AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0389810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389810 MtrunA17_Chr3g0122361 84.694 196 18 3 1 195 1 185 1.36e-114 323
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0389810 AT1G27300.1 34.146 205 100 7 1 185 1 190 4.67e-21 86.7

Find 68 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCATTCCTTTCCGAAATT+TGG 0.127733 3_2:+203903 None:intergenic
TTATATTGAAAAGTTAATTA+AGG 0.217773 3_2:-203824 Msa0389810:three_prime_UTR
ACACAAGAGACGTGCCTTAT+TGG 0.220983 3_2:+204706 None:intergenic
CAATAAGTATGAAATCTTTA+AGG 0.247081 3_2:-203679 Msa0389810:three_prime_UTR
ATTCAGTTTCGTGGTCTTTA+AGG 0.248448 3_2:+204501 None:intergenic
ATACTCCCAACGGATCTAAA+TGG 0.272675 3_2:+204047 None:intergenic
AGATTTCTCTCCGGCGGTTA+TGG 0.300517 3_2:-204606 Msa0389810:exon
ACATCCATGTTGGTCATATC+TGG 0.303699 3_2:+203927 None:intergenic
GCAGAAGCCACCTGCTTTGA+AGG 0.325878 3_2:+204272 None:intergenic
TATATTGAAAAGTTAATTAA+GGG 0.344507 3_2:-203823 Msa0389810:three_prime_UTR
AACATGGATGTACCAAATTT+CGG 0.350139 3_2:-203915 Msa0389810:CDS
CAACAAACCGCAAGCCAATA+AGG 0.352087 3_2:-204720 Msa0389810:five_prime_UTR
GATAATCAAAGAGCTGAAAA+AGG 0.382164 3_2:-204186 Msa0389810:CDS
TGGAGTGGGAAAGTGCTTTG+TGG 0.411080 3_2:+204769 None:intergenic
CGGCGGTTATGGAGCAAGAT+AGG 0.419703 3_2:-204595 Msa0389810:exon
ACTATATGCCACTTTCCTCT+TGG 0.437773 3_2:+204749 None:intergenic
CCACCTACTCTCTGTCTCTC+AGG 0.446309 3_2:-204462 Msa0389810:intron
TGTTTCTAGCAGCCATGGTC+AGG 0.446396 3_2:-204003 Msa0389810:CDS
TACGCAAATGCCACTAGAAA+AGG 0.452114 3_2:+203704 None:intergenic
GTTGATCATCCACTCTCAAT+TGG 0.453754 3_2:-203860 Msa0389810:three_prime_UTR
CTTTGAAGGACTAGATGCTT+CGG 0.454664 3_2:+204286 None:intergenic
TACTCCCAACGGATCTAAAT+GGG 0.474977 3_2:+204048 None:intergenic
TTCTGTGTAATTGTGTCAAA+AGG 0.476545 3_2:-203736 Msa0389810:three_prime_UTR
AACCACCCATTTAGATCCGT+TGG 0.484895 3_2:-204053 Msa0389810:CDS
TAGCAGTTGGAAATGTCTAA+AGG 0.502031 3_2:-204329 Msa0389810:CDS
ACCACCCATTTAGATCCGTT+GGG 0.504389 3_2:-204052 Msa0389810:CDS
TCTGCAATTGAGAAAACAAA+AGG 0.510878 3_2:-204254 Msa0389810:CDS
CCTGAGAGACAGAGAGTAGG+TGG 0.533620 3_2:+204462 None:intergenic
AGCATCTAGTCCTTCAAAGC+AGG 0.533942 3_2:-204282 Msa0389810:CDS
TGCCACTTTCCTCTTGGAGT+GGG 0.534992 3_2:+204755 None:intergenic
TGATTGTCCTCACTGTGGCT+TGG 0.535081 3_2:-204121 Msa0389810:CDS
CTTAAGAGAAGGAAGAGATG+TGG 0.542676 3_2:+203953 None:intergenic
AGGATGCATGGGAAGTGAAA+AGG 0.545731 3_2:-204213 Msa0389810:CDS
TGAATGAACATTACAAGCAA+TGG 0.550335 3_2:+203774 None:intergenic
AAGGACTAGATGCTTCGGAT+TGG 0.550420 3_2:+204291 None:intergenic
GAAATTTGGTACATCCATGT+TGG 0.556305 3_2:+203917 None:intergenic
TGTCATCAGCATCCTGACCA+TGG 0.563700 3_2:+203991 None:intergenic
CTCTTTGAACATACTCCCAA+CGG 0.567570 3_2:+204037 None:intergenic
CTATCTTGCTCCATAACCGC+CGG 0.572297 3_2:+204596 None:intergenic
TGTGGCTTGGCAACTATCAG+AGG 0.572775 3_2:-204108 Msa0389810:CDS
AGACGTGCCTTATTGGCTTG+CGG 0.572930 3_2:+204713 None:intergenic
ATGCCACTTTCCTCTTGGAG+TGG 0.573912 3_2:+204754 None:intergenic
AAAGGTGAAACTGTGGATGA+TGG 0.574054 3_2:-204236 Msa0389810:CDS
AAAGATGTTTCTAGCAGCCA+TGG 0.580571 3_2:-204008 Msa0389810:CDS
TGTGGATGATGGAGGATGCA+TGG 0.587950 3_2:-204225 Msa0389810:CDS
CAAGCTCAACCAATTGAGAG+TGG 0.595449 3_2:+203851 None:intergenic
TTCCCACTCCAAGAGGAAAG+TGG 0.599596 3_2:-204757 Msa0389810:five_prime_UTR
TCTAAAGAAAGATTTCTCTC+CGG 0.599830 3_2:-204615 Msa0389810:five_prime_UTR
ATATCTGGAATCTTAAGAGA+AGG 0.599963 3_2:+203942 None:intergenic
GTGGATGATGGAGGATGCAT+GGG 0.603480 3_2:-204224 Msa0389810:CDS
CGGTTATGGAGCAAGATAGG+AGG 0.604157 3_2:-204592 Msa0389810:exon
ATCTAGTCCTTCAAAGCAGG+TGG 0.612263 3_2:-204279 Msa0389810:CDS
AAAGAAAGATTTCTCTCCGG+CGG 0.617911 3_2:-204612 Msa0389810:five_prime_UTR
GGATGTACCAAATTTCGGAA+AGG 0.619495 3_2:-203910 Msa0389810:CDS
GAAATCTTTAAGGTGTAGAG+TGG 0.619537 3_2:-203669 None:intergenic
CTTGTGATGAGAGTGAAGGA+TGG 0.629930 3_2:-204080 Msa0389810:CDS
AAGCACTTTCCCACTCCAAG+AGG 0.629931 3_2:-204764 Msa0389810:five_prime_UTR
AGCAATGATTGTCCTCACTG+TGG 0.630188 3_2:-204126 Msa0389810:CDS
GGTGAAACTGTGGATGATGG+AGG 0.632117 3_2:-204233 Msa0389810:CDS
CTGAGAGACAGAGAGTAGGT+GGG 0.637959 3_2:+204463 None:intergenic
TGTGTAATTGTGTCAAAAGG+TGG 0.653758 3_2:-203733 Msa0389810:three_prime_UTR
GATTCCAGATATGACCAACA+TGG 0.664463 3_2:-203931 Msa0389810:CDS
TCCCAACGGATCTAAATGGG+TGG 0.668953 3_2:+204051 None:intergenic
GAAAACAAAAGGTGAAACTG+TGG 0.678024 3_2:-204243 Msa0389810:CDS
GTACCTGAGAGACAGAGAGT+AGG 0.684915 3_2:+204459 None:intergenic
TTCACTTGTGATGAGAGTGA+AGG 0.685850 3_2:-204084 Msa0389810:CDS
CAGTTGGAAATGTCTAAAGG+AGG 0.689175 3_2:-204326 Msa0389810:CDS
ATAGTTGCCAAGCCACAGTG+AGG 0.743956 3_2:+204114 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTGAAAAGTTAATTA+AGG - chr3_2:204624-204643 Msa0389810:five_prime_UTR 10.0%
!! TATATTGAAAAGTTAATTAA+GGG - chr3_2:204625-204644 Msa0389810:five_prime_UTR 10.0%
!! TTATATTGAAAAGTTAATTA+AGG - chr3_2:204624-204643 Msa0389810:five_prime_UTR 10.0%
!! TATATTGAAAAGTTAATTAA+GGG - chr3_2:204625-204644 Msa0389810:five_prime_UTR 10.0%
!!! AAATTTTCATTTTCTTTAAG+TGG - chr3_2:204566-204585 Msa0389810:CDS 15.0%
!!! AAATTTTCATTTTCTTTAAG+TGG - chr3_2:204566-204585 Msa0389810:CDS 15.0%
!!! TATTTTATTGGATAATCGAA+AGG + chr3_2:203781-203800 None:intergenic 20.0%
!! CAATAAGTATGAAATCTTTA+AGG - chr3_2:204769-204788 Msa0389810:five_prime_UTR 20.0%
!!! TATTTTATTGGATAATCGAA+AGG + chr3_2:203781-203800 None:intergenic 20.0%
!! CAATAAGTATGAAATCTTTA+AGG - chr3_2:204769-204788 Msa0389810:five_prime_UTR 20.0%
!! CAATAAAATAGAGCTTTTAG+CGG - chr3_2:203791-203810 Msa0389810:three_prime_UTR 25.0%
!!! GAATATGTTTTTGAATTGCT+TGG + chr3_2:203896-203915 None:intergenic 25.0%
!! CAATTTGATTTATTAGCAGT+TGG - chr3_2:204106-204125 Msa0389810:CDS 25.0%
!! CAATAAAATAGAGCTTTTAG+CGG - chr3_2:203791-203810 Msa0389810:three_prime_UTR 25.0%
!!! GAATATGTTTTTGAATTGCT+TGG + chr3_2:203896-203915 None:intergenic 25.0%
!! CAATTTGATTTATTAGCAGT+TGG - chr3_2:204106-204125 Msa0389810:CDS 25.0%
! CGCTAAAAGCTCTATTTTAT+TGG + chr3_2:203793-203812 None:intergenic 30.0%
TCTAAAGAAAGATTTCTCTC+CGG - chr3_2:203833-203852 Msa0389810:three_prime_UTR 30.0%
TCTGCAATTGAGAAAACAAA+AGG - chr3_2:204194-204213 Msa0389810:CDS 30.0%
GATAATCAAAGAGCTGAAAA+AGG - chr3_2:204262-204281 Msa0389810:CDS 30.0%
! ATATCTGGAATCTTAAGAGA+AGG + chr3_2:204509-204528 None:intergenic 30.0%
AACATGGATGTACCAAATTT+CGG - chr3_2:204533-204552 Msa0389810:CDS 30.0%
TTTCATTCCTTTCCGAAATT+TGG + chr3_2:204548-204567 None:intergenic 30.0%
TGAATGAACATTACAAGCAA+TGG + chr3_2:204677-204696 None:intergenic 30.0%
TTCTGTGTAATTGTGTCAAA+AGG - chr3_2:204712-204731 Msa0389810:five_prime_UTR 30.0%
! CGCTAAAAGCTCTATTTTAT+TGG + chr3_2:203793-203812 None:intergenic 30.0%
TCTAAAGAAAGATTTCTCTC+CGG - chr3_2:203833-203852 Msa0389810:three_prime_UTR 30.0%
TCTGCAATTGAGAAAACAAA+AGG - chr3_2:204194-204213 Msa0389810:CDS 30.0%
GATAATCAAAGAGCTGAAAA+AGG - chr3_2:204262-204281 Msa0389810:CDS 30.0%
! ATATCTGGAATCTTAAGAGA+AGG + chr3_2:204509-204528 None:intergenic 30.0%
AACATGGATGTACCAAATTT+CGG - chr3_2:204533-204552 Msa0389810:CDS 30.0%
TTTCATTCCTTTCCGAAATT+TGG + chr3_2:204548-204567 None:intergenic 30.0%
TGAATGAACATTACAAGCAA+TGG + chr3_2:204677-204696 None:intergenic 30.0%
TTCTGTGTAATTGTGTCAAA+AGG - chr3_2:204712-204731 Msa0389810:five_prime_UTR 30.0%
! TAAAATAGAGCTTTTAGCGG+TGG - chr3_2:203794-203813 Msa0389810:three_prime_UTR 35.0%
! AAAATAGAGCTTTTAGCGGT+GGG - chr3_2:203795-203814 Msa0389810:three_prime_UTR 35.0%
ATTCAGTTTCGTGGTCTTTA+AGG + chr3_2:203950-203969 None:intergenic 35.0%
!! CTTTTTGGTATTCAGTTTCG+TGG + chr3_2:203959-203978 None:intergenic 35.0%
TAGCAGTTGGAAATGTCTAA+AGG - chr3_2:204119-204138 Msa0389810:CDS 35.0%
GAAAACAAAAGGTGAAACTG+TGG - chr3_2:204205-204224 Msa0389810:CDS 35.0%
GAAATTTGGTACATCCATGT+TGG + chr3_2:204534-204553 None:intergenic 35.0%
TGTGTAATTGTGTCAAAAGG+TGG - chr3_2:204715-204734 Msa0389810:five_prime_UTR 35.0%
!! GAAATCTTTAAGGTGTAGAG+TGG - chr3_2:204779-204798 Msa0389810:five_prime_UTR 35.0%
! TAAAATAGAGCTTTTAGCGG+TGG - chr3_2:203794-203813 Msa0389810:three_prime_UTR 35.0%
! AAAATAGAGCTTTTAGCGGT+GGG - chr3_2:203795-203814 Msa0389810:three_prime_UTR 35.0%
ATTCAGTTTCGTGGTCTTTA+AGG + chr3_2:203950-203969 None:intergenic 35.0%
!! CTTTTTGGTATTCAGTTTCG+TGG + chr3_2:203959-203978 None:intergenic 35.0%
TAGCAGTTGGAAATGTCTAA+AGG - chr3_2:204119-204138 Msa0389810:CDS 35.0%
GAAAACAAAAGGTGAAACTG+TGG - chr3_2:204205-204224 Msa0389810:CDS 35.0%
GAAATTTGGTACATCCATGT+TGG + chr3_2:204534-204553 None:intergenic 35.0%
TGTGTAATTGTGTCAAAAGG+TGG - chr3_2:204715-204734 Msa0389810:five_prime_UTR 35.0%
!! ACTATATGCCACTTTCCTCT+TGG + chr3_2:203702-203721 None:intergenic 40.0%
AAAGAAAGATTTCTCTCCGG+CGG - chr3_2:203836-203855 Msa0389810:three_prime_UTR 40.0%
CAGTTGGAAATGTCTAAAGG+AGG - chr3_2:204122-204141 Msa0389810:CDS 40.0%
! CTTTGAAGGACTAGATGCTT+CGG + chr3_2:204165-204184 None:intergenic 40.0%
AAAGGTGAAACTGTGGATGA+TGG - chr3_2:204212-204231 Msa0389810:CDS 40.0%
TTCACTTGTGATGAGAGTGA+AGG - chr3_2:204364-204383 Msa0389810:intron 40.0%
TACTCCCAACGGATCTAAAT+GGG + chr3_2:204403-204422 None:intergenic 40.0%
ATACTCCCAACGGATCTAAA+TGG + chr3_2:204404-204423 None:intergenic 40.0%
CTCTTTGAACATACTCCCAA+CGG + chr3_2:204414-204433 None:intergenic 40.0%
!! AAAGATGTTTCTAGCAGCCA+TGG - chr3_2:204440-204459 Msa0389810:intron 40.0%
CTTAAGAGAAGGAAGAGATG+TGG + chr3_2:204498-204517 None:intergenic 40.0%
GATTCCAGATATGACCAACA+TGG - chr3_2:204517-204536 Msa0389810:CDS 40.0%
ACATCCATGTTGGTCATATC+TGG + chr3_2:204524-204543 None:intergenic 40.0%
GGATGTACCAAATTTCGGAA+AGG - chr3_2:204538-204557 Msa0389810:CDS 40.0%
GTTGATCATCCACTCTCAAT+TGG - chr3_2:204588-204607 Msa0389810:CDS 40.0%
! GTGGTAGTTACCTTTTCTAG+TGG - chr3_2:204734-204753 Msa0389810:five_prime_UTR 40.0%
TACGCAAATGCCACTAGAAA+AGG + chr3_2:204747-204766 None:intergenic 40.0%
!! ACTATATGCCACTTTCCTCT+TGG + chr3_2:203702-203721 None:intergenic 40.0%
AAAGAAAGATTTCTCTCCGG+CGG - chr3_2:203836-203855 Msa0389810:three_prime_UTR 40.0%
CAGTTGGAAATGTCTAAAGG+AGG - chr3_2:204122-204141 Msa0389810:CDS 40.0%
! CTTTGAAGGACTAGATGCTT+CGG + chr3_2:204165-204184 None:intergenic 40.0%
AAAGGTGAAACTGTGGATGA+TGG - chr3_2:204212-204231 Msa0389810:CDS 40.0%
TTCACTTGTGATGAGAGTGA+AGG - chr3_2:204364-204383 Msa0389810:intron 40.0%
TACTCCCAACGGATCTAAAT+GGG + chr3_2:204403-204422 None:intergenic 40.0%
ATACTCCCAACGGATCTAAA+TGG + chr3_2:204404-204423 None:intergenic 40.0%
CTCTTTGAACATACTCCCAA+CGG + chr3_2:204414-204433 None:intergenic 40.0%
!! AAAGATGTTTCTAGCAGCCA+TGG - chr3_2:204440-204459 Msa0389810:intron 40.0%
CTTAAGAGAAGGAAGAGATG+TGG + chr3_2:204498-204517 None:intergenic 40.0%
GATTCCAGATATGACCAACA+TGG - chr3_2:204517-204536 Msa0389810:CDS 40.0%
ACATCCATGTTGGTCATATC+TGG + chr3_2:204524-204543 None:intergenic 40.0%
GGATGTACCAAATTTCGGAA+AGG - chr3_2:204538-204557 Msa0389810:CDS 40.0%
GTTGATCATCCACTCTCAAT+TGG - chr3_2:204588-204607 Msa0389810:CDS 40.0%
! GTGGTAGTTACCTTTTCTAG+TGG - chr3_2:204734-204753 Msa0389810:five_prime_UTR 40.0%
TACGCAAATGCCACTAGAAA+AGG + chr3_2:204747-204766 None:intergenic 40.0%
CAACAAACCGCAAGCCAATA+AGG - chr3_2:203728-203747 Msa0389810:three_prime_UTR 45.0%
ACACAAGAGACGTGCCTTAT+TGG + chr3_2:203745-203764 None:intergenic 45.0%
AAGGACTAGATGCTTCGGAT+TGG + chr3_2:204160-204179 None:intergenic 45.0%
AGCATCTAGTCCTTCAAAGC+AGG - chr3_2:204166-204185 Msa0389810:CDS 45.0%
ATCTAGTCCTTCAAAGCAGG+TGG - chr3_2:204169-204188 Msa0389810:CDS 45.0%
AGGATGCATGGGAAGTGAAA+AGG - chr3_2:204235-204254 Msa0389810:CDS 45.0%
AGCAATGATTGTCCTCACTG+TGG - chr3_2:204322-204341 Msa0389810:CDS 45.0%
CTTGTGATGAGAGTGAAGGA+TGG - chr3_2:204368-204387 Msa0389810:intron 45.0%
AACCACCCATTTAGATCCGT+TGG - chr3_2:204395-204414 Msa0389810:intron 45.0%
ACCACCCATTTAGATCCGTT+GGG - chr3_2:204396-204415 Msa0389810:intron 45.0%
CAAGCTCAACCAATTGAGAG+TGG + chr3_2:204600-204619 None:intergenic 45.0%
CAACAAACCGCAAGCCAATA+AGG - chr3_2:203728-203747 Msa0389810:three_prime_UTR 45.0%
ACACAAGAGACGTGCCTTAT+TGG + chr3_2:203745-203764 None:intergenic 45.0%
AAGGACTAGATGCTTCGGAT+TGG + chr3_2:204160-204179 None:intergenic 45.0%
AGCATCTAGTCCTTCAAAGC+AGG - chr3_2:204166-204185 Msa0389810:CDS 45.0%
ATCTAGTCCTTCAAAGCAGG+TGG - chr3_2:204169-204188 Msa0389810:CDS 45.0%
AGGATGCATGGGAAGTGAAA+AGG - chr3_2:204235-204254 Msa0389810:CDS 45.0%
AGCAATGATTGTCCTCACTG+TGG - chr3_2:204322-204341 Msa0389810:CDS 45.0%
CTTGTGATGAGAGTGAAGGA+TGG - chr3_2:204368-204387 Msa0389810:intron 45.0%
AACCACCCATTTAGATCCGT+TGG - chr3_2:204395-204414 Msa0389810:intron 45.0%
ACCACCCATTTAGATCCGTT+GGG - chr3_2:204396-204415 Msa0389810:intron 45.0%
CAAGCTCAACCAATTGAGAG+TGG + chr3_2:204600-204619 None:intergenic 45.0%
!! TGGAGTGGGAAAGTGCTTTG+TGG + chr3_2:203682-203701 None:intergenic 50.0%
AAGCACTTTCCCACTCCAAG+AGG - chr3_2:203684-203703 Msa0389810:three_prime_UTR 50.0%
TTCCCACTCCAAGAGGAAAG+TGG - chr3_2:203691-203710 Msa0389810:three_prime_UTR 50.0%
!! TGCCACTTTCCTCTTGGAGT+GGG + chr3_2:203696-203715 None:intergenic 50.0%
!! ATGCCACTTTCCTCTTGGAG+TGG + chr3_2:203697-203716 None:intergenic 50.0%
!! AGACGTGCCTTATTGGCTTG+CGG + chr3_2:203738-203757 None:intergenic 50.0%
! TAGAGCTTTTAGCGGTGGGT+CGG - chr3_2:203799-203818 Msa0389810:three_prime_UTR 50.0%
AGATTTCTCTCCGGCGGTTA+TGG - chr3_2:203842-203861 Msa0389810:three_prime_UTR 50.0%
CTATCTTGCTCCATAACCGC+CGG + chr3_2:203855-203874 None:intergenic 50.0%
CGGTTATGGAGCAAGATAGG+AGG - chr3_2:203856-203875 Msa0389810:three_prime_UTR 50.0%
! GTAGGTGGGAGAGAGCTTTT+TGG + chr3_2:203974-203993 None:intergenic 50.0%
CTGAGAGACAGAGAGTAGGT+GGG + chr3_2:203988-204007 None:intergenic 50.0%
GTACCTGAGAGACAGAGAGT+AGG + chr3_2:203992-204011 None:intergenic 50.0%
! GGTGAAACTGTGGATGATGG+AGG - chr3_2:204215-204234 Msa0389810:CDS 50.0%
!! TGTGGATGATGGAGGATGCA+TGG - chr3_2:204223-204242 Msa0389810:CDS 50.0%
!! GTGGATGATGGAGGATGCAT+GGG - chr3_2:204224-204243 Msa0389810:CDS 50.0%
TGATTGTCCTCACTGTGGCT+TGG - chr3_2:204327-204346 Msa0389810:CDS 50.0%
ATAGTTGCCAAGCCACAGTG+AGG + chr3_2:204337-204356 None:intergenic 50.0%
! TGTGGCTTGGCAACTATCAG+AGG - chr3_2:204340-204359 Msa0389810:intron 50.0%
TCCCAACGGATCTAAATGGG+TGG + chr3_2:204400-204419 None:intergenic 50.0%
!! TGTTTCTAGCAGCCATGGTC+AGG - chr3_2:204445-204464 Msa0389810:intron 50.0%
TGTCATCAGCATCCTGACCA+TGG + chr3_2:204460-204479 None:intergenic 50.0%
!! TGGAGTGGGAAAGTGCTTTG+TGG + chr3_2:203682-203701 None:intergenic 50.0%
AAGCACTTTCCCACTCCAAG+AGG - chr3_2:203684-203703 Msa0389810:three_prime_UTR 50.0%
TTCCCACTCCAAGAGGAAAG+TGG - chr3_2:203691-203710 Msa0389810:three_prime_UTR 50.0%
!! TGCCACTTTCCTCTTGGAGT+GGG + chr3_2:203696-203715 None:intergenic 50.0%
!! ATGCCACTTTCCTCTTGGAG+TGG + chr3_2:203697-203716 None:intergenic 50.0%
!! AGACGTGCCTTATTGGCTTG+CGG + chr3_2:203738-203757 None:intergenic 50.0%
! TAGAGCTTTTAGCGGTGGGT+CGG - chr3_2:203799-203818 Msa0389810:three_prime_UTR 50.0%
AGATTTCTCTCCGGCGGTTA+TGG - chr3_2:203842-203861 Msa0389810:three_prime_UTR 50.0%
CTATCTTGCTCCATAACCGC+CGG + chr3_2:203855-203874 None:intergenic 50.0%
CGGTTATGGAGCAAGATAGG+AGG - chr3_2:203856-203875 Msa0389810:three_prime_UTR 50.0%
! GTAGGTGGGAGAGAGCTTTT+TGG + chr3_2:203974-203993 None:intergenic 50.0%
CTGAGAGACAGAGAGTAGGT+GGG + chr3_2:203988-204007 None:intergenic 50.0%
GTACCTGAGAGACAGAGAGT+AGG + chr3_2:203992-204011 None:intergenic 50.0%
! GGTGAAACTGTGGATGATGG+AGG - chr3_2:204215-204234 Msa0389810:CDS 50.0%
!! TGTGGATGATGGAGGATGCA+TGG - chr3_2:204223-204242 Msa0389810:CDS 50.0%
!! GTGGATGATGGAGGATGCAT+GGG - chr3_2:204224-204243 Msa0389810:CDS 50.0%
TGATTGTCCTCACTGTGGCT+TGG - chr3_2:204327-204346 Msa0389810:CDS 50.0%
ATAGTTGCCAAGCCACAGTG+AGG + chr3_2:204337-204356 None:intergenic 50.0%
! TGTGGCTTGGCAACTATCAG+AGG - chr3_2:204340-204359 Msa0389810:intron 50.0%
TCCCAACGGATCTAAATGGG+TGG + chr3_2:204400-204419 None:intergenic 50.0%
!! TGTTTCTAGCAGCCATGGTC+AGG - chr3_2:204445-204464 Msa0389810:intron 50.0%
TGTCATCAGCATCCTGACCA+TGG + chr3_2:204460-204479 None:intergenic 50.0%
CGGCGGTTATGGAGCAAGAT+AGG - chr3_2:203853-203872 Msa0389810:three_prime_UTR 55.0%
CCTGAGAGACAGAGAGTAGG+TGG + chr3_2:203989-204008 None:intergenic 55.0%
CCACCTACTCTCTGTCTCTC+AGG - chr3_2:203986-204005 Msa0389810:CDS 55.0%
GCAGAAGCCACCTGCTTTGA+AGG + chr3_2:204179-204198 None:intergenic 55.0%
CGGCGGTTATGGAGCAAGAT+AGG - chr3_2:203853-203872 Msa0389810:three_prime_UTR 55.0%
CCTGAGAGACAGAGAGTAGG+TGG + chr3_2:203989-204008 None:intergenic 55.0%
CCACCTACTCTCTGTCTCTC+AGG - chr3_2:203986-204005 Msa0389810:CDS 55.0%
GCAGAAGCCACCTGCTTTGA+AGG + chr3_2:204179-204198 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 203671 204799 203671 ID=Msa0389810;Name=Msa0389810
chr3_2 mRNA 203671 204799 203671 ID=Msa0389810-mRNA-1;Parent=Msa0389810;Name=Msa0389810-mRNA-1;_AED=0.05;_eAED=0.05;_QI=190|1|1|1|1|1|2|234|196
chr3_2 exon 203671 204348 203671 ID=Msa0389810-mRNA-1:exon:24;Parent=Msa0389810-mRNA-1
chr3_2 exon 204463 204799 204463 ID=Msa0389810-mRNA-1:exon:23;Parent=Msa0389810-mRNA-1
chr3_2 five_prime_UTR 204610 204799 204610 ID=Msa0389810-mRNA-1:five_prime_utr;Parent=Msa0389810-mRNA-1
chr3_2 CDS 204463 204609 204463 ID=Msa0389810-mRNA-1:cds;Parent=Msa0389810-mRNA-1
chr3_2 CDS 203905 204348 203905 ID=Msa0389810-mRNA-1:cds;Parent=Msa0389810-mRNA-1
chr3_2 three_prime_UTR 203671 203904 203671 ID=Msa0389810-mRNA-1:three_prime_utr;Parent=Msa0389810-mRNA-1
Gene Sequence

>Msa0389810

ATGGAGCAAGATAGGAGGCTTGAACTCATCGACCAAGCAATTCAAAAACATATTCATAACAAAAGTGACAATAATAATAATCATAACCTTAAAGACCACGAAACTGAATACCAAAAAGCTCTCTCCCACCTACTCTCTGTCTCTCAGCAGTTGGAAATGTCTAAAGGAGGTGAAACAGTTAACCAATCCGAAGCATCTAGTCCTTCAAAGCAGGTGGCTTCTGCAATTGAGAAAACAAAAGGTGAAACTGTGGATGATGGAGGATGCATGGGAAGTGAAAAGGATGAGATAATCAAAGAGCTGAAAAAGGTGAAGAAGCAGAATTTTGTGACTCATTGTCTTCTTTCAGCAATGATTGTCCTCACTGTGGCTTGGCAACTATCAGAGGTTTCACTTGTGATGAGAGTGAAGGATGGAATAAACCACCCATTTAGATCCGTTGGGAGTATGTTCAAAGAGATAGTGAAAGATGTTTCTAGCAGCCATGGTCAGGATGCTGATGACAAAGAAAACAATGAATCCACATCTCTTCCTTCTCTTAAGATTCCAGATATGACCAACATGGATGTACCAAATTTCGGAAAGGAATGA

Protein sequence

>Msa0389810

MEQDRRLELIDQAIQKHIHNKSDNNNNHNLKDHETEYQKALSHLLSVSQQLEMSKGGETVNQSEASSPSKQVASAIEKTKGETVDDGGCMGSEKDEIIKELKKVKKQNFVTHCLLSAMIVLTVAWQLSEVSLVMRVKDGINHPFRSVGSMFKEIVKDVSSSHGQDADDKENNESTSLPSLKIPDMTNMDVPNFGKE*