chr4_2:64045312-64045331 | None:intergenic | 40.0% | |
| !!! | CCTTCCTCCCCATATTTTTT+TGG | + | chr4_2:64045309-64045328 | Msa0614880:intron | 40.0% |
| GTTCTTTGCCATATGTAACG+AGG | - | chr4_2:64045362-64045381 | None:intergenic | 40.0% | |
| TTCTCCCTGGTAGATTGAAA+TGG | - | chr4_2:64045405-64045424 | None:intergenic | 40.0% | |
| ! | TAAGTTTGCTCCATATGCTG+CGG | - | chr4_2:64045583-64045602 | None:intergenic | 40.0% |
| CACTTTCAGTTTGCCATTGA+AGG | - | chr4_2:64045761-64045780 | None:intergenic | 40.0% | |
| CAGGTATTAGGCAATGCAAA+AGG | + | chr4_2:64045964-64045983 | Msa0614880:intron | 40.0% | |
| CCATGCCAATAAAAGTGACA+GGG | - | chr4_2:64046029-64046048 | None:intergenic | 40.0% | |
| TGGCTACTCAGTTACTGTAA+TGG | + | chr4_2:64046050-64046069 | Msa0614880:CDS | 40.0% | |
| GGCTACTCAGTTACTGTAAT+GGG | + | chr4_2:64046051-64046070 | Msa0614880:CDS | 40.0% | |
| CATACGGAGAAACAAAAAGG+AGG | + | chr4_2:64046082-64046101 | Msa0614880:CDS | 40.0% | |
| CATGAGATCCAAAGGATCCA+TGG | + | chr4_2:64043109-64043128 | Msa0614880:CDS | 45.0% | |
| ! | AAGGGCACGGTTAAAGAAAG+TGG | + | chr4_2:64043143-64043162 | Msa0614880:CDS | 45.0% |
| AGGGCACGGTTAAAGAAAGT+GGG | + | chr4_2:64043144-64043163 | Msa0614880:CDS | 45.0% | |
| TCGTAACACGGTGAGTTTGT+CGG | - | chr4_2:64043458-64043477 | None:intergenic | 45.0% | |
| AACACATTGCAAATCCAGGG+AGG | + | chr4_2:64043573-64043592 | Msa0614880:intron | 45.0% | |
| GAGGAGGTGGAATCAAATCA+GGG | + | chr4_2:64043592-64043611 | Msa0614880:CDS | 45.0% | |
| CTGTCATGTGACACATTGTG+AGG | - | chr4_2:64043752-64043771 | None:intergenic | 45.0% | |
| !!! | CTTTGTTTTTTGTGGGTCCG+TGG | + | chr4_2:64043872-64043891 | Msa0614880:CDS | 45.0% |
| AGAGATATTGCCACCAACCA+CGG | - | chr4_2:64043892-64043911 | None:intergenic | 45.0% | |
| AACAGCAGTGAAGAAAGGTG+TGG | - | chr4_2:64043958-64043977 | None:intergenic | 45.0% | |
| TTTCTGGATCTGCACTCATC+TGG | + | chr4_2:64044321-64044340 | Msa0614880:intron | 45.0% | |
| CATTGAGTTCAACTTCTCCC+TGG | - | chr4_2:64045418-64045437 | None:intergenic | 45.0% | |
| CTGCGATTGGAGACATATAC+AGG | - | chr4_2:64045449-64045468 | None:intergenic | 45.0% | |
| ! | GTTGCCTGCAGTAGTTTTCA+TGG | + | chr4_2:64045479-64045498 | Msa0614880:CDS | 45.0% |
| TACAAGTGCTTTGACACTCC+AGG | + | chr4_2:64045626-64045645 | Msa0614880:CDS | 45.0% | |
| !!! | AAGTGACAGGGTTTTGGAAC+AGG | - | chr4_2:64046017-64046036 | None:intergenic | 45.0% |
| !!! | CCCTGTCACTTTTATTGGCA+TGG | + | chr4_2:64046026-64046045 | Msa0614880:CDS | 45.0% |
| GCCATGCCAATAAAAGTGAC+AGG | - | chr4_2:64046030-64046049 | None:intergenic | 45.0% | |
| !!! | GTCACTTTTATTGGCATGGC+TGG | + | chr4_2:64046030-64046049 | Msa0614880:CDS | 45.0% |
| GGGCACGGTTAAAGAAAGTG+GGG | + | chr4_2:64043145-64043164 | Msa0614880:CDS | 50.0% | |
| ACATTGCAAATCCAGGGAGG+AGG | + | chr4_2:64043576-64043595 | Msa0614880:intron | 50.0% | |
| ATTTGATTCCACCTCCTCCC+TGG | - | chr4_2:64043590-64043609 | None:intergenic | 50.0% | |
| GGAGGAGGTGGAATCAAATC+AGG | + | chr4_2:64043591-64043610 | Msa0614880:CDS | 50.0% | |
| !!! | GTTTTTTGTGGGTCCGTGGT+TGG | + | chr4_2:64043876-64043895 | Msa0614880:CDS | 50.0% |
| GCTCTTGTTCCTGTTGTTGC+TGG | + | chr4_2:64044026-64044045 | Msa0614880:CDS | 50.0% | |
| ATGGCAACACCAGCAACAAC+AGG | - | chr4_2:64044038-64044057 | None:intergenic | 50.0% | |
| !! | CTGGTGTTGCCATTGCAAGT+GGG | + | chr4_2:64044045-64044064 | Msa0614880:CDS | 50.0% |
| !! | TGGTGTTGCCATTGCAAGTG+GGG | + | chr4_2:64044046-64044065 | Msa0614880:CDS | 50.0% |
| ! | CCAGATCTGGAGTGGGATTA+TGG | - | chr4_2:64044239-64044258 | None:intergenic | 50.0% |
| CCATAATCCCACTCCAGATC+TGG | + | chr4_2:64044236-64044255 | Msa0614880:intron | 50.0% | |
| GAGCCTGGGTTTCACTTGTT+TGG | + | chr4_2:64044599-64044618 | Msa0614880:CDS | 50.0% | |
| !! | GAGGAAGGCACCTCAAGTTA+TGG | - | chr4_2:64045297-64045316 | None:intergenic | 50.0% |
| GGCTCCATGAAAACTACTGC+AGG | - | chr4_2:64045486-64045505 | None:intergenic | 50.0% | |
| CTTAACTCAGCCGCAGCATA+TGG | + | chr4_2:64045570-64045589 | Msa0614880:CDS | 50.0% | |
| TTGCAAATCCAGGGAGGAGG+TGG | + | chr4_2:64043579-64043598 | Msa0614880:intron | 55.0% | |
| ! | TTTTGTGGGTCCGTGGTTGG+TGG | + | chr4_2:64043879-64043898 | Msa0614880:CDS | 55.0% |
| GTGTGGTTGCACCTACAGCT+TGG | - | chr4_2:64043941-64043960 | None:intergenic | 55.0% | |
| !! | GCTGGTGTTGCCATTGCAAG+TGG | + | chr4_2:64044044-64044063 | Msa0614880:CDS | 55.0% |
| CTCTTGCAGCGGTTGCACTT+AGG | - | chr4_2:64044637-64044656 | None:intergenic | 55.0% | |
| !! | TGGTGATGGCAGGGTGAGCC+TGG | + | chr4_2:64044584-64044603 | Msa0614880:intron | 65.0% |
| ! | GGTGATGGCAGGGTGAGCCT+GGG | + | chr4_2:64044585-64044604 | Msa0614880:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 64043086 | 64046113 | 64043086 | ID=Msa0614880;Name=Msa0614880 |
| chr4_2 | mRNA | 64043086 | 64046113 | 64043086 | ID=Msa0614880-mRNA-1;Parent=Msa0614880;Name=Msa0614880-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|0.8|1|1|5|0|345 |
| chr4_2 | exon | 64043086 | 64043166 | 64043086 | ID=Msa0614880-mRNA-1:exon:17948;Parent=Msa0614880-mRNA-1 |
| chr4_2 | exon | 64043591 | 64044067 | 64043591 | ID=Msa0614880-mRNA-1:exon:17949;Parent=Msa0614880-mRNA-1 |
| chr4_2 | exon | 64044596 | 64044699 | 64044596 | ID=Msa0614880-mRNA-1:exon:17950;Parent=Msa0614880-mRNA-1 |
| chr4_2 | exon | 64045419 | 64045647 | 64045419 | ID=Msa0614880-mRNA-1:exon:17951;Parent=Msa0614880-mRNA-1 |
| chr4_2 | exon | 64045967 | 64046113 | 64045967 | ID=Msa0614880-mRNA-1:exon:17952;Parent=Msa0614880-mRNA-1 |
| chr4_2 | CDS | 64043086 | 64043166 | 64043086 | ID=Msa0614880-mRNA-1:cds;Parent=Msa0614880-mRNA-1 |
| chr4_2 | CDS | 64043591 | 64044067 | 64043591 | ID=Msa0614880-mRNA-1:cds;Parent=Msa0614880-mRNA-1 |
| chr4_2 | CDS | 64044596 | 64044699 | 64044596 | ID=Msa0614880-mRNA-1:cds;Parent=Msa0614880-mRNA-1 |
| chr4_2 | CDS | 64045419 | 64045647 | 64045419 | ID=Msa0614880-mRNA-1:cds;Parent=Msa0614880-mRNA-1 |
| chr4_2 | CDS | 64045967 | 64046113 | 64045967 | ID=Msa0614880-mRNA-1:cds;Parent=Msa0614880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
