AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1307740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1307740 MtrunA17_Chr3g0122361 84.694 196 18 3 1 195 1 185 1.36e-114 323
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1307740 AT1G27300.1 34.146 205 100 7 1 185 1 190 4.67e-21 86.7

Find 73 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCATTCCTTTCCGAAATT+TGG 0.127733 8_4:+3655755 None:intergenic
TTATATTGAAAAGTTAATTA+AGG 0.217773 8_4:-3655676 Msa1307740:three_prime_UTR
ACACAAGAGACGTGCCTTAT+TGG 0.220983 8_4:+3656558 None:intergenic
CAATAAGTATGAAATCTTTA+AGG 0.247081 8_4:-3655531 Msa1307740:three_prime_UTR
ATTCAGTTTCGTGGTCTTTA+AGG 0.248448 8_4:+3656353 None:intergenic
ATACTCCCAACGGATCTAAA+TGG 0.272675 8_4:+3655899 None:intergenic
AGATTTCTCTCCGGCGGTTA+TGG 0.300517 8_4:-3656458 Msa1307740:exon
ACATCCATGTTGGTCATATC+TGG 0.303699 8_4:+3655779 None:intergenic
GCAGAAGCCACCTGCTTTGA+AGG 0.325878 8_4:+3656124 None:intergenic
TATATTGAAAAGTTAATTAA+GGG 0.344507 8_4:-3655675 Msa1307740:three_prime_UTR
AACATGGATGTACCAAATTT+CGG 0.350139 8_4:-3655767 Msa1307740:CDS
CAACAAACCGCAAGCCAATA+AGG 0.352087 8_4:-3656572 Msa1307740:five_prime_UTR
GATAATCAAAGAGCTGAAAA+AGG 0.382164 8_4:-3656038 Msa1307740:CDS
TTGACACAATTACACAGAAA+TGG 0.390159 8_4:+3655592 None:intergenic
TGGAGTGGGAAAGTGCTTTG+TGG 0.411080 8_4:+3656621 None:intergenic
CGGCGGTTATGGAGCAAGAT+AGG 0.419703 8_4:-3656447 Msa1307740:exon
GGCGGATCTATGTGTATGTA+TGG 0.424621 8_4:-3655473 Msa1307740:three_prime_UTR
ACTATATGCCACTTTCCTCT+TGG 0.437773 8_4:+3656601 None:intergenic
CCACCTACTCTCTGTCTCTC+AGG 0.446309 8_4:-3656314 Msa1307740:intron
TGTTTCTAGCAGCCATGGTC+AGG 0.446396 8_4:-3655855 Msa1307740:CDS
TACGCAAATGCCACTAGAAA+AGG 0.452114 8_4:+3655556 None:intergenic
GTTGATCATCCACTCTCAAT+TGG 0.453754 8_4:-3655712 Msa1307740:three_prime_UTR
CTTTGAAGGACTAGATGCTT+CGG 0.454664 8_4:+3656138 None:intergenic
TTAACAAATAAACACATTTG+TGG 0.471559 8_4:+3655394 None:intergenic
TACTCCCAACGGATCTAAAT+GGG 0.474977 8_4:+3655900 None:intergenic
AACCACCCATTTAGATCCGT+TGG 0.484895 8_4:-3655905 Msa1307740:CDS
TTCTGTGTAATTGTGTCAAA+AGG 0.489385 8_4:-3655588 Msa1307740:three_prime_UTR
TAGCAGTTGGAAATGTCTAA+AGG 0.502031 8_4:-3656181 Msa1307740:CDS
ACCACCCATTTAGATCCGTT+GGG 0.504389 8_4:-3655904 Msa1307740:CDS
TCTGCAATTGAGAAAACAAA+AGG 0.510878 8_4:-3656106 Msa1307740:CDS
CCTGAGAGACAGAGAGTAGG+TGG 0.533620 8_4:+3656314 None:intergenic
AGCATCTAGTCCTTCAAAGC+AGG 0.533942 8_4:-3656134 Msa1307740:CDS
TGCCACTTTCCTCTTGGAGT+GGG 0.534992 8_4:+3656607 None:intergenic
TGATTGTCCTCACTGTGGCT+TGG 0.535081 8_4:-3655973 Msa1307740:CDS
CTTAAGAGAAGGAAGAGATG+TGG 0.542676 8_4:+3655805 None:intergenic
AGGATGCATGGGAAGTGAAA+AGG 0.545731 8_4:-3656065 Msa1307740:CDS
TGAATGAACATTACAAGCAA+TGG 0.550335 8_4:+3655626 None:intergenic
AAGGACTAGATGCTTCGGAT+TGG 0.550420 8_4:+3656143 None:intergenic
GAAATTTGGTACATCCATGT+TGG 0.556305 8_4:+3655769 None:intergenic
TGTCATCAGCATCCTGACCA+TGG 0.563700 8_4:+3655843 None:intergenic
CTCTTTGAACATACTCCCAA+CGG 0.567570 8_4:+3655889 None:intergenic
CTATCTTGCTCCATAACCGC+CGG 0.572297 8_4:+3656448 None:intergenic
TGTGGCTTGGCAACTATCAG+AGG 0.572775 8_4:-3655960 Msa1307740:CDS
AGACGTGCCTTATTGGCTTG+CGG 0.572930 8_4:+3656565 None:intergenic
ATGCCACTTTCCTCTTGGAG+TGG 0.573912 8_4:+3656606 None:intergenic
AAAGGTGAAACTGTGGATGA+TGG 0.574054 8_4:-3656088 Msa1307740:CDS
AAAGATGTTTCTAGCAGCCA+TGG 0.580571 8_4:-3655860 Msa1307740:CDS
TGTGGATGATGGAGGATGCA+TGG 0.587950 8_4:-3656077 Msa1307740:CDS
CAAGCTCAACCAATTGAGAG+TGG 0.595449 8_4:+3655703 None:intergenic
TTCCCACTCCAAGAGGAAAG+TGG 0.599596 8_4:-3656609 Msa1307740:five_prime_UTR
TCTAAAGAAAGATTTCTCTC+CGG 0.599830 8_4:-3656467 Msa1307740:five_prime_UTR
ATATCTGGAATCTTAAGAGA+AGG 0.599963 8_4:+3655794 None:intergenic
GTGGATGATGGAGGATGCAT+GGG 0.603480 8_4:-3656076 Msa1307740:CDS
CGGTTATGGAGCAAGATAGG+AGG 0.604157 8_4:-3656444 Msa1307740:exon
AGAAGAGCCAGAAGGTAGAG+TGG 0.606334 8_4:-3655494 Msa1307740:intron
ATCTAGTCCTTCAAAGCAGG+TGG 0.612263 8_4:-3656131 Msa1307740:CDS
AAAGAAAGATTTCTCTCCGG+CGG 0.617911 8_4:-3656464 Msa1307740:five_prime_UTR
GGATGTACCAAATTTCGGAA+AGG 0.619495 8_4:-3655762 Msa1307740:CDS
CTTGTGATGAGAGTGAAGGA+TGG 0.629930 8_4:-3655932 Msa1307740:CDS
AAGCACTTTCCCACTCCAAG+AGG 0.629931 8_4:-3656616 Msa1307740:five_prime_UTR
AGCAATGATTGTCCTCACTG+TGG 0.630188 8_4:-3655978 Msa1307740:CDS
GGTGAAACTGTGGATGATGG+AGG 0.632117 8_4:-3656085 Msa1307740:CDS
CTGAGAGACAGAGAGTAGGT+GGG 0.637959 8_4:+3656315 None:intergenic
TGTGTAATTGTGTCAAAAGG+TGG 0.653758 8_4:-3655585 Msa1307740:three_prime_UTR
GATTCCAGATATGACCAACA+TGG 0.664463 8_4:-3655783 Msa1307740:CDS
GCGGATCTATGTGTATGTAT+GGG 0.668444 8_4:-3655472 Msa1307740:three_prime_UTR
TCCCAACGGATCTAAATGGG+TGG 0.668953 8_4:+3655903 None:intergenic
AGAGCCAGAAGGTAGAGTGG+CGG 0.672315 8_4:-3655491 Msa1307740:intron
GAAAACAAAAGGTGAAACTG+TGG 0.678024 8_4:-3656095 Msa1307740:CDS
GTACCTGAGAGACAGAGAGT+AGG 0.684915 8_4:+3656311 None:intergenic
TTCACTTGTGATGAGAGTGA+AGG 0.685850 8_4:-3655936 Msa1307740:CDS
CAGTTGGAAATGTCTAAAGG+AGG 0.689175 8_4:-3656178 Msa1307740:CDS
ATAGTTGCCAAGCCACAGTG+AGG 0.743956 8_4:+3655966 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATTGAAAAGTTAATTA+AGG - chr8_4:3656312-3656331 Msa1307740:intron 10.0%
!! TATATTGAAAAGTTAATTAA+GGG - chr8_4:3656313-3656332 Msa1307740:intron 10.0%
!! TTATATTGAAAAGTTAATTA+AGG - chr8_4:3656312-3656331 Msa1307740:intron 10.0%
!! TATATTGAAAAGTTAATTAA+GGG - chr8_4:3656313-3656332 Msa1307740:intron 10.0%
!!! AAATTTTCATTTTCTTTAAG+TGG - chr8_4:3656254-3656273 Msa1307740:intron 15.0%
!!! CTTAAAACAATAATATTTTC+TGG + chr8_4:3656546-3656565 None:intergenic 15.0%
!!! AAATTTTCATTTTCTTTAAG+TGG - chr8_4:3656254-3656273 Msa1307740:intron 15.0%
!!! CTTAAAACAATAATATTTTC+TGG + chr8_4:3656546-3656565 None:intergenic 15.0%
!!! TATTTTATTGGATAATCGAA+AGG + chr8_4:3655469-3655488 None:intergenic 20.0%
!! CAATAAGTATGAAATCTTTA+AGG - chr8_4:3656457-3656476 Msa1307740:exon 20.0%
!! TTAACAAATAAACACATTTG+TGG + chr8_4:3656597-3656616 None:intergenic 20.0%
!!! TATTTTATTGGATAATCGAA+AGG + chr8_4:3655469-3655488 None:intergenic 20.0%
!! CAATAAGTATGAAATCTTTA+AGG - chr8_4:3656457-3656476 Msa1307740:exon 20.0%
!! TTAACAAATAAACACATTTG+TGG + chr8_4:3656597-3656616 None:intergenic 20.0%
!! CAATAAAATAGAGCTTTTAG+CGG - chr8_4:3655479-3655498 Msa1307740:three_prime_UTR 25.0%
!!! GAATATGTTTTTGAATTGCT+TGG + chr8_4:3655584-3655603 None:intergenic 25.0%
!! CAATTTGATTTATTAGCAGT+TGG - chr8_4:3655794-3655813 Msa1307740:CDS 25.0%
!! CAATAAAATAGAGCTTTTAG+CGG - chr8_4:3655479-3655498 Msa1307740:three_prime_UTR 25.0%
!!! GAATATGTTTTTGAATTGCT+TGG + chr8_4:3655584-3655603 None:intergenic 25.0%
!! CAATTTGATTTATTAGCAGT+TGG - chr8_4:3655794-3655813 Msa1307740:CDS 25.0%
! CGCTAAAAGCTCTATTTTAT+TGG + chr8_4:3655481-3655500 None:intergenic 30.0%
TCTAAAGAAAGATTTCTCTC+CGG - chr8_4:3655521-3655540 Msa1307740:intron 30.0%
TCTGCAATTGAGAAAACAAA+AGG - chr8_4:3655882-3655901 Msa1307740:CDS 30.0%
GATAATCAAAGAGCTGAAAA+AGG - chr8_4:3655950-3655969 Msa1307740:CDS 30.0%
! ATATCTGGAATCTTAAGAGA+AGG + chr8_4:3656197-3656216 None:intergenic 30.0%
AACATGGATGTACCAAATTT+CGG - chr8_4:3656221-3656240 Msa1307740:intron 30.0%
TTTCATTCCTTTCCGAAATT+TGG + chr8_4:3656236-3656255 None:intergenic 30.0%
TGAATGAACATTACAAGCAA+TGG + chr8_4:3656365-3656384 None:intergenic 30.0%
TTGACACAATTACACAGAAA+TGG + chr8_4:3656399-3656418 None:intergenic 30.0%
TTCTGTGTAATTGTGTCAAA+AGG - chr8_4:3656400-3656419 Msa1307740:CDS 30.0%
! CGCTAAAAGCTCTATTTTAT+TGG + chr8_4:3655481-3655500 None:intergenic 30.0%
TCTAAAGAAAGATTTCTCTC+CGG - chr8_4:3655521-3655540 Msa1307740:intron 30.0%
TCTGCAATTGAGAAAACAAA+AGG - chr8_4:3655882-3655901 Msa1307740:CDS 30.0%
GATAATCAAAGAGCTGAAAA+AGG - chr8_4:3655950-3655969 Msa1307740:CDS 30.0%
! ATATCTGGAATCTTAAGAGA+AGG + chr8_4:3656197-3656216 None:intergenic 30.0%
AACATGGATGTACCAAATTT+CGG - chr8_4:3656221-3656240 Msa1307740:intron 30.0%
TTTCATTCCTTTCCGAAATT+TGG + chr8_4:3656236-3656255 None:intergenic 30.0%
TGAATGAACATTACAAGCAA+TGG + chr8_4:3656365-3656384 None:intergenic 30.0%
TTGACACAATTACACAGAAA+TGG + chr8_4:3656399-3656418 None:intergenic 30.0%
TTCTGTGTAATTGTGTCAAA+AGG - chr8_4:3656400-3656419 Msa1307740:CDS 30.0%
! TAAAATAGAGCTTTTAGCGG+TGG - chr8_4:3655482-3655501 Msa1307740:three_prime_UTR 35.0%
! AAAATAGAGCTTTTAGCGGT+GGG - chr8_4:3655483-3655502 Msa1307740:three_prime_UTR 35.0%
ATTCAGTTTCGTGGTCTTTA+AGG + chr8_4:3655638-3655657 None:intergenic 35.0%
!! CTTTTTGGTATTCAGTTTCG+TGG + chr8_4:3655647-3655666 None:intergenic 35.0%
TAGCAGTTGGAAATGTCTAA+AGG - chr8_4:3655807-3655826 Msa1307740:CDS 35.0%
GAAAACAAAAGGTGAAACTG+TGG - chr8_4:3655893-3655912 Msa1307740:CDS 35.0%
GAAATTTGGTACATCCATGT+TGG + chr8_4:3656222-3656241 None:intergenic 35.0%
TGTGTAATTGTGTCAAAAGG+TGG - chr8_4:3656403-3656422 Msa1307740:CDS 35.0%
AAGAAAGTCAAACGATATCC+AGG - chr8_4:3656631-3656650 Msa1307740:five_prime_UTR 35.0%
! TAAAATAGAGCTTTTAGCGG+TGG - chr8_4:3655482-3655501 Msa1307740:three_prime_UTR 35.0%
! AAAATAGAGCTTTTAGCGGT+GGG - chr8_4:3655483-3655502 Msa1307740:three_prime_UTR 35.0%
ATTCAGTTTCGTGGTCTTTA+AGG + chr8_4:3655638-3655657 None:intergenic 35.0%
!! CTTTTTGGTATTCAGTTTCG+TGG + chr8_4:3655647-3655666 None:intergenic 35.0%
TAGCAGTTGGAAATGTCTAA+AGG - chr8_4:3655807-3655826 Msa1307740:CDS 35.0%
GAAAACAAAAGGTGAAACTG+TGG - chr8_4:3655893-3655912 Msa1307740:CDS 35.0%
GAAATTTGGTACATCCATGT+TGG + chr8_4:3656222-3656241 None:intergenic 35.0%
TGTGTAATTGTGTCAAAAGG+TGG - chr8_4:3656403-3656422 Msa1307740:CDS 35.0%
!! ACTATATGCCACTTTCCTCT+TGG + chr8_4:3655390-3655409 None:intergenic 40.0%
AAAGAAAGATTTCTCTCCGG+CGG - chr8_4:3655524-3655543 Msa1307740:intron 40.0%
CAGTTGGAAATGTCTAAAGG+AGG - chr8_4:3655810-3655829 Msa1307740:CDS 40.0%
! CTTTGAAGGACTAGATGCTT+CGG + chr8_4:3655853-3655872 None:intergenic 40.0%
AAAGGTGAAACTGTGGATGA+TGG - chr8_4:3655900-3655919 Msa1307740:CDS 40.0%
TTCACTTGTGATGAGAGTGA+AGG - chr8_4:3656052-3656071 Msa1307740:CDS 40.0%
TACTCCCAACGGATCTAAAT+GGG + chr8_4:3656091-3656110 None:intergenic 40.0%
ATACTCCCAACGGATCTAAA+TGG + chr8_4:3656092-3656111 None:intergenic 40.0%
CTCTTTGAACATACTCCCAA+CGG + chr8_4:3656102-3656121 None:intergenic 40.0%
!! AAAGATGTTTCTAGCAGCCA+TGG - chr8_4:3656128-3656147 Msa1307740:CDS 40.0%
CTTAAGAGAAGGAAGAGATG+TGG + chr8_4:3656186-3656205 None:intergenic 40.0%
GATTCCAGATATGACCAACA+TGG - chr8_4:3656205-3656224 Msa1307740:intron 40.0%
ACATCCATGTTGGTCATATC+TGG + chr8_4:3656212-3656231 None:intergenic 40.0%
GGATGTACCAAATTTCGGAA+AGG - chr8_4:3656226-3656245 Msa1307740:intron 40.0%
GTTGATCATCCACTCTCAAT+TGG - chr8_4:3656276-3656295 Msa1307740:intron 40.0%
! GTGGTAGTTACCTTTTCTAG+TGG - chr8_4:3656422-3656441 Msa1307740:CDS 40.0%
TACGCAAATGCCACTAGAAA+AGG + chr8_4:3656435-3656454 None:intergenic 40.0%
GCGGATCTATGTGTATGTAT+GGG - chr8_4:3656516-3656535 Msa1307740:five_prime_UTR 40.0%
!! ACTATATGCCACTTTCCTCT+TGG + chr8_4:3655390-3655409 None:intergenic 40.0%
AAAGAAAGATTTCTCTCCGG+CGG - chr8_4:3655524-3655543 Msa1307740:intron 40.0%
CAGTTGGAAATGTCTAAAGG+AGG - chr8_4:3655810-3655829 Msa1307740:CDS 40.0%
! CTTTGAAGGACTAGATGCTT+CGG + chr8_4:3655853-3655872 None:intergenic 40.0%
AAAGGTGAAACTGTGGATGA+TGG - chr8_4:3655900-3655919 Msa1307740:CDS 40.0%
TTCACTTGTGATGAGAGTGA+AGG - chr8_4:3656052-3656071 Msa1307740:CDS 40.0%
TACTCCCAACGGATCTAAAT+GGG + chr8_4:3656091-3656110 None:intergenic 40.0%
ATACTCCCAACGGATCTAAA+TGG + chr8_4:3656092-3656111 None:intergenic 40.0%
CTCTTTGAACATACTCCCAA+CGG + chr8_4:3656102-3656121 None:intergenic 40.0%
!! AAAGATGTTTCTAGCAGCCA+TGG - chr8_4:3656128-3656147 Msa1307740:CDS 40.0%
CTTAAGAGAAGGAAGAGATG+TGG + chr8_4:3656186-3656205 None:intergenic 40.0%
GATTCCAGATATGACCAACA+TGG - chr8_4:3656205-3656224 Msa1307740:intron 40.0%
ACATCCATGTTGGTCATATC+TGG + chr8_4:3656212-3656231 None:intergenic 40.0%
GGATGTACCAAATTTCGGAA+AGG - chr8_4:3656226-3656245 Msa1307740:intron 40.0%
GTTGATCATCCACTCTCAAT+TGG - chr8_4:3656276-3656295 Msa1307740:intron 40.0%
! GTGGTAGTTACCTTTTCTAG+TGG - chr8_4:3656422-3656441 Msa1307740:CDS 40.0%
TACGCAAATGCCACTAGAAA+AGG + chr8_4:3656435-3656454 None:intergenic 40.0%
GCGGATCTATGTGTATGTAT+GGG - chr8_4:3656516-3656535 Msa1307740:five_prime_UTR 40.0%
CAACAAACCGCAAGCCAATA+AGG - chr8_4:3655416-3655435 Msa1307740:three_prime_UTR 45.0%
ACACAAGAGACGTGCCTTAT+TGG + chr8_4:3655433-3655452 None:intergenic 45.0%
AAGGACTAGATGCTTCGGAT+TGG + chr8_4:3655848-3655867 None:intergenic 45.0%
AGCATCTAGTCCTTCAAAGC+AGG - chr8_4:3655854-3655873 Msa1307740:CDS 45.0%
ATCTAGTCCTTCAAAGCAGG+TGG - chr8_4:3655857-3655876 Msa1307740:CDS 45.0%
AGGATGCATGGGAAGTGAAA+AGG - chr8_4:3655923-3655942 Msa1307740:CDS 45.0%
AGCAATGATTGTCCTCACTG+TGG - chr8_4:3656010-3656029 Msa1307740:CDS 45.0%
CTTGTGATGAGAGTGAAGGA+TGG - chr8_4:3656056-3656075 Msa1307740:CDS 45.0%
AACCACCCATTTAGATCCGT+TGG - chr8_4:3656083-3656102 Msa1307740:CDS 45.0%
ACCACCCATTTAGATCCGTT+GGG - chr8_4:3656084-3656103 Msa1307740:CDS 45.0%
CAAGCTCAACCAATTGAGAG+TGG + chr8_4:3656288-3656307 None:intergenic 45.0%
GGCGGATCTATGTGTATGTA+TGG - chr8_4:3656515-3656534 Msa1307740:five_prime_UTR 45.0%
CAACAAACCGCAAGCCAATA+AGG - chr8_4:3655416-3655435 Msa1307740:three_prime_UTR 45.0%
ACACAAGAGACGTGCCTTAT+TGG + chr8_4:3655433-3655452 None:intergenic 45.0%
AAGGACTAGATGCTTCGGAT+TGG + chr8_4:3655848-3655867 None:intergenic 45.0%
AGCATCTAGTCCTTCAAAGC+AGG - chr8_4:3655854-3655873 Msa1307740:CDS 45.0%
ATCTAGTCCTTCAAAGCAGG+TGG - chr8_4:3655857-3655876 Msa1307740:CDS 45.0%
AGGATGCATGGGAAGTGAAA+AGG - chr8_4:3655923-3655942 Msa1307740:CDS 45.0%
AGCAATGATTGTCCTCACTG+TGG - chr8_4:3656010-3656029 Msa1307740:CDS 45.0%
CTTGTGATGAGAGTGAAGGA+TGG - chr8_4:3656056-3656075 Msa1307740:CDS 45.0%
AACCACCCATTTAGATCCGT+TGG - chr8_4:3656083-3656102 Msa1307740:CDS 45.0%
ACCACCCATTTAGATCCGTT+GGG - chr8_4:3656084-3656103 Msa1307740:CDS 45.0%
CAAGCTCAACCAATTGAGAG+TGG + chr8_4:3656288-3656307 None:intergenic 45.0%
GGCGGATCTATGTGTATGTA+TGG - chr8_4:3656515-3656534 Msa1307740:five_prime_UTR 45.0%
!! TGGAGTGGGAAAGTGCTTTG+TGG + chr8_4:3655370-3655389 None:intergenic 50.0%
AAGCACTTTCCCACTCCAAG+AGG - chr8_4:3655372-3655391 Msa1307740:three_prime_UTR 50.0%
TTCCCACTCCAAGAGGAAAG+TGG - chr8_4:3655379-3655398 Msa1307740:three_prime_UTR 50.0%
!! TGCCACTTTCCTCTTGGAGT+GGG + chr8_4:3655384-3655403 None:intergenic 50.0%
!! ATGCCACTTTCCTCTTGGAG+TGG + chr8_4:3655385-3655404 None:intergenic 50.0%
!! AGACGTGCCTTATTGGCTTG+CGG + chr8_4:3655426-3655445 None:intergenic 50.0%
! TAGAGCTTTTAGCGGTGGGT+CGG - chr8_4:3655487-3655506 Msa1307740:intron 50.0%
AGATTTCTCTCCGGCGGTTA+TGG - chr8_4:3655530-3655549 Msa1307740:three_prime_UTR 50.0%
CTATCTTGCTCCATAACCGC+CGG + chr8_4:3655543-3655562 None:intergenic 50.0%
CGGTTATGGAGCAAGATAGG+AGG - chr8_4:3655544-3655563 Msa1307740:three_prime_UTR 50.0%
! GTAGGTGGGAGAGAGCTTTT+TGG + chr8_4:3655662-3655681 None:intergenic 50.0%
CTGAGAGACAGAGAGTAGGT+GGG + chr8_4:3655676-3655695 None:intergenic 50.0%
GTACCTGAGAGACAGAGAGT+AGG + chr8_4:3655680-3655699 None:intergenic 50.0%
! GGTGAAACTGTGGATGATGG+AGG - chr8_4:3655903-3655922 Msa1307740:CDS 50.0%
!! TGTGGATGATGGAGGATGCA+TGG - chr8_4:3655911-3655930 Msa1307740:CDS 50.0%
!! GTGGATGATGGAGGATGCAT+GGG - chr8_4:3655912-3655931 Msa1307740:CDS 50.0%
TGATTGTCCTCACTGTGGCT+TGG - chr8_4:3656015-3656034 Msa1307740:CDS 50.0%
ATAGTTGCCAAGCCACAGTG+AGG + chr8_4:3656025-3656044 None:intergenic 50.0%
! TGTGGCTTGGCAACTATCAG+AGG - chr8_4:3656028-3656047 Msa1307740:CDS 50.0%
TCCCAACGGATCTAAATGGG+TGG + chr8_4:3656088-3656107 None:intergenic 50.0%
!! TGTTTCTAGCAGCCATGGTC+AGG - chr8_4:3656133-3656152 Msa1307740:CDS 50.0%
TGTCATCAGCATCCTGACCA+TGG + chr8_4:3656148-3656167 None:intergenic 50.0%
GTTAGCACAGAAGAGCCAGA+AGG - chr8_4:3656486-3656505 Msa1307740:five_prime_UTR 50.0%
AGAAGAGCCAGAAGGTAGAG+TGG - chr8_4:3656494-3656513 Msa1307740:five_prime_UTR 50.0%
AGTGCTTTGTGGACCTTTCC+TGG + chr8_4:3655359-3655378 None:intergenic 50.0%
!! TGGAGTGGGAAAGTGCTTTG+TGG + chr8_4:3655370-3655389 None:intergenic 50.0%
AAGCACTTTCCCACTCCAAG+AGG - chr8_4:3655372-3655391 Msa1307740:three_prime_UTR 50.0%
TTCCCACTCCAAGAGGAAAG+TGG - chr8_4:3655379-3655398 Msa1307740:three_prime_UTR 50.0%
!! TGCCACTTTCCTCTTGGAGT+GGG + chr8_4:3655384-3655403 None:intergenic 50.0%
!! ATGCCACTTTCCTCTTGGAG+TGG + chr8_4:3655385-3655404 None:intergenic 50.0%
!! AGACGTGCCTTATTGGCTTG+CGG + chr8_4:3655426-3655445 None:intergenic 50.0%
! TAGAGCTTTTAGCGGTGGGT+CGG - chr8_4:3655487-3655506 Msa1307740:intron 50.0%
AGATTTCTCTCCGGCGGTTA+TGG - chr8_4:3655530-3655549 Msa1307740:three_prime_UTR 50.0%
CTATCTTGCTCCATAACCGC+CGG + chr8_4:3655543-3655562 None:intergenic 50.0%
CGGTTATGGAGCAAGATAGG+AGG - chr8_4:3655544-3655563 Msa1307740:three_prime_UTR 50.0%
! GTAGGTGGGAGAGAGCTTTT+TGG + chr8_4:3655662-3655681 None:intergenic 50.0%
CTGAGAGACAGAGAGTAGGT+GGG + chr8_4:3655676-3655695 None:intergenic 50.0%
GTACCTGAGAGACAGAGAGT+AGG + chr8_4:3655680-3655699 None:intergenic 50.0%
! GGTGAAACTGTGGATGATGG+AGG - chr8_4:3655903-3655922 Msa1307740:CDS 50.0%
!! TGTGGATGATGGAGGATGCA+TGG - chr8_4:3655911-3655930 Msa1307740:CDS 50.0%
!! GTGGATGATGGAGGATGCAT+GGG - chr8_4:3655912-3655931 Msa1307740:CDS 50.0%
TGATTGTCCTCACTGTGGCT+TGG - chr8_4:3656015-3656034 Msa1307740:CDS 50.0%
ATAGTTGCCAAGCCACAGTG+AGG + chr8_4:3656025-3656044 None:intergenic 50.0%
! TGTGGCTTGGCAACTATCAG+AGG - chr8_4:3656028-3656047 Msa1307740:CDS 50.0%
TCCCAACGGATCTAAATGGG+TGG + chr8_4:3656088-3656107 None:intergenic 50.0%
!! TGTTTCTAGCAGCCATGGTC+AGG - chr8_4:3656133-3656152 Msa1307740:CDS 50.0%
TGTCATCAGCATCCTGACCA+TGG + chr8_4:3656148-3656167 None:intergenic 50.0%
GTTAGCACAGAAGAGCCAGA+AGG - chr8_4:3656486-3656505 Msa1307740:five_prime_UTR 50.0%
AGAAGAGCCAGAAGGTAGAG+TGG - chr8_4:3656494-3656513 Msa1307740:five_prime_UTR 50.0%
CGGCGGTTATGGAGCAAGAT+AGG - chr8_4:3655541-3655560 Msa1307740:three_prime_UTR 55.0%
CCTGAGAGACAGAGAGTAGG+TGG + chr8_4:3655677-3655696 None:intergenic 55.0%
CCACCTACTCTCTGTCTCTC+AGG - chr8_4:3655674-3655693 Msa1307740:three_prime_UTR 55.0%
GCAGAAGCCACCTGCTTTGA+AGG + chr8_4:3655867-3655886 None:intergenic 55.0%
AGAGCCAGAAGGTAGAGTGG+CGG - chr8_4:3656497-3656516 Msa1307740:five_prime_UTR 55.0%
AGATCCGCCACTCTACCTTC+TGG + chr8_4:3656504-3656523 None:intergenic 55.0%
CGGCGGTTATGGAGCAAGAT+AGG - chr8_4:3655541-3655560 Msa1307740:three_prime_UTR 55.0%
CCTGAGAGACAGAGAGTAGG+TGG + chr8_4:3655677-3655696 None:intergenic 55.0%
CCACCTACTCTCTGTCTCTC+AGG - chr8_4:3655674-3655693 Msa1307740:three_prime_UTR 55.0%
GCAGAAGCCACCTGCTTTGA+AGG + chr8_4:3655867-3655886 None:intergenic 55.0%
AGAGCCAGAAGGTAGAGTGG+CGG - chr8_4:3656497-3656516 Msa1307740:five_prime_UTR 55.0%
AGATCCGCCACTCTACCTTC+TGG + chr8_4:3656504-3656523 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 3655359 3656651 3655359 ID=Msa1307740;Name=Msa1307740
chr8_4 mRNA 3655359 3656651 3655359 ID=Msa1307740-mRNA-1;Parent=Msa1307740;Name=Msa1307740-mRNA-1;_AED=0.05;_eAED=0.05;_QI=190|1|1|1|0.5|0.33|3|371|196
chr8_4 exon 3655359 3655502 3655359 ID=Msa1307740-mRNA-1:exon:1085;Parent=Msa1307740-mRNA-1
chr8_4 exon 3655530 3656200 3655530 ID=Msa1307740-mRNA-1:exon:1084;Parent=Msa1307740-mRNA-1
chr8_4 exon 3656315 3656651 3656315 ID=Msa1307740-mRNA-1:exon:1083;Parent=Msa1307740-mRNA-1
chr8_4 five_prime_UTR 3656462 3656651 3656462 ID=Msa1307740-mRNA-1:five_prime_utr;Parent=Msa1307740-mRNA-1
chr8_4 CDS 3656315 3656461 3656315 ID=Msa1307740-mRNA-1:cds;Parent=Msa1307740-mRNA-1
chr8_4 CDS 3655757 3656200 3655757 ID=Msa1307740-mRNA-1:cds;Parent=Msa1307740-mRNA-1
chr8_4 three_prime_UTR 3655530 3655756 3655530 ID=Msa1307740-mRNA-1:three_prime_utr;Parent=Msa1307740-mRNA-1
chr8_4 three_prime_UTR 3655359 3655502 3655359 ID=Msa1307740-mRNA-1:three_prime_utr;Parent=Msa1307740-mRNA-1
Gene Sequence

>Msa1307740

ATGGAGCAAGATAGGAGGCTTGAACTCATCGACCAAGCAATTCAAAAACATATTCATAACAAAAGTGACAATAATAATAATCATAACCTTAAAGACCACGAAACTGAATACCAAAAAGCTCTCTCCCACCTACTCTCTGTCTCTCAGCAGTTGGAAATGTCTAAAGGAGGTGAAACAGTTAACCAATCCGAAGCATCTAGTCCTTCAAAGCAGGTGGCTTCTGCAATTGAGAAAACAAAAGGTGAAACTGTGGATGATGGAGGATGCATGGGAAGTGAAAAGGATGAGATAATCAAAGAGCTGAAAAAGGTGAAGAAGCAGAATTTTGTGACTCATTGTCTTCTTTCAGCAATGATTGTCCTCACTGTGGCTTGGCAACTATCAGAGGTTTCACTTGTGATGAGAGTGAAGGATGGAATAAACCACCCATTTAGATCCGTTGGGAGTATGTTCAAAGAGATAGTGAAAGATGTTTCTAGCAGCCATGGTCAGGATGCTGATGACAAAGAAAACAATGAATCCACATCTCTTCCTTCTCTTAAGATTCCAGATATGACCAACATGGATGTACCAAATTTCGGAAAGGAATGA

Protein sequence

>Msa1307740

MEQDRRLELIDQAIQKHIHNKSDNNNNHNLKDHETEYQKALSHLLSVSQQLEMSKGGETVNQSEASSPSKQVASAIEKTKGETVDDGGCMGSEKDEIIKELKKVKKQNFVTHCLLSAMIVLTVAWQLSEVSLVMRVKDGINHPFRSVGSMFKEIVKDVSSSHGQDADDKENNESTSLPSLKIPDMTNMDVPNFGKE*