AlfalfaGEDB | Msa1054410

M. sativa cultivar zhongmu-4 / Msa1054410

KEGG: -
GO: GO:0003674 GO:0005488 GO:0006355 GO:0006464 GO:0006807 GO:0006808 GO:0007154 GO:0007584 GO:0008150 GO:0008152 GO:0009605 GO:0009719 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016597 GO:0018175 GO:0018177 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031406 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0036094 GO:0036211 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043177 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071417 GO:0071495 GO:0071496 GO:0071704 GO:0080090 GO:0090293 GO:1901564 GO:1901698 GO:1901699 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
PFAM: PF01842.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1054410	XP_003622131.1	96.833	442	2	2	1	430	1	442	0.0	871

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1054410	sp\|Q9SGA0\|ACR6_ARATH	66.590	437	120	8	2	418	3	433	0.0	559

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1054410	G7L275	96.833	442	2	2	1	430	1	442	0.0	871

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006700	Msa1054410	0.804238	2.377990e-49	-8.615850e-47
Msa0013050	Msa1054410	-0.807047	6.115608e-50	-8.615850e-47
Msa0014410	Msa1054410	0.801807	7.565824e-49	-8.615850e-47
Msa0015100	Msa1054410	0.857226	1.885926e-62	-8.615850e-47
Msa0021740	Msa1054410	0.815343	9.705522e-52	-8.615850e-47
Msa0029850	Msa1054410	0.803147	4.005034e-49	-8.615850e-47
Msa0036160	Msa1054410	0.803860	2.849867e-49	-8.615850e-47
Msa0039330	Msa1054410	0.839301	1.719916e-57	-8.615850e-47
Msa0040580	Msa1054410	0.808151	3.565505e-50	-8.615850e-47
Msa0042980	Msa1054410	-0.858806	6.396711e-63	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1054410	MtrunA17_Chr7g0224571	96.833	442	2	2	1	430	1	442	0.0	871
Msa1054410	MtrunA17_Chr5g0420221	57.919	442	167	6	1	430	17	451	0.0	511
Msa1054410	MtrunA17_Chr7g0222461	54.018	448	182	7	1	430	10	451	1.59e-159	457
Msa1054410	MtrunA17_Chr4g0056741	47.748	444	206	5	3	430	8	441	1.91e-137	401
Msa1054410	MtrunA17_Chr5g0398581	47.991	448	199	7	3	430	8	441	2.29e-137	400
Msa1054410	MtrunA17_Chr1g0159541	46.517	445	215	9	1	423	9	452	2.55e-129	380
Msa1054410	MtrunA17_Chr3g0125661	46.727	443	211	10	1	423	9	446	2.81e-128	378
Msa1054410	MtrunA17_Chr5g0400941	40.618	421	216	7	1	388	9	428	4.54e-104	317
Msa1054410	MtrunA17_Chr4g0054261	36.653	472	255	8	1	428	28	499	3.37e-91	284

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1054410	AT3G01990.7	66.590	437	120	8	2	418	17	447	0.0	560
Msa1054410	AT3G01990.5	66.590	437	120	8	2	418	17	447	0.0	560
Msa1054410	AT3G01990.10	66.590	437	120	8	2	418	3	433	0.0	559
Msa1054410	AT3G01990.1	66.590	437	120	8	2	418	3	433	0.0	559
Msa1054410	AT3G01990.6	70.781	397	97	6	2	385	17	407	0.0	552
Msa1054410	AT3G01990.11	70.781	397	97	6	2	385	3	393	0.0	551
Msa1054410	AT1G69040.2	60.179	447	159	6	1	430	11	455	0.0	539
Msa1054410	AT1G69040.1	60.179	447	159	6	1	430	7	451	0.0	539
Msa1054410	AT2G03730.2	56.444	450	170	8	1	428	11	456	1.74e-168	481
Msa1054410	AT2G03730.1	56.444	450	170	8	1	428	11	456	1.74e-168	481

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Find 148 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGCACTTTCACATCC+TGG	0.532657	7_2:-25965450	Msa1054410:CDS
AAACAAACACGGGATACTCT+TGG	0.470655	7_2:-25966806	Msa1054410:CDS
AAACATTATTATTGATGTTT+TGG	0.250496	7_2:-25963201	Msa1054410:three_prime_UTR
AAATCCTTGTGATATCCGAG+AGG	0.755556	7_2:+25964100	None:intergenic
AACACAGATTCACATTTACC+AGG	0.561464	7_2:+25963452	None:intergenic
AAGAAATTCTCCCACAACTA+AGG	0.463575	7_2:+25968208	None:intergenic
AAGAATAAATATTACCTAGG+TGG	0.560958	7_2:+25968040	None:intergenic
AAGAGTGAAGAAATATGCAG+AGG	0.669263	7_2:+25968149	None:intergenic
AAGCCATACCTGAATAACAG+TGG	0.722877	7_2:+25967182	None:intergenic
AAGCCCCTCTTGCTAAGGGG+AGG	0.630008	7_2:+25963704	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAAAAGTGAAGTAGGTAAG+TGG	+	chr7_2:25963083-25963102	None:intergenic	30.0%
ATGAATATGCGAAGCTTATA+AGG	-	chr7_2:25963260-25963279	Msa1054410:three_prime_UTR	30.0%
TACGTACGCATATTCATATA+TGG	+	chr7_2:25963628-25963647	None:intergenic	30.0%
TTAATGAGCTTGAATCGATT+TGG	-	chr7_2:25963671-25963690	Msa1054410:three_prime_UTR	30.0%
AGTAAAAATTGTTCCAACTC+AGG	+	chr7_2:25963954-25963973	None:intergenic	30.0%
ACTTGACTTTACTTACCTTA+TGG	-	chr7_2:25963971-25963990	Msa1054410:CDS	30.0%
ATATGTTTGTGTTGGAATTG+TGG	-	chr7_2:25964064-25964083	Msa1054410:CDS	30.0%
TGTTTCATAGATTGCAATCA+AGG	+	chr7_2:25964296-25964315	None:intergenic	30.0%
CTTCTGATCCAAGTATTAAT+TGG	-	chr7_2:25964704-25964723	Msa1054410:intron	30.0%
ATTGATTATATTCAGAGGGT+AGG	-	chr7_2:25964795-25964814	Msa1054410:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	25962978	25968376	25962978	ID=Msa1054410;Name=Msa1054410
chr7_2	mRNA	25962978	25968376	25962978	ID=Msa1054410-mRNA-1;Parent=Msa1054410;Name=Msa1054410-mRNA-1;_AED=0.16;_eAED=0.16;_QI=275\|0.75\|0.66\|1\|0.75\|0.66\|9\|844\|430
chr7_2	exon	25962978	25964163	25962978	ID=Msa1054410-mRNA-1:exon:5612;Parent=Msa1054410-mRNA-1
chr7_2	exon	25964570	25964674	25964570	ID=Msa1054410-mRNA-1:exon:5611;Parent=Msa1054410-mRNA-1
chr7_2	exon	25965182	25965401	25965182	ID=Msa1054410-mRNA-1:exon:5610;Parent=Msa1054410-mRNA-1
chr7_2	exon	25965414	25965657	25965414	ID=Msa1054410-mRNA-1:exon:5609;Parent=Msa1054410-mRNA-1
chr7_2	exon	25965682	25965787	25965682	ID=Msa1054410-mRNA-1:exon:5608;Parent=Msa1054410-mRNA-1
chr7_2	exon	25966542	25966609	25966542	ID=Msa1054410-mRNA-1:exon:5607;Parent=Msa1054410-mRNA-1
chr7_2	exon	25966725	25966839	25966725	ID=Msa1054410-mRNA-1:exon:5606;Parent=Msa1054410-mRNA-1
chr7_2	exon	25967191	25967236	25967191	ID=Msa1054410-mRNA-1:exon:5605;Parent=Msa1054410-mRNA-1
chr7_2	exon	25968055	25968376	25968055	ID=Msa1054410-mRNA-1:exon:5604;Parent=Msa1054410-mRNA-1
chr7_2	five_prime_UTR	25968102	25968376	25968102	ID=Msa1054410-mRNA-1:five_prime_utr;Parent=Msa1054410-mRNA-1
chr7_2	CDS	25968055	25968101	25968055	ID=Msa1054410-mRNA-1:cds;Parent=Msa1054410-mRNA-1
chr7_2	CDS	25967191	25967236	25967191	ID=Msa1054410-mRNA-1:cds;Parent=Msa1054410-mRNA-1
chr7_2	CDS	25966725	25966839	25966725	ID=Msa1054410-mRNA-1:cds;Parent=Msa1054410-mRNA-1
chr7_2	CDS	25966542	25966609	25966542	ID=Msa1054410-mRNA-1:cds;Parent=Msa1054410-mRNA-1
chr7_2	CDS	25965682	25965787	25965682	ID=Msa1054410-mRNA-1:cds;Parent=Msa1054410-mRNA-1
chr7_2	CDS	25965414	25965657	25965414	ID=Msa1054410-mRNA-1:cds;Parent=Msa1054410-mRNA-1
chr7_2	CDS	25965182	25965401	25965182	ID=Msa1054410-mRNA-1:cds;Parent=Msa1054410-mRNA-1
chr7_2	CDS	25964570	25964674	25964570	ID=Msa1054410-mRNA-1:cds;Parent=Msa1054410-mRNA-1
chr7_2	CDS	25963822	25964163	25963822	ID=Msa1054410-mRNA-1:cds;Parent=Msa1054410-mRNA-1
chr7_2	three_prime_UTR	25962978	25963821	25962978	ID=Msa1054410-mRNA-1:three_prime_utr;Parent=Msa1054410-mRNA-1

Gene Sequence

>Msa1054410

ATGGATGATGAATATGCGAAGCTTATAAGGAGGATGAACCCACCTAGGGTTGTGATTGATAATAATGCATGTGAAAACGCCACTGTTATTCAGGTTGACAGTGTAAACAAACACGGGATACTCTTGGATGTAGTCCAAGTTATTTCAGATATGAACCTTGTGATTAAAAAGGCTTATATTTCCTCTGATGGAGTTTGGTTTATGGATGTGTTTAATGTGACGGATCGAAATGGAAACAAGATCAAAGATAAAGAAGTCATTGATTATATTCAGAGGAGACTTGAAAAGAATCCGAGCTTTGAAACGTCAATGAGAGAGTCTGTTGGGGTTGTACCTACTGAAGAACACACTGTTATTGAACTTACTGGCACAGACAGGCCTGTTCTCGCAGACCTTCGCTGCAATGTGGTTACCGCTGAGATTTGGACGCATAATACTAGAGCTGCAGCCGTAGTTCATGTAACCGATGATTCCAGTGGTTGTGCCATAGAAGATCCGTCCCGCCTCTCCACAATAAGGGATTTGCTTTGCAACGTCCTCAGGGGGAGTGATGATCCGAAGACAGCAAAAACTGCACTTTCACATCCTGGAGTTACGTATAGGGATAGAAGATTACATCAGATTATGGACTATGAAAGAGTTGAAAGGGCAGGACTTAGAGAAAGAGATAAAGGTCCATTTCCACATGTAACTGTCTCAGACTGTACTGAAAGGGATTATACTGTGGTTATCATGAGAGCGAAAGATCGACCGAAGCTGTTGTTTGATATTGTTTGCACTTTAACTGACATGCAGTATGTAGTTTTTCATGGTGTGGTTCAGACAGAAAGGACAGGGGCTTATCAGGAGTTTTATATTCGGCACGTTGATGGCTTTCCCATAAGCTCAGAGGCTGAGAGAGAACGGCTTATACAGTGTCTTGAAGCGGCAATTGAGAGGCGGGCATCTGAGGGGATGGAGCTGGAATTGTGCACAGAAGATCGTGTAGGACTCCTCTCGGATATCACAAGGATTTTCCGCGAGAACAGTTTATGTATCAAAAGAGCAGAAATATCAACAGAAAACGGGAAGGCAAAAGACACCTTTTACGTCACTGATGTAACTGGTAACCCAGTTGATCCAAAGATTATTGATTCAATCCGTAGACAGATCGGCGACACAGTACTGCAGGTGAAACATAACTCTAGTCTTTCACCAAAACCACCTCAAGGAACAACAATTGGATTTCTCTTTGGAAGTTTTTTCAAGGCTCGATCTTTTCAGAATTTTAAGTTGATCAAATCATATTCCTAA

Protein sequence

>Msa1054410

MDDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVIKKAYISSDGVWFMDVFNVTDRNGNKIKDKEVIDYIQRRLEKNPSFETSMRESVGVVPTEEHTVIELTGTDRPVLADLRCNVVTAEIWTHNTRAAAVVHVTDDSSGCAIEDPSRLSTIRDLLCNVLRGSDDPKTAKTALSHPGVTYRDRRLHQIMDYERVERAGLRERDKGPFPHVTVSDCTERDYTVVIMRAKDRPKLLFDIVCTLTDMQYVVFHGVVQTERTGAYQEFYIRHVDGFPISSEAERERLIQCLEAAIERRASEGMELELCTEDRVGLLSDITRIFRENSLCIKRAEISTENGKAKDTFYVTDVTGNPVDPKIIDSIRRQIGDTVLQVKHNSSLSPKPPQGTTIGFLFGSFFKARSFQNFKLIKSYS*