Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238840 | XP_013443654.1 | 96.886 | 289 | 6 | 2 | 1 | 287 | 1 | 288 | 0.0 | 576 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238840 | sp|Q9LEX0|P2A13_ARATH | 61.786 | 280 | 101 | 3 | 1 | 277 | 1 | 277 | 1.42e-125 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238840 | A0A072TJF7 | 96.886 | 289 | 6 | 2 | 1 | 287 | 1 | 288 | 0.0 | 576 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007440 | Msa1238840 | 0.822890 | 1.859021e-53 | -8.615850e-47 |
| Msa0015930 | Msa1238840 | 0.818034 | 2.419370e-52 | -8.615850e-47 |
| Msa0032470 | Msa1238840 | 0.817211 | 3.708422e-52 | -8.615850e-47 |
| Msa0033110 | Msa1238840 | 0.807830 | 4.172428e-50 | -8.615850e-47 |
| Msa0033260 | Msa1238840 | 0.809352 | 1.974591e-50 | -8.615850e-47 |
| Msa0044000 | Msa1238840 | 0.819500 | 1.124482e-52 | -8.615850e-47 |
| Msa0044330 | Msa1238840 | 0.820688 | 6.011197e-53 | -8.615850e-47 |
| Msa0054750 | Msa1238840 | 0.800848 | 1.188582e-48 | -8.615850e-47 |
| Msa0076320 | Msa1238840 | 0.811458 | 6.932424e-51 | -8.615850e-47 |
| Msa0083280 | Msa1238840 | 0.819305 | 1.245163e-52 | -8.615850e-47 |
| Msa0091410 | Msa1238840 | 0.808498 | 3.006496e-50 | -8.615850e-47 |
| Msa0104240 | Msa1238840 | 0.809608 | 1.739945e-50 | -8.615850e-47 |
| Msa0115790 | Msa1238840 | 0.802471 | 5.522385e-49 | -8.615850e-47 |
| Msa0604290 | Msa1238840 | 0.817230 | 3.673513e-52 | -8.615850e-47 |
| Msa0616860 | Msa1238840 | -0.805912 | 1.061483e-49 | -8.615850e-47 |
| Msa0641670 | Msa1238840 | 0.801130 | 1.040909e-48 | -8.615850e-47 |
| Msa0717230 | Msa1238840 | -0.803951 | 2.727946e-49 | -8.615850e-47 |
| Msa0737600 | Msa1238840 | 0.824239 | 8.991438e-54 | -8.615850e-47 |
| Msa0741440 | Msa1238840 | 0.837504 | 4.999259e-57 | -8.615850e-47 |
| Msa0747060 | Msa1238840 | 0.812167 | 4.857646e-51 | -8.615850e-47 |
| Msa0822500 | Msa1238840 | 0.808610 | 2.845299e-50 | -8.615850e-47 |
| Msa0832150 | Msa1238840 | 0.800360 | 1.494663e-48 | -8.615850e-47 |
| Msa0127800 | Msa1238840 | 0.806796 | 6.910429e-50 | -8.615850e-47 |
| Msa0137730 | Msa1238840 | 0.820734 | 5.866729e-53 | -8.615850e-47 |
| Msa0148080 | Msa1238840 | 0.830115 | 3.521138e-55 | -8.615850e-47 |
| Msa0156370 | Msa1238840 | 0.803386 | 3.573957e-49 | -8.615850e-47 |
| Msa0194950 | Msa1238840 | -0.812944 | 3.284863e-51 | -8.615850e-47 |
| Msa0217680 | Msa1238840 | 0.802238 | 6.167574e-49 | -8.615850e-47 |
| Msa0218370 | Msa1238840 | 0.809330 | 1.995583e-50 | -8.615850e-47 |
| Msa0233630 | Msa1238840 | -0.806245 | 9.032566e-50 | -8.615850e-47 |
| Msa1231840 | Msa1238840 | 0.860029 | 2.745628e-63 | -8.615850e-47 |
| Msa1238840 | Msa1254730 | 0.808067 | 3.716157e-50 | -8.615850e-47 |
| Msa1238840 | Msa1274560 | 0.800586 | 1.344649e-48 | -8.615850e-47 |
| Msa1238840 | Msa1280320 | 0.863286 | 2.773501e-64 | -8.615850e-47 |
| Msa1238840 | Msa1280340 | 0.922576 | 8.221289e-89 | -8.615850e-47 |
| Msa1238840 | Msa1294820 | 0.802980 | 4.335407e-49 | -8.615850e-47 |
| Msa1238840 | Msa1305660 | 0.810843 | 9.422646e-51 | -8.615850e-47 |
| Msa1238840 | Msa1312520 | 0.808906 | 2.459567e-50 | -8.615850e-47 |
| Msa1238840 | Msa1316360 | 0.804061 | 2.588530e-49 | -8.615850e-47 |
| Msa1238840 | Msa1331320 | 0.809070 | 2.268878e-50 | -8.615850e-47 |
| Msa1238840 | Msa1346840 | 0.815089 | 1.105101e-51 | -8.615850e-47 |
| Msa1238840 | Msa1351890 | 0.817992 | 2.473370e-52 | -8.615850e-47 |
| Msa1238840 | Msa1355890 | 0.802937 | 4.425986e-49 | -8.615850e-47 |
| Msa1238840 | Msa1368710 | 0.823543 | 1.309108e-53 | -8.615850e-47 |
| Msa1238840 | Msa1385770 | 0.822179 | 2.720828e-53 | -8.615850e-47 |
| Msa1238840 | Msa1396400 | -0.807081 | 6.016712e-50 | -8.615850e-47 |
| Msa1238840 | Msa1401990 | 0.820596 | 6.310760e-53 | -8.615850e-47 |
| Msa1238840 | Msa1409240 | 0.823878 | 1.092373e-53 | -8.615850e-47 |
| Msa1238840 | Msa1412890 | 0.821176 | 4.641351e-53 | -8.615850e-47 |
| Msa1238840 | Msa1419690 | 0.806642 | 7.449842e-50 | -8.615850e-47 |
| Msa1238840 | Msa1434140 | 0.828787 | 7.402420e-55 | -8.615850e-47 |
| Msa1238840 | Msa1457620 | 0.827035 | 1.953495e-54 | -8.615850e-47 |
| Msa0383800 | Msa1238840 | 0.818963 | 1.489720e-52 | -8.615850e-47 |
| Msa0398670 | Msa1238840 | 0.842396 | 2.652289e-58 | -8.615850e-47 |
| Msa0431980 | Msa1238840 | 0.807430 | 5.073463e-50 | -8.615850e-47 |
| Msa0454360 | Msa1238840 | 0.813019 | 3.162935e-51 | -8.615850e-47 |
| Msa0477080 | Msa1238840 | 0.826081 | 3.299707e-54 | -8.615850e-47 |
| Msa0987370 | Msa1238840 | 0.810199 | 1.298160e-50 | -8.615850e-47 |
| Msa1029050 | Msa1238840 | 0.850587 | 1.542262e-60 | -8.615850e-47 |
| Msa1037420 | Msa1238840 | 0.828828 | 7.238061e-55 | -8.615850e-47 |
| Msa1081790 | Msa1238840 | -0.810890 | 9.206323e-51 | -8.615850e-47 |
| Msa1089460 | Msa1238840 | 0.800567 | 1.356827e-48 | -8.615850e-47 |
| Msa0241390 | Msa1238840 | 0.804015 | 2.645687e-49 | -8.615850e-47 |
| Msa0256330 | Msa1238840 | 0.803756 | 2.994479e-49 | -8.615850e-47 |
| Msa0271510 | Msa1238840 | 0.805894 | 1.070582e-49 | -8.615850e-47 |
| Msa0272300 | Msa1238840 | 0.820814 | 5.623526e-53 | -8.615850e-47 |
| Msa0278580 | Msa1238840 | 0.804938 | 1.698640e-49 | -8.615850e-47 |
| Msa0295330 | Msa1238840 | 0.806919 | 6.510153e-50 | -8.615850e-47 |
| Msa0305410 | Msa1238840 | 0.844181 | 8.862237e-59 | -8.615850e-47 |
| Msa0315440 | Msa1238840 | -0.809939 | 1.476919e-50 | -8.615850e-47 |
| Msa0317940 | Msa1238840 | 0.810628 | 1.048618e-50 | -8.615850e-47 |
| Msa0318680 | Msa1238840 | 0.804836 | 1.783728e-49 | -8.615850e-47 |
| Msa0340380 | Msa1238840 | 0.831696 | 1.441804e-55 | -8.615850e-47 |
| Msa1123810 | Msa1238840 | 0.813527 | 2.446999e-51 | -8.615850e-47 |
| Msa1133230 | Msa1238840 | 0.803478 | 3.419813e-49 | -8.615850e-47 |
| Msa1158640 | Msa1238840 | -0.824754 | 6.798983e-54 | -8.615850e-47 |
| Msa1166090 | Msa1238840 | -0.806172 | 9.361112e-50 | -8.615850e-47 |
| Msa1176720 | Msa1238840 | 0.832348 | 9.949135e-56 | -8.615850e-47 |
| Msa1180500 | Msa1238840 | 0.802478 | 5.505907e-49 | -8.615850e-47 |
| Msa1184910 | Msa1238840 | 0.831863 | 1.311710e-55 | -8.615850e-47 |
| Msa1207310 | Msa1238840 | 0.810944 | 8.958266e-51 | -8.615850e-47 |
| Msa0520850 | Msa1238840 | 0.843161 | 1.661163e-58 | -8.615850e-47 |
| Msa0542260 | Msa1238840 | 0.832461 | 9.328269e-56 | -8.615850e-47 |
| Msa0542560 | Msa1238840 | 0.806393 | 8.406704e-50 | -8.615850e-47 |
| Msa0544840 | Msa1238840 | 0.810620 | 1.052899e-50 | -8.615850e-47 |
| Msa0548240 | Msa1238840 | 0.822565 | 2.213390e-53 | -8.615850e-47 |
| Msa0588260 | Msa1238840 | 0.802753 | 4.831331e-49 | -8.615850e-47 |
| Msa0849040 | Msa1238840 | 0.814143 | 1.790333e-51 | -8.615850e-47 |
| Msa0878220 | Msa1238840 | 0.807434 | 5.063273e-50 | -8.615850e-47 |
| Msa0888260 | Msa1238840 | 0.800693 | 1.278891e-48 | -8.615850e-47 |
| Msa0894710 | Msa1238840 | 0.806653 | 7.410076e-50 | -8.615850e-47 |
| Msa0927260 | Msa1238840 | 0.807822 | 4.188484e-50 | -8.615850e-47 |
| Msa0946280 | Msa1238840 | -0.802029 | 6.809560e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238840 | MtrunA17_Chr8g0350401 | 96.886 | 289 | 6 | 2 | 1 | 287 | 1 | 288 | 0.0 | 576 |
| Msa1238840 | MtrunA17_Chr4g0057281 | 62.403 | 258 | 95 | 1 | 23 | 280 | 19 | 274 | 4.76e-124 | 355 |
| Msa1238840 | MtrunA17_Chr1g0203751 | 62.745 | 255 | 92 | 1 | 23 | 277 | 28 | 279 | 1.23e-121 | 349 |
| Msa1238840 | MtrunA17_Chr6g0472801 | 56.475 | 278 | 117 | 2 | 1 | 278 | 1 | 274 | 8.48e-119 | 342 |
| Msa1238840 | MtrunA17_Chr5g0397981 | 59.375 | 256 | 99 | 2 | 23 | 277 | 35 | 286 | 1.29e-116 | 337 |
| Msa1238840 | MtrunA17_Chr7g0265551 | 54.639 | 291 | 114 | 3 | 1 | 280 | 73 | 356 | 1.55e-109 | 322 |
| Msa1238840 | MtrunA17_Chr7g0272101 | 25.843 | 267 | 163 | 5 | 26 | 275 | 4 | 252 | 1.81e-32 | 120 |
| Msa1238840 | MtrunA17_Chr4g0010881 | 27.381 | 252 | 158 | 5 | 26 | 275 | 4 | 232 | 2.54e-29 | 111 |
| Msa1238840 | MtrunA17_Chr7g0272091 | 25.448 | 279 | 173 | 6 | 26 | 277 | 10 | 280 | 7.27e-23 | 95.5 |
| Msa1238840 | MtrunA17_Chr1g0189591 | 36.806 | 144 | 89 | 2 | 25 | 167 | 15 | 157 | 1.32e-22 | 95.1 |
| Msa1238840 | MtrunA17_Chr1g0192371 | 30.303 | 198 | 118 | 5 | 26 | 219 | 11 | 192 | 1.22e-21 | 92.0 |
| Msa1238840 | MtrunA17_Chr1g0189671 | 28.708 | 209 | 131 | 3 | 25 | 232 | 6 | 197 | 1.70e-21 | 91.3 |
| Msa1238840 | MtrunA17_Chr1g0189611 | 30.909 | 165 | 109 | 3 | 25 | 186 | 6 | 168 | 5.10e-21 | 90.1 |
| Msa1238840 | MtrunA17_Chr1g0189751 | 30.332 | 211 | 125 | 4 | 23 | 230 | 4 | 195 | 4.08e-20 | 88.2 |
| Msa1238840 | MtrunA17_Chr1g0189821 | 32.298 | 161 | 104 | 3 | 25 | 182 | 6 | 164 | 5.83e-20 | 87.0 |
| Msa1238840 | MtrunA17_Chr1g0189621 | 25.287 | 261 | 178 | 7 | 25 | 275 | 6 | 259 | 3.34e-19 | 85.1 |
| Msa1238840 | MtrunA17_Chr1g0189641 | 31.544 | 149 | 98 | 1 | 22 | 170 | 3 | 147 | 4.05e-19 | 85.1 |
| Msa1238840 | MtrunA17_Chr1g0203281 | 25.000 | 276 | 172 | 9 | 25 | 277 | 6 | 269 | 4.42e-19 | 84.7 |
| Msa1238840 | MtrunA17_Chr1g0189721 | 29.762 | 168 | 110 | 3 | 22 | 186 | 3 | 165 | 5.18e-19 | 84.3 |
| Msa1238840 | MtrunA17_Chr1g0203331 | 32.667 | 150 | 93 | 3 | 40 | 186 | 6 | 150 | 1.08e-18 | 83.2 |
| Msa1238840 | MtrunA17_Chr1g0190071 | 30.435 | 161 | 108 | 3 | 25 | 182 | 6 | 165 | 7.28e-18 | 81.6 |
| Msa1238840 | MtrunA17_Chr3g0097191 | 24.549 | 277 | 165 | 8 | 23 | 277 | 10 | 264 | 1.64e-16 | 77.4 |
| Msa1238840 | MtrunA17_Chr1g0189781 | 30.822 | 146 | 99 | 2 | 26 | 170 | 11 | 155 | 1.15e-15 | 75.1 |
| Msa1238840 | MtrunA17_Chr1g0189771 | 29.452 | 146 | 101 | 2 | 26 | 170 | 15 | 159 | 1.35e-14 | 70.5 |
| Msa1238840 | MtrunA17_Chr1g0189661 | 32.450 | 151 | 91 | 4 | 25 | 170 | 6 | 150 | 1.60e-13 | 69.3 |
| Msa1238840 | MtrunA17_Chr3g0095261 | 28.378 | 148 | 92 | 5 | 23 | 167 | 10 | 146 | 1.48e-12 | 66.6 |
| Msa1238840 | MtrunA17_Chr7g0260801 | 23.723 | 274 | 164 | 7 | 25 | 275 | 18 | 269 | 1.61e-12 | 66.2 |
| Msa1238840 | MtrunA17_Chr3g0078331 | 26.590 | 173 | 108 | 6 | 25 | 182 | 19 | 187 | 1.59e-11 | 63.9 |
| Msa1238840 | MtrunA17_Chr1g0189711 | 25.339 | 221 | 137 | 8 | 25 | 234 | 6 | 209 | 2.90e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1238840 | AT3G61060.1 | 61.786 | 280 | 101 | 3 | 1 | 277 | 1 | 277 | 1.45e-126 | 362 |
| Msa1238840 | AT3G61060.2 | 61.566 | 281 | 101 | 4 | 1 | 277 | 1 | 278 | 9.16e-125 | 358 |
| Msa1238840 | AT1G12710.1 | 58.781 | 279 | 108 | 3 | 4 | 281 | 11 | 283 | 1.08e-115 | 335 |
| Msa1238840 | AT5G52120.1 | 56.371 | 259 | 110 | 1 | 23 | 278 | 21 | 279 | 1.43e-112 | 327 |
| Msa1238840 | AT1G12710.2 | 51.090 | 321 | 108 | 4 | 4 | 281 | 11 | 325 | 1.20e-106 | 313 |
| Msa1238840 | AT1G63090.1 | 56.098 | 287 | 114 | 4 | 1 | 281 | 1 | 281 | 1.35e-105 | 309 |
| Msa1238840 | AT3G53000.1 | 52.365 | 296 | 124 | 4 | 1 | 285 | 1 | 290 | 2.13e-104 | 306 |
| Msa1238840 | AT2G02360.1 | 32.911 | 158 | 95 | 3 | 27 | 181 | 18 | 167 | 2.91e-23 | 96.7 |
| Msa1238840 | AT1G09155.1 | 25.342 | 292 | 161 | 6 | 26 | 277 | 3 | 277 | 4.51e-23 | 96.3 |
| Msa1238840 | AT2G02240.1 | 27.481 | 262 | 165 | 7 | 26 | 275 | 64 | 312 | 6.39e-23 | 96.7 |
| Msa1238840 | AT1G80110.1 | 27.376 | 263 | 173 | 7 | 23 | 277 | 1 | 253 | 1.44e-22 | 94.4 |
| Msa1238840 | AT2G02340.1 | 32.515 | 163 | 101 | 3 | 23 | 182 | 36 | 192 | 3.47e-22 | 94.4 |
| Msa1238840 | AT2G02230.1 | 32.967 | 182 | 109 | 5 | 13 | 189 | 22 | 195 | 6.17e-22 | 94.0 |
| Msa1238840 | AT5G24560.1 | 27.273 | 165 | 105 | 3 | 25 | 182 | 5 | 161 | 4.38e-21 | 89.0 |
| Msa1238840 | AT2G02250.1 | 29.310 | 174 | 111 | 4 | 25 | 194 | 49 | 214 | 3.40e-19 | 86.3 |
| Msa1238840 | AT1G56250.1 | 28.641 | 206 | 128 | 3 | 26 | 229 | 4 | 192 | 1.10e-18 | 84.3 |
| Msa1238840 | AT2G02310.1 | 31.875 | 160 | 98 | 4 | 25 | 181 | 47 | 198 | 1.56e-17 | 81.3 |
| Msa1238840 | AT2G02320.1 | 24.476 | 286 | 156 | 11 | 23 | 277 | 40 | 296 | 2.40e-17 | 80.9 |
| Msa1238840 | AT2G02350.2 | 31.507 | 146 | 86 | 4 | 23 | 164 | 24 | 159 | 2.89e-17 | 80.5 |
| Msa1238840 | AT1G56240.1 | 24.068 | 295 | 161 | 8 | 26 | 277 | 4 | 278 | 4.13e-16 | 77.0 |
| Msa1238840 | AT2G02300.1 | 24.567 | 289 | 178 | 8 | 2 | 275 | 13 | 276 | 4.75e-14 | 71.2 |
Find 121 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGAATTGGCATGAATTTC+TGG | 0.101366 | 8_2:-19688924 | None:intergenic |
| TTACTTTGGTTTAGGAAATT+TGG | 0.134071 | 8_2:+19690225 | Msa1238840:intron |
| AGTAGTTCTGGTGCTGAATT+AGG | 0.154613 | 8_2:+19689656 | Msa1238840:CDS |
| TTGCTTATCTTCATCAAATT+TGG | 0.158739 | 8_2:+19690708 | Msa1238840:CDS |
| GTTCCATTGTCAAACAAATT+AGG | 0.220564 | 8_2:-19689710 | None:intergenic |
| GTTACACTTTCATTTATAAT+TGG | 0.224524 | 8_2:-19691474 | None:intergenic |
| AAACACGCACTTAGCAATTT+TGG | 0.226458 | 8_2:+19691216 | Msa1238840:three_prime_UTR |
| ACACAATTGGTTCAAAATTC+AGG | 0.236369 | 8_2:+19688987 | Msa1238840:five_prime_UTR |
| TGTATGTCCCTACTGGAAAT+TGG | 0.254973 | 8_2:-19690760 | None:intergenic |
| ATTGGATTCTTCAAGATCTA+TGG | 0.276244 | 8_2:-19688866 | None:intergenic |
| AACTCGTCGGCCGAGCTTCT+TGG | 0.292282 | 8_2:-19690816 | None:intergenic |
| CTCCAAAGCGTTAAGGATTA+CGG | 0.292357 | 8_2:+19690286 | Msa1238840:CDS |
| AGCATTGGTGTTGATGTATT+TGG | 0.300604 | 8_2:+19689499 | Msa1238840:CDS |
| TGCATGAAAGTGTAACATTA+TGG | 0.325249 | 8_2:+19691451 | Msa1238840:three_prime_UTR |
| CTGGATTGTCCAAATGAGTA+TGG | 0.340026 | 8_2:-19690922 | None:intergenic |
| GTCGTCAGCTGAAACTTTGC+AGG | 0.342371 | 8_2:-19690875 | None:intergenic |
| AAAAGCTAGTTGTGGTGAAA+TGG | 0.343005 | 8_2:-19688944 | None:intergenic |
| GAGGATGATACTAGTAGTTC+TGG | 0.343245 | 8_2:+19689644 | Msa1238840:CDS |
| AAGAAACCAAACATCTATCT+TGG | 0.350180 | 8_2:-19691297 | None:intergenic |
| GAGGACTGGTGGGGTTTGTT+TGG | 0.351931 | 8_2:+19690256 | Msa1238840:CDS |
| CCCCGTAATCCTTAACGCTT+TGG | 0.363217 | 8_2:-19690288 | None:intergenic |
| TGCTGTATCCCATACTCATT+TGG | 0.366142 | 8_2:+19690913 | Msa1238840:CDS |
| GTTCTTTGAGACCAAGGCTT+GGG | 0.375162 | 8_2:+19689456 | Msa1238840:CDS |
| GGGGATTAACTAGTTTGGTT+AGG | 0.382175 | 8_2:+19689367 | Msa1238840:five_prime_UTR |
| GGATTGATGATCGCAGATAT+TGG | 0.386282 | 8_2:+19690309 | Msa1238840:CDS |
| TCCAAAGCGTTAAGGATTAC+GGG | 0.392021 | 8_2:+19690287 | Msa1238840:CDS |
| AAAATTGCTAAGTGCGTGTT+TGG | 0.396017 | 8_2:-19691214 | None:intergenic |
| GTAAGCTAGCACGATTGAAT+AGG | 0.403310 | 8_2:+19689537 | Msa1238840:CDS |
| CAATTTCCTCCAAAGCGTTA+AGG | 0.404456 | 8_2:+19690279 | Msa1238840:CDS |
| GTTTATCATGGGGAAAGCTT+TGG | 0.404604 | 8_2:+19689622 | Msa1238840:CDS |
| TTTAGTTAAATTCAGATTCT+GGG | 0.405642 | 8_2:+19689221 | Msa1238840:five_prime_UTR |
| TTTAGTTGAATTCAGATTCT+GGG | 0.411102 | 8_2:+19689024 | Msa1238840:five_prime_UTR |
| AGGAAATTTGGCTAGATAAG+AGG | 0.417127 | 8_2:+19690237 | Msa1238840:intron |
| AGCTTCCCAAGATAGATGTT+TGG | 0.417715 | 8_2:+19691291 | Msa1238840:three_prime_UTR |
| TTTAGTTGAATTGATATTCT+GGG | 0.423379 | 8_2:+19689316 | Msa1238840:five_prime_UTR |
| CTTATCTTCATCAAATTTGG+TGG | 0.424285 | 8_2:+19690711 | Msa1238840:CDS |
| TTTAGTTGAATTCAGATTCT+GGG | 0.426964 | 8_2:+19689107 | Msa1238840:five_prime_UTR |
| AAAGCTAGTTGTGGTGAAAT+GGG | 0.432853 | 8_2:-19688943 | None:intergenic |
| GTTGAATTATGAGTTTATCA+TGG | 0.433360 | 8_2:+19689610 | Msa1238840:CDS |
| GTAGTTCTGGTGCTGAATTA+GGG | 0.434606 | 8_2:+19689657 | Msa1238840:CDS |
| TGTTGTGCTTTCTCAAAGAA+TGG | 0.435095 | 8_2:+19691395 | Msa1238840:three_prime_UTR |
| TTAGTGCATGTTTGGTATCA+TGG | 0.438087 | 8_2:+19691154 | Msa1238840:three_prime_UTR |
| CTTCGATTCCCAAACAAAAT+CGG | 0.438511 | 8_2:-19689582 | None:intergenic |
| TCGATAAATTCGATAAATTG+AGG | 0.439921 | 8_2:+19689279 | Msa1238840:five_prime_UTR |
| GTGTACTCTATTACTTCAGC+TGG | 0.441051 | 8_2:+19691426 | Msa1238840:three_prime_UTR |
| TAAGCTAGCACGATTGAATA+GGG | 0.441465 | 8_2:+19689538 | Msa1238840:CDS |
| GGGGATAAAGTAGTTTGGTT+TGG | 0.444286 | 8_2:+19689158 | Msa1238840:five_prime_UTR |
| GGGAATTGGCATGAATTTCT+GGG | 0.451649 | 8_2:-19688923 | None:intergenic |
| TTGAATTATGAGTTTATCAT+GGG | 0.453294 | 8_2:+19689611 | Msa1238840:CDS |
| GTGATGGATTTGATAAATTG+AGG | 0.454011 | 8_2:+19689070 | Msa1238840:five_prime_UTR |
| GATGAAGATAAGCAACTGTA+TGG | 0.457688 | 8_2:-19690700 | None:intergenic |
| CTTGAAGAATCCAATTCAAC+CGG | 0.458137 | 8_2:+19688874 | Msa1238840:five_prime_UTR |
| GAGTTGACTTAGTGCATGTT+TGG | 0.469491 | 8_2:+19691146 | Msa1238840:three_prime_UTR |
| AGACCGAGCACATCCATGGC+TGG | 0.472037 | 8_2:+19690843 | Msa1238840:CDS |
| AATCCAATTCAACCGGAAAA+CGG | 0.473568 | 8_2:+19688881 | Msa1238840:five_prime_UTR |
| CATACTCATTTGGACAATCC+AGG | 0.476869 | 8_2:+19690923 | Msa1238840:CDS |
| ACTTCAGACTTCACCTTGGC+AGG | 0.477175 | 8_2:+19690789 | Msa1238840:CDS |
| TATCATGGGGAAAGCTTTGG+AGG | 0.486059 | 8_2:+19689625 | Msa1238840:CDS |
| AGAAACCAAACATCTATCTT+GGG | 0.486840 | 8_2:-19691296 | None:intergenic |
| CGTGCTAGCTTACATATATC+CGG | 0.487725 | 8_2:-19689527 | None:intergenic |
| CGTAATCCTTAACGCTTTGG+AGG | 0.488223 | 8_2:-19690285 | None:intergenic |
| GACATTGGGAGGTACACAAT+TGG | 0.491891 | 8_2:+19688974 | Msa1238840:five_prime_UTR |
| TACACACTGTATGTCCCTAC+TGG | 0.496964 | 8_2:-19690767 | None:intergenic |
| ACCAATGCTACACAACTCTC+AGG | 0.508215 | 8_2:-19689485 | None:intergenic |
| AGTTGTGGTGAAATGGGAAT+TGG | 0.514617 | 8_2:-19688937 | None:intergenic |
| TCAAATTTGGTGGCTTGAAG+TGG | 0.515749 | 8_2:+19690721 | Msa1238840:CDS |
| TTTCCTCATGTGGATGTGAT+GGG | 0.522582 | 8_2:+19689420 | Msa1238840:CDS |
| TGAATTCAGATTCTGGGTCA+TGG | 0.524163 | 8_2:+19689030 | Msa1238840:five_prime_UTR |
| TTGATTTCCAATTTCCAGTA+GGG | 0.525554 | 8_2:+19690753 | Msa1238840:CDS |
| AAGCCTAATTTGTTTGACAA+TGG | 0.526555 | 8_2:+19689707 | Msa1238840:CDS |
| TTTCAGCTGACGACTTCTGA+TGG | 0.534756 | 8_2:+19690884 | Msa1238840:CDS |
| GGCTAGATAAGAGGACTGGT+GGG | 0.535196 | 8_2:+19690246 | Msa1238840:CDS |
| GGCAGGTCATCCAAGAAGCT+CGG | 0.535630 | 8_2:+19690806 | Msa1238840:CDS |
| AATAGATTGCACTCATACCA+AGG | 0.535661 | 8_2:+19691027 | Msa1238840:CDS |
| ATTGATTTCCAATTTCCAGT+AGG | 0.547843 | 8_2:+19690752 | Msa1238840:CDS |
| TGGTCGCATAGGGTGTGTCC+AGG | 0.548204 | 8_2:+19691236 | Msa1238840:three_prime_UTR |
| ATGTGGATGTGATGGGGATG+AGG | 0.549045 | 8_2:+19689427 | Msa1238840:CDS |
| GTCGACACACAAACCACCCT+TGG | 0.552331 | 8_2:-19691044 | None:intergenic |
| ATTTGGACAATCCAGGGCAC+TGG | 0.554734 | 8_2:+19690930 | Msa1238840:CDS |
| GACCGAGCACATCCATGGCT+GGG | 0.560312 | 8_2:+19690844 | Msa1238840:CDS |
| TTCTCAAAGAATGGAATGGT+TGG | 0.561798 | 8_2:+19691404 | Msa1238840:three_prime_UTR |
| ACCTGAGAGTTGTGTAGCAT+TGG | 0.564259 | 8_2:+19689484 | Msa1238840:CDS |
| CAAAGTTTCCTACATGGTAG+AGG | 0.564462 | 8_2:-19690955 | None:intergenic |
| TTCTTTGAGACCAAGGCTTG+GGG | 0.565955 | 8_2:+19689457 | Msa1238840:CDS |
| TGGTAGAGGATCCAGTGCCC+TGG | 0.568450 | 8_2:-19690941 | None:intergenic |
| CTGGTGCTGAATTAGGGAAG+AGG | 0.572659 | 8_2:+19689663 | Msa1238840:CDS |
| ATCCCAGCCATGGATGTGCT+CGG | 0.573548 | 8_2:-19690846 | None:intergenic |
| ATTTGGTGGCTTGAAGTGGA+AGG | 0.573893 | 8_2:+19690725 | Msa1238840:CDS |
| TAGAGACAAAGTTTCCTACA+TGG | 0.576728 | 8_2:-19690961 | None:intergenic |
| TGTAAGACCGAGCACATCCA+TGG | 0.577774 | 8_2:+19690839 | Msa1238840:CDS |
| AGTTCTTTGAGACCAAGGCT+TGG | 0.578094 | 8_2:+19689455 | Msa1238840:CDS |
| TTCCTCATGTGGATGTGATG+GGG | 0.578218 | 8_2:+19689421 | Msa1238840:CDS |
| ATTGTAGTTCTTTGAGACCA+AGG | 0.580131 | 8_2:+19689450 | Msa1238840:CDS |
| AAATTCAGATTCTGGGTCTG+TGG | 0.580655 | 8_2:+19689228 | Msa1238840:five_prime_UTR |
| AGTGCGTGTTTGGTAGCATA+TGG | 0.583628 | 8_2:-19691204 | None:intergenic |
| TGGCTAGATAAGAGGACTGG+TGG | 0.585604 | 8_2:+19690245 | Msa1238840:CDS |
| TCAGGTATATCCCCAAGCCT+TGG | 0.585715 | 8_2:-19689467 | None:intergenic |
| TGCTTTCTCAAAGAATGGAA+TGG | 0.588397 | 8_2:+19691400 | Msa1238840:three_prime_UTR |
| ATGATAAACTCATAATTCAA+CGG | 0.590373 | 8_2:-19689608 | None:intergenic |
| TGGATTGTCCAAATGAGTAT+GGG | 0.593977 | 8_2:-19690921 | None:intergenic |
| GCTAGATAAGAGGACTGGTG+GGG | 0.594259 | 8_2:+19690247 | Msa1238840:CDS |
| GTTGATGTATTTGGATCCAC+CGG | 0.598664 | 8_2:+19689508 | Msa1238840:CDS |
| TTTGTTTGACAATGGAACCA+AGG | 0.599995 | 8_2:+19689715 | Msa1238840:CDS |
| TGGTGCTGAATTAGGGAAGA+GGG | 0.601797 | 8_2:+19689664 | Msa1238840:CDS |
| GCTTCTTGGATGACCTGCCA+AGG | 0.607702 | 8_2:-19690802 | None:intergenic |
| GATTGCACTCATACCAAGGG+TGG | 0.619652 | 8_2:+19691031 | Msa1238840:CDS |
| CACTGGATCCTCTACCATGT+AGG | 0.625677 | 8_2:+19690947 | Msa1238840:CDS |
| ATTTGGCTAGATAAGAGGAC+TGG | 0.635322 | 8_2:+19690242 | Msa1238840:CDS |
| ATCCCCATCACATCCACATG+AGG | 0.636127 | 8_2:-19689423 | None:intergenic |
| CCAAAGCGTTAAGGATTACG+GGG | 0.637475 | 8_2:+19690288 | Msa1238840:CDS |
| GCGTGTTTGGTAGCATATGG+TGG | 0.639137 | 8_2:-19691201 | None:intergenic |
| ACATTTCAACTGAAGAGTCA+AGG | 0.639529 | 8_2:+19690336 | Msa1238840:CDS |
| ATACTCATTTGGACAATCCA+GGG | 0.642583 | 8_2:+19690924 | Msa1238840:CDS |
| GCTACTATTGCATATAAGCA+CGG | 0.643154 | 8_2:-19691068 | None:intergenic |
| AACATGCACTAAGTCAACTC+AGG | 0.643845 | 8_2:-19691143 | None:intergenic |
| GCTAGCTTACATATATCCGG+TGG | 0.658843 | 8_2:-19689524 | None:intergenic |
| TGAATTATGAGTTTATCATG+GGG | 0.664410 | 8_2:+19689612 | Msa1238840:CDS |
| ATAAATACACAAGTCACACA+TGG | 0.668418 | 8_2:-19691347 | None:intergenic |
| ATAGATTGCACTCATACCAA+GGG | 0.671071 | 8_2:+19691028 | Msa1238840:CDS |
| GTGTACTTCAGACTTCACCT+TGG | 0.710985 | 8_2:+19690785 | Msa1238840:CDS |
| GCTCGGTCTTACAAACTCGT+CGG | 0.720767 | 8_2:-19690829 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCTTATAGTTTTATATTT+TGG | + | chr8_2:19689346-19689365 | Msa1238840:five_prime_UTR | 10.0% |
| !!! | ATCTTATAGTTTTATATTTT+GGG | + | chr8_2:19689347-19689366 | Msa1238840:five_prime_UTR | 10.0% |
| !!! | TTTTATTTTTTGTGTATAAA+AGG | + | chr8_2:19689786-19689805 | Msa1238840:intron | 10.0% |
| !!! | TTTATTTTTTGTGTATAAAA+GGG | + | chr8_2:19689787-19689806 | Msa1238840:intron | 10.0% |
| !!! | AATTTTTGGGTTTTATATTT+TGG | + | chr8_2:19689137-19689156 | Msa1238840:five_prime_UTR | 15.0% |
| !!! | ATTTTTGGGTTTTATATTTT+GGG | + | chr8_2:19689138-19689157 | Msa1238840:five_prime_UTR | 15.0% |
| !!! | TCTTATAGTTTTATATTTTG+GGG | + | chr8_2:19689348-19689367 | Msa1238840:five_prime_UTR | 15.0% |
| !!! | TTATGTCAAAAATTTTACTT+TGG | + | chr8_2:19690211-19690230 | Msa1238840:intron | 15.0% |
| !! | GGCAAAAAAAATAAATATTT+CGG | - | chr8_2:19690467-19690486 | None:intergenic | 15.0% |
| !!! | AATTTTCATTTGATAAGTGA+TGG | + | chr8_2:19689054-19689073 | Msa1238840:five_prime_UTR | 20.0% |
| !!! | TTTTTGGGTTTTATATTTTG+GGG | + | chr8_2:19689139-19689158 | Msa1238840:five_prime_UTR | 20.0% |
| !!! | TTTTAGTTAAATTCAGATTC+TGG | + | chr8_2:19689220-19689239 | Msa1238840:five_prime_UTR | 20.0% |
| !! | TTTAGTTAAATTCAGATTCT+GGG | + | chr8_2:19689221-19689240 | Msa1238840:five_prime_UTR | 20.0% |
| !!! | TTTTAGTTGAATTGATATTC+TGG | + | chr8_2:19689315-19689334 | Msa1238840:five_prime_UTR | 20.0% |
| !! | TTTAGTTGAATTGATATTCT+GGG | + | chr8_2:19689316-19689335 | Msa1238840:five_prime_UTR | 20.0% |
| !! | ATGATAAACTCATAATTCAA+CGG | - | chr8_2:19689611-19689630 | None:intergenic | 20.0% |
| !! | TTGAATTATGAGTTTATCAT+GGG | + | chr8_2:19689611-19689630 | Msa1238840:CDS | 20.0% |
| !! | ATGCACACAATATTAATTAA+AGG | - | chr8_2:19689940-19689959 | None:intergenic | 20.0% |
| !! | ACTTATTAGGCTATAATATT+GGG | - | chr8_2:19690026-19690045 | None:intergenic | 20.0% |
| !! | TACTTATTAGGCTATAATAT+TGG | - | chr8_2:19690027-19690046 | None:intergenic | 20.0% |
| !!! | CAAAAATTTTACTTTGGTTT+AGG | + | chr8_2:19690217-19690236 | Msa1238840:intron | 20.0% |
| !! | ATTCTTGATTGTATGTAAAT+AGG | + | chr8_2:19690675-19690694 | Msa1238840:intron | 20.0% |
| !! | GTTACACTTTCATTTATAAT+TGG | - | chr8_2:19691477-19691496 | None:intergenic | 20.0% |
| !!! | TTTTAGTTGAATTCAGATTC+TGG | + | chr8_2:19689023-19689042 | Msa1238840:five_prime_UTR | 25.0% |
| ! | TTTAGTTGAATTCAGATTCT+GGG | + | chr8_2:19689024-19689043 | Msa1238840:five_prime_UTR | 25.0% |
| !!! | TTTTAGTTGAATTCAGATTC+TGG | + | chr8_2:19689023-19689042 | Msa1238840:five_prime_UTR | 25.0% |
| ! | TTTAGTTGAATTCAGATTCT+GGG | + | chr8_2:19689024-19689043 | Msa1238840:five_prime_UTR | 25.0% |
| ! | TCGATAAATTCGATAAATTG+AGG | + | chr8_2:19689279-19689298 | Msa1238840:five_prime_UTR | 25.0% |
| ! | GTTGAATTATGAGTTTATCA+TGG | + | chr8_2:19689610-19689629 | Msa1238840:CDS | 25.0% |
| ! | TGAATTATGAGTTTATCATG+GGG | + | chr8_2:19689612-19689631 | Msa1238840:CDS | 25.0% |
| !!! | TTTTTTTTCCAATACTACCA+AGG | - | chr8_2:19689820-19689839 | None:intergenic | 25.0% |
| ! | CTAACTTATTCTTGCAAAAT+CGG | - | chr8_2:19689915-19689934 | None:intergenic | 25.0% |
| ! | TCGTTATCATAAATTCAAAG+TGG | - | chr8_2:19689982-19690001 | None:intergenic | 25.0% |
| ! | CTTGAATTCGTGATATTAAT+GGG | - | chr8_2:19690091-19690110 | None:intergenic | 25.0% |
| ! | TCTTGAATTCGTGATATTAA+TGG | - | chr8_2:19690092-19690111 | None:intergenic | 25.0% |
| ! | CATGACATAACTTAATAAAG+TGG | - | chr8_2:19690172-19690191 | None:intergenic | 25.0% |
| !! | TTACTTTGGTTTAGGAAATT+TGG | + | chr8_2:19690225-19690244 | Msa1238840:intron | 25.0% |
| !! | TGTGTTTTCATCTTTATGAA+TGG | + | chr8_2:19690422-19690441 | Msa1238840:intron | 25.0% |
| ! | TAGTTATGAAGATTGAAGAA+TGG | + | chr8_2:19690534-19690553 | Msa1238840:intron | 25.0% |
| ! | TTGCTTATCTTCATCAAATT+TGG | + | chr8_2:19690708-19690727 | Msa1238840:CDS | 25.0% |
| !!! | GAAGTGTAAATTGTTTTTGT+AGG | + | chr8_2:19691103-19691122 | Msa1238840:exon | 25.0% |
| !!! | TGTAAATTGTTTTTGTAGGT+AGG | + | chr8_2:19691107-19691126 | Msa1238840:exon | 25.0% |
| !! | TTTTAATGTATTACTTCACC+TGG | - | chr8_2:19691257-19691276 | None:intergenic | 25.0% |
| ATTGGATTCTTCAAGATCTA+TGG | - | chr8_2:19688869-19688888 | None:intergenic | 30.0% | |
| !!! | TAGCTTTTTAGGTTTGACAT+TGG | + | chr8_2:19688959-19688978 | Msa1238840:five_prime_UTR | 30.0% |
| !!! | AGCTTTTTAGGTTTGACATT+GGG | + | chr8_2:19688960-19688979 | Msa1238840:five_prime_UTR | 30.0% |
| ! | ACACAATTGGTTCAAAATTC+AGG | + | chr8_2:19688987-19689006 | Msa1238840:five_prime_UTR | 30.0% |
| !! | GTGATGGATTTGATAAATTG+AGG | + | chr8_2:19689070-19689089 | Msa1238840:five_prime_UTR | 30.0% |
| ! | TTCTGGGTCATTGAAATTTT+TGG | + | chr8_2:19689123-19689142 | Msa1238840:five_prime_UTR | 30.0% |
| ! | TCTGGGTCATTGAAATTTTT+GGG | + | chr8_2:19689124-19689143 | Msa1238840:five_prime_UTR | 30.0% |
| !! | ATTTTGGGGATAAAGTAGTT+TGG | + | chr8_2:19689153-19689172 | Msa1238840:five_prime_UTR | 30.0% |
| !! | ATTTTGGGGATTAACTAGTT+TGG | + | chr8_2:19689362-19689381 | Msa1238840:five_prime_UTR | 30.0% |
| ! | GTTTTGTGTGTGTTGAATAT+GGG | + | chr8_2:19689389-19689408 | Msa1238840:exon | 30.0% |
| !!! | TTCTTTTGCCGATTTTGTTT+GGG | + | chr8_2:19689574-19689593 | Msa1238840:CDS | 30.0% |
| !! | AAGCCTAATTTGTTTGACAA+TGG | + | chr8_2:19689707-19689726 | Msa1238840:CDS | 30.0% |
| GTTCCATTGTCAAACAAATT+AGG | - | chr8_2:19689713-19689732 | None:intergenic | 30.0% | |
| !! | TATAAAAGGGTTTTGATCCT+TGG | + | chr8_2:19689800-19689819 | Msa1238840:intron | 30.0% |
| AACTTAATCTCTTATCATCG+CGG | - | chr8_2:19689850-19689869 | None:intergenic | 30.0% | |
| !! | CTATAATATTGGGTGGATTT+TGG | - | chr8_2:19690016-19690035 | None:intergenic | 30.0% |
| TATTAGGCTATAATATTGGG+TGG | - | chr8_2:19690023-19690042 | None:intergenic | 30.0% | |
| ! | AATGGGTTTCTATTTCACTT+TGG | - | chr8_2:19690074-19690093 | None:intergenic | 30.0% |
| CACATAAAAACTTAGTATCG+TGG | + | chr8_2:19690127-19690146 | Msa1238840:intron | 30.0% | |
| AGTGGAATCAATCAATCAAA+GGG | - | chr8_2:19690488-19690507 | None:intergenic | 30.0% | |
| ! | ATTGATTGATTCCACTGTAT+TGG | + | chr8_2:19690492-19690511 | Msa1238840:intron | 30.0% |
| ! | ACTTTTCCAACTCTTTACAA+TGG | + | chr8_2:19690566-19690585 | Msa1238840:intron | 30.0% |
| TCATAACCATTGTAAAGAGT+TGG | - | chr8_2:19690575-19690594 | None:intergenic | 30.0% | |
| ATCAAGTTCAAACATAACTG+CGG | - | chr8_2:19690647-19690666 | None:intergenic | 30.0% | |
| CTTATCTTCATCAAATTTGG+TGG | + | chr8_2:19690711-19690730 | Msa1238840:CDS | 30.0% | |
| ! | ATTGATTTCCAATTTCCAGT+AGG | + | chr8_2:19690752-19690771 | Msa1238840:CDS | 30.0% |
| TTGATTTCCAATTTCCAGTA+GGG | + | chr8_2:19690753-19690772 | Msa1238840:CDS | 30.0% | |
| AGAAACCAAACATCTATCTT+GGG | - | chr8_2:19691299-19691318 | None:intergenic | 30.0% | |
| AAGAAACCAAACATCTATCT+TGG | - | chr8_2:19691300-19691319 | None:intergenic | 30.0% | |
| ATAAATACACAAGTCACACA+TGG | - | chr8_2:19691350-19691369 | None:intergenic | 30.0% | |
| ! | TGCATGAAAGTGTAACATTA+TGG | + | chr8_2:19691451-19691470 | Msa1238840:three_prime_UTR | 30.0% |
| CTTGAAGAATCCAATTCAAC+CGG | + | chr8_2:19688874-19688893 | Msa1238840:five_prime_UTR | 35.0% | |
| AATCCAATTCAACCGGAAAA+CGG | + | chr8_2:19688881-19688900 | Msa1238840:five_prime_UTR | 35.0% | |
| AAAGCTAGTTGTGGTGAAAT+GGG | - | chr8_2:19688946-19688965 | None:intergenic | 35.0% | |
| AAAAGCTAGTTGTGGTGAAA+TGG | - | chr8_2:19688947-19688966 | None:intergenic | 35.0% | |
| !!! | TTCACCACAACTAGCTTTTT+AGG | + | chr8_2:19688948-19688967 | Msa1238840:five_prime_UTR | 35.0% |
| CAAACCTAAAAAGCTAGTTG+TGG | - | chr8_2:19688955-19688974 | None:intergenic | 35.0% | |
| !!! | TTTTTAGGTTTGACATTGGG+AGG | + | chr8_2:19688963-19688982 | Msa1238840:five_prime_UTR | 35.0% |
| !! | GGTTTTGTGTGTGTTGAATA+TGG | + | chr8_2:19689388-19689407 | Msa1238840:exon | 35.0% |
| !! | ATTGTAGTTCTTTGAGACCA+AGG | + | chr8_2:19689450-19689469 | Msa1238840:CDS | 35.0% |
| !! | AGCATTGGTGTTGATGTATT+TGG | + | chr8_2:19689499-19689518 | Msa1238840:CDS | 35.0% |
| TAAGCTAGCACGATTGAATA+GGG | + | chr8_2:19689538-19689557 | Msa1238840:CDS | 35.0% | |
| !!! | CTTCTTTTGCCGATTTTGTT+TGG | + | chr8_2:19689573-19689592 | Msa1238840:CDS | 35.0% |
| CTTCGATTCCCAAACAAAAT+CGG | - | chr8_2:19689585-19689604 | None:intergenic | 35.0% | |
| TTTGTTTGACAATGGAACCA+AGG | + | chr8_2:19689715-19689734 | Msa1238840:CDS | 35.0% | |
| ! | TGGAACCAAGGTAACAATTT+TGG | + | chr8_2:19689727-19689746 | Msa1238840:intron | 35.0% |
| ATGAGCCAAAATTGTTACCT+TGG | - | chr8_2:19689735-19689754 | None:intergenic | 35.0% | |
| !! | GTTTTGATCCTTGGTAGTAT+TGG | + | chr8_2:19689809-19689828 | Msa1238840:intron | 35.0% |
| !! | AATATTGGGTGGATTTTGGT+TGG | - | chr8_2:19690012-19690031 | None:intergenic | 35.0% |
| AGGAAATTTGGCTAGATAAG+AGG | + | chr8_2:19690237-19690256 | Msa1238840:intron | 35.0% | |
| ACATTTCAACTGAAGAGTCA+AGG | + | chr8_2:19690336-19690355 | Msa1238840:CDS | 35.0% | |
| CAATGAGTCAGGTTCTATAA+TGG | - | chr8_2:19690396-19690415 | None:intergenic | 35.0% | |
| CAGTGGAATCAATCAATCAA+AGG | - | chr8_2:19690489-19690508 | None:intergenic | 35.0% | |
| TCAAGTTCAAACATAACTGC+GGG | - | chr8_2:19690646-19690665 | None:intergenic | 35.0% | |
| GATGAAGATAAGCAACTGTA+TGG | - | chr8_2:19690703-19690722 | None:intergenic | 35.0% | |
| TGGATTGTCCAAATGAGTAT+GGG | - | chr8_2:19690924-19690943 | None:intergenic | 35.0% | |
| ATACTCATTTGGACAATCCA+GGG | + | chr8_2:19690924-19690943 | Msa1238840:CDS | 35.0% | |
| TAGAGACAAAGTTTCCTACA+TGG | - | chr8_2:19690964-19690983 | None:intergenic | 35.0% | |
| AATAGATTGCACTCATACCA+AGG | + | chr8_2:19691027-19691046 | Msa1238840:CDS | 35.0% | |
| ATAGATTGCACTCATACCAA+GGG | + | chr8_2:19691028-19691047 | Msa1238840:CDS | 35.0% | |
| GCTACTATTGCATATAAGCA+CGG | - | chr8_2:19691071-19691090 | None:intergenic | 35.0% | |
| TTAGTGCATGTTTGGTATCA+TGG | + | chr8_2:19691154-19691173 | Msa1238840:three_prime_UTR | 35.0% | |
| !!! | TGGTGGATTTTCTGAAATCA+CGG | - | chr8_2:19691187-19691206 | None:intergenic | 35.0% |
| AAAATTGCTAAGTGCGTGTT+TGG | - | chr8_2:19691217-19691236 | None:intergenic | 35.0% | |
| ! | AAACACGCACTTAGCAATTT+TGG | + | chr8_2:19691216-19691235 | Msa1238840:three_prime_UTR | 35.0% |
| !! | TTAGCAATTTTGGTCGCATA+GGG | + | chr8_2:19691226-19691245 | Msa1238840:three_prime_UTR | 35.0% |
| ! | TATCTTGGGAAGCTTTTTGT+GGG | - | chr8_2:19691285-19691304 | None:intergenic | 35.0% |
| TGTTGTGCTTTCTCAAAGAA+TGG | + | chr8_2:19691395-19691414 | Msa1238840:three_prime_UTR | 35.0% | |
| TGCTTTCTCAAAGAATGGAA+TGG | + | chr8_2:19691400-19691419 | Msa1238840:three_prime_UTR | 35.0% | |
| TTCTCAAAGAATGGAATGGT+TGG | + | chr8_2:19691404-19691423 | Msa1238840:three_prime_UTR | 35.0% | |
| GGGAATTGGCATGAATTTCT+GGG | - | chr8_2:19688926-19688945 | None:intergenic | 40.0% | |
| TGGGAATTGGCATGAATTTC+TGG | - | chr8_2:19688927-19688946 | None:intergenic | 40.0% | |
| AGTTGTGGTGAAATGGGAAT+TGG | - | chr8_2:19688940-19688959 | None:intergenic | 40.0% | |
| TGAATTCAGATTCTGGGTCA+TGG | + | chr8_2:19689030-19689049 | Msa1238840:five_prime_UTR | 40.0% | |
| GGGGATAAAGTAGTTTGGTT+TGG | + | chr8_2:19689158-19689177 | Msa1238840:five_prime_UTR | 40.0% | |
| AAATTCAGATTCTGGGTCTG+TGG | + | chr8_2:19689228-19689247 | Msa1238840:five_prime_UTR | 40.0% | |
| ! | GGGGATTAACTAGTTTGGTT+AGG | + | chr8_2:19689367-19689386 | Msa1238840:five_prime_UTR | 40.0% |
| ! | GGTGCTAATTTTTCCTCATG+TGG | + | chr8_2:19689410-19689429 | Msa1238840:CDS | 40.0% |
| ! | TTTTCCTCATGTGGATGTGA+TGG | + | chr8_2:19689419-19689438 | Msa1238840:CDS | 40.0% |
| TTTCCTCATGTGGATGTGAT+GGG | + | chr8_2:19689420-19689439 | Msa1238840:CDS | 40.0% | |
| GTTGATGTATTTGGATCCAC+CGG | + | chr8_2:19689508-19689527 | Msa1238840:CDS | 40.0% | |
| ! | CGTGCTAGCTTACATATATC+CGG | - | chr8_2:19689530-19689549 | None:intergenic | 40.0% |
| GTAAGCTAGCACGATTGAAT+AGG | + | chr8_2:19689537-19689556 | Msa1238840:CDS | 40.0% | |
| GTTTATCATGGGGAAAGCTT+TGG | + | chr8_2:19689622-19689641 | Msa1238840:CDS | 40.0% | |
| GAGGATGATACTAGTAGTTC+TGG | + | chr8_2:19689644-19689663 | Msa1238840:CDS | 40.0% | |
| !! | AGTAGTTCTGGTGCTGAATT+AGG | + | chr8_2:19689656-19689675 | Msa1238840:CDS | 40.0% |
| !! | GTAGTTCTGGTGCTGAATTA+GGG | + | chr8_2:19689657-19689676 | Msa1238840:CDS | 40.0% |
| ! | CTTGCAAAATCGGCTTTGTA+AGG | - | chr8_2:19689905-19689924 | None:intergenic | 40.0% |
| GACTGCACAAGCTACTTATT+AGG | - | chr8_2:19690039-19690058 | None:intergenic | 40.0% | |
| ATTTGGCTAGATAAGAGGAC+TGG | + | chr8_2:19690242-19690261 | Msa1238840:CDS | 40.0% | |
| ! | CAATTTCCTCCAAAGCGTTA+AGG | + | chr8_2:19690279-19690298 | Msa1238840:CDS | 40.0% |
| ! | CTCCAAAGCGTTAAGGATTA+CGG | + | chr8_2:19690286-19690305 | Msa1238840:CDS | 40.0% |
| ! | TCCAAAGCGTTAAGGATTAC+GGG | + | chr8_2:19690287-19690306 | Msa1238840:CDS | 40.0% |
| ! | GGATTGATGATCGCAGATAT+TGG | + | chr8_2:19690309-19690328 | Msa1238840:CDS | 40.0% |
| ACACAGCATAACAATGAGTC+AGG | - | chr8_2:19690407-19690426 | None:intergenic | 40.0% | |
| AGAAAGTGAGTCCAATACAG+TGG | - | chr8_2:19690506-19690525 | None:intergenic | 40.0% | |
| ATCCAATACCAACTCTACTG+TGG | + | chr8_2:19690594-19690613 | Msa1238840:intron | 40.0% | |
| !! | ATCCACAGTAGAGTTGGTAT+TGG | - | chr8_2:19690599-19690618 | None:intergenic | 40.0% |
| TACCAACTCTACTGTGGATA+TGG | + | chr8_2:19690600-19690619 | Msa1238840:intron | 40.0% | |
| ATCCATATCCACAGTAGAGT+TGG | - | chr8_2:19690605-19690624 | None:intergenic | 40.0% | |
| AAGTTCAAACATAACTGCGG+GGG | - | chr8_2:19690644-19690663 | None:intergenic | 40.0% | |
| CAAGTTCAAACATAACTGCG+GGG | - | chr8_2:19690645-19690664 | None:intergenic | 40.0% | |
| ! | TCAAATTTGGTGGCTTGAAG+TGG | + | chr8_2:19690721-19690740 | Msa1238840:CDS | 40.0% |
| TGTATGTCCCTACTGGAAAT+TGG | - | chr8_2:19690763-19690782 | None:intergenic | 40.0% | |
| TGCTGTATCCCATACTCATT+TGG | + | chr8_2:19690913-19690932 | Msa1238840:CDS | 40.0% | |
| CTGGATTGTCCAAATGAGTA+TGG | - | chr8_2:19690925-19690944 | None:intergenic | 40.0% | |
| CATACTCATTTGGACAATCC+AGG | + | chr8_2:19690923-19690942 | Msa1238840:CDS | 40.0% | |
| CAAAGTTTCCTACATGGTAG+AGG | - | chr8_2:19690958-19690977 | None:intergenic | 40.0% | |
| AACATGCACTAAGTCAACTC+AGG | - | chr8_2:19691146-19691165 | None:intergenic | 40.0% | |
| ! | GAGTTGACTTAGTGCATGTT+TGG | + | chr8_2:19691146-19691165 | Msa1238840:three_prime_UTR | 40.0% |
| !! | CTTAGCAATTTTGGTCGCAT+AGG | + | chr8_2:19691225-19691244 | Msa1238840:three_prime_UTR | 40.0% |
| ! | CTATCTTGGGAAGCTTTTTG+TGG | - | chr8_2:19691286-19691305 | None:intergenic | 40.0% |
| AGCTTCCCAAGATAGATGTT+TGG | + | chr8_2:19691291-19691310 | Msa1238840:three_prime_UTR | 40.0% | |
| GTGTACTCTATTACTTCAGC+TGG | + | chr8_2:19691426-19691445 | Msa1238840:three_prime_UTR | 40.0% | |
| ! | GACATTGGGAGGTACACAAT+TGG | + | chr8_2:19688974-19688993 | Msa1238840:five_prime_UTR | 45.0% |
| TTCCTCATGTGGATGTGATG+GGG | + | chr8_2:19689421-19689440 | Msa1238840:CDS | 45.0% | |
| !! | AGTTCTTTGAGACCAAGGCT+TGG | + | chr8_2:19689455-19689474 | Msa1238840:CDS | 45.0% |
| !! | GTTCTTTGAGACCAAGGCTT+GGG | + | chr8_2:19689456-19689475 | Msa1238840:CDS | 45.0% |
| !! | TTCTTTGAGACCAAGGCTTG+GGG | + | chr8_2:19689457-19689476 | Msa1238840:CDS | 45.0% |
| ACCTGAGAGTTGTGTAGCAT+TGG | + | chr8_2:19689484-19689503 | Msa1238840:CDS | 45.0% | |
| ACCAATGCTACACAACTCTC+AGG | - | chr8_2:19689488-19689507 | None:intergenic | 45.0% | |
| ! | GCTAGCTTACATATATCCGG+TGG | - | chr8_2:19689527-19689546 | None:intergenic | 45.0% |
| ! | TATCATGGGGAAAGCTTTGG+AGG | + | chr8_2:19689625-19689644 | Msa1238840:CDS | 45.0% |
| ! | TGGTGCTGAATTAGGGAAGA+GGG | + | chr8_2:19689664-19689683 | Msa1238840:CDS | 45.0% |
| CGTAATCCTTAACGCTTTGG+AGG | - | chr8_2:19690288-19690307 | None:intergenic | 45.0% | |
| ! | CCAAAGCGTTAAGGATTACG+GGG | + | chr8_2:19690288-19690307 | Msa1238840:CDS | 45.0% |
| TCAACTGAAGAGTCAAGGTG+AGG | + | chr8_2:19690341-19690360 | Msa1238840:intron | 45.0% | |
| ! | ATTTGGTGGCTTGAAGTGGA+AGG | + | chr8_2:19690725-19690744 | Msa1238840:CDS | 45.0% |
| TACACACTGTATGTCCCTAC+TGG | - | chr8_2:19690770-19690789 | None:intergenic | 45.0% | |
| GTGTACTTCAGACTTCACCT+TGG | + | chr8_2:19690785-19690804 | Msa1238840:CDS | 45.0% | |
| !! | CAGGTTTTATATCCCAGCCA+TGG | - | chr8_2:19690859-19690878 | None:intergenic | 45.0% |
| TTTCAGCTGACGACTTCTGA+TGG | + | chr8_2:19690884-19690903 | Msa1238840:CDS | 45.0% | |
| ! | AGTGCGTGTTTGGTAGCATA+TGG | - | chr8_2:19691207-19691226 | None:intergenic | 45.0% |
| !! | ACGCCGTTTTCCGGTTGAAT+TGG | - | chr8_2:19688887-19688906 | None:intergenic | 50.0% |
| ATCCCCATCACATCCACATG+AGG | - | chr8_2:19689426-19689445 | None:intergenic | 50.0% | |
| ! | ATGTGGATGTGATGGGGATG+AGG | + | chr8_2:19689427-19689446 | Msa1238840:CDS | 50.0% |
| TCAGGTATATCCCCAAGCCT+TGG | - | chr8_2:19689470-19689489 | None:intergenic | 50.0% | |
| ! | CTGGTGCTGAATTAGGGAAG+AGG | + | chr8_2:19689663-19689682 | Msa1238840:CDS | 50.0% |
| TGGCTAGATAAGAGGACTGG+TGG | + | chr8_2:19690245-19690264 | Msa1238840:CDS | 50.0% | |
| ! | GGCTAGATAAGAGGACTGGT+GGG | + | chr8_2:19690246-19690265 | Msa1238840:CDS | 50.0% |
| ! | GCTAGATAAGAGGACTGGTG+GGG | + | chr8_2:19690247-19690266 | Msa1238840:CDS | 50.0% |
| CCCCGTAATCCTTAACGCTT+TGG | - | chr8_2:19690291-19690310 | None:intergenic | 50.0% | |
| ACTTCAGACTTCACCTTGGC+AGG | + | chr8_2:19690789-19690808 | Msa1238840:CDS | 50.0% | |
| GCTCGGTCTTACAAACTCGT+CGG | - | chr8_2:19690832-19690851 | None:intergenic | 50.0% | |
| TGTAAGACCGAGCACATCCA+TGG | + | chr8_2:19690839-19690858 | Msa1238840:CDS | 50.0% | |
| GTCGTCAGCTGAAACTTTGC+AGG | - | chr8_2:19690878-19690897 | None:intergenic | 50.0% | |
| ATTTGGACAATCCAGGGCAC+TGG | + | chr8_2:19690930-19690949 | Msa1238840:CDS | 50.0% | |
| CACTGGATCCTCTACCATGT+AGG | + | chr8_2:19690947-19690966 | Msa1238840:CDS | 50.0% | |
| GATTGCACTCATACCAAGGG+TGG | + | chr8_2:19691031-19691050 | Msa1238840:CDS | 50.0% | |
| ! | GCGTGTTTGGTAGCATATGG+TGG | - | chr8_2:19691204-19691223 | None:intergenic | 50.0% |
| ! | GAGGACTGGTGGGGTTTGTT+TGG | + | chr8_2:19690256-19690275 | Msa1238840:CDS | 55.0% |
| GCTTCTTGGATGACCTGCCA+AGG | - | chr8_2:19690805-19690824 | None:intergenic | 55.0% | |
| GGCAGGTCATCCAAGAAGCT+CGG | + | chr8_2:19690806-19690825 | Msa1238840:CDS | 55.0% | |
| ATCCCAGCCATGGATGTGCT+CGG | - | chr8_2:19690849-19690868 | None:intergenic | 55.0% | |
| GTCGACACACAAACCACCCT+TGG | - | chr8_2:19691047-19691066 | None:intergenic | 55.0% | |
| AACTCGTCGGCCGAGCTTCT+TGG | - | chr8_2:19690819-19690838 | None:intergenic | 60.0% | |
| AGACCGAGCACATCCATGGC+TGG | + | chr8_2:19690843-19690862 | Msa1238840:CDS | 60.0% | |
| GACCGAGCACATCCATGGCT+GGG | + | chr8_2:19690844-19690863 | Msa1238840:CDS | 60.0% | |
| TGGTAGAGGATCCAGTGCCC+TGG | - | chr8_2:19690944-19690963 | None:intergenic | 60.0% | |
| TGGTCGCATAGGGTGTGTCC+AGG | + | chr8_2:19691236-19691255 | Msa1238840:three_prime_UTR | 60.0% | |
| !! | CGCGTGCGTACGCCGTTTTC+CGG | - | chr8_2:19688896-19688915 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 19688742 | 19691497 | 19688742 | ID=Msa1238840;Name=Msa1238840 |
| chr8_2 | mRNA | 19688742 | 19691497 | 19688742 | ID=Msa1238840-mRNA-1;Parent=Msa1238840;Name=Msa1238840-mRNA-1;_AED=0.09;_eAED=0.09;_QI=665|1|1|1|1|1|3|386|287 |
| chr8_2 | exon | 19688742 | 19689736 | 19688742 | ID=Msa1238840-mRNA-1:exon:7266;Parent=Msa1238840-mRNA-1 |
| chr8_2 | exon | 19690239 | 19690357 | 19690239 | ID=Msa1238840-mRNA-1:exon:7267;Parent=Msa1238840-mRNA-1 |
| chr8_2 | exon | 19690697 | 19691497 | 19690697 | ID=Msa1238840-mRNA-1:exon:7268;Parent=Msa1238840-mRNA-1 |
| chr8_2 | five_prime_UTR | 19688742 | 19689406 | 19688742 | ID=Msa1238840-mRNA-1:five_prime_utr;Parent=Msa1238840-mRNA-1 |
| chr8_2 | CDS | 19689407 | 19689736 | 19689407 | ID=Msa1238840-mRNA-1:cds;Parent=Msa1238840-mRNA-1 |
| chr8_2 | CDS | 19690239 | 19690357 | 19690239 | ID=Msa1238840-mRNA-1:cds;Parent=Msa1238840-mRNA-1 |
| chr8_2 | CDS | 19690697 | 19691111 | 19690697 | ID=Msa1238840-mRNA-1:cds;Parent=Msa1238840-mRNA-1 |
| chr8_2 | three_prime_UTR | 19691112 | 19691497 | 19691112 | ID=Msa1238840-mRNA-1:three_prime_utr;Parent=Msa1238840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
