AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1054410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1054410 MtrunA17_Chr7g0224571 96.833 442 2 2 1 430 1 442 0.0 871
Msa1054410 MtrunA17_Chr5g0420221 57.919 442 167 6 1 430 17 451 0.0 511
Msa1054410 MtrunA17_Chr7g0222461 54.018 448 182 7 1 430 10 451 1.59e-159 457
Msa1054410 MtrunA17_Chr4g0056741 47.748 444 206 5 3 430 8 441 1.91e-137 401
Msa1054410 MtrunA17_Chr5g0398581 47.991 448 199 7 3 430 8 441 2.29e-137 400
Msa1054410 MtrunA17_Chr1g0159541 46.517 445 215 9 1 423 9 452 2.55e-129 380
Msa1054410 MtrunA17_Chr3g0125661 46.727 443 211 10 1 423 9 446 2.81e-128 378
Msa1054410 MtrunA17_Chr5g0400941 40.618 421 216 7 1 388 9 428 4.54e-104 317
Msa1054410 MtrunA17_Chr4g0054261 36.653 472 255 8 1 428 28 499 3.37e-91 284
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1054410 AT3G01990.7 66.590 437 120 8 2 418 17 447 0.0 560
Msa1054410 AT3G01990.5 66.590 437 120 8 2 418 17 447 0.0 560
Msa1054410 AT3G01990.10 66.590 437 120 8 2 418 3 433 0.0 559
Msa1054410 AT3G01990.1 66.590 437 120 8 2 418 3 433 0.0 559
Msa1054410 AT3G01990.6 70.781 397 97 6 2 385 17 407 0.0 552
Msa1054410 AT3G01990.11 70.781 397 97 6 2 385 3 393 0.0 551
Msa1054410 AT1G69040.2 60.179 447 159 6 1 430 11 455 0.0 539
Msa1054410 AT1G69040.1 60.179 447 159 6 1 430 7 451 0.0 539
Msa1054410 AT2G03730.2 56.444 450 170 8 1 428 11 456 1.74e-168 481
Msa1054410 AT2G03730.1 56.444 450 170 8 1 428 11 456 1.74e-168 481
Msa1054410 AT3G01990.2 68.693 329 84 6 2 317 17 339 1.17e-154 441
Msa1054410 AT3G01990.4 67.665 334 89 6 2 322 17 344 1.45e-154 441
Msa1054410 AT3G01990.9 67.665 334 89 6 2 322 3 330 3.17e-154 440
Msa1054410 AT1G76990.4 48.630 438 199 8 1 415 9 443 9.79e-135 395
Msa1054410 AT1G76990.5 48.630 438 199 8 1 415 9 443 9.79e-135 395
Msa1054410 AT1G76990.2 48.630 438 199 8 1 415 9 443 9.79e-135 395
Msa1054410 AT1G76990.3 48.630 438 199 8 1 415 9 443 9.79e-135 395
Msa1054410 AT1G76990.1 48.630 438 199 8 1 415 9 443 9.79e-135 395
Msa1054410 AT1G12420.1 48.098 447 200 7 3 430 8 441 2.24e-132 388
Msa1054410 AT3G01990.3 66.327 294 80 6 2 282 17 304 2.06e-129 376
Msa1054410 AT3G01990.8 66.327 294 80 6 2 282 3 290 4.40e-129 375
Msa1054410 AT4G22780.1 47.046 457 196 9 3 429 8 448 2.11e-128 379
Msa1054410 AT4G22780.2 47.046 457 196 9 3 429 8 448 2.11e-128 379
Msa1054410 AT5G25320.1 42.529 435 186 8 14 393 24 449 8.14e-119 356
Msa1054410 AT5G25320.3 42.344 418 177 8 30 392 1 409 7.87e-114 342
Msa1054410 AT5G65890.1 40.319 439 216 8 1 400 10 441 1.84e-104 318
Msa1054410 AT5G65890.3 40.319 439 216 8 1 400 10 441 1.84e-104 318
Msa1054410 AT1G12420.2 45.550 382 176 7 68 430 1 369 1.59e-98 299
Msa1054410 AT5G25320.2 41.713 362 147 8 14 320 24 376 2.21e-90 279
Msa1054410 AT5G65890.4 38.889 396 196 8 44 400 1 389 9.75e-87 271
Msa1054410 AT5G65890.2 38.889 396 196 8 44 400 1 389 9.75e-87 271
Msa1054410 AT5G65890.5 38.339 313 164 6 115 400 17 327 1.90e-65 214

Find 148 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGATGGAGTTTGGTTTA+TGG 0.140421 7_2:-25966728 Msa1054410:CDS
TCTCTCAGCCTCTGAGCTTA+TGG 0.248727 7_2:+25964621 None:intergenic
AAACATTATTATTGATGTTT+TGG 0.250496 7_2:-25963201 Msa1054410:three_prime_UTR
TCAATAATCTTTGGATCAAC+TGG 0.254312 7_2:+25963982 None:intergenic
TATGAACCTTGTGATTAAAA+AGG 0.256217 7_2:-25966761 Msa1054410:CDS
CGGATTGAATCAATAATCTT+TGG 0.268125 7_2:+25963973 None:intergenic
TACTCTCAGTATTGTTGCTT+TGG 0.280540 7_2:-25963349 Msa1054410:three_prime_UTR
TACATATACATAAGTAAATA+TGG 0.283989 7_2:-25968098 Msa1054410:exon
ATATGCAGAGGCAAGAAATT+TGG 0.288218 7_2:+25968161 None:intergenic
ATGAATATGCGAAGCTTATA+AGG 0.296452 7_2:-25968072 Msa1054410:CDS
CGTCCCGCCTCTCCACAATA+AGG 0.298680 7_2:-25965521 Msa1054410:CDS
CCAAGAGTAAATAGTACTTT+TGG 0.304611 7_2:-25963492 Msa1054410:three_prime_UTR
AGAAAGGACAGGGGCTTATC+AGG 0.309556 7_2:-25965181 Msa1054410:intron
CATTTAGTTGTGTTTGTATA+TGG 0.311977 7_2:-25963542 Msa1054410:three_prime_UTR
ACAACAATTGGATTTCTCTT+TGG 0.313884 7_2:-25963880 Msa1054410:CDS
CACACTGTTATTGAACTTAC+TGG 0.317762 7_2:-25965696 Msa1054410:CDS
TGAAAACGCCACTGTTATTC+AGG 0.320918 7_2:-25967190 Msa1054410:intron
ATATTTCCTCTGATGGAGTT+TGG 0.326275 7_2:-25966735 Msa1054410:CDS
CTCATTGACGTTTCAAAGCT+CGG 0.341739 7_2:+25965750 None:intergenic
CTTTCTCTTTCCTTAGTTGT+GGG 0.347061 7_2:-25968218 Msa1054410:five_prime_UTR
CTCTCAGCCTCTGAGCTTAT+GGG 0.354199 7_2:+25964622 None:intergenic
ACATCCTGGAGTTACGTATA+GGG 0.365344 7_2:-25965436 Msa1054410:CDS
GTTGTTCCTTGAGGTGGTTT+TGG 0.365505 7_2:+25963898 None:intergenic
ATTTGCTTTGCAACGTCCTC+AGG 0.366403 7_2:-25965497 Msa1054410:CDS
GGACTTAGAGAAAGAGATAA+AGG 0.373479 7_2:-25965354 Msa1054410:CDS
AGTTACATCAGTGACGTAAA+AGG 0.381411 7_2:+25964011 None:intergenic
CCACCTCAAGGAACAACAAT+TGG 0.386888 7_2:-25963892 Msa1054410:CDS
CACATCCTGGAGTTACGTAT+AGG 0.390969 7_2:-25965437 Msa1054410:CDS
CCAAAAGTACTATTTACTCT+TGG 0.394237 7_2:+25963492 None:intergenic
GCAGAAATATCAACAGAAAA+CGG 0.397174 7_2:-25964048 Msa1054410:CDS
TCCCCTTAGCAAGAGGGGCT+TGG 0.398430 7_2:-25963702 Msa1054410:three_prime_UTR
GAGGCGGGACGGATCTTCTA+TGG 0.405276 7_2:+25965533 None:intergenic
TCTTTCTCTTTCCTTAGTTG+TGG 0.418607 7_2:-25968219 Msa1054410:five_prime_UTR
CGTCAATGAGAGAGTCTGTT+GGG 0.427819 7_2:-25965737 Msa1054410:CDS
ATCTTCTATGGCACAACCAC+TGG 0.440100 7_2:+25965545 None:intergenic
ATACACAGGAGAGGACGTTT+AGG 0.442615 7_2:+25963804 None:intergenic
AAGGCTTATATTTCCTCTGA+TGG 0.443541 7_2:-25966742 Msa1054410:CDS
CAGAAATATCAACAGAAAAC+GGG 0.444348 7_2:-25964047 Msa1054410:CDS
AGGGGAAATAATTATTGAAT+CGG 0.445029 7_2:-25963296 Msa1054410:three_prime_UTR
TTGCTGTTTGTGACAGTAGC+AGG 0.446995 7_2:-25963012 Msa1054410:three_prime_UTR
ATGTGGTTACCGCTGAGATT+TGG 0.454363 7_2:-25965614 Msa1054410:CDS
GTCCCGCCTCTCCACAATAA+GGG 0.458534 7_2:-25965520 Msa1054410:CDS
AAGAAATTCTCCCACAACTA+AGG 0.463575 7_2:+25968208 None:intergenic
GAGACAGTTACATGTGGAAA+TGG 0.463913 7_2:+25965330 None:intergenic
GTTGGTGTAATTTGGAGTCC+TGG 0.470607 7_2:-25963470 Msa1054410:three_prime_UTR
TGCTGGTCGAGCTGCGTACA+TGG 0.470625 7_2:-25963114 Msa1054410:three_prime_UTR
AAACAAACACGGGATACTCT+TGG 0.470655 7_2:-25966806 Msa1054410:CDS
TAATTATTGAATCGGAATTG+AGG 0.470913 7_2:-25963288 Msa1054410:three_prime_UTR
ATCCCTTATTGTGGAGAGGC+GGG 0.479361 7_2:+25965518 None:intergenic
TTAAATTAGGATCTAATTGG+CGG 0.479714 7_2:+25968305 None:intergenic
CCAATTGTTGTTCCTTGAGG+TGG 0.481529 7_2:+25963892 None:intergenic
CTGTGTCGCCGATCTGTCTA+CGG 0.482293 7_2:+25963953 None:intergenic
CCCCTTGTTTCAACCAACAT+TGG 0.482423 7_2:+25963314 None:intergenic
TTTAATGTGACGGATCGAAA+TGG 0.483271 7_2:-25966585 Msa1054410:CDS
TTATATGATCCTTCGAATGC+TGG 0.485960 7_2:-25963131 Msa1054410:three_prime_UTR
GAGATTTATTAGACCAATGT+TGG 0.486166 7_2:-25963327 Msa1054410:three_prime_UTR
TGTACAGTAACATATTACTT+AGG 0.491071 7_2:-25963618 Msa1054410:three_prime_UTR
TCACAAAATTATCTTAATGC+AGG 0.491396 7_2:+25963035 None:intergenic
GGTTCATATCTGAAATAACT+TGG 0.492510 7_2:+25966776 None:intergenic
TTACATAATCATATCAATAG+AGG 0.500413 7_2:-25963225 Msa1054410:three_prime_UTR
ATTCCAAGCCCCTCTTGCTA+AGG 0.501817 7_2:+25963699 None:intergenic
TAGGATCTAATTGGCGGTGG+TGG 0.509157 7_2:+25968311 None:intergenic
TTGATGAAAGATGAATACTA+TGG 0.510333 7_2:-25963160 Msa1054410:three_prime_UTR
TGTCTCAGACTGTACTGAAA+GGG 0.510423 7_2:-25965313 Msa1054410:CDS
AGAATAAATATTACCTAGGT+GGG 0.511593 7_2:+25968041 None:intergenic
GGACTATGAAAGAGTTGAAA+GGG 0.513096 7_2:-25965379 Msa1054410:CDS
TTCCAAGCCCCTCTTGCTAA+GGG 0.516773 7_2:+25963700 None:intergenic
TGAAGCGGCAATTGAGAGGC+GGG 0.524380 7_2:-25964578 Msa1054410:CDS
CTTACTGGCACAGACAGGCC+TGG 0.525209 7_2:-25965681 Msa1054410:intron
GATTCAATCCGTAGACAGAT+CGG 0.527568 7_2:-25963961 Msa1054410:CDS
ATGGAATGAGGCTGCTAGAG+TGG 0.530587 7_2:-25963095 Msa1054410:three_prime_UTR
CGGTAACCACATTGCAGCGA+AGG 0.530637 7_2:+25965625 None:intergenic
AAAACTGCACTTTCACATCC+TGG 0.532657 7_2:-25965450 Msa1054410:CDS
ACAATATCAAACAACAGCTT+CGG 0.533003 7_2:+25965255 None:intergenic
GAGGAATATTGCTCGAGTGC+GGG 0.533688 7_2:-25963269 Msa1054410:three_prime_UTR
TTTCCTCCCCTTAGCAAGAG+GGG 0.539004 7_2:-25963707 Msa1054410:three_prime_UTR
ATGGTGTGGTTCAGACAGAA+AGG 0.542138 7_2:-25965197 Msa1054410:CDS
GGCACAACCACTGGAATCAT+CGG 0.542861 7_2:+25965554 None:intergenic
CAATAATCTTTGGATCAACT+GGG 0.551404 7_2:+25963983 None:intergenic
TGGAATTTATACTGCACAGT+AGG 0.552517 7_2:-25963682 Msa1054410:three_prime_UTR
TTGTATGCAGGGGATGGAGC+TGG 0.553032 7_2:-25964151 Msa1054410:intron
GTGGTTCAGACAGAAAGGAC+AGG 0.555199 7_2:-25965192 Msa1054410:CDS
ACCAATGTTGGTTGAAACAA+GGG 0.556122 7_2:-25963315 Msa1054410:three_prime_UTR
TGCAGAGGCAAGAAATTTGG+AGG 0.556549 7_2:+25968164 None:intergenic
GCTCAGAGGCTGAGAGAGAA+CGG 0.556750 7_2:-25964615 Msa1054410:CDS
AATCCAATTGTTGTTCCTTG+AGG 0.560279 7_2:+25963889 None:intergenic
AAGAATAAATATTACCTAGG+TGG 0.560958 7_2:+25968040 None:intergenic
AACACAGATTCACATTTACC+AGG 0.561464 7_2:+25963452 None:intergenic
TGCTTTGCAACGTCCTCAGG+GGG 0.561556 7_2:-25965494 Msa1054410:CDS
TTTGCTTTGCAACGTCCTCA+GGG 0.563312 7_2:-25965496 Msa1054410:CDS
TTGAACTTACTGGCACAGAC+AGG 0.567860 7_2:-25965686 Msa1054410:CDS
AATTAGGATCTAATTGGCGG+TGG 0.570949 7_2:+25968308 None:intergenic
GACCAATGTTGGTTGAAACA+AGG 0.571324 7_2:-25963316 Msa1054410:three_prime_UTR
CTGTCTCAGACTGTACTGAA+AGG 0.574748 7_2:-25965314 Msa1054410:CDS
ATAACAGTGTGTTCTTCAGT+AGG 0.575373 7_2:+25965708 None:intergenic
CTATCCCTATACGTAACTCC+AGG 0.576701 7_2:+25965432 None:intergenic
GATCGGCGACACAGTACTGC+AGG 0.577042 7_2:-25963944 Msa1054410:CDS
AGTCATTGATTATATTCAGA+GGG 0.577703 7_2:-25966541 Msa1054410:intron
AGATCGTGTAGGACTCCTCT+CGG 0.580884 7_2:-25964115 Msa1054410:CDS
AATTGAGAGGCGGGCATCTG+AGG 0.581375 7_2:-25964569 Msa1054410:intron
GATGGAGTTTGGTTTATGGA+TGG 0.582629 7_2:-25966724 Msa1054410:intron
GGGACTATGAAAGAGTTGAA+AGG 0.583175 7_2:-25965380 Msa1054410:CDS
GTCTTGAAGCGGCAATTGAG+AGG 0.589946 7_2:-25964582 Msa1054410:CDS
GCAAAGCAAATCCCTTATTG+TGG 0.590680 7_2:+25965509 None:intergenic
TATGAAAGAGTTGAAAGGGC+AGG 0.592168 7_2:-25965375 Msa1054410:CDS
CTTATTGTGGAGAGGCGGGA+CGG 0.600464 7_2:+25965522 None:intergenic
TGAGGAATATTGCTCGAGTG+CGG 0.602595 7_2:-25963270 Msa1054410:three_prime_UTR
CATATTACTTAGGTTGAGTG+TGG 0.608570 7_2:-25963608 Msa1054410:three_prime_UTR
AAGTCATTGATTATATTCAG+AGG 0.614562 7_2:-25966542 Msa1054410:CDS
TTGAAGCGGCAATTGAGAGG+CGG 0.615320 7_2:-25964579 Msa1054410:CDS
CGCAGACCTTCGCTGCAATG+TGG 0.616183 7_2:-25965631 Msa1054410:CDS
AATCCCTTATTGTGGAGAGG+CGG 0.617749 7_2:+25965517 None:intergenic
ATCATCGGTTACATGAACTA+CGG 0.623701 7_2:+25965569 None:intergenic
TGGTTCAGACAGAAAGGACA+GGG 0.627734 7_2:-25965191 Msa1054410:CDS
CGAGCTGCGTACATGGAATG+AGG 0.628101 7_2:-25963107 Msa1054410:three_prime_UTR
CATAAACCAAACTCCATCAG+AGG 0.629050 7_2:+25966729 None:intergenic
AAGCCCCTCTTGCTAAGGGG+AGG 0.630008 7_2:+25963704 None:intergenic
GCAGCTCGACCAGCATTCGA+AGG 0.633456 7_2:+25963122 None:intergenic
ACGTCAATGAGAGAGTCTGT+TGG 0.641528 7_2:-25965738 Msa1054410:CDS
TAAGGAGGATGAACCCACCT+AGG 0.644112 7_2:-25968054 Msa1054410:intron
GCAAATCCCTTATTGTGGAG+AGG 0.645179 7_2:+25965514 None:intergenic
TTGCTTTGCAACGTCCTCAG+GGG 0.645987 7_2:-25965495 Msa1054410:CDS
GACTCCTCTCGGATATCACA+AGG 0.651775 7_2:-25964104 Msa1054410:CDS
CTTTCACCAAAACCACCTCA+AGG 0.651932 7_2:-25963904 Msa1054410:CDS
GCTTATACAGTGTCTTGAAG+CGG 0.655208 7_2:-25964593 Msa1054410:CDS
GAAATAGCGAGAATATACAC+AGG 0.655979 7_2:+25963790 None:intergenic
TTGACAGTGTAAACAAACAC+GGG 0.657246 7_2:-25966816 Msa1054410:CDS
TCCAAGCCCCTCTTGCTAAG+GGG 0.658022 7_2:+25963701 None:intergenic
TGATACATAAACTGTTCTCG+CGG 0.658352 7_2:+25964076 None:intergenic
ATACTGAGAGTAAAAGAGAG+AGG 0.662761 7_2:+25963360 None:intergenic
GTTGACAGTGTAAACAAACA+CGG 0.663549 7_2:-25966817 Msa1054410:CDS
AATATCAACAGAAAACGGGA+AGG 0.664815 7_2:-25964043 Msa1054410:CDS
CATGTAACCGATGATTCCAG+TGG 0.665641 7_2:-25965561 Msa1054410:CDS
AGCGAGAATATACACAGGAG+AGG 0.668278 7_2:+25963795 None:intergenic
AAGAGTGAAGAAATATGCAG+AGG 0.669263 7_2:+25968149 None:intergenic
CAGTCTGAGACAGTTACATG+TGG 0.672783 7_2:+25965324 None:intergenic
AGAGTGGAGCAGTGTTCACA+TGG 0.675233 7_2:-25963079 Msa1054410:three_prime_UTR
GCAGAGGCAAGAAATTTGGA+GGG 0.679928 7_2:+25968165 None:intergenic
TGGCTTTCCCATAAGCTCAG+AGG 0.681534 7_2:-25964629 Msa1054410:CDS
TTGTGCACAGAAGATCGTGT+AGG 0.682342 7_2:-25964126 Msa1054410:CDS
GTCAATGAGAGAGTCTGTTG+GGG 0.683733 7_2:-25965736 Msa1054410:CDS
AATATGCGAAGCTTATAAGG+AGG 0.687339 7_2:-25968069 Msa1054410:CDS
TACTGAAAGGGATTATACTG+TGG 0.689453 7_2:-25965301 Msa1054410:CDS
CCAATGTTGGTTGAAACAAG+GGG 0.692719 7_2:-25963314 Msa1054410:three_prime_UTR
AAGCCATACCTGAATAACAG+TGG 0.722877 7_2:+25967182 None:intergenic
AAATCCTTGTGATATCCGAG+AGG 0.755556 7_2:+25964100 None:intergenic
ATTATGCGTCCAAATCTCAG+CGG 0.777134 7_2:+25965605 None:intergenic
GGTTCAGACAGAAAGGACAG+GGG 0.787336 7_2:-25965190 Msa1054410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAGATAATTAAAATTTGA+GGG + chr7_2:25963390-25963409 None:intergenic 10.0%
!!! ACATATTTATATATTTTTGT+TGG + chr7_2:25964050-25964069 None:intergenic 10.0%
!! ATCTTATTGAATATAAAAAA+GGG + chr7_2:25964481-25964500 None:intergenic 10.0%
!! AATCTTATTGAATATAAAAA+AGG + chr7_2:25964482-25964501 None:intergenic 10.0%
!! AAATTATAATTGATCAATAA+TGG + chr7_2:25965110-25965129 None:intergenic 10.0%
!! AAAACAGATTAAATTATAAA+AGG - chr7_2:25966958-25966977 Msa1054410:intron 10.0%
!! TACATATACATAAGTAAATA+TGG - chr7_2:25963234-25963253 Msa1054410:three_prime_UTR 15.0%
!! TATATTATTATTGTTATGGT+TGG - chr7_2:25963361-25963380 Msa1054410:three_prime_UTR 15.0%
!! GATAAGATAATTAAAATTTG+AGG + chr7_2:25963391-25963410 None:intergenic 15.0%
!! ATATATAAATATGTTTGTGT+TGG - chr7_2:25964056-25964075 Msa1054410:CDS 15.0%
!! GTGAATAAAAATTAGTTATA+AGG + chr7_2:25967032-25967051 None:intergenic 15.0%
!!! ACTAAATCATAGATATTTTA+AGG + chr7_2:25967678-25967697 None:intergenic 15.0%
!!! AAACATTATTATTGATGTTT+TGG - chr7_2:25968131-25968150 Msa1054410:five_prime_UTR 15.0%
!!! CTTTTAAATTAGGATCTAAT+TGG + chr7_2:25963033-25963052 None:intergenic 20.0%
!!! GTGTTTTCAACTTTTAAATT+AGG + chr7_2:25963043-25963062 None:intergenic 20.0%
!! ATGAAGAATAAATATTACCT+AGG + chr7_2:25963298-25963317 None:intergenic 20.0%
!!! TTTTGTGAAAAATATACAGA+GGG + chr7_2:25964185-25964204 None:intergenic 20.0%
!!! ATTTTGTGAAAAATATACAG+AGG + chr7_2:25964186-25964205 None:intergenic 20.0%
!! TTCAATGTAATTACATATGT+CGG + chr7_2:25964371-25964390 None:intergenic 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG - chr7_2:25964396-25964415 Msa1054410:intron 20.0%
!!! AATAAGATTGTTTGTTTTAC+AGG - chr7_2:25964493-25964512 Msa1054410:intron 20.0%
!! ACAAAAATCCAATTAATACT+TGG + chr7_2:25964715-25964734 None:intergenic 20.0%
!!! TTTGAAATTGGTTTTGATTT+TGG - chr7_2:25964959-25964978 Msa1054410:intron 20.0%
!!! TATTTTTTCTCTCAAAATGT+TGG - chr7_2:25965339-25965358 Msa1054410:CDS 20.0%
!!! AGTTTTCTATTACTAATATG+TGG - chr7_2:25965476-25965495 Msa1054410:CDS 20.0%
!! TCTTGACAATCTATAATTAA+GGG + chr7_2:25965503-25965522 None:intergenic 20.0%
!! TTCTTGACAATCTATAATTA+AGG + chr7_2:25965504-25965523 None:intergenic 20.0%
!! AATGAAACTTAACAGTATAT+AGG + chr7_2:25966564-25966583 None:intergenic 20.0%
!! ATATACTGTTAAGTTTCATT+CGG - chr7_2:25966564-25966583 Msa1054410:CDS 20.0%
!!! TTGTTTAGGAGTTTTATATT+CGG - chr7_2:25966672-25966691 Msa1054410:intron 20.0%
!!! TTTTTTGGATTTGATAATCT+AGG + chr7_2:25967760-25967779 None:intergenic 20.0%
!! TAGATTATCAAATCCAAAAA+AGG - chr7_2:25967759-25967778 Msa1054410:intron 20.0%
!! TTACATAATCATATCAATAG+AGG - chr7_2:25968107-25968126 Msa1054410:five_prime_UTR 20.0%
! TTAAATTAGGATCTAATTGG+CGG + chr7_2:25963030-25963049 None:intergenic 25.0%
! AGAAGAATAAAAAGTGAAGT+AGG + chr7_2:25963090-25963109 None:intergenic 25.0%
! AGAATAAATATTACCTAGGT+GGG + chr7_2:25963294-25963313 None:intergenic 25.0%
! AAGAATAAATATTACCTAGG+TGG + chr7_2:25963295-25963314 None:intergenic 25.0%
!!! TTACGCTATTTTTTTTACAG+TGG - chr7_2:25963427-25963446 Msa1054410:three_prime_UTR 25.0%
!! TTAATGAACTCGAATTGTTT+TGG - chr7_2:25963795-25963814 Msa1054410:three_prime_UTR 25.0%
! GAAATGAACTTGAATCAATT+AGG - chr7_2:25963924-25963943 Msa1054410:CDS 25.0%
!!! ATTTCTTCTTCTTTTTTGAC+TGG + chr7_2:25964236-25964255 None:intergenic 25.0%
! TATGAAACACATACACTTAT+CGG - chr7_2:25964307-25964326 Msa1054410:intron 25.0%
! TATGAACCTTGTGATTAAAA+AGG - chr7_2:25964571-25964590 Msa1054410:CDS 25.0%
!! TATAAGCCTTTTTAATCACA+AGG + chr7_2:25964580-25964599 None:intergenic 25.0%
! TAATTTCCTCTCTTAACTAT+TGG - chr7_2:25964631-25964650 Msa1054410:CDS 25.0%
!! AAGTCATTGATTATATTCAG+AGG - chr7_2:25964790-25964809 Msa1054410:intron 25.0%
!! AGTCATTGATTATATTCAGA+GGG - chr7_2:25964791-25964810 Msa1054410:intron 25.0%
!! GGAATATGTAGATTTGAAAT+TGG - chr7_2:25964947-25964966 Msa1054410:intron 25.0%
!! TTTTCATCAAAGTGAATTGT+TGG - chr7_2:25965064-25965083 Msa1054410:intron 25.0%
! GTCTACTAATTAAATTGGTA+TGG + chr7_2:25965271-25965290 None:intergenic 25.0%
! GTTGAGTCTACTAATTAAAT+TGG + chr7_2:25965276-25965295 None:intergenic 25.0%
! AATTGCGTTATTGATAAACT+GGG + chr7_2:25965368-25965387 None:intergenic 25.0%
! AAATTGCGTTATTGATAAAC+TGG + chr7_2:25965369-25965388 None:intergenic 25.0%
!!! TTGGTTTTCTGTATTTGTTT+AGG - chr7_2:25966226-25966245 Msa1054410:intron 25.0%
!! TGGTTTTCTGTATTTGTTTA+GGG - chr7_2:25966227-25966246 Msa1054410:intron 25.0%
!! AAAGATAACAGTTTGACTTT+AGG + chr7_2:25966379-25966398 None:intergenic 25.0%
! ATGATAAATAATAACACACC+TGG - chr7_2:25966787-25966806 Msa1054410:CDS 25.0%
! AAAACAAAAACTAGGCTTAA+CGG + chr7_2:25966838-25966857 None:intergenic 25.0%
!!! AGCCTAGTTTTTGTTTTTTT+TGG - chr7_2:25966841-25966860 Msa1054410:intron 25.0%
! AAAATAAGCTGATGTTTGTT+TGG - chr7_2:25966893-25966912 Msa1054410:intron 25.0%
!!! ATGTTTTTGAAAGTGTTGTT+TGG - chr7_2:25967079-25967098 Msa1054410:intron 25.0%
!!! TCTTTTCTTTAAGAGAAGTT+AGG + chr7_2:25967105-25967124 None:intergenic 25.0%
! ACTAAAATATGTTTGTATGC+AGG - chr7_2:25967169-25967188 Msa1054410:intron 25.0%
! CTAAAATATGTTTGTATGCA+GGG - chr7_2:25967170-25967189 Msa1054410:intron 25.0%
! TAAAATATGTTTGTATGCAG+GGG - chr7_2:25967171-25967190 Msa1054410:intron 25.0%
! AGAAAAATGCATACTTGTAA+AGG - chr7_2:25967585-25967604 Msa1054410:intron 25.0%
! TGTACAGTAACATATTACTT+AGG - chr7_2:25967714-25967733 Msa1054410:intron 25.0%
!!! AAATGTGCTATTTCCTTTTT+TGG + chr7_2:25967775-25967794 None:intergenic 25.0%
! CATTTAGTTGTGTTTGTATA+TGG - chr7_2:25967790-25967809 Msa1054410:intron 25.0%
! AGGGGAAATAATTATTGAAT+CGG - chr7_2:25968036-25968055 Msa1054410:intron 25.0%
! TAATTATTGAATCGGAATTG+AGG - chr7_2:25968044-25968063 Msa1054410:intron 25.0%
! TTGATGAAAGATGAATACTA+TGG - chr7_2:25968172-25968191 Msa1054410:five_prime_UTR 25.0%
! TCACAAAATTATCTTAATGC+AGG + chr7_2:25968300-25968319 None:intergenic 25.0%
!!! GTTTTGATTAATGTGTGTTT+TGG - chr7_2:25968342-25968361 Msa1054410:five_prime_UTR 25.0%
TAAAAAGTGAAGTAGGTAAG+TGG + chr7_2:25963083-25963102 None:intergenic 30.0%
ATGAATATGCGAAGCTTATA+AGG - chr7_2:25963260-25963279 Msa1054410:three_prime_UTR 30.0%
TACGTACGCATATTCATATA+TGG + chr7_2:25963628-25963647 None:intergenic 30.0%
TTAATGAGCTTGAATCGATT+TGG - chr7_2:25963671-25963690 Msa1054410:three_prime_UTR 30.0%
!! TTAATTGGCTCGAATCAATT+TGG - chr7_2:25963733-25963752 Msa1054410:three_prime_UTR 30.0%
!! TTAATTGACTCGAATCGATT+TGG - chr7_2:25963857-25963876 Msa1054410:CDS 30.0%
AGTAAAAATTGTTCCAACTC+AGG + chr7_2:25963954-25963973 None:intergenic 30.0%
ACTTGACTTTACTTACCTTA+TGG - chr7_2:25963971-25963990 Msa1054410:CDS 30.0%
ATATGTTTGTGTTGGAATTG+TGG - chr7_2:25964064-25964083 Msa1054410:CDS 30.0%
TGTTTCATAGATTGCAATCA+AGG + chr7_2:25964296-25964315 None:intergenic 30.0%
! GGTTCATATCTGAAATAACT+TGG + chr7_2:25964559-25964578 None:intergenic 30.0%
CTTCTGATCCAAGTATTAAT+TGG - chr7_2:25964704-25964723 Msa1054410:intron 30.0%
! TTTTGCAGTGTTTAATGTGA+CGG - chr7_2:25964737-25964756 Msa1054410:intron 30.0%
ATTGATTATATTCAGAGGGT+AGG - chr7_2:25964795-25964814 Msa1054410:intron 30.0%
!! TGAAGATTTCTAGCAAAGAA+CGG + chr7_2:25964901-25964920 None:intergenic 30.0%
! AATCTTCAAGTTAAGTAAGC+AGG - chr7_2:25964913-25964932 Msa1054410:intron 30.0%
AATCAACATGCACAAAATGA+GGG + chr7_2:25965024-25965043 None:intergenic 30.0%
TTTCCTAATCGAAATTACGT+TGG - chr7_2:25965134-25965153 Msa1054410:intron 30.0%
AAACCAACGTAATTTCGATT+AGG + chr7_2:25965140-25965159 None:intergenic 30.0%
CTCAAATTGACAAAAGTGAA+GGG + chr7_2:25965307-25965326 None:intergenic 30.0%
TCTCAAATTGACAAAAGTGA+AGG + chr7_2:25965308-25965327 None:intergenic 30.0%
ATTGCGTTATTGATAAACTG+GGG + chr7_2:25965367-25965386 None:intergenic 30.0%
! TTTTAGTCCATGCAAATTTG+TGG - chr7_2:25965386-25965405 Msa1054410:intron 30.0%
! ATCAGATTATGTTTGCTGAT+AGG - chr7_2:25965931-25965950 Msa1054410:intron 30.0%
! TCAGATTATGTTTGCTGATA+GGG - chr7_2:25965932-25965951 Msa1054410:intron 30.0%
ACAATATCAAACAACAGCTT+CGG + chr7_2:25966080-25966099 None:intergenic 30.0%
! ATGCAGTATGTAGTTTTTCA+TGG - chr7_2:25966116-25966135 Msa1054410:intron 30.0%
! GAAATGATCGTTCAACTTTT+TGG - chr7_2:25966207-25966226 Msa1054410:intron 30.0%
TAATAAGTGCTTACGCTATA+AGG + chr7_2:25966312-25966331 None:intergenic 30.0%
!!! GTTTTTTGTAAGAGTGCTTA+TGG + chr7_2:25966489-25966508 None:intergenic 30.0%
TACTGACATATATAGTTGTG+AGG + chr7_2:25966511-25966530 None:intergenic 30.0%
AAACTTAACAGTATATAGGC+CGG + chr7_2:25966560-25966579 None:intergenic 30.0%
! GAGAATTGTTCATGTTGTTT+AGG - chr7_2:25966658-25966677 Msa1054410:intron 30.0%
CGCCAAAAAAAACAAAAACT+AGG + chr7_2:25966846-25966865 None:intergenic 30.0%
! ATGAGCTTTTCAAATCAAGT+AGG + chr7_2:25966987-25967006 None:intergenic 30.0%
AGTATACCATTGAAGAATGA+GGG + chr7_2:25967152-25967171 None:intergenic 30.0%
TAGTATACCATTGAAGAATG+AGG + chr7_2:25967153-25967172 None:intergenic 30.0%
GCAGAAATATCAACAGAAAA+CGG - chr7_2:25967284-25967303 Msa1054410:intron 30.0%
CAGAAATATCAACAGAAAAC+GGG - chr7_2:25967285-25967304 Msa1054410:intron 30.0%
CAATAATCTTTGGATCAACT+GGG + chr7_2:25967352-25967371 None:intergenic 30.0%
TCAATAATCTTTGGATCAAC+TGG + chr7_2:25967353-25967372 None:intergenic 30.0%
CGGATTGAATCAATAATCTT+TGG + chr7_2:25967362-25967381 None:intergenic 30.0%
ACAACAATTGGATTTCTCTT+TGG - chr7_2:25967452-25967471 Msa1054410:intron 30.0%
!!! TCTCTTTGGAAGTTTTTTCA+AGG - chr7_2:25967466-25967485 Msa1054410:intron 30.0%
!! CCAAAAGTACTATTTACTCT+TGG + chr7_2:25967843-25967862 None:intergenic 30.0%
! CCAAGAGTAAATAGTACTTT+TGG - chr7_2:25967840-25967859 Msa1054410:intron 30.0%
! GAGTAAATAGTACTTTTGGT+TGG - chr7_2:25967844-25967863 Msa1054410:intron 30.0%
!! TACTTTTGGTTGGTGTAATT+TGG - chr7_2:25967854-25967873 Msa1054410:intron 30.0%
GAGATTTATTAGACCAATGT+TGG - chr7_2:25968005-25968024 Msa1054410:intron 30.0%
TCTTTCTCTTTCCTTAGTTG+TGG - chr7_2:25963113-25963132 Msa1054410:three_prime_UTR 35.0%
CTTTCTCTTTCCTTAGTTGT+GGG - chr7_2:25963114-25963133 Msa1054410:three_prime_UTR 35.0%
AAGAAATTCTCCCACAACTA+AGG + chr7_2:25963127-25963146 None:intergenic 35.0%
ATATGCAGAGGCAAGAAATT+TGG + chr7_2:25963174-25963193 None:intergenic 35.0%
AAGAGTGAAGAAATATGCAG+AGG + chr7_2:25963186-25963205 None:intergenic 35.0%
AATATGCGAAGCTTATAAGG+AGG - chr7_2:25963263-25963282 Msa1054410:three_prime_UTR 35.0%
!! CTGGGTTTGTTACTTCTATT+TGG - chr7_2:25963556-25963575 Msa1054410:three_prime_UTR 35.0%
!! GGTTTGTTACTTCTATTTGG+TGG - chr7_2:25963559-25963578 Msa1054410:three_prime_UTR 35.0%
TACTTGAGTTTGAATCCAAG+TGG - chr7_2:25963882-25963901 Msa1054410:CDS 35.0%
TCTCAAATTATTAGCGGTGT+CGG - chr7_2:25964402-25964421 Msa1054410:intron 35.0%
CAATCTATGAAGCACAGATA+CGG + chr7_2:25964451-25964470 None:intergenic 35.0%
GTTGACAGTGTAAACAAACA+CGG - chr7_2:25964515-25964534 Msa1054410:intron 35.0%
TTGACAGTGTAAACAAACAC+GGG - chr7_2:25964516-25964535 Msa1054410:intron 35.0%
AAGGCTTATATTTCCTCTGA+TGG - chr7_2:25964590-25964609 Msa1054410:CDS 35.0%
ATATTTCCTCTGATGGAGTT+TGG - chr7_2:25964597-25964616 Msa1054410:CDS 35.0%
AACTATTGGCAGGCATAATT+AGG - chr7_2:25964645-25964664 Msa1054410:CDS 35.0%
ACTATTGGCAGGCATAATTA+GGG - chr7_2:25964646-25964665 Msa1054410:CDS 35.0%
!! TTTAATGTGACGGATCGAAA+TGG - chr7_2:25964747-25964766 Msa1054410:intron 35.0%
AAAACGATCCTAAAGATCAG+AGG + chr7_2:25965000-25965019 None:intergenic 35.0%
CAATCAACATGCACAAAATG+AGG + chr7_2:25965025-25965044 None:intergenic 35.0%
TCATCAAAGTGAATTGTTGG+AGG - chr7_2:25965067-25965086 Msa1054410:intron 35.0%
CATCAAAGTGAATTGTTGGA+GGG - chr7_2:25965068-25965087 Msa1054410:intron 35.0%
ATCAAAGTGAATTGTTGGAG+GGG - chr7_2:25965069-25965088 Msa1054410:intron 35.0%
!! TTGGTTTTCTGTATTCTTCG+AGG - chr7_2:25965153-25965172 Msa1054410:intron 35.0%
CTATTAGCCACAAATTTGCA+TGG + chr7_2:25965396-25965415 None:intergenic 35.0%
!! TTATTTCTAACAGCCAGATC+AGG + chr7_2:25965435-25965454 None:intergenic 35.0%
ATAACAGTGTGTTCTTCAGT+AGG + chr7_2:25965627-25965646 None:intergenic 35.0%
CACACTGTTATTGAACTTAC+TGG - chr7_2:25965636-25965655 Msa1054410:CDS 35.0%
CAGATTTCAGATAGTAAACC+AGG + chr7_2:25965672-25965691 None:intergenic 35.0%
! ATCATCGGTTACATGAACTA+CGG + chr7_2:25965766-25965785 None:intergenic 35.0%
GGACTATGAAAGAGTTGAAA+GGG - chr7_2:25965953-25965972 Msa1054410:intron 35.0%
GGACTTAGAGAAAGAGATAA+AGG - chr7_2:25965978-25965997 Msa1054410:intron 35.0%
TACTGAAAGGGATTATACTG+TGG - chr7_2:25966031-25966050 Msa1054410:intron 35.0%
! GTATGTAGTTTTTCATGGTG+TGG - chr7_2:25966121-25966140 Msa1054410:intron 35.0%
!! ATATTTTGTTGTCTGCCGTT+AGG - chr7_2:25966185-25966204 Msa1054410:intron 35.0%
GTTGAACGATCATTTCCTAA+CGG + chr7_2:25966203-25966222 None:intergenic 35.0%
AAACAGAACCTATGTTTGAC+GGG + chr7_2:25966266-25966285 None:intergenic 35.0%
CAAACAGAACCTATGTTTGA+CGG + chr7_2:25966267-25966286 None:intergenic 35.0%
!! GCTGTTTTATTAAGCTATCC+TGG - chr7_2:25966410-25966429 Msa1054410:intron 35.0%
TGAAATAAGTCATTCCAACC+CGG - chr7_2:25966538-25966557 Msa1054410:intron 35.0%
AACTTAACAGTATATAGGCC+GGG + chr7_2:25966559-25966578 None:intergenic 35.0%
! TTTTATATTCGGCACGTTGA+TGG - chr7_2:25966683-25966702 Msa1054410:intron 35.0%
TGATACATAAACTGTTCTCG+CGG + chr7_2:25967259-25967278 None:intergenic 35.0%
AATATCAACAGAAAACGGGA+AGG - chr7_2:25967289-25967308 Msa1054410:intron 35.0%
AGTTACATCAGTGACGTAAA+AGG + chr7_2:25967324-25967343 None:intergenic 35.0%
! TTTTACGTCACTGATGTAAC+TGG - chr7_2:25967323-25967342 Msa1054410:intron 35.0%
! AATCCAATTGTTGTTCCTTG+AGG + chr7_2:25967446-25967465 None:intergenic 35.0%
GAAATAGCGAGAATATACAC+AGG + chr7_2:25967545-25967564 None:intergenic 35.0%
TGGAATTTATACTGCACAGT+AGG - chr7_2:25967650-25967669 Msa1054410:intron 35.0%
!! CATATTACTTAGGTTGAGTG+TGG - chr7_2:25967724-25967743 Msa1054410:intron 35.0%
AACACAGATTCACATTTACC+AGG + chr7_2:25967883-25967902 None:intergenic 35.0%
ATACTGAGAGTAAAAGAGAG+AGG + chr7_2:25967975-25967994 None:intergenic 35.0%
! TACTCTCAGTATTGTTGCTT+TGG - chr7_2:25967983-25968002 Msa1054410:intron 35.0%
! ACCAATGTTGGTTGAAACAA+GGG - chr7_2:25968017-25968036 Msa1054410:intron 35.0%
TTATATGATCCTTCGAATGC+TGG - chr7_2:25968201-25968220 Msa1054410:five_prime_UTR 35.0%
AATTAGGATCTAATTGGCGG+TGG + chr7_2:25963027-25963046 None:intergenic 40.0%
! GGACTTGATAATTTCCTCTC+TGG - chr7_2:25963524-25963543 Msa1054410:three_prime_UTR 40.0%
!! TCCTCTCTGGAATGATAATC+TGG - chr7_2:25963537-25963556 Msa1054410:three_prime_UTR 40.0%
!! CCTCTCTGGAATGATAATCT+GGG - chr7_2:25963538-25963557 Msa1054410:three_prime_UTR 40.0%
TACCTGAGTTTGAATCCAAG+TGG - chr7_2:25963696-25963715 Msa1054410:three_prime_UTR 40.0%
AACCACTTGGATTCAAACTC+AGG + chr7_2:25963701-25963720 None:intergenic 40.0%
GAGTTTGAATCCAAGTGGTT+CGG - chr7_2:25963701-25963720 Msa1054410:three_prime_UTR 40.0%
GAGTAACTGAGTTTGAATCC+AGG - chr7_2:25963755-25963774 Msa1054410:three_prime_UTR 40.0%
TAACTGAGTTTGAATCCAGG+TGG - chr7_2:25963758-25963777 Msa1054410:three_prime_UTR 40.0%
AACCACTTGGATTCAAACTC+AGG + chr7_2:25963701-25963720 None:intergenic 40.0%
GAGTTTGAATCCAAGTGGTT+CGG - chr7_2:25963701-25963720 Msa1054410:three_prime_UTR 40.0%
GAGTTTGAATCCAAGTGGTT+CGG - chr7_2:25963701-25963720 Msa1054410:three_prime_UTR 40.0%
!! TCAATTAGGAGTACCTGAGT+TGG - chr7_2:25963938-25963957 Msa1054410:CDS 40.0%
! TAATCTGGAATCCCGGATTT+CGG + chr7_2:25963997-25964016 None:intergenic 40.0%
TGAAAACGCCACTGTTATTC+AGG - chr7_2:25964142-25964161 Msa1054410:CDS 40.0%
AAGCCATACCTGAATAACAG+TGG + chr7_2:25964153-25964172 None:intergenic 40.0%
AAACAAACACGGGATACTCT+TGG - chr7_2:25964526-25964545 Msa1054410:intron 40.0%
CATAAACCAAACTCCATCAG+AGG + chr7_2:25964606-25964625 None:intergenic 40.0%
! CTCTGATGGAGTTTGGTTTA+TGG - chr7_2:25964604-25964623 Msa1054410:CDS 40.0%
! GATGGAGTTTGGTTTATGGA+TGG - chr7_2:25964608-25964627 Msa1054410:CDS 40.0%
TTCCTCTCTTAACTATTGGC+AGG - chr7_2:25964635-25964654 Msa1054410:CDS 40.0%
! TTTTTGTTGCTCCATCTCTG+TGG - chr7_2:25964862-25964881 Msa1054410:intron 40.0%
AGTAAGCAGGACAACGATAT+TGG - chr7_2:25964926-25964945 Msa1054410:intron 40.0%
ATCAATCGCCTCTGATCTTT+AGG - chr7_2:25964989-25965008 Msa1054410:intron 40.0%
TCAAAGTGAATTGTTGGAGG+GGG - chr7_2:25965070-25965089 Msa1054410:intron 40.0%
! AGATTTTGTGCATGAACCTG+CGG - chr7_2:25965178-25965197 Msa1054410:intron 40.0%
ACAAAAGTGAAGGGATCAGA+TGG + chr7_2:25965298-25965317 None:intergenic 40.0%
CTCATTGACGTTTCAAAGCT+CGG + chr7_2:25965585-25965604 None:intergenic 40.0%
ATTATGCGTCCAAATCTCAG+CGG + chr7_2:25965730-25965749 None:intergenic 40.0%
GCAAAGCAAATCCCTTATTG+TGG + chr7_2:25965826-25965845 None:intergenic 40.0%
!! AGTGCAGTTTTTGCTGTCTT+CGG + chr7_2:25965873-25965892 None:intergenic 40.0%
AAAACTGCACTTTCACATCC+TGG - chr7_2:25965882-25965901 Msa1054410:intron 40.0%
ACATCCTGGAGTTACGTATA+GGG - chr7_2:25965896-25965915 Msa1054410:intron 40.0%
GGGACTATGAAAGAGTTGAA+AGG - chr7_2:25965952-25965971 Msa1054410:intron 40.0%
TATGAAAGAGTTGAAAGGGC+AGG - chr7_2:25965957-25965976 Msa1054410:intron 40.0%
GAGACAGTTACATGTGGAAA+TGG + chr7_2:25966005-25966024 None:intergenic 40.0%
TGTCTCAGACTGTACTGAAA+GGG - chr7_2:25966019-25966038 Msa1054410:intron 40.0%
AAGACAATCCCGTCAAACAT+AGG - chr7_2:25966255-25966274 Msa1054410:intron 40.0%
CGTCAAACATAGGTTCTGTT+TGG - chr7_2:25966265-25966284 Msa1054410:intron 40.0%
AGTTTCATTCGGTCAGAACA+TGG - chr7_2:25966575-25966594 Msa1054410:CDS 40.0%
GTTTCATTCGGTCAGAACAT+GGG - chr7_2:25966576-25966595 Msa1054410:CDS 40.0%
GCTTATACAGTGTCTTGAAG+CGG - chr7_2:25966739-25966758 Msa1054410:CDS 40.0%
AACACACCCTCATTCTTCAA+TGG - chr7_2:25967143-25967162 Msa1054410:intron 40.0%
ATATGTTTGTATGCAGGGGA+TGG - chr7_2:25967175-25967194 Msa1054410:intron 40.0%
AAATCCTTGTGATATCCGAG+AGG + chr7_2:25967235-25967254 None:intergenic 40.0%
GATTCAATCCGTAGACAGAT+CGG - chr7_2:25967371-25967390 Msa1054410:intron 40.0%
! GACCAATGTTGGTTGAAACA+AGG - chr7_2:25968016-25968035 Msa1054410:intron 40.0%
! CCAATGTTGGTTGAAACAAG+GGG - chr7_2:25968018-25968037 Msa1054410:intron 40.0%
GCAGAGGCAAGAAATTTGGA+GGG + chr7_2:25963170-25963189 None:intergenic 45.0%
TGCAGAGGCAAGAAATTTGG+AGG + chr7_2:25963171-25963190 None:intergenic 45.0%
CCCAGATTATCATTCCAGAG+AGG + chr7_2:25963541-25963560 None:intergenic 45.0%
GCGTACGTAACCAAGTGATT+CGG - chr7_2:25963639-25963658 Msa1054410:three_prime_UTR 45.0%
GTTCGGCTCAAGTGGTTAAT+TGG - chr7_2:25963718-25963737 Msa1054410:three_prime_UTR 45.0%
GAGTTTGAATCCAGGTGGTT+AGG - chr7_2:25963763-25963782 Msa1054410:three_prime_UTR 45.0%
TGCCTGAGTTTGAATCCAAG+TGG - chr7_2:25963820-25963839 Msa1054410:exon 45.0%
!! TCCAAGTGGTTCGGTTTAAG+TGG - chr7_2:25963834-25963853 Msa1054410:CDS 45.0%
ACCACTTAAACCGAACCACT+TGG + chr7_2:25963838-25963857 None:intergenic 45.0%
CTTACCTTATGGCCGAAATC+CGG - chr7_2:25963982-25964001 Msa1054410:CDS 45.0%
TTACCTTATGGCCGAAATCC+GGG - chr7_2:25963983-25964002 Msa1054410:CDS 45.0%
! TAACTCGCTTCTTGCTATGC+AGG - chr7_2:25964096-25964115 Msa1054410:CDS 45.0%
! AACTCGCTTCTTGCTATGCA+GGG - chr7_2:25964097-25964116 Msa1054410:CDS 45.0%
ACGCCACTGTTATTCAGGTA+TGG - chr7_2:25964147-25964166 Msa1054410:intron 45.0%
TGCCTGCCAATAGTTAAGAG+AGG + chr7_2:25964640-25964659 None:intergenic 45.0%
AAATCACCCTTCCACAGAGA+TGG + chr7_2:25964876-25964895 None:intergenic 45.0%
CAAAGTGAATTGTTGGAGGG+GGG - chr7_2:25965071-25965090 Msa1054410:intron 45.0%
! GATTTTGTGCATGAACCTGC+GGG - chr7_2:25965179-25965198 Msa1054410:intron 45.0%
ACGTCAATGAGAGAGTCTGT+TGG - chr7_2:25965594-25965613 Msa1054410:CDS 45.0%
CGTCAATGAGAGAGTCTGTT+GGG - chr7_2:25965595-25965614 Msa1054410:CDS 45.0%
GTCAATGAGAGAGTCTGTTG+GGG - chr7_2:25965596-25965615 Msa1054410:CDS 45.0%
TTGAACTTACTGGCACAGAC+AGG - chr7_2:25965646-25965665 Msa1054410:intron 45.0%
ATGTGGTTACCGCTGAGATT+TGG - chr7_2:25965718-25965737 Msa1054410:CDS 45.0%
CATGTAACCGATGATTCCAG+TGG - chr7_2:25965771-25965790 Msa1054410:intron 45.0%
ATCTTCTATGGCACAACCAC+TGG + chr7_2:25965790-25965809 None:intergenic 45.0%
AATCCCTTATTGTGGAGAGG+CGG + chr7_2:25965818-25965837 None:intergenic 45.0%
GCAAATCCCTTATTGTGGAG+AGG + chr7_2:25965821-25965840 None:intergenic 45.0%
ATTTGCTTTGCAACGTCCTC+AGG - chr7_2:25965835-25965854 Msa1054410:intron 45.0%
TTTGCTTTGCAACGTCCTCA+GGG - chr7_2:25965836-25965855 Msa1054410:intron 45.0%
CACATCCTGGAGTTACGTAT+AGG - chr7_2:25965895-25965914 Msa1054410:intron 45.0%
CTATCCCTATACGTAACTCC+AGG + chr7_2:25965903-25965922 None:intergenic 45.0%
! CAGTCTGAGACAGTTACATG+TGG + chr7_2:25966011-25966030 None:intergenic 45.0%
CTGTCTCAGACTGTACTGAA+AGG - chr7_2:25966018-25966037 Msa1054410:intron 45.0%
ATGGTGTGGTTCAGACAGAA+AGG - chr7_2:25966135-25966154 Msa1054410:intron 45.0%
TGGTTCAGACAGAAAGGACA+GGG - chr7_2:25966141-25966160 Msa1054410:intron 45.0%
CTTATCTCAAGAAGCTCTCC+AGG + chr7_2:25966431-25966450 None:intergenic 45.0%
TAACAGTATATAGGCCGGGT+TGG + chr7_2:25966555-25966574 None:intergenic 45.0%
TTGTGCACAGAAGATCGTGT+AGG - chr7_2:25967206-25967225 Msa1054410:CDS 45.0%
CTTTCACCAAAACCACCTCA+AGG - chr7_2:25967428-25967447 Msa1054410:intron 45.0%
! GTTGTTCCTTGAGGTGGTTT+TGG + chr7_2:25967437-25967456 None:intergenic 45.0%
! CCAATTGTTGTTCCTTGAGG+TGG + chr7_2:25967443-25967462 None:intergenic 45.0%
CCACCTCAAGGAACAACAAT+TGG - chr7_2:25967440-25967459 Msa1054410:intron 45.0%
ATACACAGGAGAGGACGTTT+AGG + chr7_2:25967531-25967550 None:intergenic 45.0%
AGCGAGAATATACACAGGAG+AGG + chr7_2:25967540-25967559 None:intergenic 45.0%
! ATTTTCCTCCCCTTAGCAAG+AGG - chr7_2:25967623-25967642 Msa1054410:intron 45.0%
! TTTTCCTCCCCTTAGCAAGA+GGG - chr7_2:25967624-25967643 Msa1054410:intron 45.0%
! GTTGGTGTAATTTGGAGTCC+TGG - chr7_2:25967862-25967881 Msa1054410:intron 45.0%
! CCCCTTGTTTCAACCAACAT+TGG + chr7_2:25968021-25968040 None:intergenic 45.0%
TGAGGAATATTGCTCGAGTG+CGG - chr7_2:25968062-25968081 Msa1054410:CDS 45.0%
!! GTTTTGGCGAAAGAAGACTC+AGG - chr7_2:25968147-25968166 Msa1054410:five_prime_UTR 45.0%
!! TTGCTGTTTGTGACAGTAGC+AGG - chr7_2:25968320-25968339 Msa1054410:five_prime_UTR 45.0%
!! TATTTATATTATTATTGTTA+TGG - chr7_2:25963357-25963376 Msa1054410:three_prime_UTR 5.0%
!!! TTAGAATTTTTTTATTTTTA+TGG - chr7_2:25963503-25963522 Msa1054410:three_prime_UTR 5.0%
TAGGATCTAATTGGCGGTGG+TGG + chr7_2:25963024-25963043 None:intergenic 50.0%
TAAGGAGGATGAACCCACCT+AGG - chr7_2:25963278-25963297 Msa1054410:three_prime_UTR 50.0%
! ACCAAGTGATTCGGCTCAAG+TGG - chr7_2:25963648-25963667 Msa1054410:three_prime_UTR 50.0%
ACCACTTGAGCCGAATCACT+TGG + chr7_2:25963652-25963671 None:intergenic 50.0%
TCCAGGTGGTTAGGCTTAAG+TGG - chr7_2:25963772-25963791 Msa1054410:three_prime_UTR 50.0%
ACCACTTAAGCCTAACCACC+TGG + chr7_2:25963776-25963795 None:intergenic 50.0%
AATCCCGGATTTCGGCCATA+AGG + chr7_2:25963989-25964008 None:intergenic 50.0%
! GGGCTACTAATCTGGAATCC+CGG + chr7_2:25964004-25964023 None:intergenic 50.0%
TCAGGAAGGGGCTACTAATC+TGG + chr7_2:25964012-25964031 None:intergenic 50.0%
TTAGTAGCCCCTTCCTGAGT+TGG - chr7_2:25964014-25964033 Msa1054410:CDS 50.0%
TAACCCTCCAACTCAGGAAG+GGG + chr7_2:25964024-25964043 None:intergenic 50.0%
CTAACCCTCCAACTCAGGAA+GGG + chr7_2:25964025-25964044 None:intergenic 50.0%
TGTTGCTCCATCTCTGTGGA+AGG - chr7_2:25964866-25964885 Msa1054410:intron 50.0%
GTTGCTCCATCTCTGTGGAA+GGG - chr7_2:25964867-25964886 Msa1054410:intron 50.0%
ATGAACCTGCGGGATTCATC+TGG - chr7_2:25965189-25965208 Msa1054410:CDS 50.0%
GCAGAGATGTTGACCTGATC+TGG - chr7_2:25965419-25965438 Msa1054410:CDS 50.0%
GGCACAACCACTGGAATCAT+CGG + chr7_2:25965781-25965800 None:intergenic 50.0%
ATCCCTTATTGTGGAGAGGC+GGG + chr7_2:25965817-25965836 None:intergenic 50.0%
TTGCTTTGCAACGTCCTCAG+GGG - chr7_2:25965837-25965856 Msa1054410:intron 50.0%
GTGGTTCAGACAGAAAGGAC+AGG - chr7_2:25966140-25966159 Msa1054410:intron 50.0%
GGTTCAGACAGAAAGGACAG+GGG - chr7_2:25966142-25966161 Msa1054410:intron 50.0%
AGAAAGGACAGGGGCTTATC+AGG - chr7_2:25966151-25966170 Msa1054410:intron 50.0%
CATTCGGTCAGAACATGGGT+TGG - chr7_2:25966580-25966599 Msa1054410:CDS 50.0%
!! TGGGTTGGTCTGCTTCAGTT+TGG - chr7_2:25966595-25966614 Msa1054410:intron 50.0%
!! GGGTTGGTCTGCTTCAGTTT+GGG - chr7_2:25966596-25966615 Msa1054410:intron 50.0%
TGGCTTTCCCATAAGCTCAG+AGG - chr7_2:25966703-25966722 Msa1054410:intron 50.0%
CTCTCAGCCTCTGAGCTTAT+GGG + chr7_2:25966713-25966732 None:intergenic 50.0%
TCTCTCAGCCTCTGAGCTTA+TGG + chr7_2:25966714-25966733 None:intergenic 50.0%
GTCTTGAAGCGGCAATTGAG+AGG - chr7_2:25966750-25966769 Msa1054410:CDS 50.0%
TTGAAGCGGCAATTGAGAGG+CGG - chr7_2:25966753-25966772 Msa1054410:CDS 50.0%
AGATCGTGTAGGACTCCTCT+CGG - chr7_2:25967217-25967236 Msa1054410:CDS 50.0%
GACTCCTCTCGGATATCACA+AGG - chr7_2:25967228-25967247 Msa1054410:intron 50.0%
TTTCCTCCCCTTAGCAAGAG+GGG - chr7_2:25967625-25967644 Msa1054410:intron 50.0%
TTCCAAGCCCCTCTTGCTAA+GGG + chr7_2:25967635-25967654 None:intergenic 50.0%
ATTCCAAGCCCCTCTTGCTA+AGG + chr7_2:25967636-25967655 None:intergenic 50.0%
GAGGAATATTGCTCGAGTGC+GGG - chr7_2:25968063-25968082 Msa1054410:CDS 50.0%
ATGGAATGAGGCTGCTAGAG+TGG - chr7_2:25968237-25968256 Msa1054410:five_prime_UTR 50.0%
AGAGTGGAGCAGTGTTCACA+TGG - chr7_2:25968253-25968272 Msa1054410:five_prime_UTR 50.0%
! TCCAAGTGGTTCGGCTCAAG+TGG - chr7_2:25963710-25963729 Msa1054410:three_prime_UTR 55.0%
ACCACTTGAGCCGAACCACT+TGG + chr7_2:25963714-25963733 None:intergenic 55.0%
! TCCAAGTGGTTCGGCTCAAG+TGG - chr7_2:25963710-25963729 Msa1054410:three_prime_UTR 55.0%
ACCACTTGAGCCGAACCACT+TGG + chr7_2:25963714-25963733 None:intergenic 55.0%
! TAGCCCCTTCCTGAGTTGGA+GGG - chr7_2:25964018-25964037 Msa1054410:CDS 55.0%
CCTAACCCTCCAACTCAGGA+AGG + chr7_2:25964026-25964045 None:intergenic 55.0%
! CCTTCCTGAGTTGGAGGGTT+AGG - chr7_2:25964023-25964042 Msa1054410:CDS 55.0%
TGGTCCTAACCCTCCAACTC+AGG + chr7_2:25964030-25964049 None:intergenic 55.0%
!! TGTCGGTGTCGTGACGTTGT+CGG + chr7_2:25964354-25964373 None:intergenic 55.0%
TACGGACACCGAACACGACA+CGG + chr7_2:25964433-25964452 None:intergenic 55.0%
CGGTAACCACATTGCAGCGA+AGG + chr7_2:25965710-25965729 None:intergenic 55.0%
CTTATTGTGGAGAGGCGGGA+CGG + chr7_2:25965813-25965832 None:intergenic 55.0%
GTCCCGCCTCTCCACAATAA+GGG - chr7_2:25965812-25965831 Msa1054410:intron 55.0%
TGCTTTGCAACGTCCTCAGG+GGG - chr7_2:25965838-25965857 Msa1054410:intron 55.0%
GCTCAGAGGCTGAGAGAGAA+CGG - chr7_2:25966717-25966736 Msa1054410:intron 55.0%
TGAAGCGGCAATTGAGAGGC+GGG - chr7_2:25966754-25966773 Msa1054410:CDS 55.0%
AATTGAGAGGCGGGCATCTG+AGG - chr7_2:25966763-25966782 Msa1054410:CDS 55.0%
GCACAATGCCTCGCTCTTTG+AGG - chr7_2:25966812-25966831 Msa1054410:CDS 55.0%
CTTAACGGCCTCAAAGAGCG+AGG + chr7_2:25966823-25966842 None:intergenic 55.0%
TTGTATGCAGGGGATGGAGC+TGG - chr7_2:25967181-25967200 Msa1054410:intron 55.0%
CTGTGTCGCCGATCTGTCTA+CGG + chr7_2:25967382-25967401 None:intergenic 55.0%
TCCAAGCCCCTCTTGCTAAG+GGG + chr7_2:25967634-25967653 None:intergenic 55.0%
CGAGCTGCGTACATGGAATG+AGG - chr7_2:25968225-25968244 Msa1054410:five_prime_UTR 55.0%
! GTAGCCCCTTCCTGAGTTGG+AGG - chr7_2:25964017-25964036 Msa1054410:CDS 60.0%
GCAGACCAGATGAATCCCGC+AGG + chr7_2:25965197-25965216 None:intergenic 60.0%
CTTACTGGCACAGACAGGCC+TGG - chr7_2:25965651-25965670 Msa1054410:intron 60.0%
CGCAGACCTTCGCTGCAATG+TGG - chr7_2:25965701-25965720 Msa1054410:CDS 60.0%
GAGGCGGGACGGATCTTCTA+TGG + chr7_2:25965802-25965821 None:intergenic 60.0%
CGTCCCGCCTCTCCACAATA+AGG - chr7_2:25965811-25965830 Msa1054410:intron 60.0%
TCGGATCATCACTCCCCCTG+AGG + chr7_2:25965854-25965873 None:intergenic 60.0%
!! GAGCGAGGCATTGTGCTTCC+AGG + chr7_2:25966808-25966827 None:intergenic 60.0%
GATCGGCGACACAGTACTGC+AGG - chr7_2:25967388-25967407 Msa1054410:intron 60.0%
AAGCCCCTCTTGCTAAGGGG+AGG + chr7_2:25967631-25967650 None:intergenic 60.0%
TCCCCTTAGCAAGAGGGGCT+TGG - chr7_2:25967630-25967649 Msa1054410:intron 60.0%
GCAGCTCGACCAGCATTCGA+AGG + chr7_2:25968213-25968232 None:intergenic 60.0%
TGCTGGTCGAGCTGCGTACA+TGG - chr7_2:25968218-25968237 Msa1054410:five_prime_UTR 60.0%
CGGCGTGTCCGTGTCGTGTT+CGG - chr7_2:25964422-25964441 Msa1054410:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 25962978 25968376 25962978 ID=Msa1054410;Name=Msa1054410
chr7_2 mRNA 25962978 25968376 25962978 ID=Msa1054410-mRNA-1;Parent=Msa1054410;Name=Msa1054410-mRNA-1;_AED=0.16;_eAED=0.16;_QI=275|0.75|0.66|1|0.75|0.66|9|844|430
chr7_2 exon 25962978 25964163 25962978 ID=Msa1054410-mRNA-1:exon:5612;Parent=Msa1054410-mRNA-1
chr7_2 exon 25964570 25964674 25964570 ID=Msa1054410-mRNA-1:exon:5611;Parent=Msa1054410-mRNA-1
chr7_2 exon 25965182 25965401 25965182 ID=Msa1054410-mRNA-1:exon:5610;Parent=Msa1054410-mRNA-1
chr7_2 exon 25965414 25965657 25965414 ID=Msa1054410-mRNA-1:exon:5609;Parent=Msa1054410-mRNA-1
chr7_2 exon 25965682 25965787 25965682 ID=Msa1054410-mRNA-1:exon:5608;Parent=Msa1054410-mRNA-1
chr7_2 exon 25966542 25966609 25966542 ID=Msa1054410-mRNA-1:exon:5607;Parent=Msa1054410-mRNA-1
chr7_2 exon 25966725 25966839 25966725 ID=Msa1054410-mRNA-1:exon:5606;Parent=Msa1054410-mRNA-1
chr7_2 exon 25967191 25967236 25967191 ID=Msa1054410-mRNA-1:exon:5605;Parent=Msa1054410-mRNA-1
chr7_2 exon 25968055 25968376 25968055 ID=Msa1054410-mRNA-1:exon:5604;Parent=Msa1054410-mRNA-1
chr7_2 five_prime_UTR 25968102 25968376 25968102 ID=Msa1054410-mRNA-1:five_prime_utr;Parent=Msa1054410-mRNA-1
chr7_2 CDS 25968055 25968101 25968055 ID=Msa1054410-mRNA-1:cds;Parent=Msa1054410-mRNA-1
chr7_2 CDS 25967191 25967236 25967191 ID=Msa1054410-mRNA-1:cds;Parent=Msa1054410-mRNA-1
chr7_2 CDS 25966725 25966839 25966725 ID=Msa1054410-mRNA-1:cds;Parent=Msa1054410-mRNA-1
chr7_2 CDS 25966542 25966609 25966542 ID=Msa1054410-mRNA-1:cds;Parent=Msa1054410-mRNA-1
chr7_2 CDS 25965682 25965787 25965682 ID=Msa1054410-mRNA-1:cds;Parent=Msa1054410-mRNA-1
chr7_2 CDS 25965414 25965657 25965414 ID=Msa1054410-mRNA-1:cds;Parent=Msa1054410-mRNA-1
chr7_2 CDS 25965182 25965401 25965182 ID=Msa1054410-mRNA-1:cds;Parent=Msa1054410-mRNA-1
chr7_2 CDS 25964570 25964674 25964570 ID=Msa1054410-mRNA-1:cds;Parent=Msa1054410-mRNA-1
chr7_2 CDS 25963822 25964163 25963822 ID=Msa1054410-mRNA-1:cds;Parent=Msa1054410-mRNA-1
chr7_2 three_prime_UTR 25962978 25963821 25962978 ID=Msa1054410-mRNA-1:three_prime_utr;Parent=Msa1054410-mRNA-1
Gene Sequence

>Msa1054410

ATGGATGATGAATATGCGAAGCTTATAAGGAGGATGAACCCACCTAGGGTTGTGATTGATAATAATGCATGTGAAAACGCCACTGTTATTCAGGTTGACAGTGTAAACAAACACGGGATACTCTTGGATGTAGTCCAAGTTATTTCAGATATGAACCTTGTGATTAAAAAGGCTTATATTTCCTCTGATGGAGTTTGGTTTATGGATGTGTTTAATGTGACGGATCGAAATGGAAACAAGATCAAAGATAAAGAAGTCATTGATTATATTCAGAGGAGACTTGAAAAGAATCCGAGCTTTGAAACGTCAATGAGAGAGTCTGTTGGGGTTGTACCTACTGAAGAACACACTGTTATTGAACTTACTGGCACAGACAGGCCTGTTCTCGCAGACCTTCGCTGCAATGTGGTTACCGCTGAGATTTGGACGCATAATACTAGAGCTGCAGCCGTAGTTCATGTAACCGATGATTCCAGTGGTTGTGCCATAGAAGATCCGTCCCGCCTCTCCACAATAAGGGATTTGCTTTGCAACGTCCTCAGGGGGAGTGATGATCCGAAGACAGCAAAAACTGCACTTTCACATCCTGGAGTTACGTATAGGGATAGAAGATTACATCAGATTATGGACTATGAAAGAGTTGAAAGGGCAGGACTTAGAGAAAGAGATAAAGGTCCATTTCCACATGTAACTGTCTCAGACTGTACTGAAAGGGATTATACTGTGGTTATCATGAGAGCGAAAGATCGACCGAAGCTGTTGTTTGATATTGTTTGCACTTTAACTGACATGCAGTATGTAGTTTTTCATGGTGTGGTTCAGACAGAAAGGACAGGGGCTTATCAGGAGTTTTATATTCGGCACGTTGATGGCTTTCCCATAAGCTCAGAGGCTGAGAGAGAACGGCTTATACAGTGTCTTGAAGCGGCAATTGAGAGGCGGGCATCTGAGGGGATGGAGCTGGAATTGTGCACAGAAGATCGTGTAGGACTCCTCTCGGATATCACAAGGATTTTCCGCGAGAACAGTTTATGTATCAAAAGAGCAGAAATATCAACAGAAAACGGGAAGGCAAAAGACACCTTTTACGTCACTGATGTAACTGGTAACCCAGTTGATCCAAAGATTATTGATTCAATCCGTAGACAGATCGGCGACACAGTACTGCAGGTGAAACATAACTCTAGTCTTTCACCAAAACCACCTCAAGGAACAACAATTGGATTTCTCTTTGGAAGTTTTTTCAAGGCTCGATCTTTTCAGAATTTTAAGTTGATCAAATCATATTCCTAA

Protein sequence

>Msa1054410

MDDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVIKKAYISSDGVWFMDVFNVTDRNGNKIKDKEVIDYIQRRLEKNPSFETSMRESVGVVPTEEHTVIELTGTDRPVLADLRCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIEDPSRLSTIRDLLCNVLRGSDDPKTAKTALSHPGVTYRDRRLHQIMDYERVERAGLRERDKGPFPHVTVSDCTERDYTVVIMRAKDRPKLLFDIVCTLTDMQYVVFHGVVQTERTGAYQEFYIRHVDGFPISSEAERERLIQCLEAAIERRASEGMELELCTEDRVGLLSDITRIFRENSLCIKRAEISTENGKAKDTFYVTDVTGNPVDPKIIDSIRRQIGDTVLQVKHNSSLSPKPPQGTTIGFLFGSFFKARSFQNFKLIKSYS*