AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0468130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0468130 MtrunA17_Chr3g0122361 84.694 196 18 3 1 195 1 185 1.36e-114 323
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0468130 AT1G27300.1 34.146 205 100 7 1 185 1 190 4.67e-21 86.7

Find 73 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCATTCCTTTCCGAAATT+TGG 0.127733 3_3:-69631041 None:intergenic
TTATATTGAAAAGTTAATTA+AGG 0.217773 3_3:+69631120 Msa0468130:three_prime_UTR
ACACAAGAGACGTGCCTTAT+TGG 0.220983 3_3:-69630238 None:intergenic
CAATAAGTATGAAATCTTTA+AGG 0.247081 3_3:+69631265 Msa0468130:three_prime_UTR
ATTCAGTTTCGTGGTCTTTA+AGG 0.248448 3_3:-69630443 None:intergenic
ATACTCCCAACGGATCTAAA+TGG 0.272675 3_3:-69630897 None:intergenic
AGATTTCTCTCCGGCGGTTA+TGG 0.300517 3_3:+69630338 Msa0468130:exon
ACATCCATGTTGGTCATATC+TGG 0.303699 3_3:-69631017 None:intergenic
GCAGAAGCCACCTGCTTTGA+AGG 0.325878 3_3:-69630672 None:intergenic
TATATTGAAAAGTTAATTAA+GGG 0.344507 3_3:+69631121 Msa0468130:three_prime_UTR
AACATGGATGTACCAAATTT+CGG 0.350139 3_3:+69631029 Msa0468130:CDS
CAACAAACCGCAAGCCAATA+AGG 0.352087 3_3:+69630224 Msa0468130:five_prime_UTR
GATAATCAAAGAGCTGAAAA+AGG 0.382164 3_3:+69630758 Msa0468130:CDS
TTGACACAATTACACAGAAA+TGG 0.390159 3_3:-69631204 None:intergenic
TGGAGTGGGAAAGTGCTTTG+TGG 0.411080 3_3:-69630175 None:intergenic
CGGCGGTTATGGAGCAAGAT+AGG 0.419703 3_3:+69630349 Msa0468130:exon
GGCGGATCTATGTGTATGTA+TGG 0.424621 3_3:+69631323 Msa0468130:three_prime_UTR
ACTATATGCCACTTTCCTCT+TGG 0.437773 3_3:-69630195 None:intergenic
CCACCTACTCTCTGTCTCTC+AGG 0.446309 3_3:+69630482 Msa0468130:CDS
TGTTTCTAGCAGCCATGGTC+AGG 0.446396 3_3:+69630941 Msa0468130:CDS
TACGCAAATGCCACTAGAAA+AGG 0.452114 3_3:-69631240 None:intergenic
GTTGATCATCCACTCTCAAT+TGG 0.453754 3_3:+69631084 Msa0468130:three_prime_UTR
CTTTGAAGGACTAGATGCTT+CGG 0.454664 3_3:-69630658 None:intergenic
TTAACAAATAAACACATTTG+TGG 0.471559 3_3:-69631402 None:intergenic
TACTCCCAACGGATCTAAAT+GGG 0.474977 3_3:-69630896 None:intergenic
AACCACCCATTTAGATCCGT+TGG 0.484895 3_3:+69630891 Msa0468130:CDS
TTCTGTGTAATTGTGTCAAA+AGG 0.489385 3_3:+69631208 Msa0468130:three_prime_UTR
TAGCAGTTGGAAATGTCTAA+AGG 0.502031 3_3:+69630615 Msa0468130:intron
ACCACCCATTTAGATCCGTT+GGG 0.504389 3_3:+69630892 Msa0468130:CDS
TCTGCAATTGAGAAAACAAA+AGG 0.510878 3_3:+69630690 Msa0468130:CDS
CCTGAGAGACAGAGAGTAGG+TGG 0.533620 3_3:-69630482 None:intergenic
AGCATCTAGTCCTTCAAAGC+AGG 0.533942 3_3:+69630662 Msa0468130:CDS
TGCCACTTTCCTCTTGGAGT+GGG 0.534992 3_3:-69630189 None:intergenic
TGATTGTCCTCACTGTGGCT+TGG 0.535081 3_3:+69630823 Msa0468130:CDS
CTTAAGAGAAGGAAGAGATG+TGG 0.542676 3_3:-69630991 None:intergenic
AGGATGCATGGGAAGTGAAA+AGG 0.545731 3_3:+69630731 Msa0468130:CDS
TGAATGAACATTACAAGCAA+TGG 0.550335 3_3:-69631170 None:intergenic
AAGGACTAGATGCTTCGGAT+TGG 0.550420 3_3:-69630653 None:intergenic
GAAATTTGGTACATCCATGT+TGG 0.556305 3_3:-69631027 None:intergenic
TGTCATCAGCATCCTGACCA+TGG 0.563700 3_3:-69630953 None:intergenic
CTCTTTGAACATACTCCCAA+CGG 0.567570 3_3:-69630907 None:intergenic
CTATCTTGCTCCATAACCGC+CGG 0.572297 3_3:-69630348 None:intergenic
TGTGGCTTGGCAACTATCAG+AGG 0.572775 3_3:+69630836 Msa0468130:CDS
AGACGTGCCTTATTGGCTTG+CGG 0.572930 3_3:-69630231 None:intergenic
ATGCCACTTTCCTCTTGGAG+TGG 0.573912 3_3:-69630190 None:intergenic
AAAGGTGAAACTGTGGATGA+TGG 0.574054 3_3:+69630708 Msa0468130:CDS
AAAGATGTTTCTAGCAGCCA+TGG 0.580571 3_3:+69630936 Msa0468130:CDS
TGTGGATGATGGAGGATGCA+TGG 0.587950 3_3:+69630719 Msa0468130:CDS
CAAGCTCAACCAATTGAGAG+TGG 0.595449 3_3:-69631093 None:intergenic
TTCCCACTCCAAGAGGAAAG+TGG 0.599596 3_3:+69630187 Msa0468130:five_prime_UTR
TCTAAAGAAAGATTTCTCTC+CGG 0.599830 3_3:+69630329 Msa0468130:five_prime_UTR
ATATCTGGAATCTTAAGAGA+AGG 0.599963 3_3:-69631002 None:intergenic
GTGGATGATGGAGGATGCAT+GGG 0.603480 3_3:+69630720 Msa0468130:CDS
CGGTTATGGAGCAAGATAGG+AGG 0.604157 3_3:+69630352 Msa0468130:exon
AGAAGAGCCAGAAGGTAGAG+TGG 0.606334 3_3:+69631302 Msa0468130:intron
ATCTAGTCCTTCAAAGCAGG+TGG 0.612263 3_3:+69630665 Msa0468130:CDS
AAAGAAAGATTTCTCTCCGG+CGG 0.617911 3_3:+69630332 Msa0468130:five_prime_UTR
GGATGTACCAAATTTCGGAA+AGG 0.619495 3_3:+69631034 Msa0468130:CDS
CTTGTGATGAGAGTGAAGGA+TGG 0.629930 3_3:+69630864 Msa0468130:CDS
AAGCACTTTCCCACTCCAAG+AGG 0.629931 3_3:+69630180 Msa0468130:five_prime_UTR
AGCAATGATTGTCCTCACTG+TGG 0.630188 3_3:+69630818 Msa0468130:CDS
GGTGAAACTGTGGATGATGG+AGG 0.632117 3_3:+69630711 Msa0468130:CDS
CTGAGAGACAGAGAGTAGGT+GGG 0.637959 3_3:-69630481 None:intergenic
TGTGTAATTGTGTCAAAAGG+TGG 0.653758 3_3:+69631211 Msa0468130:three_prime_UTR
GATTCCAGATATGACCAACA+TGG 0.664463 3_3:+69631013 Msa0468130:CDS
GCGGATCTATGTGTATGTAT+GGG 0.668444 3_3:+69631324 Msa0468130:three_prime_UTR
TCCCAACGGATCTAAATGGG+TGG 0.668953 3_3:-69630893 None:intergenic
AGAGCCAGAAGGTAGAGTGG+CGG 0.672315 3_3:+69631305 Msa0468130:intron
GAAAACAAAAGGTGAAACTG+TGG 0.678024 3_3:+69630701 Msa0468130:CDS
GTACCTGAGAGACAGAGAGT+AGG 0.684915 3_3:-69630485 None:intergenic
TTCACTTGTGATGAGAGTGA+AGG 0.685850 3_3:+69630860 Msa0468130:CDS
CAGTTGGAAATGTCTAAAGG+AGG 0.689175 3_3:+69630618 Msa0468130:CDS
ATAGTTGCCAAGCCACAGTG+AGG 0.743956 3_3:-69630830 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTGAAAAGTTAATTA+AGG + chr3_3:69631120-69631139 Msa0468130:three_prime_UTR 10.0%
!! TATATTGAAAAGTTAATTAA+GGG + chr3_3:69631121-69631140 Msa0468130:three_prime_UTR 10.0%
!! TTATATTGAAAAGTTAATTA+AGG + chr3_3:69631120-69631139 Msa0468130:three_prime_UTR 10.0%
!! TATATTGAAAAGTTAATTAA+GGG + chr3_3:69631121-69631140 Msa0468130:three_prime_UTR 10.0%
!!! AAATTTTCATTTTCTTTAAG+TGG + chr3_3:69631062-69631081 Msa0468130:three_prime_UTR 15.0%
!!! CTTAAAACAATAATATTTTC+TGG - chr3_3:69631354-69631373 None:intergenic 15.0%
!!! AAATTTTCATTTTCTTTAAG+TGG + chr3_3:69631062-69631081 Msa0468130:three_prime_UTR 15.0%
!!! CTTAAAACAATAATATTTTC+TGG - chr3_3:69631354-69631373 None:intergenic 15.0%
!!! TATTTTATTGGATAATCGAA+AGG - chr3_3:69630277-69630296 None:intergenic 20.0%
!! CAATAAGTATGAAATCTTTA+AGG + chr3_3:69631265-69631284 Msa0468130:three_prime_UTR 20.0%
!! TTAACAAATAAACACATTTG+TGG - chr3_3:69631405-69631424 None:intergenic 20.0%
!!! TATTTTATTGGATAATCGAA+AGG - chr3_3:69630277-69630296 None:intergenic 20.0%
!! CAATAAGTATGAAATCTTTA+AGG + chr3_3:69631265-69631284 Msa0468130:three_prime_UTR 20.0%
!! TTAACAAATAAACACATTTG+TGG - chr3_3:69631405-69631424 None:intergenic 20.0%
!! CAATAAAATAGAGCTTTTAG+CGG + chr3_3:69630287-69630306 Msa0468130:five_prime_UTR 25.0%
!!! GAATATGTTTTTGAATTGCT+TGG - chr3_3:69630392-69630411 None:intergenic 25.0%
!! CAATTTGATTTATTAGCAGT+TGG + chr3_3:69630602-69630621 Msa0468130:intron 25.0%
!! CAATAAAATAGAGCTTTTAG+CGG + chr3_3:69630287-69630306 Msa0468130:five_prime_UTR 25.0%
!!! GAATATGTTTTTGAATTGCT+TGG - chr3_3:69630392-69630411 None:intergenic 25.0%
!! CAATTTGATTTATTAGCAGT+TGG + chr3_3:69630602-69630621 Msa0468130:intron 25.0%
! CGCTAAAAGCTCTATTTTAT+TGG - chr3_3:69630289-69630308 None:intergenic 30.0%
TCTAAAGAAAGATTTCTCTC+CGG + chr3_3:69630329-69630348 Msa0468130:five_prime_UTR 30.0%
TCTGCAATTGAGAAAACAAA+AGG + chr3_3:69630690-69630709 Msa0468130:CDS 30.0%
GATAATCAAAGAGCTGAAAA+AGG + chr3_3:69630758-69630777 Msa0468130:CDS 30.0%
! ATATCTGGAATCTTAAGAGA+AGG - chr3_3:69631005-69631024 None:intergenic 30.0%
AACATGGATGTACCAAATTT+CGG + chr3_3:69631029-69631048 Msa0468130:CDS 30.0%
TTTCATTCCTTTCCGAAATT+TGG - chr3_3:69631044-69631063 None:intergenic 30.0%
TGAATGAACATTACAAGCAA+TGG - chr3_3:69631173-69631192 None:intergenic 30.0%
TTGACACAATTACACAGAAA+TGG - chr3_3:69631207-69631226 None:intergenic 30.0%
TTCTGTGTAATTGTGTCAAA+AGG + chr3_3:69631208-69631227 Msa0468130:three_prime_UTR 30.0%
! CGCTAAAAGCTCTATTTTAT+TGG - chr3_3:69630289-69630308 None:intergenic 30.0%
TCTAAAGAAAGATTTCTCTC+CGG + chr3_3:69630329-69630348 Msa0468130:five_prime_UTR 30.0%
TCTGCAATTGAGAAAACAAA+AGG + chr3_3:69630690-69630709 Msa0468130:CDS 30.0%
GATAATCAAAGAGCTGAAAA+AGG + chr3_3:69630758-69630777 Msa0468130:CDS 30.0%
! ATATCTGGAATCTTAAGAGA+AGG - chr3_3:69631005-69631024 None:intergenic 30.0%
AACATGGATGTACCAAATTT+CGG + chr3_3:69631029-69631048 Msa0468130:CDS 30.0%
TTTCATTCCTTTCCGAAATT+TGG - chr3_3:69631044-69631063 None:intergenic 30.0%
TGAATGAACATTACAAGCAA+TGG - chr3_3:69631173-69631192 None:intergenic 30.0%
TTGACACAATTACACAGAAA+TGG - chr3_3:69631207-69631226 None:intergenic 30.0%
TTCTGTGTAATTGTGTCAAA+AGG + chr3_3:69631208-69631227 Msa0468130:three_prime_UTR 30.0%
! TAAAATAGAGCTTTTAGCGG+TGG + chr3_3:69630290-69630309 Msa0468130:five_prime_UTR 35.0%
! AAAATAGAGCTTTTAGCGGT+GGG + chr3_3:69630291-69630310 Msa0468130:five_prime_UTR 35.0%
ATTCAGTTTCGTGGTCTTTA+AGG - chr3_3:69630446-69630465 None:intergenic 35.0%
!! CTTTTTGGTATTCAGTTTCG+TGG - chr3_3:69630455-69630474 None:intergenic 35.0%
TAGCAGTTGGAAATGTCTAA+AGG + chr3_3:69630615-69630634 Msa0468130:intron 35.0%
GAAAACAAAAGGTGAAACTG+TGG + chr3_3:69630701-69630720 Msa0468130:CDS 35.0%
GAAATTTGGTACATCCATGT+TGG - chr3_3:69631030-69631049 None:intergenic 35.0%
TGTGTAATTGTGTCAAAAGG+TGG + chr3_3:69631211-69631230 Msa0468130:three_prime_UTR 35.0%
AAGAAAGTCAAACGATATCC+AGG + chr3_3:69631439-69631458 Msa0468130:three_prime_UTR 35.0%
! TAAAATAGAGCTTTTAGCGG+TGG + chr3_3:69630290-69630309 Msa0468130:five_prime_UTR 35.0%
! AAAATAGAGCTTTTAGCGGT+GGG + chr3_3:69630291-69630310 Msa0468130:five_prime_UTR 35.0%
ATTCAGTTTCGTGGTCTTTA+AGG - chr3_3:69630446-69630465 None:intergenic 35.0%
!! CTTTTTGGTATTCAGTTTCG+TGG - chr3_3:69630455-69630474 None:intergenic 35.0%
TAGCAGTTGGAAATGTCTAA+AGG + chr3_3:69630615-69630634 Msa0468130:intron 35.0%
GAAAACAAAAGGTGAAACTG+TGG + chr3_3:69630701-69630720 Msa0468130:CDS 35.0%
GAAATTTGGTACATCCATGT+TGG - chr3_3:69631030-69631049 None:intergenic 35.0%
TGTGTAATTGTGTCAAAAGG+TGG + chr3_3:69631211-69631230 Msa0468130:three_prime_UTR 35.0%
!! ACTATATGCCACTTTCCTCT+TGG - chr3_3:69630198-69630217 None:intergenic 40.0%
AAAGAAAGATTTCTCTCCGG+CGG + chr3_3:69630332-69630351 Msa0468130:five_prime_UTR 40.0%
CAGTTGGAAATGTCTAAAGG+AGG + chr3_3:69630618-69630637 Msa0468130:CDS 40.0%
! CTTTGAAGGACTAGATGCTT+CGG - chr3_3:69630661-69630680 None:intergenic 40.0%
AAAGGTGAAACTGTGGATGA+TGG + chr3_3:69630708-69630727 Msa0468130:CDS 40.0%
TTCACTTGTGATGAGAGTGA+AGG + chr3_3:69630860-69630879 Msa0468130:CDS 40.0%
TACTCCCAACGGATCTAAAT+GGG - chr3_3:69630899-69630918 None:intergenic 40.0%
ATACTCCCAACGGATCTAAA+TGG - chr3_3:69630900-69630919 None:intergenic 40.0%
CTCTTTGAACATACTCCCAA+CGG - chr3_3:69630910-69630929 None:intergenic 40.0%
!! AAAGATGTTTCTAGCAGCCA+TGG + chr3_3:69630936-69630955 Msa0468130:CDS 40.0%
CTTAAGAGAAGGAAGAGATG+TGG - chr3_3:69630994-69631013 None:intergenic 40.0%
GATTCCAGATATGACCAACA+TGG + chr3_3:69631013-69631032 Msa0468130:CDS 40.0%
ACATCCATGTTGGTCATATC+TGG - chr3_3:69631020-69631039 None:intergenic 40.0%
GGATGTACCAAATTTCGGAA+AGG + chr3_3:69631034-69631053 Msa0468130:CDS 40.0%
GTTGATCATCCACTCTCAAT+TGG + chr3_3:69631084-69631103 Msa0468130:three_prime_UTR 40.0%
! GTGGTAGTTACCTTTTCTAG+TGG + chr3_3:69631230-69631249 Msa0468130:three_prime_UTR 40.0%
TACGCAAATGCCACTAGAAA+AGG - chr3_3:69631243-69631262 None:intergenic 40.0%
GCGGATCTATGTGTATGTAT+GGG + chr3_3:69631324-69631343 Msa0468130:three_prime_UTR 40.0%
!! ACTATATGCCACTTTCCTCT+TGG - chr3_3:69630198-69630217 None:intergenic 40.0%
AAAGAAAGATTTCTCTCCGG+CGG + chr3_3:69630332-69630351 Msa0468130:five_prime_UTR 40.0%
CAGTTGGAAATGTCTAAAGG+AGG + chr3_3:69630618-69630637 Msa0468130:CDS 40.0%
! CTTTGAAGGACTAGATGCTT+CGG - chr3_3:69630661-69630680 None:intergenic 40.0%
AAAGGTGAAACTGTGGATGA+TGG + chr3_3:69630708-69630727 Msa0468130:CDS 40.0%
TTCACTTGTGATGAGAGTGA+AGG + chr3_3:69630860-69630879 Msa0468130:CDS 40.0%
TACTCCCAACGGATCTAAAT+GGG - chr3_3:69630899-69630918 None:intergenic 40.0%
ATACTCCCAACGGATCTAAA+TGG - chr3_3:69630900-69630919 None:intergenic 40.0%
CTCTTTGAACATACTCCCAA+CGG - chr3_3:69630910-69630929 None:intergenic 40.0%
!! AAAGATGTTTCTAGCAGCCA+TGG + chr3_3:69630936-69630955 Msa0468130:CDS 40.0%
CTTAAGAGAAGGAAGAGATG+TGG - chr3_3:69630994-69631013 None:intergenic 40.0%
GATTCCAGATATGACCAACA+TGG + chr3_3:69631013-69631032 Msa0468130:CDS 40.0%
ACATCCATGTTGGTCATATC+TGG - chr3_3:69631020-69631039 None:intergenic 40.0%
GGATGTACCAAATTTCGGAA+AGG + chr3_3:69631034-69631053 Msa0468130:CDS 40.0%
GTTGATCATCCACTCTCAAT+TGG + chr3_3:69631084-69631103 Msa0468130:three_prime_UTR 40.0%
! GTGGTAGTTACCTTTTCTAG+TGG + chr3_3:69631230-69631249 Msa0468130:three_prime_UTR 40.0%
TACGCAAATGCCACTAGAAA+AGG - chr3_3:69631243-69631262 None:intergenic 40.0%
GCGGATCTATGTGTATGTAT+GGG + chr3_3:69631324-69631343 Msa0468130:three_prime_UTR 40.0%
CAACAAACCGCAAGCCAATA+AGG + chr3_3:69630224-69630243 Msa0468130:five_prime_UTR 45.0%
ACACAAGAGACGTGCCTTAT+TGG - chr3_3:69630241-69630260 None:intergenic 45.0%
AAGGACTAGATGCTTCGGAT+TGG - chr3_3:69630656-69630675 None:intergenic 45.0%
AGCATCTAGTCCTTCAAAGC+AGG + chr3_3:69630662-69630681 Msa0468130:CDS 45.0%
ATCTAGTCCTTCAAAGCAGG+TGG + chr3_3:69630665-69630684 Msa0468130:CDS 45.0%
AGGATGCATGGGAAGTGAAA+AGG + chr3_3:69630731-69630750 Msa0468130:CDS 45.0%
AGCAATGATTGTCCTCACTG+TGG + chr3_3:69630818-69630837 Msa0468130:CDS 45.0%
CTTGTGATGAGAGTGAAGGA+TGG + chr3_3:69630864-69630883 Msa0468130:CDS 45.0%
AACCACCCATTTAGATCCGT+TGG + chr3_3:69630891-69630910 Msa0468130:CDS 45.0%
ACCACCCATTTAGATCCGTT+GGG + chr3_3:69630892-69630911 Msa0468130:CDS 45.0%
CAAGCTCAACCAATTGAGAG+TGG - chr3_3:69631096-69631115 None:intergenic 45.0%
GGCGGATCTATGTGTATGTA+TGG + chr3_3:69631323-69631342 Msa0468130:three_prime_UTR 45.0%
CAACAAACCGCAAGCCAATA+AGG + chr3_3:69630224-69630243 Msa0468130:five_prime_UTR 45.0%
ACACAAGAGACGTGCCTTAT+TGG - chr3_3:69630241-69630260 None:intergenic 45.0%
AAGGACTAGATGCTTCGGAT+TGG - chr3_3:69630656-69630675 None:intergenic 45.0%
AGCATCTAGTCCTTCAAAGC+AGG + chr3_3:69630662-69630681 Msa0468130:CDS 45.0%
ATCTAGTCCTTCAAAGCAGG+TGG + chr3_3:69630665-69630684 Msa0468130:CDS 45.0%
AGGATGCATGGGAAGTGAAA+AGG + chr3_3:69630731-69630750 Msa0468130:CDS 45.0%
AGCAATGATTGTCCTCACTG+TGG + chr3_3:69630818-69630837 Msa0468130:CDS 45.0%
CTTGTGATGAGAGTGAAGGA+TGG + chr3_3:69630864-69630883 Msa0468130:CDS 45.0%
AACCACCCATTTAGATCCGT+TGG + chr3_3:69630891-69630910 Msa0468130:CDS 45.0%
ACCACCCATTTAGATCCGTT+GGG + chr3_3:69630892-69630911 Msa0468130:CDS 45.0%
CAAGCTCAACCAATTGAGAG+TGG - chr3_3:69631096-69631115 None:intergenic 45.0%
GGCGGATCTATGTGTATGTA+TGG + chr3_3:69631323-69631342 Msa0468130:three_prime_UTR 45.0%
!! TGGAGTGGGAAAGTGCTTTG+TGG - chr3_3:69630178-69630197 None:intergenic 50.0%
AAGCACTTTCCCACTCCAAG+AGG + chr3_3:69630180-69630199 Msa0468130:five_prime_UTR 50.0%
TTCCCACTCCAAGAGGAAAG+TGG + chr3_3:69630187-69630206 Msa0468130:five_prime_UTR 50.0%
!! TGCCACTTTCCTCTTGGAGT+GGG - chr3_3:69630192-69630211 None:intergenic 50.0%
!! ATGCCACTTTCCTCTTGGAG+TGG - chr3_3:69630193-69630212 None:intergenic 50.0%
!! AGACGTGCCTTATTGGCTTG+CGG - chr3_3:69630234-69630253 None:intergenic 50.0%
! TAGAGCTTTTAGCGGTGGGT+CGG + chr3_3:69630295-69630314 Msa0468130:five_prime_UTR 50.0%
AGATTTCTCTCCGGCGGTTA+TGG + chr3_3:69630338-69630357 Msa0468130:exon 50.0%
CTATCTTGCTCCATAACCGC+CGG - chr3_3:69630351-69630370 None:intergenic 50.0%
CGGTTATGGAGCAAGATAGG+AGG + chr3_3:69630352-69630371 Msa0468130:exon 50.0%
! GTAGGTGGGAGAGAGCTTTT+TGG - chr3_3:69630470-69630489 None:intergenic 50.0%
CTGAGAGACAGAGAGTAGGT+GGG - chr3_3:69630484-69630503 None:intergenic 50.0%
GTACCTGAGAGACAGAGAGT+AGG - chr3_3:69630488-69630507 None:intergenic 50.0%
! GGTGAAACTGTGGATGATGG+AGG + chr3_3:69630711-69630730 Msa0468130:CDS 50.0%
!! TGTGGATGATGGAGGATGCA+TGG + chr3_3:69630719-69630738 Msa0468130:CDS 50.0%
!! GTGGATGATGGAGGATGCAT+GGG + chr3_3:69630720-69630739 Msa0468130:CDS 50.0%
TGATTGTCCTCACTGTGGCT+TGG + chr3_3:69630823-69630842 Msa0468130:CDS 50.0%
ATAGTTGCCAAGCCACAGTG+AGG - chr3_3:69630833-69630852 None:intergenic 50.0%
! TGTGGCTTGGCAACTATCAG+AGG + chr3_3:69630836-69630855 Msa0468130:CDS 50.0%
TCCCAACGGATCTAAATGGG+TGG - chr3_3:69630896-69630915 None:intergenic 50.0%
!! TGTTTCTAGCAGCCATGGTC+AGG + chr3_3:69630941-69630960 Msa0468130:CDS 50.0%
TGTCATCAGCATCCTGACCA+TGG - chr3_3:69630956-69630975 None:intergenic 50.0%
GTTAGCACAGAAGAGCCAGA+AGG + chr3_3:69631294-69631313 Msa0468130:intron 50.0%
AGAAGAGCCAGAAGGTAGAG+TGG + chr3_3:69631302-69631321 Msa0468130:intron 50.0%
AGTGCTTTGTGGACCTTTCC+TGG - chr3_3:69630167-69630186 None:intergenic 50.0%
!! TGGAGTGGGAAAGTGCTTTG+TGG - chr3_3:69630178-69630197 None:intergenic 50.0%
AAGCACTTTCCCACTCCAAG+AGG + chr3_3:69630180-69630199 Msa0468130:five_prime_UTR 50.0%
TTCCCACTCCAAGAGGAAAG+TGG + chr3_3:69630187-69630206 Msa0468130:five_prime_UTR 50.0%
!! TGCCACTTTCCTCTTGGAGT+GGG - chr3_3:69630192-69630211 None:intergenic 50.0%
!! ATGCCACTTTCCTCTTGGAG+TGG - chr3_3:69630193-69630212 None:intergenic 50.0%
!! AGACGTGCCTTATTGGCTTG+CGG - chr3_3:69630234-69630253 None:intergenic 50.0%
! TAGAGCTTTTAGCGGTGGGT+CGG + chr3_3:69630295-69630314 Msa0468130:five_prime_UTR 50.0%
AGATTTCTCTCCGGCGGTTA+TGG + chr3_3:69630338-69630357 Msa0468130:exon 50.0%
CTATCTTGCTCCATAACCGC+CGG - chr3_3:69630351-69630370 None:intergenic 50.0%
CGGTTATGGAGCAAGATAGG+AGG + chr3_3:69630352-69630371 Msa0468130:exon 50.0%
! GTAGGTGGGAGAGAGCTTTT+TGG - chr3_3:69630470-69630489 None:intergenic 50.0%
CTGAGAGACAGAGAGTAGGT+GGG - chr3_3:69630484-69630503 None:intergenic 50.0%
GTACCTGAGAGACAGAGAGT+AGG - chr3_3:69630488-69630507 None:intergenic 50.0%
! GGTGAAACTGTGGATGATGG+AGG + chr3_3:69630711-69630730 Msa0468130:CDS 50.0%
!! TGTGGATGATGGAGGATGCA+TGG + chr3_3:69630719-69630738 Msa0468130:CDS 50.0%
!! GTGGATGATGGAGGATGCAT+GGG + chr3_3:69630720-69630739 Msa0468130:CDS 50.0%
TGATTGTCCTCACTGTGGCT+TGG + chr3_3:69630823-69630842 Msa0468130:CDS 50.0%
ATAGTTGCCAAGCCACAGTG+AGG - chr3_3:69630833-69630852 None:intergenic 50.0%
! TGTGGCTTGGCAACTATCAG+AGG + chr3_3:69630836-69630855 Msa0468130:CDS 50.0%
TCCCAACGGATCTAAATGGG+TGG - chr3_3:69630896-69630915 None:intergenic 50.0%
!! TGTTTCTAGCAGCCATGGTC+AGG + chr3_3:69630941-69630960 Msa0468130:CDS 50.0%
TGTCATCAGCATCCTGACCA+TGG - chr3_3:69630956-69630975 None:intergenic 50.0%
GTTAGCACAGAAGAGCCAGA+AGG + chr3_3:69631294-69631313 Msa0468130:intron 50.0%
AGAAGAGCCAGAAGGTAGAG+TGG + chr3_3:69631302-69631321 Msa0468130:intron 50.0%
CGGCGGTTATGGAGCAAGAT+AGG + chr3_3:69630349-69630368 Msa0468130:exon 55.0%
CCTGAGAGACAGAGAGTAGG+TGG - chr3_3:69630485-69630504 None:intergenic 55.0%
CCACCTACTCTCTGTCTCTC+AGG + chr3_3:69630482-69630501 Msa0468130:CDS 55.0%
GCAGAAGCCACCTGCTTTGA+AGG - chr3_3:69630675-69630694 None:intergenic 55.0%
AGAGCCAGAAGGTAGAGTGG+CGG + chr3_3:69631305-69631324 Msa0468130:intron 55.0%
AGATCCGCCACTCTACCTTC+TGG - chr3_3:69631312-69631331 None:intergenic 55.0%
CGGCGGTTATGGAGCAAGAT+AGG + chr3_3:69630349-69630368 Msa0468130:exon 55.0%
CCTGAGAGACAGAGAGTAGG+TGG - chr3_3:69630485-69630504 None:intergenic 55.0%
CCACCTACTCTCTGTCTCTC+AGG + chr3_3:69630482-69630501 Msa0468130:CDS 55.0%
GCAGAAGCCACCTGCTTTGA+AGG - chr3_3:69630675-69630694 None:intergenic 55.0%
AGAGCCAGAAGGTAGAGTGG+CGG + chr3_3:69631305-69631324 Msa0468130:intron 55.0%
AGATCCGCCACTCTACCTTC+TGG - chr3_3:69631312-69631331 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 69630167 69631459 69630167 ID=Msa0468130;Name=Msa0468130
chr3_3 mRNA 69630167 69631459 69630167 ID=Msa0468130-mRNA-1;Parent=Msa0468130;Name=Msa0468130-mRNA-1;_AED=0.05;_eAED=0.05;_QI=190|1|1|1|0.5|0.33|3|371|196
chr3_3 exon 69630167 69630503 69630167 ID=Msa0468130-mRNA-1:exon:16504;Parent=Msa0468130-mRNA-1
chr3_3 exon 69630618 69631288 69630618 ID=Msa0468130-mRNA-1:exon:16505;Parent=Msa0468130-mRNA-1
chr3_3 exon 69631316 69631459 69631316 ID=Msa0468130-mRNA-1:exon:16506;Parent=Msa0468130-mRNA-1
chr3_3 five_prime_UTR 69630167 69630356 69630167 ID=Msa0468130-mRNA-1:five_prime_utr;Parent=Msa0468130-mRNA-1
chr3_3 CDS 69630357 69630503 69630357 ID=Msa0468130-mRNA-1:cds;Parent=Msa0468130-mRNA-1
chr3_3 CDS 69630618 69631061 69630618 ID=Msa0468130-mRNA-1:cds;Parent=Msa0468130-mRNA-1
chr3_3 three_prime_UTR 69631062 69631288 69631062 ID=Msa0468130-mRNA-1:three_prime_utr;Parent=Msa0468130-mRNA-1
chr3_3 three_prime_UTR 69631316 69631459 69631316 ID=Msa0468130-mRNA-1:three_prime_utr;Parent=Msa0468130-mRNA-1
Gene Sequence

>Msa0468130

ATGGAGCAAGATAGGAGGCTTGAACTCATCGACCAAGCAATTCAAAAACATATTCATAACAAAAGTGACAATAATAATAATCATAACCTTAAAGACCACGAAACTGAATACCAAAAAGCTCTCTCCCACCTACTCTCTGTCTCTCAGCAGTTGGAAATGTCTAAAGGAGGTGAAACAGTTAACCAATCCGAAGCATCTAGTCCTTCAAAGCAGGTGGCTTCTGCAATTGAGAAAACAAAAGGTGAAACTGTGGATGATGGAGGATGCATGGGAAGTGAAAAGGATGAGATAATCAAAGAGCTGAAAAAGGTGAAGAAGCAGAATTTTGTGACTCATTGTCTTCTTTCAGCAATGATTGTCCTCACTGTGGCTTGGCAACTATCAGAGGTTTCACTTGTGATGAGAGTGAAGGATGGAATAAACCACCCATTTAGATCCGTTGGGAGTATGTTCAAAGAGATAGTGAAAGATGTTTCTAGCAGCCATGGTCAGGATGCTGATGACAAAGAAAACAATGAATCCACATCTCTTCCTTCTCTTAAGATTCCAGATATGACCAACATGGATGTACCAAATTTCGGAAAGGAATGA

Protein sequence

>Msa0468130

MEQDRRLELIDQAIQKHIHNKSDNNNNHNLKDHETEYQKALSHLLSVSQQLEMSKGGETVNQSEASSPSKQVASAIEKTKGETVDDGGCMGSEKDEIIKELKKVKKQNFVTHCLLSAMIVLTVAWQLSEVSLVMRVKDGINHPFRSVGSMFKEIVKDVSSSHGQDADDKENNESTSLPSLKIPDMTNMDVPNFGKE*