Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616370 | RHN42339.1 | 95.880 | 267 | 11 | 0 | 1 | 267 | 108 | 374 | 0.0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616370 | sp|Q8H129|PPA3_ARATH | 66.667 | 261 | 86 | 1 | 1 | 260 | 97 | 357 | 3.63e-131 | 378 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616370 | A0A396GMG7 | 95.880 | 267 | 11 | 0 | 1 | 267 | 108 | 374 | 0.0 | 541 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0616370 | Msa0724560 | 0.817209 | 3.713308e-52 | -8.615850e-47 |
| Msa0616370 | Msa0848900 | 0.817689 | 2.894101e-52 | -8.615850e-47 |
| Msa0616370 | Msa0982270 | 0.803747 | 3.007000e-49 | -8.615850e-47 |
| Msa0616370 | Msa1054410 | 0.802776 | 4.778986e-49 | -8.615850e-47 |
| Msa0616370 | Msa1307740 | 0.806666 | 7.362257e-50 | -8.615850e-47 |
| Msa0389810 | Msa0616370 | 0.806259 | 8.970985e-50 | -8.615850e-47 |
| Msa0468130 | Msa0616370 | 0.812657 | 3.796810e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616370 | MtrunA17_Chr8g0375821 | 95.880 | 267 | 11 | 0 | 1 | 267 | 108 | 374 | 0.0 | 541 |
| Msa0616370 | MtrunA17_Chr8g0375781 | 83.895 | 267 | 43 | 0 | 1 | 267 | 71 | 337 | 8.66e-172 | 477 |
| Msa0616370 | MtrunA17_Chr6g0479451 | 65.414 | 266 | 91 | 1 | 1 | 266 | 66 | 330 | 3.18e-129 | 369 |
| Msa0616370 | MtrunA17_Chr8g0393271 | 64.662 | 266 | 94 | 0 | 1 | 266 | 75 | 340 | 2.26e-128 | 367 |
| Msa0616370 | MtrunA17_Chr8g0375761 | 63.910 | 266 | 96 | 0 | 1 | 266 | 60 | 325 | 6.83e-128 | 365 |
| Msa0616370 | MtrunA17_Chr8g0375791 | 80.808 | 198 | 32 | 1 | 1 | 192 | 71 | 268 | 6.39e-116 | 336 |
| Msa0616370 | MtrunA17_Chr8g0375901 | 59.176 | 267 | 32 | 3 | 1 | 267 | 1 | 190 | 2.00e-102 | 296 |
| Msa0616370 | MtrunA17_Chr8g0375921 | 93.000 | 100 | 7 | 0 | 168 | 267 | 64 | 163 | 1.17e-64 | 199 |
| Msa0616370 | MtrunA17_Chr8g0375811 | 78.571 | 70 | 14 | 1 | 198 | 267 | 6 | 74 | 3.33e-33 | 115 |
| Msa0616370 | MtrunA17_Chr8g0375891 | 82.692 | 52 | 9 | 0 | 1 | 52 | 47 | 98 | 7.65e-26 | 99.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0616370 | AT1G14700.3 | 66.667 | 261 | 86 | 1 | 1 | 260 | 1 | 261 | 1.66e-132 | 375 |
| Msa0616370 | AT1G14700.1 | 66.667 | 261 | 86 | 1 | 1 | 260 | 97 | 357 | 3.69e-132 | 378 |
| Msa0616370 | AT2G01890.3 | 66.667 | 261 | 87 | 0 | 1 | 261 | 1 | 261 | 8.33e-132 | 374 |
| Msa0616370 | AT2G01880.1 | 66.794 | 262 | 86 | 1 | 1 | 262 | 64 | 324 | 1.59e-131 | 375 |
| Msa0616370 | AT2G01890.1 | 66.667 | 261 | 87 | 0 | 1 | 261 | 68 | 328 | 5.11e-131 | 374 |
| Msa0616370 | AT1G14700.2 | 65.900 | 261 | 86 | 2 | 1 | 260 | 97 | 355 | 8.42e-129 | 370 |
| Msa0616370 | AT1G25230.2 | 62.264 | 265 | 100 | 0 | 1 | 265 | 1 | 265 | 4.10e-128 | 364 |
| Msa0616370 | AT1G25230.1 | 62.264 | 265 | 100 | 0 | 1 | 265 | 69 | 333 | 2.30e-127 | 365 |
| Msa0616370 | AT3G17790.1 | 61.132 | 265 | 101 | 1 | 1 | 263 | 69 | 333 | 2.40e-127 | 365 |
| Msa0616370 | AT1G25230.3 | 62.264 | 265 | 100 | 0 | 1 | 265 | 92 | 356 | 4.84e-127 | 365 |
| Msa0616370 | AT2G01890.2 | 60.153 | 261 | 76 | 1 | 1 | 261 | 68 | 300 | 1.18e-109 | 319 |
| Msa0616370 | AT1G14700.4 | 70.312 | 192 | 57 | 0 | 1 | 192 | 97 | 288 | 8.56e-103 | 301 |
Find 47 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTTCATTATTTGGATTTA+TGG | 0.078726 | 4_2:-66197467 | None:intergenic |
| CAAATTTATAGTTCATTATT+TGG | 0.131865 | 4_2:-66197475 | None:intergenic |
| CAATCATATGTGTGATCTTC+TGG | 0.231458 | 4_2:-66195913 | None:intergenic |
| ACAACTTCTTCCCATCTTAA+AGG | 0.236717 | 4_2:+66196609 | Msa0616370:CDS |
| TGCCGCTGCGCTCATTTCTT+TGG | 0.256539 | 4_2:-66197388 | None:intergenic |
| AGTTCATTATTTGGATTTAT+GGG | 0.284943 | 4_2:-66197466 | None:intergenic |
| ATGGAGCACTCTTGCGCCTT+TGG | 0.314155 | 4_2:+66197507 | Msa0616370:three_prime_UTR |
| TGATACAACTTCAATTCTTT+CGG | 0.330995 | 4_2:-66197267 | None:intergenic |
| CATCTGAAAATCAAGCAAAA+AGG | 0.379541 | 4_2:-66195011 | None:intergenic |
| ATAGGATGTTGATTCAGCTT+TGG | 0.393421 | 4_2:+66196498 | Msa0616370:intron |
| TATAAATTTGTATGAACAAA+TGG | 0.394422 | 4_2:+66197488 | Msa0616370:three_prime_UTR |
| CAATGGACATGACCATTGTT+TGG | 0.396265 | 4_2:+66197062 | Msa0616370:CDS |
| TGATTCATTTACCTTTAAGA+TGG | 0.404549 | 4_2:-66196620 | None:intergenic |
| TGGTGCAATCCAATGCAAAA+TGG | 0.408430 | 4_2:+66196518 | Msa0616370:CDS |
| TTACCGTGCAGAACTCTTGA+AGG | 0.412521 | 4_2:+66195960 | Msa0616370:CDS |
| CCCCAAGCTTGCAAAAGGTT+TGG | 0.425904 | 4_2:+66195158 | Msa0616370:CDS |
| CAGAAGATCACACATATGAT+TGG | 0.445057 | 4_2:+66195914 | Msa0616370:CDS |
| CACAGCCCCAAGCTTGCAAA+AGG | 0.468832 | 4_2:+66195153 | Msa0616370:CDS |
| CATCATACCATCAAAACTGC+TGG | 0.469755 | 4_2:+66196556 | Msa0616370:CDS |
| TTCAATTCTTTCGGATCCCA+TGG | 0.475835 | 4_2:-66197258 | None:intergenic |
| AATATTGATGCATACATCAA+TGG | 0.479301 | 4_2:+66197045 | Msa0616370:CDS |
| CATCAAGAATAAAAGATCTC+AGG | 0.489601 | 4_2:-66195391 | None:intergenic |
| TTGGGAAACCATGACTATAG+AGG | 0.505653 | 4_2:+66195311 | Msa0616370:CDS |
| TTGCAAAAGGTTTGGTACAA+TGG | 0.509380 | 4_2:+66195166 | Msa0616370:CDS |
| ACAAATGATTCATAGAATGC+TGG | 0.525612 | 4_2:-66195121 | None:intergenic |
| ATCAAAACTGCTGGGCATCA+TGG | 0.530199 | 4_2:+66196565 | Msa0616370:CDS |
| GATTCATTTACCTTTAAGAT+GGG | 0.539095 | 4_2:-66196619 | None:intergenic |
| CAACATCACCTCTATAGTCA+TGG | 0.550806 | 4_2:-66195319 | None:intergenic |
| CAATGCAAAATGGAAGATAG+TGG | 0.562413 | 4_2:+66196528 | Msa0616370:CDS |
| TCTGCACAGACATGAATCCT+TGG | 0.566209 | 4_2:-66197296 | None:intergenic |
| ATCATACCATCAAAACTGCT+GGG | 0.588980 | 4_2:+66196557 | Msa0616370:CDS |
| CGATTATGTGCTCCAAACAA+TGG | 0.594543 | 4_2:-66197074 | None:intergenic |
| TGCAAAATGGAAGATAGTGG+TGG | 0.595021 | 4_2:+66196531 | Msa0616370:CDS |
| TGGTAATACACAAGAGCTTG+AGG | 0.601904 | 4_2:+66196585 | Msa0616370:CDS |
| GGAGAGGCGATATCAAGCCA+TGG | 0.602689 | 4_2:+66197241 | Msa0616370:CDS |
| GATCACACATATGATTGGAA+TGG | 0.605666 | 4_2:+66195919 | Msa0616370:CDS |
| GTGGAGGCGGATCAAAAGCA+TGG | 0.606021 | 4_2:+66197220 | Msa0616370:CDS |
| AAGTTGTATCATGACGGCCA+AGG | 0.613007 | 4_2:+66197279 | Msa0616370:CDS |
| GAGAGGCGATATCAAGCCAT+GGG | 0.616411 | 4_2:+66197242 | Msa0616370:CDS |
| AGCACATAATCGACAAAGAG+AGG | 0.620476 | 4_2:+66197085 | Msa0616370:CDS |
| GAATATAATAACAAGTCCAA+AGG | 0.620980 | 4_2:-66197523 | None:intergenic |
| GCAAAATGGAAGATAGTGGT+GGG | 0.633040 | 4_2:+66196532 | Msa0616370:CDS |
| GGCGGATCAAAAGCATGGAG+AGG | 0.643860 | 4_2:+66197225 | Msa0616370:CDS |
| GAATTGAAGTTGTATCATGA+CGG | 0.657999 | 4_2:+66197273 | Msa0616370:CDS |
| TAACCTTCAAGAGTTCTGCA+CGG | 0.673634 | 4_2:-66195963 | None:intergenic |
| AACCAAAGAAATGAGCGCAG+CGG | 0.709971 | 4_2:+66197386 | Msa0616370:CDS |
| TCTGCACGGTAAGATTCGCG+AGG | 0.711683 | 4_2:-66195949 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTAAAATGAAAAATAATAAT+TGG | - | chr4_2:66195281-66195300 | None:intergenic | 10.0% |
| !!! | AAAAAAATAGTTTACTTTTA+AGG | + | chr4_2:66195461-66195480 | Msa0616370:intron | 10.0% |
| !!! | AAATATTTTTTGCAAAATAA+CGG | - | chr4_2:66196068-66196087 | None:intergenic | 10.0% |
| !!! | TATTATTTTTCATTTTACTG+TGG | + | chr4_2:66195283-66195302 | Msa0616370:intron | 15.0% |
| !!! | TGGTATAAAATTTTATTTAG+AGG | - | chr4_2:66195488-66195507 | None:intergenic | 15.0% |
| !!! | AAATTTTATACCAAGAAATT+TGG | + | chr4_2:66195495-66195514 | Msa0616370:intron | 15.0% |
| !!! | ATTTTTTAATGGTGATTTTA+TGG | + | chr4_2:66195545-66195564 | Msa0616370:intron | 15.0% |
| !!! | ACCAAAAAAATATCTTTTTA+CGG | + | chr4_2:66195727-66195746 | Msa0616370:intron | 15.0% |
| !! | CAAATTTATAGTTCATTATT+TGG | - | chr4_2:66197478-66197497 | None:intergenic | 15.0% |
| !! | TATAAATTTGTATGAACAAA+TGG | + | chr4_2:66197488-66197507 | Msa0616370:three_prime_UTR | 15.0% |
| !! | ATAAGAAAAATGAAAATCAC+TGG | - | chr4_2:66195236-66195255 | None:intergenic | 20.0% |
| !!! | TATCTTTTTGTCTTAGAATT+GGG | - | chr4_2:66195358-66195377 | None:intergenic | 20.0% |
| !!! | TTGAAACACACATTTTTTAA+TGG | + | chr4_2:66195534-66195553 | Msa0616370:intron | 20.0% |
| !! | ATGAAGAAAAAGATCATTAT+CGG | - | chr4_2:66195589-66195608 | None:intergenic | 20.0% |
| !!! | AAGATATTTTTTTGGTTACA+AGG | - | chr4_2:66195723-66195742 | None:intergenic | 20.0% |
| !!! | TCCGTAAAAAGATATTTTTT+TGG | - | chr4_2:66195731-66195750 | None:intergenic | 20.0% |
| !!! | TTTTGTAGAAAAGTACTTTA+CGG | + | chr4_2:66195888-66195907 | Msa0616370:CDS | 20.0% |
| !!! | TGTTTCAATAAGTAACATTT+TGG | + | chr4_2:66196364-66196383 | Msa0616370:intron | 20.0% |
| !!! | GTTTCAATAAGTAACATTTT+GGG | + | chr4_2:66196365-66196384 | Msa0616370:intron | 20.0% |
| !! | TAAATATGAGAATGACAATT+TGG | - | chr4_2:66196647-66196666 | None:intergenic | 20.0% |
| !! | TTATAAATGTACATCATACA+TGG | + | chr4_2:66196713-66196732 | Msa0616370:intron | 20.0% |
| !!! | TGTATTTTTCCTAAATATCA+GGG | - | chr4_2:66196802-66196821 | None:intergenic | 20.0% |
| !!! | ATGTATTTTTCCTAAATATC+AGG | - | chr4_2:66196803-66196822 | None:intergenic | 20.0% |
| !! | AGTTCATTATTTGGATTTAT+GGG | - | chr4_2:66197469-66197488 | None:intergenic | 20.0% |
| !! | TAGTTCATTATTTGGATTTA+TGG | - | chr4_2:66197470-66197489 | None:intergenic | 20.0% |
| !! | TTTTTGCTTGATTTTCAGAT+GGG | + | chr4_2:66195013-66195032 | Msa0616370:exon | 25.0% |
| ! | ATCTTCATAAAAATTGTCAC+CGG | - | chr4_2:66195080-66195099 | None:intergenic | 25.0% |
| !! | TTTTATGAAGATGGTTTAGA+AGG | + | chr4_2:66195088-66195107 | Msa0616370:CDS | 25.0% |
| !! | CTATCTTTTTGTCTTAGAAT+TGG | - | chr4_2:66195359-66195378 | None:intergenic | 25.0% |
| ! | TGTTAAGTATCCAAATTTCT+TGG | - | chr4_2:66195508-66195527 | None:intergenic | 25.0% |
| !!! | TTGTGTGCTTTTTTTTTTAC+AGG | + | chr4_2:66195832-66195851 | Msa0616370:intron | 25.0% |
| !!! | GTAAAGTACTTTTCTACAAA+AGG | - | chr4_2:66195889-66195908 | None:intergenic | 25.0% |
| !!! | ATTTATTTTGAGAGATTGAG+AGG | - | chr4_2:66196170-66196189 | None:intergenic | 25.0% |
| ! | CAATCTCTCAAAATAAATGA+TGG | + | chr4_2:66196172-66196191 | Msa0616370:intron | 25.0% |
| !! | ATGATGGAATCTATTTATAG+AGG | + | chr4_2:66196188-66196207 | Msa0616370:intron | 25.0% |
| !! | TAGAATCCAATATCTACTTT+TGG | - | chr4_2:66196220-66196239 | None:intergenic | 25.0% |
| ! | ACTCAAACTCTATTAAGAAA+TGG | + | chr4_2:66196264-66196283 | Msa0616370:intron | 25.0% |
| !!! | GATTCATTTACCTTTAAGAT+GGG | - | chr4_2:66196622-66196641 | None:intergenic | 25.0% |
| !! | TGATTCATTTACCTTTAAGA+TGG | - | chr4_2:66196623-66196642 | None:intergenic | 25.0% |
| ! | ATACATAGTAATTACCATCT+AGG | + | chr4_2:66196747-66196766 | Msa0616370:intron | 25.0% |
| ! | AATATTGATGCATACATCAA+TGG | + | chr4_2:66197045-66197064 | Msa0616370:CDS | 25.0% |
| ! | TGATACAACTTCAATTCTTT+CGG | - | chr4_2:66197270-66197289 | None:intergenic | 25.0% |
| ! | GAATATAATAACAAGTCCAA+AGG | - | chr4_2:66197526-66197545 | None:intergenic | 25.0% |
| ! | ATAGATTTTGTGATCTCAAC+CGG | + | chr4_2:66195058-66195077 | Msa0616370:CDS | 30.0% |
| ! | GGTGACAATTTTTATGAAGA+TGG | + | chr4_2:66195079-66195098 | Msa0616370:CDS | 30.0% |
| ACAAATGATTCATAGAATGC+TGG | - | chr4_2:66195124-66195143 | None:intergenic | 30.0% | |
| GTACAATGGTAAGTTGTTAA+AGG | + | chr4_2:66195180-66195199 | Msa0616370:intron | 30.0% | |
| TAAGACAAAAAGATAGCAGA+TGG | + | chr4_2:66195363-66195382 | Msa0616370:CDS | 30.0% | |
| AAGACAAAAAGATAGCAGAT+GGG | + | chr4_2:66195364-66195383 | Msa0616370:CDS | 30.0% | |
| CATCAAGAATAAAAGATCTC+AGG | - | chr4_2:66195394-66195413 | None:intergenic | 30.0% | |
| ! | CTGAGATCTTTTATTCTTGA+TGG | + | chr4_2:66195392-66195411 | Msa0616370:CDS | 30.0% |
| ! | AGATCTTTTATTCTTGATGG+AGG | + | chr4_2:66195395-66195414 | Msa0616370:CDS | 30.0% |
| AAAAAGATCATTATCGGATG+TGG | - | chr4_2:66195583-66195602 | None:intergenic | 30.0% | |
| AAAATTTAACAAGTCGTGCT+TGG | + | chr4_2:66196007-66196026 | Msa0616370:intron | 30.0% | |
| !!! | ATAAGTAACATTTTGGGTTC+TGG | + | chr4_2:66196371-66196390 | Msa0616370:intron | 30.0% |
| GAGAAGCTGTCAATTATATT+TGG | + | chr4_2:66196460-66196479 | Msa0616370:intron | 30.0% | |
| GTCAATTATATTTGGCATTC+TGG | + | chr4_2:66196468-66196487 | Msa0616370:intron | 30.0% | |
| CATTGTCATGTGAAAAAATG+AGG | - | chr4_2:66196686-66196705 | None:intergenic | 30.0% | |
| ! | ACTAATATGCTTCTTTTGAG+AGG | - | chr4_2:66196834-66196853 | None:intergenic | 30.0% |
| TTATGAGTAAAAACGAACAG+AGG | + | chr4_2:66196907-66196926 | Msa0616370:intron | 30.0% | |
| TATGAGTAAAAACGAACAGA+GGG | + | chr4_2:66196908-66196927 | Msa0616370:intron | 30.0% | |
| AAACCATAACAAACCTACAA+CGG | + | chr4_2:66196947-66196966 | Msa0616370:intron | 30.0% | |
| ATGCATCAATATTGTTTGAC+TGG | - | chr4_2:66197038-66197057 | None:intergenic | 30.0% | |
| GGTTTGAATAAACATTGTAG+TGG | + | chr4_2:66197180-66197199 | Msa0616370:intron | 30.0% | |
| GAATTGAAGTTGTATCATGA+CGG | + | chr4_2:66197273-66197292 | Msa0616370:CDS | 30.0% | |
| ! | GTTGTATTCTATGACGTTTT+TGG | + | chr4_2:66197339-66197358 | Msa0616370:CDS | 30.0% |
| ! | GATTTTCAGATGGGAATTGT+AGG | + | chr4_2:66195022-66195041 | Msa0616370:exon | 35.0% |
| ! | TTGCAAAAGGTTTGGTACAA+TGG | + | chr4_2:66195166-66195185 | Msa0616370:CDS | 35.0% |
| ! | TCATTTTACTGTGGCAGTTT+TGG | + | chr4_2:66195292-66195311 | Msa0616370:intron | 35.0% |
| ! | CATTTTACTGTGGCAGTTTT+GGG | + | chr4_2:66195293-66195312 | Msa0616370:intron | 35.0% |
| ! | GGTGATTTTATGGTTAAGCT+TGG | + | chr4_2:66195555-66195574 | Msa0616370:intron | 35.0% |
| CTTCATCATTCTCCATCAAA+AGG | + | chr4_2:66195603-66195622 | Msa0616370:intron | 35.0% | |
| AAGGTCTCCTGAATCTTAAA+CGG | + | chr4_2:66195622-66195641 | Msa0616370:intron | 35.0% | |
| CAATCATATGTGTGATCTTC+TGG | - | chr4_2:66195916-66195935 | None:intergenic | 35.0% | |
| CAGAAGATCACACATATGAT+TGG | + | chr4_2:66195914-66195933 | Msa0616370:CDS | 35.0% | |
| GATCACACATATGATTGGAA+TGG | + | chr4_2:66195919-66195938 | Msa0616370:CDS | 35.0% | |
| CACACACCAAAAGTAGATAT+TGG | + | chr4_2:66196211-66196230 | Msa0616370:intron | 35.0% | |
| GTTCTACTCTATGACTGTTT+AGG | - | chr4_2:66196297-66196316 | None:intergenic | 35.0% | |
| !!! | TGGCATTCTGGAATTTTCAT+AGG | + | chr4_2:66196480-66196499 | Msa0616370:intron | 35.0% |
| !! | ATAGGATGTTGATTCAGCTT+TGG | + | chr4_2:66196498-66196517 | Msa0616370:intron | 35.0% |
| ! | CACTATCTTCCATTTTGCAT+TGG | - | chr4_2:66196530-66196549 | None:intergenic | 35.0% |
| CAATGCAAAATGGAAGATAG+TGG | + | chr4_2:66196528-66196547 | Msa0616370:CDS | 35.0% | |
| ATCATACCATCAAAACTGCT+GGG | + | chr4_2:66196557-66196576 | Msa0616370:CDS | 35.0% | |
| ACAACTTCTTCCCATCTTAA+AGG | + | chr4_2:66196609-66196628 | Msa0616370:CDS | 35.0% | |
| TACATCATACATGGCTTAGT+GGG | + | chr4_2:66196722-66196741 | Msa0616370:intron | 35.0% | |
| !! | TAACCGTTGTAGGTTTGTTA+TGG | - | chr4_2:66196953-66196972 | None:intergenic | 35.0% |
| TCAACAATAGTAACCGTTGT+AGG | - | chr4_2:66196963-66196982 | None:intergenic | 35.0% | |
| GGAAAAAATAGTGCAGAAAG+TGG | - | chr4_2:66197017-66197036 | None:intergenic | 35.0% | |
| !! | GGAATTCCATTTTTCACAAG+TGG | + | chr4_2:66197201-66197220 | Msa0616370:CDS | 35.0% |
| !! | ATTCCATTTTTCACAAGTGG+AGG | + | chr4_2:66197204-66197223 | Msa0616370:CDS | 35.0% |
| ! | TTGGCAAAGTTTTGCATAGA+TGG | + | chr4_2:66197358-66197377 | Msa0616370:CDS | 35.0% |
| ! | ACCAAACCTTTTGCAAGCTT+GGG | - | chr4_2:66195162-66195181 | None:intergenic | 40.0% |
| ! | TACCAAACCTTTTGCAAGCT+TGG | - | chr4_2:66195163-66195182 | None:intergenic | 40.0% |
| TTGGGAAACCATGACTATAG+AGG | + | chr4_2:66195311-66195330 | Msa0616370:CDS | 40.0% | |
| CAACATCACCTCTATAGTCA+TGG | - | chr4_2:66195322-66195341 | None:intergenic | 40.0% | |
| ! | AGATTCAGGAGACCTTTTGA+TGG | - | chr4_2:66195618-66195637 | None:intergenic | 40.0% |
| AGGTCTCCTGAATCTTAAAC+GGG | + | chr4_2:66195623-66195642 | Msa0616370:intron | 40.0% | |
| TAACCTTCAAGAGTTCTGCA+CGG | - | chr4_2:66195966-66195985 | None:intergenic | 40.0% | |
| AATGTGTCACAGAGTTGTCA+TGG | + | chr4_2:66196108-66196127 | Msa0616370:intron | 40.0% | |
| TGGTGCAATCCAATGCAAAA+TGG | + | chr4_2:66196518-66196537 | Msa0616370:CDS | 40.0% | |
| ! | TGCAAAATGGAAGATAGTGG+TGG | + | chr4_2:66196531-66196550 | Msa0616370:CDS | 40.0% |
| ! | GCAAAATGGAAGATAGTGGT+GGG | + | chr4_2:66196532-66196551 | Msa0616370:CDS | 40.0% |
| CATCATACCATCAAAACTGC+TGG | + | chr4_2:66196556-66196575 | Msa0616370:CDS | 40.0% | |
| TGGTAATACACAAGAGCTTG+AGG | + | chr4_2:66196585-66196604 | Msa0616370:CDS | 40.0% | |
| GTACATCATACATGGCTTAG+TGG | + | chr4_2:66196721-66196740 | Msa0616370:intron | 40.0% | |
| ! | AATTACCATCTAGGACACCA+AGG | + | chr4_2:66196756-66196775 | Msa0616370:intron | 40.0% |
| ! | CAGGAGTTTTCAATATGCCT+TGG | - | chr4_2:66196776-66196795 | None:intergenic | 40.0% |
| TTCCTAAATATCAGGGAGAC+AGG | - | chr4_2:66196795-66196814 | None:intergenic | 40.0% | |
| CAATGGACATGACCATTGTT+TGG | + | chr4_2:66197062-66197081 | Msa0616370:CDS | 40.0% | |
| CGATTATGTGCTCCAAACAA+TGG | - | chr4_2:66197077-66197096 | None:intergenic | 40.0% | |
| AGCACATAATCGACAAAGAG+AGG | + | chr4_2:66197085-66197104 | Msa0616370:CDS | 40.0% | |
| !! | CTCTGAAATTGAAGCTTCGT+TGG | + | chr4_2:66197159-66197178 | Msa0616370:intron | 40.0% |
| TTCAATTCTTTCGGATCCCA+TGG | - | chr4_2:66197261-66197280 | None:intergenic | 40.0% | |
| ! | CCAAACCTTTTGCAAGCTTG+GGG | - | chr4_2:66195161-66195180 | None:intergenic | 45.0% |
| TTACCGTGCAGAACTCTTGA+AGG | + | chr4_2:66195960-66195979 | Msa0616370:CDS | 45.0% | |
| !! | ATGATGCCCAGCAGTTTTGA+TGG | - | chr4_2:66196566-66196585 | None:intergenic | 45.0% |
| ATCAAAACTGCTGGGCATCA+TGG | + | chr4_2:66196565-66196584 | Msa0616370:CDS | 45.0% | |
| !! | ATATGCCTTGGTGTCCTAGA+TGG | - | chr4_2:66196764-66196783 | None:intergenic | 45.0% |
| CTCCTGTCTCCCTGATATTT+AGG | + | chr4_2:66196790-66196809 | Msa0616370:intron | 45.0% | |
| !! | CCATTTTTCACAAGTGGAGG+CGG | + | chr4_2:66197207-66197226 | Msa0616370:CDS | 45.0% |
| AAGTTGTATCATGACGGCCA+AGG | + | chr4_2:66197279-66197298 | Msa0616370:CDS | 45.0% | |
| TCTGCACAGACATGAATCCT+TGG | - | chr4_2:66197299-66197318 | None:intergenic | 45.0% | |
| AACCAAAGAAATGAGCGCAG+CGG | + | chr4_2:66197386-66197405 | Msa0616370:CDS | 45.0% | |
| CCCCAAGCTTGCAAAAGGTT+TGG | + | chr4_2:66195158-66195177 | Msa0616370:CDS | 50.0% | |
| ! | GCTGTGCCCGTTTAAGATTC+AGG | - | chr4_2:66195632-66195651 | None:intergenic | 50.0% |
| GAATCTTAAACGGGCACAGC+TGG | + | chr4_2:66195632-66195651 | Msa0616370:intron | 50.0% | |
| CCGCCTCCACTTGTGAAAAA+TGG | - | chr4_2:66197210-66197229 | None:intergenic | 50.0% | |
| GAGAGGCGATATCAAGCCAT+GGG | + | chr4_2:66197242-66197261 | Msa0616370:CDS | 50.0% | |
| CACAGCCCCAAGCTTGCAAA+AGG | + | chr4_2:66195153-66195172 | Msa0616370:CDS | 55.0% | |
| TCTGCACGGTAAGATTCGCG+AGG | - | chr4_2:66195952-66195971 | None:intergenic | 55.0% | |
| GTGGAGGCGGATCAAAAGCA+TGG | + | chr4_2:66197220-66197239 | Msa0616370:CDS | 55.0% | |
| ! | GGCGGATCAAAAGCATGGAG+AGG | + | chr4_2:66197225-66197244 | Msa0616370:CDS | 55.0% |
| GGAGAGGCGATATCAAGCCA+TGG | + | chr4_2:66197241-66197260 | Msa0616370:CDS | 55.0% | |
| TGCCGCTGCGCTCATTTCTT+TGG | - | chr4_2:66197391-66197410 | None:intergenic | 55.0% | |
| ! | ATGGAGCACTCTTGCGCCTT+TGG | + | chr4_2:66197507-66197526 | Msa0616370:three_prime_UTR | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 66195013 | 66197560 | 66195013 | ID=Msa0616370;Name=Msa0616370 |
| chr4_2 | mRNA | 66195013 | 66197560 | 66195013 | ID=Msa0616370-mRNA-1;Parent=Msa0616370;Name=Msa0616370-mRNA-1;_AED=0.22;_eAED=0.22;_QI=18|1|1|1|1|1|6|147|267 |
| chr4_2 | exon | 66195013 | 66195187 | 66195013 | ID=Msa0616370-mRNA-1:exon:18831;Parent=Msa0616370-mRNA-1 |
| chr4_2 | exon | 66195309 | 66195416 | 66195309 | ID=Msa0616370-mRNA-1:exon:18832;Parent=Msa0616370-mRNA-1 |
| chr4_2 | exon | 66195854 | 66195981 | 66195854 | ID=Msa0616370-mRNA-1:exon:18833;Parent=Msa0616370-mRNA-1 |
| chr4_2 | exon | 66196502 | 66196630 | 66196502 | ID=Msa0616370-mRNA-1:exon:18834;Parent=Msa0616370-mRNA-1 |
| chr4_2 | exon | 66197039 | 66197106 | 66197039 | ID=Msa0616370-mRNA-1:exon:18835;Parent=Msa0616370-mRNA-1 |
| chr4_2 | exon | 66197200 | 66197560 | 66197200 | ID=Msa0616370-mRNA-1:exon:18836;Parent=Msa0616370-mRNA-1 |
| chr4_2 | five_prime_UTR | 66195013 | 66195030 | 66195013 | ID=Msa0616370-mRNA-1:five_prime_utr;Parent=Msa0616370-mRNA-1 |
| chr4_2 | CDS | 66195031 | 66195187 | 66195031 | ID=Msa0616370-mRNA-1:cds;Parent=Msa0616370-mRNA-1 |
| chr4_2 | CDS | 66195309 | 66195416 | 66195309 | ID=Msa0616370-mRNA-1:cds;Parent=Msa0616370-mRNA-1 |
| chr4_2 | CDS | 66195854 | 66195981 | 66195854 | ID=Msa0616370-mRNA-1:cds;Parent=Msa0616370-mRNA-1 |
| chr4_2 | CDS | 66196502 | 66196630 | 66196502 | ID=Msa0616370-mRNA-1:cds;Parent=Msa0616370-mRNA-1 |
| chr4_2 | CDS | 66197039 | 66197106 | 66197039 | ID=Msa0616370-mRNA-1:cds;Parent=Msa0616370-mRNA-1 |
| chr4_2 | CDS | 66197200 | 66197413 | 66197200 | ID=Msa0616370-mRNA-1:cds;Parent=Msa0616370-mRNA-1 |
| chr4_2 | three_prime_UTR | 66197414 | 66197560 | 66197414 | ID=Msa0616370-mRNA-1:three_prime_utr;Parent=Msa0616370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
