Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0614930 | XP_013446789.2 | 100.000 | 309 | 0 | 0 | 1 | 309 | 37 | 345 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0614930 | sp|Q9FYE5|UUAT1_ARATH | 78.964 | 309 | 65 | 0 | 1 | 309 | 1 | 309 | 0.0 | 505 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004540 | Msa0614930 | 0.801045 | 1.083454e-48 | -8.615850e-47 |
| Msa0016670 | Msa0614930 | 0.808163 | 3.543892e-50 | -8.615850e-47 |
| Msa0057710 | Msa0614930 | 0.810744 | 9.900129e-51 | -8.615850e-47 |
| Msa0073670 | Msa0614930 | 0.806432 | 8.248232e-50 | -8.615850e-47 |
| Msa0094580 | Msa0614930 | 0.801732 | 7.836022e-49 | -8.615850e-47 |
| Msa0614880 | Msa0614930 | 0.917440 | 5.295586e-86 | -8.615850e-47 |
| Msa0614930 | Msa0615420 | 0.811972 | 5.358140e-51 | -8.615850e-47 |
| Msa0614930 | Msa0698640 | 0.801483 | 8.814232e-49 | -8.615850e-47 |
| Msa0614930 | Msa0702340 | 0.849316 | 3.496712e-60 | -8.615850e-47 |
| Msa0614930 | Msa0702590 | 0.847825 | 9.050760e-60 | -8.615850e-47 |
| Msa0614930 | Msa0702660 | 0.853207 | 2.784262e-61 | -8.615850e-47 |
| Msa0614930 | Msa0703680 | 0.970594 | 7.444186e-132 | -8.615850e-47 |
| Msa0614930 | Msa0788770 | 0.826965 | 2.030851e-54 | -8.615850e-47 |
| Msa0614930 | Msa0799000 | 0.821449 | 4.013347e-53 | -8.615850e-47 |
| Msa0614930 | Msa0807820 | 0.803081 | 4.133155e-49 | -8.615850e-47 |
| Msa0614930 | Msa0856050 | 0.801771 | 7.693933e-49 | -8.615850e-47 |
| Msa0614930 | Msa0930780 | 0.816724 | 4.771869e-52 | -8.615850e-47 |
| Msa0614930 | Msa1124110 | 0.810824 | 9.512885e-51 | -8.615850e-47 |
| Msa0614930 | Msa1168950 | 0.812179 | 4.828826e-51 | -8.615850e-47 |
| Msa0614930 | Msa1169040 | 0.808550 | 2.931339e-50 | -8.615850e-47 |
| Msa0614930 | Msa1174530 | 0.822005 | 2.985711e-53 | -8.615850e-47 |
| Msa0614930 | Msa1224840 | 0.851290 | 9.774717e-61 | -8.615850e-47 |
| Msa0614930 | Msa1235250 | 0.828977 | 6.659074e-55 | -8.615850e-47 |
| Msa0614930 | Msa1236100 | 0.805258 | 1.456184e-49 | -8.615850e-47 |
| Msa0614930 | Msa1371520 | 0.829613 | 4.666986e-55 | -8.615850e-47 |
| Msa0614930 | Msa1386710 | 0.814325 | 1.632085e-51 | -8.615850e-47 |
| Msa0614930 | Msa1404170 | 0.803912 | 2.780028e-49 | -8.615850e-47 |
| Msa0614930 | Msa1443930 | 0.822903 | 1.846753e-53 | -8.615850e-47 |
| Msa0138360 | Msa0614930 | 0.832190 | 1.088863e-55 | -8.615850e-47 |
| Msa0147980 | Msa0614930 | 0.829927 | 3.914554e-55 | -8.615850e-47 |
| Msa0233730 | Msa0614930 | 0.807485 | 4.941046e-50 | -8.615850e-47 |
| Msa0364690 | Msa0614930 | 0.806862 | 6.694947e-50 | -8.615850e-47 |
| Msa0479200 | Msa0614930 | 0.818651 | 1.754020e-52 | -8.615850e-47 |
| Msa0277450 | Msa0614930 | 0.808359 | 3.219253e-50 | -8.615850e-47 |
| Msa0527190 | Msa0614930 | 0.826128 | 3.214873e-54 | -8.615850e-47 |
| Msa0567260 | Msa0614930 | 0.937817 | 1.868337e-98 | -8.615850e-47 |
| Msa0574890 | Msa0614930 | 0.815411 | 9.372824e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0614930 | MtrunA17_Chr8g0382081 | 100.000 | 309 | 0 | 0 | 1 | 309 | 1 | 309 | 0.0 | 619 |
| Msa0614930 | MtrunA17_Chr5g0436341 | 73.490 | 298 | 77 | 2 | 11 | 307 | 8 | 304 | 1.95e-160 | 449 |
| Msa0614930 | MtrunA17_Chr3g0112981 | 72.542 | 295 | 81 | 0 | 15 | 309 | 28 | 322 | 2.64e-155 | 437 |
| Msa0614930 | MtrunA17_Chr4g0008071 | 68.966 | 290 | 90 | 0 | 19 | 308 | 20 | 309 | 9.54e-146 | 412 |
| Msa0614930 | MtrunA17_Chr4g0056661 | 58.784 | 296 | 122 | 0 | 14 | 309 | 55 | 350 | 4.14e-118 | 343 |
| Msa0614930 | MtrunA17_Chr3g0103641 | 71.698 | 159 | 45 | 0 | 151 | 309 | 3 | 161 | 2.70e-77 | 233 |
| Msa0614930 | MtrunA17_Chr3g0103631 | 65.806 | 155 | 53 | 0 | 10 | 164 | 8 | 162 | 4.08e-72 | 220 |
| Msa0614930 | MtrunA17_Chr3g0114581 | 32.646 | 291 | 188 | 3 | 19 | 306 | 22 | 307 | 9.38e-49 | 166 |
| Msa0614930 | MtrunA17_Chr1g0160071 | 32.404 | 287 | 192 | 1 | 19 | 305 | 21 | 305 | 2.73e-48 | 164 |
| Msa0614930 | MtrunA17_Chr2g0307091 | 35.473 | 296 | 177 | 7 | 16 | 305 | 18 | 305 | 1.13e-34 | 129 |
| Msa0614930 | MtrunA17_Chr3g0137921 | 32.313 | 294 | 189 | 4 | 16 | 305 | 22 | 309 | 5.77e-31 | 119 |
| Msa0614930 | MtrunA17_Chr7g0270591 | 29.260 | 311 | 210 | 4 | 1 | 307 | 4 | 308 | 3.48e-27 | 109 |
| Msa0614930 | MtrunA17_Chr4g0063601 | 31.081 | 296 | 162 | 9 | 16 | 305 | 18 | 277 | 1.17e-25 | 103 |
| Msa0614930 | MtrunA17_Chr2g0312911 | 25.796 | 314 | 218 | 6 | 1 | 307 | 1 | 306 | 9.22e-23 | 96.7 |
| Msa0614930 | MtrunA17_Chr4g0069261 | 28.322 | 286 | 197 | 3 | 25 | 307 | 24 | 304 | 2.12e-22 | 96.3 |
| Msa0614930 | MtrunA17_Chr6g0449891 | 27.852 | 298 | 206 | 4 | 14 | 306 | 115 | 408 | 1.96e-18 | 85.1 |
| Msa0614930 | MtrunA17_Chr4g0058971 | 26.578 | 301 | 201 | 9 | 15 | 306 | 88 | 377 | 8.24e-18 | 83.2 |
| Msa0614930 | MtrunA17_Chr8g0341861 | 24.172 | 302 | 203 | 7 | 14 | 298 | 171 | 463 | 3.10e-15 | 75.9 |
| Msa0614930 | MtrunA17_Chr2g0298931 | 29.966 | 297 | 177 | 11 | 14 | 301 | 63 | 337 | 4.07e-15 | 75.1 |
| Msa0614930 | MtrunA17_Chr3g0117501 | 26.389 | 216 | 151 | 2 | 96 | 306 | 190 | 402 | 5.64e-13 | 68.9 |
| Msa0614930 | MtrunA17_Chr5g0419001 | 25.658 | 304 | 201 | 11 | 18 | 307 | 110 | 402 | 9.43e-13 | 68.2 |
| Msa0614930 | MtrunA17_Chr3g0129401 | 23.693 | 287 | 211 | 4 | 22 | 307 | 24 | 303 | 3.68e-11 | 63.2 |
| Msa0614930 | MtrunA17_Chr4g0046561 | 25.490 | 306 | 201 | 12 | 19 | 309 | 106 | 399 | 5.02e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0614930 | AT5G04160.1 | 78.964 | 309 | 65 | 0 | 1 | 309 | 1 | 309 | 0.0 | 505 |
| Msa0614930 | AT3G10290.1 | 78.947 | 304 | 64 | 0 | 6 | 309 | 52 | 355 | 0.0 | 504 |
| Msa0614930 | AT3G11320.1 | 74.744 | 293 | 74 | 0 | 15 | 307 | 14 | 306 | 2.66e-158 | 444 |
| Msa0614930 | AT5G05820.1 | 73.038 | 293 | 79 | 0 | 15 | 307 | 14 | 306 | 2.14e-154 | 434 |
| Msa0614930 | AT1G12500.1 | 56.026 | 307 | 135 | 0 | 3 | 309 | 50 | 356 | 4.89e-120 | 349 |
| Msa0614930 | AT1G21870.1 | 33.564 | 289 | 188 | 3 | 19 | 306 | 22 | 307 | 6.13e-48 | 164 |
| Msa0614930 | AT1G77610.1 | 33.219 | 292 | 185 | 5 | 19 | 306 | 16 | 301 | 3.84e-47 | 162 |
| Msa0614930 | AT5G11230.1 | 34.459 | 296 | 180 | 7 | 16 | 305 | 22 | 309 | 9.24e-35 | 129 |
| Msa0614930 | AT5G25400.1 | 34.122 | 296 | 181 | 7 | 16 | 305 | 22 | 309 | 4.39e-33 | 125 |
| Msa0614930 | AT4G32390.1 | 34.797 | 296 | 179 | 7 | 16 | 305 | 22 | 309 | 2.03e-32 | 123 |
| Msa0614930 | AT2G25520.1 | 35.473 | 296 | 177 | 7 | 16 | 305 | 22 | 309 | 1.90e-31 | 120 |
| Msa0614930 | AT1G53660.1 | 29.066 | 289 | 190 | 6 | 25 | 307 | 30 | 309 | 1.87e-26 | 107 |
| Msa0614930 | AT1G53660.3 | 29.066 | 289 | 190 | 6 | 25 | 307 | 48 | 327 | 3.01e-26 | 106 |
| Msa0614930 | AT3G17430.2 | 29.268 | 287 | 193 | 5 | 25 | 307 | 25 | 305 | 6.00e-25 | 103 |
| Msa0614930 | AT3G17430.1 | 29.268 | 287 | 193 | 5 | 25 | 307 | 25 | 305 | 6.00e-25 | 103 |
| Msa0614930 | AT1G53660.4 | 28.832 | 274 | 182 | 5 | 38 | 307 | 11 | 275 | 6.11e-25 | 102 |
| Msa0614930 | AT3G14410.1 | 28.223 | 287 | 198 | 4 | 25 | 307 | 28 | 310 | 1.92e-23 | 99.0 |
| Msa0614930 | AT1G48230.1 | 29.825 | 285 | 190 | 5 | 25 | 305 | 25 | 303 | 1.71e-22 | 96.7 |
| Msa0614930 | AT1G53660.5 | 31.481 | 216 | 136 | 4 | 95 | 307 | 9 | 215 | 9.76e-22 | 92.0 |
| Msa0614930 | AT5G57100.1 | 30.450 | 289 | 172 | 9 | 24 | 301 | 76 | 346 | 1.91e-19 | 88.2 |
| Msa0614930 | AT5G57100.2 | 31.633 | 196 | 121 | 6 | 24 | 214 | 76 | 263 | 3.18e-16 | 77.8 |
| Msa0614930 | AT3G01550.1 | 24.407 | 295 | 213 | 5 | 17 | 306 | 84 | 373 | 1.28e-15 | 77.0 |
| Msa0614930 | AT1G48230.2 | 29.075 | 227 | 153 | 4 | 81 | 305 | 10 | 230 | 5.42e-15 | 74.3 |
| Msa0614930 | AT5G55950.4 | 30.584 | 291 | 169 | 10 | 24 | 301 | 9 | 279 | 1.17e-13 | 70.9 |
| Msa0614930 | AT1G06470.4 | 23.077 | 299 | 210 | 5 | 14 | 298 | 77 | 369 | 1.27e-13 | 71.2 |
| Msa0614930 | AT1G06470.2 | 23.077 | 299 | 210 | 5 | 14 | 298 | 77 | 369 | 1.27e-13 | 71.2 |
| Msa0614930 | AT1G06470.1 | 23.077 | 299 | 210 | 5 | 14 | 298 | 77 | 369 | 1.27e-13 | 71.2 |
| Msa0614930 | AT1G06470.3 | 23.077 | 299 | 210 | 5 | 14 | 298 | 77 | 369 | 1.27e-13 | 71.2 |
| Msa0614930 | AT5G55950.1 | 30.584 | 291 | 169 | 10 | 24 | 301 | 69 | 339 | 1.72e-13 | 70.9 |
| Msa0614930 | AT5G55950.2 | 32.828 | 198 | 116 | 7 | 24 | 214 | 69 | 256 | 1.42e-12 | 67.4 |
| Msa0614930 | AT3G01550.2 | 23.729 | 295 | 210 | 6 | 17 | 306 | 84 | 368 | 2.07e-12 | 67.4 |
| Msa0614930 | AT5G57100.3 | 36.879 | 141 | 78 | 5 | 24 | 159 | 76 | 210 | 2.98e-12 | 66.2 |
| Msa0614930 | AT5G46110.2 | 26.821 | 302 | 197 | 13 | 18 | 309 | 1 | 288 | 3.07e-12 | 66.6 |
| Msa0614930 | AT5G46110.4 | 26.821 | 302 | 197 | 13 | 18 | 309 | 114 | 401 | 1.25e-11 | 65.5 |
| Msa0614930 | AT5G46110.1 | 27.036 | 307 | 193 | 14 | 18 | 307 | 114 | 406 | 1.67e-11 | 65.1 |
| Msa0614930 | AT4G39390.1 | 25.850 | 294 | 196 | 7 | 22 | 307 | 29 | 308 | 1.73e-11 | 64.7 |
| Msa0614930 | AT4G39390.2 | 25.850 | 294 | 196 | 7 | 22 | 307 | 29 | 308 | 1.73e-11 | 64.7 |
| Msa0614930 | AT4G39390.3 | 26.190 | 294 | 195 | 8 | 22 | 307 | 25 | 304 | 1.88e-11 | 64.3 |
Find 47 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAAAGAACATAAATTTA+TGG | 0.161882 | 4_2:-64081919 | Msa0614930:CDS |
| AAGTACCTTATCTCAAATTA+TGG | 0.221981 | 4_2:-64083743 | Msa0614930:CDS |
| ATCAAGGTCACAGTTCTTAA+AGG | 0.247185 | 4_2:-64083615 | Msa0614930:CDS |
| TGGTGATGGCAGGGTGAGCC+TGG | 0.262017 | 4_2:-64082868 | Msa0614930:intron |
| CAATATCTCTCTCAAGTATT+TGG | 0.275503 | 4_2:-64083549 | Msa0614930:CDS |
| AGCTTTCAAATCTGTTCTTC+AGG | 0.288805 | 4_2:-64082797 | Msa0614930:CDS |
| GAGCCTGGGTTTCACTTGTT+TGG | 0.295030 | 4_2:-64082853 | Msa0614930:CDS |
| AATTATGTTAATCAGGTATT+AGG | 0.309168 | 4_2:-64081501 | Msa0614930:intron |
| CAATAAAAGTGACAGGGTTT+TGG | 0.309718 | 4_2:+64081433 | None:intergenic |
| GCTCTTGTTCCTGTTGTTGC+TGG | 0.312689 | 4_2:-64083425 | Msa0614930:CDS |
| CTTAACTCAGCCGCAGCATA+TGG | 0.344628 | 4_2:-64081882 | Msa0614930:CDS |
| GGAAAAGAACATAAATTTAT+GGG | 0.351125 | 4_2:-64081918 | Msa0614930:CDS |
| AGCAAACTTAACAAACTTCT+TGG | 0.373328 | 4_2:-64081859 | Msa0614930:CDS |
| GGCTACTCAGTTACTGTAAT+GGG | 0.394558 | 4_2:-64081402 | Msa0614930:CDS |
| AACATGAATTCTTTGTTGTT+TGG | 0.399155 | 4_2:+64083824 | None:intergenic |
| GCTTTCAAATCTGTTCTTCA+GGG | 0.437125 | 4_2:-64082796 | Msa0614930:CDS |
| TTGCATACGGAGAAACAAAA+AGG | 0.447859 | 4_2:-64081374 | Msa0614930:CDS |
| TGACACATTGTGAGGAAGAT+TGG | 0.449241 | 4_2:+64083710 | None:intergenic |
| TGAAACCATAATTTGAGATA+AGG | 0.466205 | 4_2:+64083738 | None:intergenic |
| GGTGATGGCAGGGTGAGCCT+GGG | 0.473562 | 4_2:-64082867 | Msa0614930:intron |
| GCCATGCCAATAAAAGTGAC+AGG | 0.492901 | 4_2:+64081426 | None:intergenic |
| ATGGCAACACCAGCAACAAC+AGG | 0.493877 | 4_2:+64083416 | None:intergenic |
| CTCTTGCAGCGGTTGCACTT+AGG | 0.496429 | 4_2:+64082818 | None:intergenic |
| AGCGTGATATCTAAAACATT+CGG | 0.497597 | 4_2:+64081948 | None:intergenic |
| TGGCTACTCAGTTACTGTAA+TGG | 0.499480 | 4_2:-64081403 | Msa0614930:CDS |
| CTGCGATTGGAGACATATAC+AGG | 0.502629 | 4_2:+64082006 | None:intergenic |
| TACAAGTGCTTTGACACTCC+AGG | 0.510037 | 4_2:-64081826 | Msa0614930:intron |
| TTAGATATCACGCTATCACT+TGG | 0.514237 | 4_2:-64081939 | Msa0614930:CDS |
| GTTTCTTTCAACCAAGCTGT+AGG | 0.516484 | 4_2:-64083524 | Msa0614930:CDS |
| CTCAACAGATGATTAAATCA+AGG | 0.523888 | 4_2:-64083631 | Msa0614930:CDS |
| GGCTCCATGAAAACTACTGC+AGG | 0.527890 | 4_2:+64081969 | None:intergenic |
| CAGGTATTAGGCAATGCAAA+AGG | 0.533740 | 4_2:-64081489 | Msa0614930:CDS |
| GCTGGTGTTGCCATTGCAAG+TGG | 0.549715 | 4_2:-64083407 | Msa0614930:CDS |
| CTTGATTTAATCATCTGTTG+AGG | 0.555444 | 4_2:+64083632 | None:intergenic |
| AAAACATACCCCACTTGCAA+TGG | 0.557860 | 4_2:+64083397 | None:intergenic |
| CTGGTGTTGCCATTGCAAGT+GGG | 0.559180 | 4_2:-64083406 | Msa0614930:CDS |
| CTTTGGTACTCATCAAACAT+TGG | 0.563810 | 4_2:-64083782 | Msa0614930:CDS |
| TGGTGTTGCCATTGCAAGTG+GGG | 0.597605 | 4_2:-64083405 | Msa0614930:intron |
| GTAATGGGAGTTATTGCATA+CGG | 0.599804 | 4_2:-64081387 | Msa0614930:CDS |
| AATCCAAACAAGTGAAACCC+AGG | 0.628421 | 4_2:+64082850 | None:intergenic |
| CCATGCCAATAAAAGTGACA+GGG | 0.651043 | 4_2:+64081427 | None:intergenic |
| GTGTGGTTGCACCTACAGCT+TGG | 0.651188 | 4_2:+64083513 | None:intergenic |
| AACAATCTTAAAGAACACAA+TGG | 0.654847 | 4_2:+64083655 | None:intergenic |
| TAAGTTTGCTCCATATGCTG+CGG | 0.688898 | 4_2:+64081872 | None:intergenic |
| AGATTTGAAAGCTCTTGCAG+CGG | 0.693952 | 4_2:+64082807 | None:intergenic |
| AACAGCAGTGAAGAAAGGTG+TGG | 0.696609 | 4_2:+64083496 | None:intergenic |
| CTGTCATGTGACACATTGTG+AGG | 0.735310 | 4_2:+64083702 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAATTGCTTATAATAT+AGG | - | chr4_2:64081865-64081884 | Msa0614930:CDS | 10.0% |
| !! | AACAAATTAAAATTATCATA+TGG | + | chr4_2:64082269-64082288 | None:intergenic | 10.0% |
| !!! | TGATAATTTTAATTTGTTAT+TGG | - | chr4_2:64082271-64082290 | Msa0614930:intron | 10.0% |
| !! | TTTATAATCAATTAGCATTT+AGG | - | chr4_2:64082133-64082152 | Msa0614930:intron | 15.0% |
| !!! | ACATTTTTTTAATATGTTGT+TGG | - | chr4_2:64082307-64082326 | Msa0614930:intron | 15.0% |
| !! | TTAAGAATCCAAAAAAATAT+GGG | + | chr4_2:64083063-64083082 | None:intergenic | 15.0% |
| !! | ATTAAGAATCCAAAAAAATA+TGG | + | chr4_2:64083064-64083083 | None:intergenic | 15.0% |
| !!! | TAATTATATTTTTAGCTTTG+AGG | + | chr4_2:64083448-64083467 | None:intergenic | 15.0% |
| !!! | GTTTTTTTTGTTTGATTTGA+TGG | - | chr4_2:64081816-64081835 | Msa0614930:intron | 20.0% |
| !!! | GAAATTATACATAGATGTTT+TGG | - | chr4_2:64081919-64081938 | Msa0614930:CDS | 20.0% |
| !!! | TGGTTTTGATTTTGAAATTA+TGG | - | chr4_2:64081939-64081958 | Msa0614930:CDS | 20.0% |
| !!! | TTTTGAAATTATGGATGTTT+TGG | - | chr4_2:64081948-64081967 | Msa0614930:CDS | 20.0% |
| !!! | GATTTTGGATTTTAATTTTC+TGG | - | chr4_2:64082047-64082066 | Msa0614930:intron | 20.0% |
| !! | TATAAAAATACCAAACAATC+TGG | + | chr4_2:64082119-64082138 | None:intergenic | 20.0% |
| !!! | CTAATTCATGACAATTTTTA+TGG | + | chr4_2:64082212-64082231 | None:intergenic | 20.0% |
| !! | CATAAAAATTGTCATGAATT+AGG | - | chr4_2:64082210-64082229 | Msa0614930:intron | 20.0% |
| !! | ATTAAAATTATCATATGGTG+TGG | + | chr4_2:64082264-64082283 | None:intergenic | 20.0% |
| !! | CTATGATTTCTAAATCATAT+TGG | - | chr4_2:64082464-64082483 | Msa0614930:intron | 20.0% |
| !!! | ATTTTATAGAACTGTTCTAA+AGG | - | chr4_2:64082543-64082562 | Msa0614930:intron | 20.0% |
| !! | CATTCTCACATATAAAAAAT+GGG | + | chr4_2:64082668-64082687 | None:intergenic | 20.0% |
| !! | TCATTCTCACATATAAAAAA+TGG | + | chr4_2:64082669-64082688 | None:intergenic | 20.0% |
| !! | TAAGAATCCAAAAAAATATG+GGG | + | chr4_2:64083062-64083081 | None:intergenic | 20.0% |
| !! | TGGAAAAGAACATAAATTTA+TGG | - | chr4_2:64083276-64083295 | Msa0614930:intron | 20.0% |
| !! | GGAAAAGAACATAAATTTAT+GGG | - | chr4_2:64083277-64083296 | Msa0614930:intron | 20.0% |
| !! | ATTATTATTACAACCTTCAA+TGG | - | chr4_2:64083487-64083506 | Msa0614930:CDS | 20.0% |
| !! | AATTATGTTAATCAGGTATT+AGG | - | chr4_2:64083694-64083713 | Msa0614930:CDS | 20.0% |
| !!! | AACATGAATTCTTTGTTGTT+TGG | + | chr4_2:64081374-64081393 | None:intergenic | 25.0% |
| ! | AAGTACCTTATCTCAAATTA+TGG | - | chr4_2:64081452-64081471 | Msa0614930:CDS | 25.0% |
| !! | TGAAACCATAATTTGAGATA+AGG | + | chr4_2:64081460-64081479 | None:intergenic | 25.0% |
| ! | AACAATCTTAAAGAACACAA+TGG | + | chr4_2:64081543-64081562 | None:intergenic | 25.0% |
| !! | TATAATATAGGTGTGTTGAT+TGG | - | chr4_2:64081877-64081896 | Msa0614930:CDS | 25.0% |
| ! | ATTAACTATATTTCCAGATC+TGG | + | chr4_2:64081995-64082014 | None:intergenic | 25.0% |
| !!! | TTTTTCAAATCTGTGACATT+TGG | - | chr4_2:64082025-64082044 | Msa0614930:CDS | 25.0% |
| !!! | TGTTATTTCATCTATTCATG+TGG | - | chr4_2:64082169-64082188 | Msa0614930:intron | 25.0% |
| !! | TTCATGACAATTTTTATGGT+AGG | + | chr4_2:64082208-64082227 | None:intergenic | 25.0% |
| ! | TAAAAAAATGTACACCATGT+TGG | + | chr4_2:64082298-64082317 | None:intergenic | 25.0% |
| !!! | TTTTAATATGTTGTTGGTGA+TGG | - | chr4_2:64082313-64082332 | Msa0614930:intron | 25.0% |
| ! | TATTTAGTTATTGTGAACTG+TGG | - | chr4_2:64082494-64082513 | Msa0614930:intron | 25.0% |
| ! | TTTATTATTCAGCTCTTTGT+TGG | - | chr4_2:64082571-64082590 | Msa0614930:intron | 25.0% |
| ! | CATATAAAAAATGGGATTCA+AGG | + | chr4_2:64082660-64082679 | None:intergenic | 25.0% |
| ! | TTCAATTGTGTATGAACAAT+GGG | + | chr4_2:64082814-64082833 | None:intergenic | 25.0% |
| ! | TTTCAATTGTGTATGAACAA+TGG | + | chr4_2:64082815-64082834 | None:intergenic | 25.0% |
| !! | CATCAGTGTATTAAAACTTT+TGG | + | chr4_2:64082841-64082860 | None:intergenic | 25.0% |
| ! | TATTTATCGCAAAGTAAAGA+AGG | + | chr4_2:64082978-64082997 | None:intergenic | 25.0% |
| ! | CTTTACTTTGCGATAAATAT+TGG | - | chr4_2:64082979-64082998 | Msa0614930:intron | 25.0% |
| !! | ATGTACATAAAAGTCACTTT+CGG | + | chr4_2:64083517-64083536 | None:intergenic | 25.0% |
| ! | TCTGTCAAATTATGTTAATC+AGG | - | chr4_2:64083687-64083706 | Msa0614930:CDS | 25.0% |
| ! | CATGTTCATATGTTTTCTTG+TGG | - | chr4_2:64081388-64081407 | Msa0614930:CDS | 30.0% |
| CTTGATTTAATCATCTGTTG+AGG | + | chr4_2:64081566-64081585 | None:intergenic | 30.0% | |
| CTCAACAGATGATTAAATCA+AGG | - | chr4_2:64081564-64081583 | Msa0614930:intron | 30.0% | |
| !!! | ACTTTGAGCTTTGTTTTTTG+TGG | - | chr4_2:64081608-64081627 | Msa0614930:intron | 30.0% |
| !!! | CTTTGAGCTTTGTTTTTTGT+GGG | - | chr4_2:64081609-64081628 | Msa0614930:intron | 30.0% |
| CAATATCTCTCTCAAGTATT+TGG | - | chr4_2:64081646-64081665 | Msa0614930:intron | 30.0% | |
| !!! | TTTAGCTACTTTTAAGAGAG+AGG | - | chr4_2:64081730-64081749 | Msa0614930:intron | 30.0% |
| ! | AATCTGTGACATTTGGATTT+TGG | - | chr4_2:64082032-64082051 | Msa0614930:CDS | 30.0% |
| !! | AATTTGTTATTGGACCAACA+TGG | - | chr4_2:64082281-64082300 | Msa0614930:intron | 30.0% |
| ! | GCATTTTACTTTCTTCTGAA+GGG | - | chr4_2:64082421-64082440 | Msa0614930:intron | 30.0% |
| TTAGCCACCAAATATCATTA+AGG | - | chr4_2:64082730-64082749 | Msa0614930:intron | 30.0% | |
| TTCTCCTTAATGATATTTGG+TGG | + | chr4_2:64082737-64082756 | None:intergenic | 30.0% | |
| GTGTTCTCCTTAATGATATT+TGG | + | chr4_2:64082740-64082759 | None:intergenic | 30.0% | |
| ATGCTTAATAAGCTGTGAAA+GGG | + | chr4_2:64082762-64082781 | None:intergenic | 30.0% | |
| TATGCTTAATAAGCTGTGAA+AGG | + | chr4_2:64082763-64082782 | None:intergenic | 30.0% | |
| TATGGTCAATTTCTATAGCT+TGG | + | chr4_2:64083022-64083041 | None:intergenic | 30.0% | |
| TAGAAATTGACCATAACTTG+AGG | - | chr4_2:64083027-64083046 | Msa0614930:intron | 30.0% | |
| ! | AGCGTGATATCTAAAACATT+CGG | + | chr4_2:64083250-64083269 | None:intergenic | 30.0% |
| AGCAAACTTAACAAACTTCT+TGG | - | chr4_2:64083336-64083355 | Msa0614930:intron | 30.0% | |
| AGAGATAAAAAAGACAAACC+TGG | + | chr4_2:64083390-64083409 | None:intergenic | 30.0% | |
| AACAAAACTGAGTTAGCAAT+AGG | + | chr4_2:64083640-64083659 | None:intergenic | 30.0% | |
| ! | TATGTTTTCTTGTGGCTCTT+TGG | - | chr4_2:64081396-64081415 | Msa0614930:CDS | 35.0% |
| CTTTGGTACTCATCAAACAT+TGG | - | chr4_2:64081413-64081432 | Msa0614930:CDS | 35.0% | |
| ATCAAGGTCACAGTTCTTAA+AGG | - | chr4_2:64081580-64081599 | Msa0614930:intron | 35.0% | |
| ! | TATATTTCCAGATCTGGAGT+GGG | + | chr4_2:64081989-64082008 | None:intergenic | 35.0% |
| AGCTTTCAAATCTGTTCTTC+AGG | - | chr4_2:64082398-64082417 | Msa0614930:intron | 35.0% | |
| GCTTTCAAATCTGTTCTTCA+GGG | - | chr4_2:64082399-64082418 | Msa0614930:intron | 35.0% | |
| ! | GGCATTTTACTTTCTTCTGA+AGG | - | chr4_2:64082420-64082439 | Msa0614930:intron | 35.0% |
| AAGCAAAAGCAATGTTAAGC+TGG | + | chr4_2:64082947-64082966 | None:intergenic | 35.0% | |
| GAATCCAAAAAAATATGGGG+AGG | + | chr4_2:64083059-64083078 | None:intergenic | 35.0% | |
| TGCATAATCCTCGTTACATA+TGG | - | chr4_2:64083094-64083113 | Msa0614930:intron | 35.0% | |
| AACAAAAATACGACTGCGAT+TGG | + | chr4_2:64083205-64083224 | None:intergenic | 35.0% | |
| TTAGATATCACGCTATCACT+TGG | - | chr4_2:64083256-64083275 | Msa0614930:intron | 35.0% | |
| !!! | GTGCTCATGATTTTTAGTTG+TGG | + | chr4_2:64083418-64083437 | None:intergenic | 35.0% |
| ! | CAATAAAAGTGACAGGGTTT+TGG | + | chr4_2:64083765-64083784 | None:intergenic | 35.0% |
| !!! | CAAAACCCTGTCACTTTTAT+TGG | - | chr4_2:64083763-64083782 | Msa0614930:CDS | 35.0% |
| ! | GTAATGGGAGTTATTGCATA+CGG | - | chr4_2:64083808-64083827 | Msa0614930:CDS | 35.0% |
| TTGCATACGGAGAAACAAAA+AGG | - | chr4_2:64083821-64083840 | Msa0614930:CDS | 35.0% | |
| TGACACATTGTGAGGAAGAT+TGG | + | chr4_2:64081488-64081507 | None:intergenic | 40.0% | |
| !!! | CTTTGTTTTTTGTGGGTCTG+TGG | - | chr4_2:64081616-64081635 | Msa0614930:intron | 40.0% |
| GTTTCTTTCAACCAAGCTGT+AGG | - | chr4_2:64081671-64081690 | Msa0614930:intron | 40.0% | |
| GCAAAAACAGCAGTGAAGAA+AGG | + | chr4_2:64081707-64081726 | None:intergenic | 40.0% | |
| !! | CTACTTTTAAGAGAGAGGCT+TGG | - | chr4_2:64081735-64081754 | Msa0614930:intron | 40.0% |
| AAAACATACCCCACTTGCAA+TGG | + | chr4_2:64081801-64081820 | None:intergenic | 40.0% | |
| CTATATTTCCAGATCTGGAG+TGG | + | chr4_2:64081990-64082009 | None:intergenic | 40.0% | |
| TAGCAGATAGCCAGATTGTT+TGG | - | chr4_2:64082106-64082125 | Msa0614930:intron | 40.0% | |
| !! | AATATGTTGTTGGTGATGGC+AGG | - | chr4_2:64082317-64082336 | Msa0614930:intron | 40.0% |
| !! | ATATGTTGTTGGTGATGGCA+GGG | - | chr4_2:64082318-64082337 | Msa0614930:intron | 40.0% |
| AATCCAAACAAGTGAAACCC+AGG | + | chr4_2:64082348-64082367 | None:intergenic | 40.0% | |
| AGATTTGAAAGCTCTTGCAG+CGG | + | chr4_2:64082391-64082410 | None:intergenic | 40.0% | |
| CCAAAAAAATATGGGGAGGA+AGG | + | chr4_2:64083055-64083074 | None:intergenic | 40.0% | |
| !!! | CCTTCCTCCCCATATTTTTT+TGG | - | chr4_2:64083052-64083071 | Msa0614930:intron | 40.0% |
| GTTCTTTGCCATATGTAACG+AGG | + | chr4_2:64083105-64083124 | None:intergenic | 40.0% | |
| TTCATCCATTTCAACCTACC+AGG | - | chr4_2:64083140-64083159 | Msa0614930:intron | 40.0% | |
| TCATCCATTTCAACCTACCA+GGG | - | chr4_2:64083141-64083160 | Msa0614930:intron | 40.0% | |
| ! | TAAGTTTGCTCCATATGCTG+CGG | + | chr4_2:64083326-64083345 | None:intergenic | 40.0% |
| CAGGTATTAGGCAATGCAAA+AGG | - | chr4_2:64083706-64083725 | Msa0614930:CDS | 40.0% | |
| CCATGCCAATAAAAGTGACA+GGG | + | chr4_2:64083771-64083790 | None:intergenic | 40.0% | |
| TGGCTACTCAGTTACTGTAA+TGG | - | chr4_2:64083792-64083811 | Msa0614930:CDS | 40.0% | |
| GGCTACTCAGTTACTGTAAT+GGG | - | chr4_2:64083793-64083812 | Msa0614930:CDS | 40.0% | |
| CATACGGAGAAACAAAAAGG+AGG | - | chr4_2:64083824-64083843 | Msa0614930:CDS | 40.0% | |
| CTGTCATGTGACACATTGTG+AGG | + | chr4_2:64081496-64081515 | None:intergenic | 45.0% | |
| !!! | GTTTTTTGTGGGTCTGTGGT+TGG | - | chr4_2:64081620-64081639 | Msa0614930:intron | 45.0% |
| AACAGCAGTGAAGAAAGGTG+TGG | + | chr4_2:64081702-64081721 | None:intergenic | 45.0% | |
| TTTCTGGATCTGCACTCATC+TGG | - | chr4_2:64082063-64082082 | Msa0614930:intron | 45.0% | |
| ! | TTCTCCCTGGTAGGTTGAAA+TGG | + | chr4_2:64083148-64083167 | None:intergenic | 45.0% |
| CATTGAGTTCAACTTCTCCC+TGG | + | chr4_2:64083161-64083180 | None:intergenic | 45.0% | |
| CTGCGATTGGAGACATATAC+AGG | + | chr4_2:64083192-64083211 | None:intergenic | 45.0% | |
| ! | GTTGCCTGCAGTAGTTTTCA+TGG | - | chr4_2:64083222-64083241 | Msa0614930:intron | 45.0% |
| TACAAGTGCTTTGACACTCC+AGG | - | chr4_2:64083369-64083388 | Msa0614930:intron | 45.0% | |
| ! | CACTTTCGGTTTGCCATTGA+AGG | + | chr4_2:64083503-64083522 | None:intergenic | 45.0% |
| !!! | AAGTGACAGGGTTTTGGAAC+AGG | + | chr4_2:64083759-64083778 | None:intergenic | 45.0% |
| !!! | CCCTGTCACTTTTATTGGCA+TGG | - | chr4_2:64083768-64083787 | Msa0614930:CDS | 45.0% |
| GCCATGCCAATAAAAGTGAC+AGG | + | chr4_2:64083772-64083791 | None:intergenic | 45.0% | |
| !!! | GTCACTTTTATTGGCATGGC+TGG | - | chr4_2:64083772-64083791 | Msa0614930:CDS | 45.0% |
| ! | TTTTGTGGGTCTGTGGTTGG+TGG | - | chr4_2:64081623-64081642 | Msa0614930:intron | 50.0% |
| GCTCTTGTTCCTGTTGTTGC+TGG | - | chr4_2:64081770-64081789 | Msa0614930:intron | 50.0% | |
| ATGGCAACACCAGCAACAAC+AGG | + | chr4_2:64081782-64081801 | None:intergenic | 50.0% | |
| !! | CTGGTGTTGCCATTGCAAGT+GGG | - | chr4_2:64081789-64081808 | Msa0614930:intron | 50.0% |
| !! | TGGTGTTGCCATTGCAAGTG+GGG | - | chr4_2:64081790-64081809 | Msa0614930:intron | 50.0% |
| ! | CCAGATCTGGAGTGGGATTA+TGG | + | chr4_2:64081982-64082001 | None:intergenic | 50.0% |
| CCATAATCCCACTCCAGATC+TGG | - | chr4_2:64081979-64081998 | Msa0614930:CDS | 50.0% | |
| GAGCCTGGGTTTCACTTGTT+TGG | - | chr4_2:64082342-64082361 | Msa0614930:intron | 50.0% | |
| !! | GAGGAAGGCACCTCAAGTTA+TGG | + | chr4_2:64083040-64083059 | None:intergenic | 50.0% |
| GAGTTCAACTTCTCCCTGGT+AGG | + | chr4_2:64083157-64083176 | None:intergenic | 50.0% | |
| GGCTCCATGAAAACTACTGC+AGG | + | chr4_2:64083229-64083248 | None:intergenic | 50.0% | |
| CTTAACTCAGCCGCAGCATA+TGG | - | chr4_2:64083313-64083332 | Msa0614930:intron | 50.0% | |
| GTGTGGTTGCACCTACAGCT+TGG | + | chr4_2:64081685-64081704 | None:intergenic | 55.0% | |
| !! | GCTGGTGTTGCCATTGCAAG+TGG | - | chr4_2:64081788-64081807 | Msa0614930:intron | 55.0% |
| CTCTTGCAGCGGTTGCACTT+AGG | + | chr4_2:64082380-64082399 | None:intergenic | 55.0% | |
| !! | TGGTGATGGCAGGGTGAGCC+TGG | - | chr4_2:64082327-64082346 | Msa0614930:intron | 65.0% |
| ! | GGTGATGGCAGGGTGAGCCT+GGG | - | chr4_2:64082328-64082347 | Msa0614930:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 64081362 | 64083855 | 64081362 | ID=Msa0614930;Name=Msa0614930 |
| chr4_2 | mRNA | 64081362 | 64083855 | 64081362 | ID=Msa0614930-mRNA-1;Parent=Msa0614930;Name=Msa0614930-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|0.75|4|0|309 |
| chr4_2 | exon | 64083406 | 64083855 | 64083406 | ID=Msa0614930-mRNA-1:exon:17965;Parent=Msa0614930-mRNA-1 |
| chr4_2 | exon | 64082775 | 64082878 | 64082775 | ID=Msa0614930-mRNA-1:exon:17964;Parent=Msa0614930-mRNA-1 |
| chr4_2 | exon | 64081827 | 64082055 | 64081827 | ID=Msa0614930-mRNA-1:exon:17963;Parent=Msa0614930-mRNA-1 |
| chr4_2 | exon | 64081362 | 64081508 | 64081362 | ID=Msa0614930-mRNA-1:exon:17962;Parent=Msa0614930-mRNA-1 |
| chr4_2 | CDS | 64083406 | 64083855 | 64083406 | ID=Msa0614930-mRNA-1:cds;Parent=Msa0614930-mRNA-1 |
| chr4_2 | CDS | 64082775 | 64082878 | 64082775 | ID=Msa0614930-mRNA-1:cds;Parent=Msa0614930-mRNA-1 |
| chr4_2 | CDS | 64081827 | 64082055 | 64081827 | ID=Msa0614930-mRNA-1:cds;Parent=Msa0614930-mRNA-1 |
| chr4_2 | CDS | 64081362 | 64081508 | 64081362 | ID=Msa0614930-mRNA-1:cds;Parent=Msa0614930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
