Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567260 | XP_013446789.2 | 100.000 | 309 | 0 | 0 | 1 | 309 | 37 | 345 | 0.0 | 619 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567260 | sp|Q9FYE5|UUAT1_ARATH | 78.964 | 309 | 65 | 0 | 1 | 309 | 1 | 309 | 0.0 | 505 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567260 | A0A072TUH1 | 100.000 | 309 | 0 | 0 | 1 | 309 | 1 | 309 | 0.0 | 619 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0138360 | Msa0567260 | 0.827525 | 1.491280e-54 | -8.615850e-47 |
| Msa0144360 | Msa0567260 | 0.813082 | 3.063554e-51 | -8.615850e-47 |
| Msa0147980 | Msa0567260 | 0.813498 | 2.482846e-51 | -8.615850e-47 |
| Msa0364690 | Msa0567260 | 0.808853 | 2.524937e-50 | -8.615850e-47 |
| Msa0422850 | Msa0567260 | 0.808158 | 3.553363e-50 | -8.615850e-47 |
| Msa0422930 | Msa0567260 | 0.806183 | 9.308376e-50 | -8.615850e-47 |
| Msa0479200 | Msa0567260 | 0.804270 | 2.341386e-49 | -8.615850e-47 |
| Msa0527190 | Msa0567260 | 0.819700 | 1.012193e-52 | -8.615850e-47 |
| Msa0567260 | Msa0573380 | 0.834713 | 2.556112e-56 | -8.615850e-47 |
| Msa0567260 | Msa0574890 | 0.834301 | 3.243241e-56 | -8.615850e-47 |
| Msa0567260 | Msa0614880 | 0.956552 | 2.250960e-114 | -8.615850e-47 |
| Msa0567260 | Msa0614930 | 0.937817 | 1.868337e-98 | -8.615850e-47 |
| Msa0567260 | Msa0615420 | 0.804203 | 2.417522e-49 | -8.615850e-47 |
| Msa0567260 | Msa0702340 | 0.815501 | 8.952457e-52 | -8.615850e-47 |
| Msa0567260 | Msa0702590 | 0.818260 | 2.150651e-52 | -8.615850e-47 |
| Msa0567260 | Msa0702660 | 0.820333 | 7.249339e-53 | -8.615850e-47 |
| Msa0567260 | Msa0703680 | 0.946930 | 1.795917e-105 | -8.615850e-47 |
| Msa0567260 | Msa0788770 | 0.817418 | 3.331615e-52 | -8.615850e-47 |
| Msa0567260 | Msa0789650 | 0.800171 | 1.633502e-48 | -8.615850e-47 |
| Msa0567260 | Msa0799000 | 0.813203 | 2.882015e-51 | -8.615850e-47 |
| Msa0567260 | Msa0856050 | 0.811216 | 7.821281e-51 | -8.615850e-47 |
| Msa0567260 | Msa0930780 | 0.821770 | 3.383250e-53 | -8.615850e-47 |
| Msa0567260 | Msa1168950 | 0.800837 | 1.194882e-48 | -8.615850e-47 |
| Msa0567260 | Msa1224840 | 0.821395 | 4.131048e-53 | -8.615850e-47 |
| Msa0567260 | Msa1235250 | 0.805726 | 1.161479e-49 | -8.615850e-47 |
| Msa0567260 | Msa1277490 | 0.804529 | 2.067684e-49 | -8.615850e-47 |
| Msa0567260 | Msa1371520 | 0.829535 | 4.876143e-55 | -8.615850e-47 |
| Msa0567260 | Msa1443930 | 0.801524 | 8.644053e-49 | -8.615850e-47 |
| Msa0567260 | Msa1459460 | 0.806464 | 8.122451e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567260 | MtrunA17_Chr8g0382081 | 100.000 | 309 | 0 | 0 | 1 | 309 | 1 | 309 | 0.0 | 619 |
| Msa0567260 | MtrunA17_Chr5g0436341 | 73.490 | 298 | 77 | 2 | 11 | 307 | 8 | 304 | 1.95e-160 | 449 |
| Msa0567260 | MtrunA17_Chr3g0112981 | 72.542 | 295 | 81 | 0 | 15 | 309 | 28 | 322 | 2.64e-155 | 437 |
| Msa0567260 | MtrunA17_Chr4g0008071 | 68.966 | 290 | 90 | 0 | 19 | 308 | 20 | 309 | 9.54e-146 | 412 |
| Msa0567260 | MtrunA17_Chr4g0056661 | 58.784 | 296 | 122 | 0 | 14 | 309 | 55 | 350 | 4.14e-118 | 343 |
| Msa0567260 | MtrunA17_Chr3g0103641 | 71.698 | 159 | 45 | 0 | 151 | 309 | 3 | 161 | 2.70e-77 | 233 |
| Msa0567260 | MtrunA17_Chr3g0103631 | 65.806 | 155 | 53 | 0 | 10 | 164 | 8 | 162 | 4.08e-72 | 220 |
| Msa0567260 | MtrunA17_Chr3g0114581 | 32.646 | 291 | 188 | 3 | 19 | 306 | 22 | 307 | 9.38e-49 | 166 |
| Msa0567260 | MtrunA17_Chr1g0160071 | 32.404 | 287 | 192 | 1 | 19 | 305 | 21 | 305 | 2.73e-48 | 164 |
| Msa0567260 | MtrunA17_Chr2g0307091 | 35.473 | 296 | 177 | 7 | 16 | 305 | 18 | 305 | 1.13e-34 | 129 |
| Msa0567260 | MtrunA17_Chr3g0137921 | 32.313 | 294 | 189 | 4 | 16 | 305 | 22 | 309 | 5.77e-31 | 119 |
| Msa0567260 | MtrunA17_Chr7g0270591 | 29.260 | 311 | 210 | 4 | 1 | 307 | 4 | 308 | 3.48e-27 | 109 |
| Msa0567260 | MtrunA17_Chr4g0063601 | 31.081 | 296 | 162 | 9 | 16 | 305 | 18 | 277 | 1.17e-25 | 103 |
| Msa0567260 | MtrunA17_Chr2g0312911 | 25.796 | 314 | 218 | 6 | 1 | 307 | 1 | 306 | 9.22e-23 | 96.7 |
| Msa0567260 | MtrunA17_Chr4g0069261 | 28.322 | 286 | 197 | 3 | 25 | 307 | 24 | 304 | 2.12e-22 | 96.3 |
| Msa0567260 | MtrunA17_Chr6g0449891 | 27.852 | 298 | 206 | 4 | 14 | 306 | 115 | 408 | 1.96e-18 | 85.1 |
| Msa0567260 | MtrunA17_Chr4g0058971 | 26.578 | 301 | 201 | 9 | 15 | 306 | 88 | 377 | 8.24e-18 | 83.2 |
| Msa0567260 | MtrunA17_Chr8g0341861 | 24.172 | 302 | 203 | 7 | 14 | 298 | 171 | 463 | 3.10e-15 | 75.9 |
| Msa0567260 | MtrunA17_Chr2g0298931 | 29.966 | 297 | 177 | 11 | 14 | 301 | 63 | 337 | 4.07e-15 | 75.1 |
| Msa0567260 | MtrunA17_Chr3g0117501 | 26.389 | 216 | 151 | 2 | 96 | 306 | 190 | 402 | 5.64e-13 | 68.9 |
| Msa0567260 | MtrunA17_Chr5g0419001 | 25.658 | 304 | 201 | 11 | 18 | 307 | 110 | 402 | 9.43e-13 | 68.2 |
| Msa0567260 | MtrunA17_Chr3g0129401 | 23.693 | 287 | 211 | 4 | 22 | 307 | 24 | 303 | 3.68e-11 | 63.2 |
| Msa0567260 | MtrunA17_Chr4g0046561 | 25.490 | 306 | 201 | 12 | 19 | 309 | 106 | 399 | 5.02e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0567260 | AT5G04160.1 | 78.964 | 309 | 65 | 0 | 1 | 309 | 1 | 309 | 0.0 | 505 |
| Msa0567260 | AT3G10290.1 | 78.947 | 304 | 64 | 0 | 6 | 309 | 52 | 355 | 0.0 | 504 |
| Msa0567260 | AT3G11320.1 | 74.744 | 293 | 74 | 0 | 15 | 307 | 14 | 306 | 2.66e-158 | 444 |
| Msa0567260 | AT5G05820.1 | 73.038 | 293 | 79 | 0 | 15 | 307 | 14 | 306 | 2.14e-154 | 434 |
| Msa0567260 | AT1G12500.1 | 56.026 | 307 | 135 | 0 | 3 | 309 | 50 | 356 | 4.89e-120 | 349 |
| Msa0567260 | AT1G21870.1 | 33.564 | 289 | 188 | 3 | 19 | 306 | 22 | 307 | 6.13e-48 | 164 |
| Msa0567260 | AT1G77610.1 | 33.219 | 292 | 185 | 5 | 19 | 306 | 16 | 301 | 3.84e-47 | 162 |
| Msa0567260 | AT5G11230.1 | 34.459 | 296 | 180 | 7 | 16 | 305 | 22 | 309 | 9.24e-35 | 129 |
| Msa0567260 | AT5G25400.1 | 34.122 | 296 | 181 | 7 | 16 | 305 | 22 | 309 | 4.39e-33 | 125 |
| Msa0567260 | AT4G32390.1 | 34.797 | 296 | 179 | 7 | 16 | 305 | 22 | 309 | 2.03e-32 | 123 |
| Msa0567260 | AT2G25520.1 | 35.473 | 296 | 177 | 7 | 16 | 305 | 22 | 309 | 1.90e-31 | 120 |
| Msa0567260 | AT1G53660.1 | 29.066 | 289 | 190 | 6 | 25 | 307 | 30 | 309 | 1.87e-26 | 107 |
| Msa0567260 | AT1G53660.3 | 29.066 | 289 | 190 | 6 | 25 | 307 | 48 | 327 | 3.01e-26 | 106 |
| Msa0567260 | AT3G17430.2 | 29.268 | 287 | 193 | 5 | 25 | 307 | 25 | 305 | 6.00e-25 | 103 |
| Msa0567260 | AT3G17430.1 | 29.268 | 287 | 193 | 5 | 25 | 307 | 25 | 305 | 6.00e-25 | 103 |
| Msa0567260 | AT1G53660.4 | 28.832 | 274 | 182 | 5 | 38 | 307 | 11 | 275 | 6.11e-25 | 102 |
| Msa0567260 | AT3G14410.1 | 28.223 | 287 | 198 | 4 | 25 | 307 | 28 | 310 | 1.92e-23 | 99.0 |
| Msa0567260 | AT1G48230.1 | 29.825 | 285 | 190 | 5 | 25 | 305 | 25 | 303 | 1.71e-22 | 96.7 |
| Msa0567260 | AT1G53660.5 | 31.481 | 216 | 136 | 4 | 95 | 307 | 9 | 215 | 9.76e-22 | 92.0 |
| Msa0567260 | AT5G57100.1 | 30.450 | 289 | 172 | 9 | 24 | 301 | 76 | 346 | 1.91e-19 | 88.2 |
| Msa0567260 | AT5G57100.2 | 31.633 | 196 | 121 | 6 | 24 | 214 | 76 | 263 | 3.18e-16 | 77.8 |
| Msa0567260 | AT3G01550.1 | 24.407 | 295 | 213 | 5 | 17 | 306 | 84 | 373 | 1.28e-15 | 77.0 |
| Msa0567260 | AT1G48230.2 | 29.075 | 227 | 153 | 4 | 81 | 305 | 10 | 230 | 5.42e-15 | 74.3 |
| Msa0567260 | AT5G55950.4 | 30.584 | 291 | 169 | 10 | 24 | 301 | 9 | 279 | 1.17e-13 | 70.9 |
| Msa0567260 | AT1G06470.4 | 23.077 | 299 | 210 | 5 | 14 | 298 | 77 | 369 | 1.27e-13 | 71.2 |
| Msa0567260 | AT1G06470.2 | 23.077 | 299 | 210 | 5 | 14 | 298 | 77 | 369 | 1.27e-13 | 71.2 |
| Msa0567260 | AT1G06470.1 | 23.077 | 299 | 210 | 5 | 14 | 298 | 77 | 369 | 1.27e-13 | 71.2 |
| Msa0567260 | AT1G06470.3 | 23.077 | 299 | 210 | 5 | 14 | 298 | 77 | 369 | 1.27e-13 | 71.2 |
| Msa0567260 | AT5G55950.1 | 30.584 | 291 | 169 | 10 | 24 | 301 | 69 | 339 | 1.72e-13 | 70.9 |
| Msa0567260 | AT5G55950.2 | 32.828 | 198 | 116 | 7 | 24 | 214 | 69 | 256 | 1.42e-12 | 67.4 |
| Msa0567260 | AT3G01550.2 | 23.729 | 295 | 210 | 6 | 17 | 306 | 84 | 368 | 2.07e-12 | 67.4 |
| Msa0567260 | AT5G57100.3 | 36.879 | 141 | 78 | 5 | 24 | 159 | 76 | 210 | 2.98e-12 | 66.2 |
| Msa0567260 | AT5G46110.2 | 26.821 | 302 | 197 | 13 | 18 | 309 | 1 | 288 | 3.07e-12 | 66.6 |
| Msa0567260 | AT5G46110.4 | 26.821 | 302 | 197 | 13 | 18 | 309 | 114 | 401 | 1.25e-11 | 65.5 |
| Msa0567260 | AT5G46110.1 | 27.036 | 307 | 193 | 14 | 18 | 307 | 114 | 406 | 1.67e-11 | 65.1 |
| Msa0567260 | AT4G39390.1 | 25.850 | 294 | 196 | 7 | 22 | 307 | 29 | 308 | 1.73e-11 | 64.7 |
| Msa0567260 | AT4G39390.2 | 25.850 | 294 | 196 | 7 | 22 | 307 | 29 | 308 | 1.73e-11 | 64.7 |
| Msa0567260 | AT4G39390.3 | 26.190 | 294 | 195 | 8 | 22 | 307 | 25 | 304 | 1.88e-11 | 64.3 |
Find 48 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAAAAGAACATAAATTTA+TGG | 0.161882 | 4_1:-68605546 | Msa0567260:CDS |
| AAGTACCTTATCTCAAATTA+TGG | 0.221981 | 4_1:-68607383 | Msa0567260:CDS |
| ATCAAGGTCACAGTTCTTAA+AGG | 0.247185 | 4_1:-68607255 | Msa0567260:CDS |
| TGGTGATGGCAGGGTGAGCC+TGG | 0.262017 | 4_1:-68606505 | Msa0567260:intron |
| CAATATCTCTCTCAAGTATT+TGG | 0.275503 | 4_1:-68607189 | Msa0567260:CDS |
| AGCTTTCAAATCTGTTCTTC+AGG | 0.288805 | 4_1:-68606434 | Msa0567260:CDS |
| GAGCCTGGGTTTCACTTGTT+TGG | 0.295030 | 4_1:-68606490 | Msa0567260:CDS |
| AATTATGTTAATCAGGTATT+AGG | 0.309168 | 4_1:-68605127 | Msa0567260:intron |
| CAATAAAAGTGACAGGGTTT+TGG | 0.309718 | 4_1:+68605059 | None:intergenic |
| GCTCTTGTTCCTGTTGTTGC+TGG | 0.312689 | 4_1:-68607065 | Msa0567260:CDS |
| CTTAACTCAGCCGCAGCATA+TGG | 0.344628 | 4_1:-68605509 | Msa0567260:CDS |
| GGAAAAGAACATAAATTTAT+GGG | 0.351125 | 4_1:-68605545 | Msa0567260:CDS |
| AGCAAACTTAACAAACTTCT+TGG | 0.373328 | 4_1:-68605486 | Msa0567260:CDS |
| GGCTACTCAGTTACTGTAAT+GGG | 0.394558 | 4_1:-68605028 | Msa0567260:CDS |
| AACATGAATTCTTTGTTGTT+TGG | 0.399155 | 4_1:+68607464 | None:intergenic |
| GCTTTCAAATCTGTTCTTCA+GGG | 0.437125 | 4_1:-68606433 | Msa0567260:CDS |
| TTGCATACGGAGAAACAAAA+AGG | 0.447859 | 4_1:-68605000 | Msa0567260:CDS |
| TGACACATTGTGAGGAAGAT+TGG | 0.449241 | 4_1:+68607350 | None:intergenic |
| TGAAACCATAATTTGAGATA+AGG | 0.466205 | 4_1:+68607378 | None:intergenic |
| GGTGATGGCAGGGTGAGCCT+GGG | 0.473562 | 4_1:-68606504 | Msa0567260:intron |
| GCCATGCCAATAAAAGTGAC+AGG | 0.492901 | 4_1:+68605052 | None:intergenic |
| ATGGCAACACCAGCAACAAC+AGG | 0.493877 | 4_1:+68607056 | None:intergenic |
| CTCTTGCAGCGGTTGCACTT+AGG | 0.496429 | 4_1:+68606455 | None:intergenic |
| AGCGTGATATCTAAAACATT+CGG | 0.497597 | 4_1:+68605575 | None:intergenic |
| TGGCTACTCAGTTACTGTAA+TGG | 0.499480 | 4_1:-68605029 | Msa0567260:CDS |
| CTGCGATTGGAGACATATAC+AGG | 0.502629 | 4_1:+68605633 | None:intergenic |
| TACAAGTGCTTTGACACTCC+AGG | 0.510037 | 4_1:-68605453 | Msa0567260:intron |
| TTAGATATCACGCTATCACT+TGG | 0.514237 | 4_1:-68605566 | Msa0567260:CDS |
| GTTTCTTTCAACCAAGCTGT+AGG | 0.516484 | 4_1:-68607164 | Msa0567260:CDS |
| CTCAACAGATGATTAAATCA+AGG | 0.523888 | 4_1:-68607271 | Msa0567260:CDS |
| GGCTCCATGAAAACTACTGC+AGG | 0.527890 | 4_1:+68605596 | None:intergenic |
| CAGGTATTAGGCAATGCAAA+AGG | 0.533740 | 4_1:-68605115 | Msa0567260:CDS |
| GCTGGTGTTGCCATTGCAAG+TGG | 0.549715 | 4_1:-68607047 | Msa0567260:CDS |
| CTTGATTTAATCATCTGTTG+AGG | 0.555444 | 4_1:+68607272 | None:intergenic |
| AAAACATACCCCACTTGCAA+TGG | 0.557860 | 4_1:+68607037 | None:intergenic |
| CTGGTGTTGCCATTGCAAGT+GGG | 0.559180 | 4_1:-68607046 | Msa0567260:CDS |
| CTTTGGTACTCATCAAACAT+TGG | 0.563810 | 4_1:-68607422 | Msa0567260:CDS |
| TGGTGTTGCCATTGCAAGTG+GGG | 0.597605 | 4_1:-68607045 | Msa0567260:intron |
| GTAATGGGAGTTATTGCATA+CGG | 0.599804 | 4_1:-68605013 | Msa0567260:CDS |
| AGAGATATTGCCACCAACCA+CGG | 0.608135 | 4_1:+68607202 | None:intergenic |
| AATCCAAACAAGTGAAACCC+AGG | 0.628421 | 4_1:+68606487 | None:intergenic |
| CCATGCCAATAAAAGTGACA+GGG | 0.651043 | 4_1:+68605053 | None:intergenic |
| GTGTGGTTGCACCTACAGCT+TGG | 0.651188 | 4_1:+68607153 | None:intergenic |
| AACAATCTTAAAGAACACAA+TGG | 0.654847 | 4_1:+68607295 | None:intergenic |
| TAAGTTTGCTCCATATGCTG+CGG | 0.688898 | 4_1:+68605499 | None:intergenic |
| AGATTTGAAAGCTCTTGCAG+CGG | 0.693952 | 4_1:+68606444 | None:intergenic |
| AACAGCAGTGAAGAAAGGTG+TGG | 0.696609 | 4_1:+68607136 | None:intergenic |
| CTGTCATGTGACACATTGTG+AGG | 0.735310 | 4_1:+68607342 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAATTGCTTATAATAT+AGG | - | chr4_1:68605495-68605514 | Msa0567260:CDS | 10.0% |
| !! | AACAAATTAAAATTATCATA+TGG | + | chr4_1:68605898-68605917 | None:intergenic | 10.0% |
| !!! | TGATAATTTTAATTTGTTAT+TGG | - | chr4_1:68605900-68605919 | Msa0567260:intron | 10.0% |
| !!! | TTTTTTTTTGTTTGATTTGA+TGG | - | chr4_1:68605446-68605465 | Msa0567260:intron | 15.0% |
| !! | TTTATAATCAATTAGCATTT+AGG | - | chr4_1:68605763-68605782 | Msa0567260:intron | 15.0% |
| !! | TTAAGAATCCAAAAAAATAT+GGG | + | chr4_1:68606692-68606711 | None:intergenic | 15.0% |
| !! | ATTAAGAATCCAAAAAAATA+TGG | + | chr4_1:68606693-68606712 | None:intergenic | 15.0% |
| !!! | TAATTATATTTTTAGCTTTG+AGG | + | chr4_1:68607088-68607107 | None:intergenic | 15.0% |
| !!! | GAAATTATACATAGATGTTT+TGG | - | chr4_1:68605549-68605568 | Msa0567260:CDS | 20.0% |
| !!! | TGGTTTTGATTTTGAAATTA+TGG | - | chr4_1:68605569-68605588 | Msa0567260:CDS | 20.0% |
| !!! | TTTTGAAATTATGGATGTTT+TGG | - | chr4_1:68605578-68605597 | Msa0567260:CDS | 20.0% |
| !!! | GATTTTGGATTTTAATTTTC+TGG | - | chr4_1:68605677-68605696 | Msa0567260:intron | 20.0% |
| !! | TATAAAAATACCAAACAATC+TGG | + | chr4_1:68605749-68605768 | None:intergenic | 20.0% |
| !!! | CTAATTCATGACAATTTTTA+TGG | + | chr4_1:68605841-68605860 | None:intergenic | 20.0% |
| !! | CATAAAAATTGTCATGAATT+AGG | - | chr4_1:68605839-68605858 | Msa0567260:intron | 20.0% |
| !! | ATTAAAATTATCATATGGTG+TGG | + | chr4_1:68605893-68605912 | None:intergenic | 20.0% |
| !!! | ACATTTTTTTAGTATGTTGT+TGG | - | chr4_1:68605936-68605955 | Msa0567260:intron | 20.0% |
| !! | CTATGATTTCTAAATCATAT+TGG | - | chr4_1:68606093-68606112 | Msa0567260:intron | 20.0% |
| !!! | ATTTTATAGAACTGTTCTAA+AGG | - | chr4_1:68606172-68606191 | Msa0567260:intron | 20.0% |
| !! | CATTCTCACATATAAAAAAT+GGG | + | chr4_1:68606297-68606316 | None:intergenic | 20.0% |
| !! | TCATTCTCACATATAAAAAA+TGG | + | chr4_1:68606298-68606317 | None:intergenic | 20.0% |
| !! | TAAGAATCCAAAAAAATATG+GGG | + | chr4_1:68606691-68606710 | None:intergenic | 20.0% |
| !! | TGGAAAAGAACATAAATTTA+TGG | - | chr4_1:68606915-68606934 | Msa0567260:intron | 20.0% |
| !! | GGAAAAGAACATAAATTTAT+GGG | - | chr4_1:68606916-68606935 | Msa0567260:intron | 20.0% |
| !! | ATTATTATTACAACCTTCAA+TGG | - | chr4_1:68607127-68607146 | Msa0567260:CDS | 20.0% |
| !! | AATTATGTTAATCAGGTATT+AGG | - | chr4_1:68607334-68607353 | Msa0567260:CDS | 20.0% |
| !!! | AACATGAATTCTTTGTTGTT+TGG | + | chr4_1:68605000-68605019 | None:intergenic | 25.0% |
| ! | AAGTACCTTATCTCAAATTA+TGG | - | chr4_1:68605078-68605097 | Msa0567260:CDS | 25.0% |
| !! | TGAAACCATAATTTGAGATA+AGG | + | chr4_1:68605086-68605105 | None:intergenic | 25.0% |
| ! | AACAATCTTAAAGAACACAA+TGG | + | chr4_1:68605169-68605188 | None:intergenic | 25.0% |
| !! | TATAATATAGGTGTGTTGAT+TGG | - | chr4_1:68605507-68605526 | Msa0567260:CDS | 25.0% |
| ! | ATTAACTATATTTCCAGATC+TGG | + | chr4_1:68605625-68605644 | None:intergenic | 25.0% |
| !!! | TTTTTCAAATCTGTGACATT+TGG | - | chr4_1:68605655-68605674 | Msa0567260:CDS | 25.0% |
| !!! | TGTTATTTCATCTATTCATG+TGG | - | chr4_1:68605798-68605817 | Msa0567260:intron | 25.0% |
| !! | TTCATGACAATTTTTATGGT+AGG | + | chr4_1:68605837-68605856 | None:intergenic | 25.0% |
| ! | TAAAAAAATGTACACCATGT+TGG | + | chr4_1:68605927-68605946 | None:intergenic | 25.0% |
| ! | TATTTAGTTATTGTGAACTG+TGG | - | chr4_1:68606123-68606142 | Msa0567260:intron | 25.0% |
| ! | TTTATTATTCAGCTCTTTGT+TGG | - | chr4_1:68606200-68606219 | Msa0567260:intron | 25.0% |
| ! | CATATAAAAAATGGGATTCA+AGG | + | chr4_1:68606289-68606308 | None:intergenic | 25.0% |
| ! | TTCAATTGTGTATGAACAAT+GGG | + | chr4_1:68606443-68606462 | None:intergenic | 25.0% |
| ! | TTTCAATTGTGTATGAACAA+TGG | + | chr4_1:68606444-68606463 | None:intergenic | 25.0% |
| !! | CATCAGTGTATTAAAACTTT+TGG | + | chr4_1:68606470-68606489 | None:intergenic | 25.0% |
| ! | TATTTATCGCAAAGTAAAGA+AGG | + | chr4_1:68606607-68606626 | None:intergenic | 25.0% |
| ! | CTTTACTTTGCGATAAATAT+TGG | - | chr4_1:68606608-68606627 | Msa0567260:intron | 25.0% |
| !! | ATGTACATAAAAGTCACTTT+CGG | + | chr4_1:68607157-68607176 | None:intergenic | 25.0% |
| ! | TCTGTCAAATTATGTTAATC+AGG | - | chr4_1:68607327-68607346 | Msa0567260:CDS | 25.0% |
| ! | CATGTTCATATGTTTTCTTG+TGG | - | chr4_1:68605014-68605033 | Msa0567260:CDS | 30.0% |
| CTTGATTTAATCATCTGTTG+AGG | + | chr4_1:68605192-68605211 | None:intergenic | 30.0% | |
| CTCAACAGATGATTAAATCA+AGG | - | chr4_1:68605190-68605209 | Msa0567260:intron | 30.0% | |
| !!! | ACTTTGAGCTTTGTTTTTTG+TGG | - | chr4_1:68605234-68605253 | Msa0567260:intron | 30.0% |
| !!! | CTTTGAGCTTTGTTTTTTGT+GGG | - | chr4_1:68605235-68605254 | Msa0567260:intron | 30.0% |
| CAATATCTCTCTCAAGTATT+TGG | - | chr4_1:68605272-68605291 | Msa0567260:intron | 30.0% | |
| !!! | TTTAGCTACTTTTAAGAGAG+AGG | - | chr4_1:68605356-68605375 | Msa0567260:intron | 30.0% |
| ! | AATCTGTGACATTTGGATTT+TGG | - | chr4_1:68605662-68605681 | Msa0567260:CDS | 30.0% |
| !! | AATTTGTTATTGGACCAACA+TGG | - | chr4_1:68605910-68605929 | Msa0567260:intron | 30.0% |
| !! | TTTTAGTATGTTGTTGGTGA+TGG | - | chr4_1:68605942-68605961 | Msa0567260:intron | 30.0% |
| ! | GCATTTTACTTTCTTCTGAA+GGG | - | chr4_1:68606050-68606069 | Msa0567260:intron | 30.0% |
| TTAGCCACCAAATATCATTA+AGG | - | chr4_1:68606359-68606378 | Msa0567260:intron | 30.0% | |
| TTCTCCTTAATGATATTTGG+TGG | + | chr4_1:68606366-68606385 | None:intergenic | 30.0% | |
| GTGTTCTCCTTAATGATATT+TGG | + | chr4_1:68606369-68606388 | None:intergenic | 30.0% | |
| ATGCTTAATAAGCTGTGAAA+GGG | + | chr4_1:68606391-68606410 | None:intergenic | 30.0% | |
| TATGCTTAATAAGCTGTGAA+AGG | + | chr4_1:68606392-68606411 | None:intergenic | 30.0% | |
| TATGGTCAATTTCTATAGCT+TGG | + | chr4_1:68606651-68606670 | None:intergenic | 30.0% | |
| TAGAAATTGACCATAACTTG+AGG | - | chr4_1:68606656-68606675 | Msa0567260:intron | 30.0% | |
| ! | AGCGTGATATCTAAAACATT+CGG | + | chr4_1:68606889-68606908 | None:intergenic | 30.0% |
| AGCAAACTTAACAAACTTCT+TGG | - | chr4_1:68606975-68606994 | Msa0567260:intron | 30.0% | |
| GAGATAAAAAAAGACAAACC+TGG | + | chr4_1:68607029-68607048 | None:intergenic | 30.0% | |
| !! | GTGCTCATGATTTTTATTTG+TGG | + | chr4_1:68607058-68607077 | None:intergenic | 30.0% |
| ! | TATGTTTTCTTGTGGCTCTT+TGG | - | chr4_1:68605022-68605041 | Msa0567260:CDS | 35.0% |
| CTTTGGTACTCATCAAACAT+TGG | - | chr4_1:68605039-68605058 | Msa0567260:CDS | 35.0% | |
| ATCAAGGTCACAGTTCTTAA+AGG | - | chr4_1:68605206-68605225 | Msa0567260:intron | 35.0% | |
| ! | TATATTTCCAGATCTGGAGT+GGG | + | chr4_1:68605619-68605638 | None:intergenic | 35.0% |
| AGCTTTCAAATCTGTTCTTC+AGG | - | chr4_1:68606027-68606046 | Msa0567260:intron | 35.0% | |
| GCTTTCAAATCTGTTCTTCA+GGG | - | chr4_1:68606028-68606047 | Msa0567260:intron | 35.0% | |
| ! | GGCATTTTACTTTCTTCTGA+AGG | - | chr4_1:68606049-68606068 | Msa0567260:intron | 35.0% |
| AAGCAAAAGCAATGTTAAGC+TGG | + | chr4_1:68606576-68606595 | None:intergenic | 35.0% | |
| GAATCCAAAAAAATATGGGG+AGG | + | chr4_1:68606688-68606707 | None:intergenic | 35.0% | |
| TGCATAATCCTCGTTACATA+TGG | - | chr4_1:68606733-68606752 | Msa0567260:intron | 35.0% | |
| AACAAAAATACGACTGCGAT+TGG | + | chr4_1:68606844-68606863 | None:intergenic | 35.0% | |
| TTAGATATCACGCTATCACT+TGG | - | chr4_1:68606895-68606914 | Msa0567260:intron | 35.0% | |
| AACAAAGCTGAGTTAGCAAT+AGG | + | chr4_1:68607280-68607299 | None:intergenic | 35.0% | |
| ! | CAATAAAAGTGACAGGGTTT+TGG | + | chr4_1:68607405-68607424 | None:intergenic | 35.0% |
| !!! | CAAAACCCTGTCACTTTTAT+TGG | - | chr4_1:68607403-68607422 | Msa0567260:CDS | 35.0% |
| ! | GTAATGGGAGTTATTGCATA+CGG | - | chr4_1:68607448-68607467 | Msa0567260:CDS | 35.0% |
| TTGCATACGGAGAAACAAAA+AGG | - | chr4_1:68607461-68607480 | Msa0567260:CDS | 35.0% | |
| TGACACATTGTGAGGAAGAT+TGG | + | chr4_1:68605114-68605133 | None:intergenic | 40.0% | |
| GTTTCTTTCAACCAAGCTGT+AGG | - | chr4_1:68605297-68605316 | Msa0567260:intron | 40.0% | |
| GCAAAAACAGCAGTGAAGAA+AGG | + | chr4_1:68605333-68605352 | None:intergenic | 40.0% | |
| !! | CTACTTTTAAGAGAGAGGCT+TGG | - | chr4_1:68605361-68605380 | Msa0567260:intron | 40.0% |
| AAAACATACCCCACTTGCAA+TGG | + | chr4_1:68605427-68605446 | None:intergenic | 40.0% | |
| CTATATTTCCAGATCTGGAG+TGG | + | chr4_1:68605620-68605639 | None:intergenic | 40.0% | |
| TAGCAGATAGCCAGATTGTT+TGG | - | chr4_1:68605736-68605755 | Msa0567260:intron | 40.0% | |
| AATCCAAACAAGTGAAACCC+AGG | + | chr4_1:68605977-68605996 | None:intergenic | 40.0% | |
| AGATTTGAAAGCTCTTGCAG+CGG | + | chr4_1:68606020-68606039 | None:intergenic | 40.0% | |
| CCAAAAAAATATGGGGAGGA+AGG | + | chr4_1:68606684-68606703 | None:intergenic | 40.0% | |
| !!! | CCTTCCTCCCCATATTTTTT+TGG | - | chr4_1:68606681-68606700 | Msa0567260:intron | 40.0% |
| GTTCTTTGCCATATGTAACG+AGG | + | chr4_1:68606744-68606763 | None:intergenic | 40.0% | |
| TTCATCCATTTCAACCTACC+AGG | - | chr4_1:68606779-68606798 | Msa0567260:intron | 40.0% | |
| TCATCCATTTCAACCTACCA+GGG | - | chr4_1:68606780-68606799 | Msa0567260:intron | 40.0% | |
| ! | TAAGTTTGCTCCATATGCTG+CGG | + | chr4_1:68606965-68606984 | None:intergenic | 40.0% |
| CAGGTATTAGGCAATGCAAA+AGG | - | chr4_1:68607346-68607365 | Msa0567260:CDS | 40.0% | |
| CCATGCCAATAAAAGTGACA+GGG | + | chr4_1:68607411-68607430 | None:intergenic | 40.0% | |
| TGGCTACTCAGTTACTGTAA+TGG | - | chr4_1:68607432-68607451 | Msa0567260:CDS | 40.0% | |
| GGCTACTCAGTTACTGTAAT+GGG | - | chr4_1:68607433-68607452 | Msa0567260:CDS | 40.0% | |
| CATACGGAGAAACAAAAAGG+AGG | - | chr4_1:68607464-68607483 | Msa0567260:CDS | 40.0% | |
| CTGTCATGTGACACATTGTG+AGG | + | chr4_1:68605122-68605141 | None:intergenic | 45.0% | |
| !!! | CTTTGTTTTTTGTGGGTCCG+TGG | - | chr4_1:68605242-68605261 | Msa0567260:intron | 45.0% |
| AGAGATATTGCCACCAACCA+CGG | + | chr4_1:68605262-68605281 | None:intergenic | 45.0% | |
| AACAGCAGTGAAGAAAGGTG+TGG | + | chr4_1:68605328-68605347 | None:intergenic | 45.0% | |
| TTTCTGGATCTGCACTCATC+TGG | - | chr4_1:68605693-68605712 | Msa0567260:intron | 45.0% | |
| !! | AGTATGTTGTTGGTGATGGC+AGG | - | chr4_1:68605946-68605965 | Msa0567260:intron | 45.0% |
| !! | GTATGTTGTTGGTGATGGCA+GGG | - | chr4_1:68605947-68605966 | Msa0567260:intron | 45.0% |
| ! | TTCTCCCTGGTAGGTTGAAA+TGG | + | chr4_1:68606787-68606806 | None:intergenic | 45.0% |
| CATTGAGTTCAACTTCTCCC+TGG | + | chr4_1:68606800-68606819 | None:intergenic | 45.0% | |
| CTGCGATTGGAGACATATAC+AGG | + | chr4_1:68606831-68606850 | None:intergenic | 45.0% | |
| ! | GTTGCCTGCAGTAGTTTTCA+TGG | - | chr4_1:68606861-68606880 | Msa0567260:intron | 45.0% |
| TACAAGTGCTTTGACACTCC+AGG | - | chr4_1:68607008-68607027 | Msa0567260:intron | 45.0% | |
| ! | CACTTTCGGTTTGCCATTGA+AGG | + | chr4_1:68607143-68607162 | None:intergenic | 45.0% |
| !!! | AAGTGACAGGGTTTTGGAAC+AGG | + | chr4_1:68607399-68607418 | None:intergenic | 45.0% |
| !!! | CCCTGTCACTTTTATTGGCA+TGG | - | chr4_1:68607408-68607427 | Msa0567260:CDS | 45.0% |
| GCCATGCCAATAAAAGTGAC+AGG | + | chr4_1:68607412-68607431 | None:intergenic | 45.0% | |
| !!! | GTCACTTTTATTGGCATGGC+TGG | - | chr4_1:68607412-68607431 | Msa0567260:CDS | 45.0% |
| !!! | GTTTTTTGTGGGTCCGTGGT+TGG | - | chr4_1:68605246-68605265 | Msa0567260:intron | 50.0% |
| GCTCTTGTTCCTGTTGTTGC+TGG | - | chr4_1:68605396-68605415 | Msa0567260:intron | 50.0% | |
| ATGGCAACACCAGCAACAAC+AGG | + | chr4_1:68605408-68605427 | None:intergenic | 50.0% | |
| !! | CTGGTGTTGCCATTGCAAGT+GGG | - | chr4_1:68605415-68605434 | Msa0567260:intron | 50.0% |
| !! | TGGTGTTGCCATTGCAAGTG+GGG | - | chr4_1:68605416-68605435 | Msa0567260:intron | 50.0% |
| ! | CCAGATCTGGAGTGGGATTA+TGG | + | chr4_1:68605612-68605631 | None:intergenic | 50.0% |
| CCATAATCCCACTCCAGATC+TGG | - | chr4_1:68605609-68605628 | Msa0567260:CDS | 50.0% | |
| GAGCCTGGGTTTCACTTGTT+TGG | - | chr4_1:68605971-68605990 | Msa0567260:intron | 50.0% | |
| !! | GAGGAAGGCACCTCAAGTTA+TGG | + | chr4_1:68606669-68606688 | None:intergenic | 50.0% |
| GAGTTCAACTTCTCCCTGGT+AGG | + | chr4_1:68606796-68606815 | None:intergenic | 50.0% | |
| GGCTCCATGAAAACTACTGC+AGG | + | chr4_1:68606868-68606887 | None:intergenic | 50.0% | |
| CTTAACTCAGCCGCAGCATA+TGG | - | chr4_1:68606952-68606971 | Msa0567260:intron | 50.0% | |
| ! | TTTTGTGGGTCCGTGGTTGG+TGG | - | chr4_1:68605249-68605268 | Msa0567260:intron | 55.0% |
| GTGTGGTTGCACCTACAGCT+TGG | + | chr4_1:68605311-68605330 | None:intergenic | 55.0% | |
| !! | GCTGGTGTTGCCATTGCAAG+TGG | - | chr4_1:68605414-68605433 | Msa0567260:intron | 55.0% |
| CTCTTGCAGCGGTTGCACTT+AGG | + | chr4_1:68606009-68606028 | None:intergenic | 55.0% | |
| !! | TGGTGATGGCAGGGTGAGCC+TGG | - | chr4_1:68605956-68605975 | Msa0567260:intron | 65.0% |
| ! | GGTGATGGCAGGGTGAGCCT+GGG | - | chr4_1:68605957-68605976 | Msa0567260:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 68604988 | 68607495 | 68604988 | ID=Msa0567260;Name=Msa0567260 |
| chr4_1 | mRNA | 68604988 | 68607495 | 68604988 | ID=Msa0567260-mRNA-1;Parent=Msa0567260;Name=Msa0567260-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|4|0|309 |
| chr4_1 | exon | 68607046 | 68607495 | 68607046 | ID=Msa0567260-mRNA-1:exon:22679;Parent=Msa0567260-mRNA-1 |
| chr4_1 | exon | 68606412 | 68606515 | 68606412 | ID=Msa0567260-mRNA-1:exon:22678;Parent=Msa0567260-mRNA-1 |
| chr4_1 | exon | 68605454 | 68605682 | 68605454 | ID=Msa0567260-mRNA-1:exon:22677;Parent=Msa0567260-mRNA-1 |
| chr4_1 | exon | 68604988 | 68605134 | 68604988 | ID=Msa0567260-mRNA-1:exon:22676;Parent=Msa0567260-mRNA-1 |
| chr4_1 | CDS | 68607046 | 68607495 | 68607046 | ID=Msa0567260-mRNA-1:cds;Parent=Msa0567260-mRNA-1 |
| chr4_1 | CDS | 68606412 | 68606515 | 68606412 | ID=Msa0567260-mRNA-1:cds;Parent=Msa0567260-mRNA-1 |
| chr4_1 | CDS | 68605454 | 68605682 | 68605454 | ID=Msa0567260-mRNA-1:cds;Parent=Msa0567260-mRNA-1 |
| chr4_1 | CDS | 68604988 | 68605134 | 68604988 | ID=Msa0567260-mRNA-1:cds;Parent=Msa0567260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
