AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0982270


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0982270 MtrunA17_Chr3g0122361 84.694 196 18 3 1 195 1 185 1.36e-114 323
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0982270 AT1G27300.1 34.146 205 100 7 1 185 1 190 4.67e-21 86.7

Find 73 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCATTCCTTTCCGAAATT+TGG 0.127733 6_4:+21950919 None:intergenic
TTATATTGAAAAGTTAATTA+AGG 0.217773 6_4:-21950840 Msa0982270:three_prime_UTR
ACACAAGAGACGTGCCTTAT+TGG 0.220983 6_4:+21951722 None:intergenic
CAATAAGTATGAAATCTTTA+AGG 0.247081 6_4:-21950695 Msa0982270:three_prime_UTR
ATTCAGTTTCGTGGTCTTTA+AGG 0.248448 6_4:+21951517 None:intergenic
ATACTCCCAACGGATCTAAA+TGG 0.272675 6_4:+21951063 None:intergenic
AGATTTCTCTCCGGCGGTTA+TGG 0.300517 6_4:-21951622 Msa0982270:exon
ACATCCATGTTGGTCATATC+TGG 0.303699 6_4:+21950943 None:intergenic
GCAGAAGCCACCTGCTTTGA+AGG 0.325878 6_4:+21951288 None:intergenic
TATATTGAAAAGTTAATTAA+GGG 0.344507 6_4:-21950839 Msa0982270:three_prime_UTR
AACATGGATGTACCAAATTT+CGG 0.350139 6_4:-21950931 Msa0982270:CDS
CAACAAACCGCAAGCCAATA+AGG 0.352087 6_4:-21951736 Msa0982270:five_prime_UTR
GATAATCAAAGAGCTGAAAA+AGG 0.382164 6_4:-21951202 Msa0982270:CDS
TTGACACAATTACACAGAAA+TGG 0.390159 6_4:+21950756 None:intergenic
TGGAGTGGGAAAGTGCTTTG+TGG 0.411080 6_4:+21951785 None:intergenic
CGGCGGTTATGGAGCAAGAT+AGG 0.419703 6_4:-21951611 Msa0982270:exon
GGCGGATCTATGTGTATGTA+TGG 0.424621 6_4:-21950637 Msa0982270:three_prime_UTR
ACTATATGCCACTTTCCTCT+TGG 0.437773 6_4:+21951765 None:intergenic
CCACCTACTCTCTGTCTCTC+AGG 0.446309 6_4:-21951478 Msa0982270:intron
TGTTTCTAGCAGCCATGGTC+AGG 0.446396 6_4:-21951019 Msa0982270:CDS
TACGCAAATGCCACTAGAAA+AGG 0.452114 6_4:+21950720 None:intergenic
GTTGATCATCCACTCTCAAT+TGG 0.453754 6_4:-21950876 Msa0982270:three_prime_UTR
CTTTGAAGGACTAGATGCTT+CGG 0.454664 6_4:+21951302 None:intergenic
TTAACAAATAAACACATTTG+TGG 0.471559 6_4:+21950558 None:intergenic
TACTCCCAACGGATCTAAAT+GGG 0.474977 6_4:+21951064 None:intergenic
AACCACCCATTTAGATCCGT+TGG 0.484895 6_4:-21951069 Msa0982270:CDS
TTCTGTGTAATTGTGTCAAA+AGG 0.489385 6_4:-21950752 Msa0982270:three_prime_UTR
TAGCAGTTGGAAATGTCTAA+AGG 0.502031 6_4:-21951345 Msa0982270:CDS
ACCACCCATTTAGATCCGTT+GGG 0.504389 6_4:-21951068 Msa0982270:CDS
TCTGCAATTGAGAAAACAAA+AGG 0.510878 6_4:-21951270 Msa0982270:CDS
CCTGAGAGACAGAGAGTAGG+TGG 0.533620 6_4:+21951478 None:intergenic
AGCATCTAGTCCTTCAAAGC+AGG 0.533942 6_4:-21951298 Msa0982270:CDS
TGCCACTTTCCTCTTGGAGT+GGG 0.534992 6_4:+21951771 None:intergenic
TGATTGTCCTCACTGTGGCT+TGG 0.535081 6_4:-21951137 Msa0982270:CDS
CTTAAGAGAAGGAAGAGATG+TGG 0.542676 6_4:+21950969 None:intergenic
AGGATGCATGGGAAGTGAAA+AGG 0.545731 6_4:-21951229 Msa0982270:CDS
TGAATGAACATTACAAGCAA+TGG 0.550335 6_4:+21950790 None:intergenic
AAGGACTAGATGCTTCGGAT+TGG 0.550420 6_4:+21951307 None:intergenic
GAAATTTGGTACATCCATGT+TGG 0.556305 6_4:+21950933 None:intergenic
TGTCATCAGCATCCTGACCA+TGG 0.563700 6_4:+21951007 None:intergenic
CTCTTTGAACATACTCCCAA+CGG 0.567570 6_4:+21951053 None:intergenic
CTATCTTGCTCCATAACCGC+CGG 0.572297 6_4:+21951612 None:intergenic
TGTGGCTTGGCAACTATCAG+AGG 0.572775 6_4:-21951124 Msa0982270:CDS
AGACGTGCCTTATTGGCTTG+CGG 0.572930 6_4:+21951729 None:intergenic
ATGCCACTTTCCTCTTGGAG+TGG 0.573912 6_4:+21951770 None:intergenic
AAAGGTGAAACTGTGGATGA+TGG 0.574054 6_4:-21951252 Msa0982270:CDS
AAAGATGTTTCTAGCAGCCA+TGG 0.580571 6_4:-21951024 Msa0982270:CDS
TGTGGATGATGGAGGATGCA+TGG 0.587950 6_4:-21951241 Msa0982270:CDS
CAAGCTCAACCAATTGAGAG+TGG 0.595449 6_4:+21950867 None:intergenic
TTCCCACTCCAAGAGGAAAG+TGG 0.599596 6_4:-21951773 Msa0982270:five_prime_UTR
TCTAAAGAAAGATTTCTCTC+CGG 0.599830 6_4:-21951631 Msa0982270:five_prime_UTR
ATATCTGGAATCTTAAGAGA+AGG 0.599963 6_4:+21950958 None:intergenic
GTGGATGATGGAGGATGCAT+GGG 0.603480 6_4:-21951240 Msa0982270:CDS
CGGTTATGGAGCAAGATAGG+AGG 0.604157 6_4:-21951608 Msa0982270:exon
AGGAGAGCCAGAAGGTAGAG+TGG 0.606334 6_4:-21950658 Msa0982270:intron
ATCTAGTCCTTCAAAGCAGG+TGG 0.612263 6_4:-21951295 Msa0982270:CDS
AAAGAAAGATTTCTCTCCGG+CGG 0.617911 6_4:-21951628 Msa0982270:five_prime_UTR
GGATGTACCAAATTTCGGAA+AGG 0.619495 6_4:-21950926 Msa0982270:CDS
CTTGTGATGAGAGTGAAGGA+TGG 0.629930 6_4:-21951096 Msa0982270:CDS
AAGCACTTTCCCACTCCAAG+AGG 0.629931 6_4:-21951780 Msa0982270:five_prime_UTR
AGCAATGATTGTCCTCACTG+TGG 0.630188 6_4:-21951142 Msa0982270:CDS
GGTGAAACTGTGGATGATGG+AGG 0.632117 6_4:-21951249 Msa0982270:CDS
CTGAGAGACAGAGAGTAGGT+GGG 0.637959 6_4:+21951479 None:intergenic
TGTGTAATTGTGTCAAAAGG+TGG 0.653758 6_4:-21950749 Msa0982270:three_prime_UTR
GATTCCAGATATGACCAACA+TGG 0.664463 6_4:-21950947 Msa0982270:CDS
GCGGATCTATGTGTATGTAT+GGG 0.668444 6_4:-21950636 Msa0982270:three_prime_UTR
TCCCAACGGATCTAAATGGG+TGG 0.668953 6_4:+21951067 None:intergenic
AGAGCCAGAAGGTAGAGTGG+CGG 0.672315 6_4:-21950655 Msa0982270:intron
GAAAACAAAAGGTGAAACTG+TGG 0.678024 6_4:-21951259 Msa0982270:CDS
GTACCTGAGAGACAGAGAGT+AGG 0.684915 6_4:+21951475 None:intergenic
TTCACTTGTGATGAGAGTGA+AGG 0.685850 6_4:-21951100 Msa0982270:CDS
CAGTTGGAAATGTCTAAAGG+AGG 0.689175 6_4:-21951342 Msa0982270:CDS
ATAGTTGCCAAGCCACAGTG+AGG 0.743956 6_4:+21951130 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTGAAAAGTTAATTA+AGG - chr6_4:21951476-21951495 Msa0982270:intron 10.0%
!! TATATTGAAAAGTTAATTAA+GGG - chr6_4:21951477-21951496 Msa0982270:intron 10.0%
!! TTATATTGAAAAGTTAATTA+AGG - chr6_4:21951476-21951495 Msa0982270:intron 10.0%
!! TATATTGAAAAGTTAATTAA+GGG - chr6_4:21951477-21951496 Msa0982270:intron 10.0%
!!! AAATTTTCATTTTCTTTAAG+TGG - chr6_4:21951418-21951437 Msa0982270:intron 15.0%
!!! CTTAAAACAATAATATTTTC+TGG + chr6_4:21951710-21951729 None:intergenic 15.0%
!!! AAATTTTCATTTTCTTTAAG+TGG - chr6_4:21951418-21951437 Msa0982270:intron 15.0%
!!! CTTAAAACAATAATATTTTC+TGG + chr6_4:21951710-21951729 None:intergenic 15.0%
!!! TATTTTATTGGATAATCGAA+AGG + chr6_4:21950633-21950652 None:intergenic 20.0%
!! CAATAAGTATGAAATCTTTA+AGG - chr6_4:21951621-21951640 Msa0982270:exon 20.0%
!! TTAACAAATAAACACATTTG+TGG + chr6_4:21951761-21951780 None:intergenic 20.0%
!!! TATTTTATTGGATAATCGAA+AGG + chr6_4:21950633-21950652 None:intergenic 20.0%
!! CAATAAGTATGAAATCTTTA+AGG - chr6_4:21951621-21951640 Msa0982270:exon 20.0%
!! TTAACAAATAAACACATTTG+TGG + chr6_4:21951761-21951780 None:intergenic 20.0%
!! CAATAAAATAGAGCTTTTAG+CGG - chr6_4:21950643-21950662 Msa0982270:three_prime_UTR 25.0%
!!! GAATATGTTTTTGAATTGCT+TGG + chr6_4:21950748-21950767 None:intergenic 25.0%
!! CAATTTGATTTATTAGCAGT+TGG - chr6_4:21950958-21950977 Msa0982270:CDS 25.0%
!! CAATAAAATAGAGCTTTTAG+CGG - chr6_4:21950643-21950662 Msa0982270:three_prime_UTR 25.0%
!!! GAATATGTTTTTGAATTGCT+TGG + chr6_4:21950748-21950767 None:intergenic 25.0%
!! CAATTTGATTTATTAGCAGT+TGG - chr6_4:21950958-21950977 Msa0982270:CDS 25.0%
! CGCTAAAAGCTCTATTTTAT+TGG + chr6_4:21950645-21950664 None:intergenic 30.0%
TCTAAAGAAAGATTTCTCTC+CGG - chr6_4:21950685-21950704 Msa0982270:intron 30.0%
TCTGCAATTGAGAAAACAAA+AGG - chr6_4:21951046-21951065 Msa0982270:CDS 30.0%
GATAATCAAAGAGCTGAAAA+AGG - chr6_4:21951114-21951133 Msa0982270:CDS 30.0%
! ATATCTGGAATCTTAAGAGA+AGG + chr6_4:21951361-21951380 None:intergenic 30.0%
AACATGGATGTACCAAATTT+CGG - chr6_4:21951385-21951404 Msa0982270:intron 30.0%
TTTCATTCCTTTCCGAAATT+TGG + chr6_4:21951400-21951419 None:intergenic 30.0%
TGAATGAACATTACAAGCAA+TGG + chr6_4:21951529-21951548 None:intergenic 30.0%
TTGACACAATTACACAGAAA+TGG + chr6_4:21951563-21951582 None:intergenic 30.0%
TTCTGTGTAATTGTGTCAAA+AGG - chr6_4:21951564-21951583 Msa0982270:CDS 30.0%
! CGCTAAAAGCTCTATTTTAT+TGG + chr6_4:21950645-21950664 None:intergenic 30.0%
TCTAAAGAAAGATTTCTCTC+CGG - chr6_4:21950685-21950704 Msa0982270:intron 30.0%
TCTGCAATTGAGAAAACAAA+AGG - chr6_4:21951046-21951065 Msa0982270:CDS 30.0%
GATAATCAAAGAGCTGAAAA+AGG - chr6_4:21951114-21951133 Msa0982270:CDS 30.0%
! ATATCTGGAATCTTAAGAGA+AGG + chr6_4:21951361-21951380 None:intergenic 30.0%
AACATGGATGTACCAAATTT+CGG - chr6_4:21951385-21951404 Msa0982270:intron 30.0%
TTTCATTCCTTTCCGAAATT+TGG + chr6_4:21951400-21951419 None:intergenic 30.0%
TGAATGAACATTACAAGCAA+TGG + chr6_4:21951529-21951548 None:intergenic 30.0%
TTGACACAATTACACAGAAA+TGG + chr6_4:21951563-21951582 None:intergenic 30.0%
TTCTGTGTAATTGTGTCAAA+AGG - chr6_4:21951564-21951583 Msa0982270:CDS 30.0%
! TAAAATAGAGCTTTTAGCGG+TGG - chr6_4:21950646-21950665 Msa0982270:three_prime_UTR 35.0%
! AAAATAGAGCTTTTAGCGGT+GGG - chr6_4:21950647-21950666 Msa0982270:three_prime_UTR 35.0%
ATTCAGTTTCGTGGTCTTTA+AGG + chr6_4:21950802-21950821 None:intergenic 35.0%
!! CTTTTTGGTATTCAGTTTCG+TGG + chr6_4:21950811-21950830 None:intergenic 35.0%
TAGCAGTTGGAAATGTCTAA+AGG - chr6_4:21950971-21950990 Msa0982270:CDS 35.0%
GAAAACAAAAGGTGAAACTG+TGG - chr6_4:21951057-21951076 Msa0982270:CDS 35.0%
GAAATTTGGTACATCCATGT+TGG + chr6_4:21951386-21951405 None:intergenic 35.0%
TGTGTAATTGTGTCAAAAGG+TGG - chr6_4:21951567-21951586 Msa0982270:CDS 35.0%
AAGAAAGTCAAACGATATCC+AGG - chr6_4:21951795-21951814 Msa0982270:five_prime_UTR 35.0%
! TAAAATAGAGCTTTTAGCGG+TGG - chr6_4:21950646-21950665 Msa0982270:three_prime_UTR 35.0%
! AAAATAGAGCTTTTAGCGGT+GGG - chr6_4:21950647-21950666 Msa0982270:three_prime_UTR 35.0%
ATTCAGTTTCGTGGTCTTTA+AGG + chr6_4:21950802-21950821 None:intergenic 35.0%
!! CTTTTTGGTATTCAGTTTCG+TGG + chr6_4:21950811-21950830 None:intergenic 35.0%
TAGCAGTTGGAAATGTCTAA+AGG - chr6_4:21950971-21950990 Msa0982270:CDS 35.0%
GAAAACAAAAGGTGAAACTG+TGG - chr6_4:21951057-21951076 Msa0982270:CDS 35.0%
GAAATTTGGTACATCCATGT+TGG + chr6_4:21951386-21951405 None:intergenic 35.0%
TGTGTAATTGTGTCAAAAGG+TGG - chr6_4:21951567-21951586 Msa0982270:CDS 35.0%
!! ACTATATGCCACTTTCCTCT+TGG + chr6_4:21950554-21950573 None:intergenic 40.0%
AAAGAAAGATTTCTCTCCGG+CGG - chr6_4:21950688-21950707 Msa0982270:intron 40.0%
CAGTTGGAAATGTCTAAAGG+AGG - chr6_4:21950974-21950993 Msa0982270:CDS 40.0%
! CTTTGAAGGACTAGATGCTT+CGG + chr6_4:21951017-21951036 None:intergenic 40.0%
AAAGGTGAAACTGTGGATGA+TGG - chr6_4:21951064-21951083 Msa0982270:CDS 40.0%
TTCACTTGTGATGAGAGTGA+AGG - chr6_4:21951216-21951235 Msa0982270:CDS 40.0%
TACTCCCAACGGATCTAAAT+GGG + chr6_4:21951255-21951274 None:intergenic 40.0%
ATACTCCCAACGGATCTAAA+TGG + chr6_4:21951256-21951275 None:intergenic 40.0%
CTCTTTGAACATACTCCCAA+CGG + chr6_4:21951266-21951285 None:intergenic 40.0%
!! AAAGATGTTTCTAGCAGCCA+TGG - chr6_4:21951292-21951311 Msa0982270:CDS 40.0%
CTTAAGAGAAGGAAGAGATG+TGG + chr6_4:21951350-21951369 None:intergenic 40.0%
GATTCCAGATATGACCAACA+TGG - chr6_4:21951369-21951388 Msa0982270:intron 40.0%
ACATCCATGTTGGTCATATC+TGG + chr6_4:21951376-21951395 None:intergenic 40.0%
GGATGTACCAAATTTCGGAA+AGG - chr6_4:21951390-21951409 Msa0982270:intron 40.0%
GTTGATCATCCACTCTCAAT+TGG - chr6_4:21951440-21951459 Msa0982270:intron 40.0%
! GTGGTAGTTACCTTTTCTAG+TGG - chr6_4:21951586-21951605 Msa0982270:CDS 40.0%
TACGCAAATGCCACTAGAAA+AGG + chr6_4:21951599-21951618 None:intergenic 40.0%
TTAAGGTGTAGTGTTAGCAC+AGG - chr6_4:21951638-21951657 Msa0982270:five_prime_UTR 40.0%
GCGGATCTATGTGTATGTAT+GGG - chr6_4:21951680-21951699 Msa0982270:five_prime_UTR 40.0%
!! ACTATATGCCACTTTCCTCT+TGG + chr6_4:21950554-21950573 None:intergenic 40.0%
AAAGAAAGATTTCTCTCCGG+CGG - chr6_4:21950688-21950707 Msa0982270:intron 40.0%
CAGTTGGAAATGTCTAAAGG+AGG - chr6_4:21950974-21950993 Msa0982270:CDS 40.0%
! CTTTGAAGGACTAGATGCTT+CGG + chr6_4:21951017-21951036 None:intergenic 40.0%
AAAGGTGAAACTGTGGATGA+TGG - chr6_4:21951064-21951083 Msa0982270:CDS 40.0%
TTCACTTGTGATGAGAGTGA+AGG - chr6_4:21951216-21951235 Msa0982270:CDS 40.0%
TACTCCCAACGGATCTAAAT+GGG + chr6_4:21951255-21951274 None:intergenic 40.0%
ATACTCCCAACGGATCTAAA+TGG + chr6_4:21951256-21951275 None:intergenic 40.0%
CTCTTTGAACATACTCCCAA+CGG + chr6_4:21951266-21951285 None:intergenic 40.0%
!! AAAGATGTTTCTAGCAGCCA+TGG - chr6_4:21951292-21951311 Msa0982270:CDS 40.0%
CTTAAGAGAAGGAAGAGATG+TGG + chr6_4:21951350-21951369 None:intergenic 40.0%
GATTCCAGATATGACCAACA+TGG - chr6_4:21951369-21951388 Msa0982270:intron 40.0%
ACATCCATGTTGGTCATATC+TGG + chr6_4:21951376-21951395 None:intergenic 40.0%
GGATGTACCAAATTTCGGAA+AGG - chr6_4:21951390-21951409 Msa0982270:intron 40.0%
GTTGATCATCCACTCTCAAT+TGG - chr6_4:21951440-21951459 Msa0982270:intron 40.0%
! GTGGTAGTTACCTTTTCTAG+TGG - chr6_4:21951586-21951605 Msa0982270:CDS 40.0%
TACGCAAATGCCACTAGAAA+AGG + chr6_4:21951599-21951618 None:intergenic 40.0%
TTAAGGTGTAGTGTTAGCAC+AGG - chr6_4:21951638-21951657 Msa0982270:five_prime_UTR 40.0%
GCGGATCTATGTGTATGTAT+GGG - chr6_4:21951680-21951699 Msa0982270:five_prime_UTR 40.0%
CAACAAACCGCAAGCCAATA+AGG - chr6_4:21950580-21950599 Msa0982270:three_prime_UTR 45.0%
ACACAAGAGACGTGCCTTAT+TGG + chr6_4:21950597-21950616 None:intergenic 45.0%
AAGGACTAGATGCTTCGGAT+TGG + chr6_4:21951012-21951031 None:intergenic 45.0%
AGCATCTAGTCCTTCAAAGC+AGG - chr6_4:21951018-21951037 Msa0982270:CDS 45.0%
ATCTAGTCCTTCAAAGCAGG+TGG - chr6_4:21951021-21951040 Msa0982270:CDS 45.0%
AGGATGCATGGGAAGTGAAA+AGG - chr6_4:21951087-21951106 Msa0982270:CDS 45.0%
AGCAATGATTGTCCTCACTG+TGG - chr6_4:21951174-21951193 Msa0982270:CDS 45.0%
CTTGTGATGAGAGTGAAGGA+TGG - chr6_4:21951220-21951239 Msa0982270:CDS 45.0%
AACCACCCATTTAGATCCGT+TGG - chr6_4:21951247-21951266 Msa0982270:CDS 45.0%
ACCACCCATTTAGATCCGTT+GGG - chr6_4:21951248-21951267 Msa0982270:CDS 45.0%
CAAGCTCAACCAATTGAGAG+TGG + chr6_4:21951452-21951471 None:intergenic 45.0%
GGCGGATCTATGTGTATGTA+TGG - chr6_4:21951679-21951698 Msa0982270:five_prime_UTR 45.0%
CAACAAACCGCAAGCCAATA+AGG - chr6_4:21950580-21950599 Msa0982270:three_prime_UTR 45.0%
ACACAAGAGACGTGCCTTAT+TGG + chr6_4:21950597-21950616 None:intergenic 45.0%
AAGGACTAGATGCTTCGGAT+TGG + chr6_4:21951012-21951031 None:intergenic 45.0%
AGCATCTAGTCCTTCAAAGC+AGG - chr6_4:21951018-21951037 Msa0982270:CDS 45.0%
ATCTAGTCCTTCAAAGCAGG+TGG - chr6_4:21951021-21951040 Msa0982270:CDS 45.0%
AGGATGCATGGGAAGTGAAA+AGG - chr6_4:21951087-21951106 Msa0982270:CDS 45.0%
AGCAATGATTGTCCTCACTG+TGG - chr6_4:21951174-21951193 Msa0982270:CDS 45.0%
CTTGTGATGAGAGTGAAGGA+TGG - chr6_4:21951220-21951239 Msa0982270:CDS 45.0%
AACCACCCATTTAGATCCGT+TGG - chr6_4:21951247-21951266 Msa0982270:CDS 45.0%
ACCACCCATTTAGATCCGTT+GGG - chr6_4:21951248-21951267 Msa0982270:CDS 45.0%
CAAGCTCAACCAATTGAGAG+TGG + chr6_4:21951452-21951471 None:intergenic 45.0%
GGCGGATCTATGTGTATGTA+TGG - chr6_4:21951679-21951698 Msa0982270:five_prime_UTR 45.0%
!! TGGAGTGGGAAAGTGCTTTG+TGG + chr6_4:21950534-21950553 None:intergenic 50.0%
AAGCACTTTCCCACTCCAAG+AGG - chr6_4:21950536-21950555 Msa0982270:three_prime_UTR 50.0%
TTCCCACTCCAAGAGGAAAG+TGG - chr6_4:21950543-21950562 Msa0982270:three_prime_UTR 50.0%
!! TGCCACTTTCCTCTTGGAGT+GGG + chr6_4:21950548-21950567 None:intergenic 50.0%
!! ATGCCACTTTCCTCTTGGAG+TGG + chr6_4:21950549-21950568 None:intergenic 50.0%
!! AGACGTGCCTTATTGGCTTG+CGG + chr6_4:21950590-21950609 None:intergenic 50.0%
! TAGAGCTTTTAGCGGTGGGT+CGG - chr6_4:21950651-21950670 Msa0982270:intron 50.0%
AGATTTCTCTCCGGCGGTTA+TGG - chr6_4:21950694-21950713 Msa0982270:three_prime_UTR 50.0%
CTATCTTGCTCCATAACCGC+CGG + chr6_4:21950707-21950726 None:intergenic 50.0%
CGGTTATGGAGCAAGATAGG+AGG - chr6_4:21950708-21950727 Msa0982270:three_prime_UTR 50.0%
! GTAGGTGGGAGAGAGCTTTT+TGG + chr6_4:21950826-21950845 None:intergenic 50.0%
CTGAGAGACAGAGAGTAGGT+GGG + chr6_4:21950840-21950859 None:intergenic 50.0%
GTACCTGAGAGACAGAGAGT+AGG + chr6_4:21950844-21950863 None:intergenic 50.0%
! GGTGAAACTGTGGATGATGG+AGG - chr6_4:21951067-21951086 Msa0982270:CDS 50.0%
!! TGTGGATGATGGAGGATGCA+TGG - chr6_4:21951075-21951094 Msa0982270:CDS 50.0%
!! GTGGATGATGGAGGATGCAT+GGG - chr6_4:21951076-21951095 Msa0982270:CDS 50.0%
TGATTGTCCTCACTGTGGCT+TGG - chr6_4:21951179-21951198 Msa0982270:CDS 50.0%
ATAGTTGCCAAGCCACAGTG+AGG + chr6_4:21951189-21951208 None:intergenic 50.0%
! TGTGGCTTGGCAACTATCAG+AGG - chr6_4:21951192-21951211 Msa0982270:CDS 50.0%
TCCCAACGGATCTAAATGGG+TGG + chr6_4:21951252-21951271 None:intergenic 50.0%
!! TGTTTCTAGCAGCCATGGTC+AGG - chr6_4:21951297-21951316 Msa0982270:CDS 50.0%
TGTCATCAGCATCCTGACCA+TGG + chr6_4:21951312-21951331 None:intergenic 50.0%
AGTGCTTTGTGGACCTTTCC+TGG + chr6_4:21950523-21950542 None:intergenic 50.0%
!! TGGAGTGGGAAAGTGCTTTG+TGG + chr6_4:21950534-21950553 None:intergenic 50.0%
AAGCACTTTCCCACTCCAAG+AGG - chr6_4:21950536-21950555 Msa0982270:three_prime_UTR 50.0%
TTCCCACTCCAAGAGGAAAG+TGG - chr6_4:21950543-21950562 Msa0982270:three_prime_UTR 50.0%
!! TGCCACTTTCCTCTTGGAGT+GGG + chr6_4:21950548-21950567 None:intergenic 50.0%
!! ATGCCACTTTCCTCTTGGAG+TGG + chr6_4:21950549-21950568 None:intergenic 50.0%
!! AGACGTGCCTTATTGGCTTG+CGG + chr6_4:21950590-21950609 None:intergenic 50.0%
! TAGAGCTTTTAGCGGTGGGT+CGG - chr6_4:21950651-21950670 Msa0982270:intron 50.0%
AGATTTCTCTCCGGCGGTTA+TGG - chr6_4:21950694-21950713 Msa0982270:three_prime_UTR 50.0%
CTATCTTGCTCCATAACCGC+CGG + chr6_4:21950707-21950726 None:intergenic 50.0%
CGGTTATGGAGCAAGATAGG+AGG - chr6_4:21950708-21950727 Msa0982270:three_prime_UTR 50.0%
! GTAGGTGGGAGAGAGCTTTT+TGG + chr6_4:21950826-21950845 None:intergenic 50.0%
CTGAGAGACAGAGAGTAGGT+GGG + chr6_4:21950840-21950859 None:intergenic 50.0%
GTACCTGAGAGACAGAGAGT+AGG + chr6_4:21950844-21950863 None:intergenic 50.0%
! GGTGAAACTGTGGATGATGG+AGG - chr6_4:21951067-21951086 Msa0982270:CDS 50.0%
!! TGTGGATGATGGAGGATGCA+TGG - chr6_4:21951075-21951094 Msa0982270:CDS 50.0%
!! GTGGATGATGGAGGATGCAT+GGG - chr6_4:21951076-21951095 Msa0982270:CDS 50.0%
TGATTGTCCTCACTGTGGCT+TGG - chr6_4:21951179-21951198 Msa0982270:CDS 50.0%
ATAGTTGCCAAGCCACAGTG+AGG + chr6_4:21951189-21951208 None:intergenic 50.0%
! TGTGGCTTGGCAACTATCAG+AGG - chr6_4:21951192-21951211 Msa0982270:CDS 50.0%
TCCCAACGGATCTAAATGGG+TGG + chr6_4:21951252-21951271 None:intergenic 50.0%
!! TGTTTCTAGCAGCCATGGTC+AGG - chr6_4:21951297-21951316 Msa0982270:CDS 50.0%
TGTCATCAGCATCCTGACCA+TGG + chr6_4:21951312-21951331 None:intergenic 50.0%
CGGCGGTTATGGAGCAAGAT+AGG - chr6_4:21950705-21950724 Msa0982270:three_prime_UTR 55.0%
CCTGAGAGACAGAGAGTAGG+TGG + chr6_4:21950841-21950860 None:intergenic 55.0%
CCACCTACTCTCTGTCTCTC+AGG - chr6_4:21950838-21950857 Msa0982270:three_prime_UTR 55.0%
GCAGAAGCCACCTGCTTTGA+AGG + chr6_4:21951031-21951050 None:intergenic 55.0%
GTTAGCACAGGAGAGCCAGA+AGG - chr6_4:21951650-21951669 Msa0982270:five_prime_UTR 55.0%
AGGAGAGCCAGAAGGTAGAG+TGG - chr6_4:21951658-21951677 Msa0982270:five_prime_UTR 55.0%
AGAGCCAGAAGGTAGAGTGG+CGG - chr6_4:21951661-21951680 Msa0982270:five_prime_UTR 55.0%
AGATCCGCCACTCTACCTTC+TGG + chr6_4:21951668-21951687 None:intergenic 55.0%
CGGCGGTTATGGAGCAAGAT+AGG - chr6_4:21950705-21950724 Msa0982270:three_prime_UTR 55.0%
CCTGAGAGACAGAGAGTAGG+TGG + chr6_4:21950841-21950860 None:intergenic 55.0%
CCACCTACTCTCTGTCTCTC+AGG - chr6_4:21950838-21950857 Msa0982270:three_prime_UTR 55.0%
GCAGAAGCCACCTGCTTTGA+AGG + chr6_4:21951031-21951050 None:intergenic 55.0%
GTTAGCACAGGAGAGCCAGA+AGG - chr6_4:21951650-21951669 Msa0982270:five_prime_UTR 55.0%
AGGAGAGCCAGAAGGTAGAG+TGG - chr6_4:21951658-21951677 Msa0982270:five_prime_UTR 55.0%
AGAGCCAGAAGGTAGAGTGG+CGG - chr6_4:21951661-21951680 Msa0982270:five_prime_UTR 55.0%
AGATCCGCCACTCTACCTTC+TGG + chr6_4:21951668-21951687 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 21950523 21951815 21950523 ID=Msa0982270;Name=Msa0982270
chr6_4 mRNA 21950523 21951815 21950523 ID=Msa0982270-mRNA-1;Parent=Msa0982270;Name=Msa0982270-mRNA-1;_AED=0.05;_eAED=0.05;_QI=190|1|1|1|0.5|0.33|3|371|196
chr6_4 exon 21950523 21950666 21950523 ID=Msa0982270-mRNA-1:exon:6860;Parent=Msa0982270-mRNA-1
chr6_4 exon 21950694 21951364 21950694 ID=Msa0982270-mRNA-1:exon:6859;Parent=Msa0982270-mRNA-1
chr6_4 exon 21951479 21951815 21951479 ID=Msa0982270-mRNA-1:exon:6858;Parent=Msa0982270-mRNA-1
chr6_4 five_prime_UTR 21951626 21951815 21951626 ID=Msa0982270-mRNA-1:five_prime_utr;Parent=Msa0982270-mRNA-1
chr6_4 CDS 21951479 21951625 21951479 ID=Msa0982270-mRNA-1:cds;Parent=Msa0982270-mRNA-1
chr6_4 CDS 21950921 21951364 21950921 ID=Msa0982270-mRNA-1:cds;Parent=Msa0982270-mRNA-1
chr6_4 three_prime_UTR 21950694 21950920 21950694 ID=Msa0982270-mRNA-1:three_prime_utr;Parent=Msa0982270-mRNA-1
chr6_4 three_prime_UTR 21950523 21950666 21950523 ID=Msa0982270-mRNA-1:three_prime_utr;Parent=Msa0982270-mRNA-1
Gene Sequence

>Msa0982270

ATGGAGCAAGATAGGAGGCTTGAACTCATCGACCAAGCAATTCAAAAACATATTCATAACAAAAGTGACAATAATAATAATCATAACCTTAAAGACCACGAAACTGAATACCAAAAAGCTCTCTCCCACCTACTCTCTGTCTCTCAGCAGTTGGAAATGTCTAAAGGAGGTGAAACAGTTAACCAATCCGAAGCATCTAGTCCTTCAAAGCAGGTGGCTTCTGCAATTGAGAAAACAAAAGGTGAAACTGTGGATGATGGAGGATGCATGGGAAGTGAAAAGGATGAGATAATCAAAGAGCTGAAAAAGGTGAAGAAGCAGAATTTTGTGACTCATTGTCTTCTTTCAGCAATGATTGTCCTCACTGTGGCTTGGCAACTATCAGAGGTTTCACTTGTGATGAGAGTGAAGGATGGAATAAACCACCCATTTAGATCCGTTGGGAGTATGTTCAAAGAGATAGTGAAAGATGTTTCTAGCAGCCATGGTCAGGATGCTGATGACAAAGAAAACAATGAATCCACATCTCTTCCTTCTCTTAAGATTCCAGATATGACCAACATGGATGTACCAAATTTCGGAAAGGAATGA

Protein sequence

>Msa0982270

MEQDRRLELIDQAIQKHIHNKSDNNNNHNLKDHETEYQKALSHLLSVSQQLEMSKGGETVNQSEASSPSKQVASAIEKTKGETVDDGGCMGSEKDEIIKELKKVKKQNFVTHCLLSAMIVLTVAWQLSEVSLVMRVKDGINHPFRSVGSMFKEIVKDVSSSHGQDADDKENNESTSLPSLKIPDMTNMDVPNFGKE*