AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0371490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371490 MtrunA17_Chr3g0118291 100.000 204 0 0 1 204 1 204 6.78e-150 414
Msa0371490 MtrunA17_Chr2g0282541 99.510 204 1 0 1 204 49 252 1.89e-149 415
Msa0371490 MtrunA17_Chr7g0224171 90.323 62 6 0 1 62 1 62 1.93e-35 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371490 AT4G16720.1 88.235 204 24 0 1 204 1 204 9.00e-122 343
Msa0371490 AT4G17390.1 87.745 204 25 0 1 204 1 204 1.88e-121 342

Find 104 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTGCATTATATCTAGATTT+TGG 0.161408 3_1:-69628503 Msa0371490:three_prime_UTR
CAAATATTTCGAGGTCATTT+TGG 0.206004 3_1:-69628781 Msa0371490:CDS
GTTTCCAAGGGTATTGTTTA+TGG 0.211521 3_1:-69629031 Msa0371490:CDS
AACAACCAAAACGAGTTTCT+AGG 0.272413 3_1:+69628438 None:intergenic
GACGGAAGCTTGGTGGTCTT+AGG 0.284899 3_1:-69628934 Msa0371490:CDS
TCCTGACAAGGCTCGCCGTT+TGG 0.286229 3_1:-69629878 Msa0371490:CDS
TTGGTGAGCCAGTTGATTCT+TGG 0.307622 3_1:+69628726 None:intergenic
TAATGTTAGCTGCTGTAAAA+TGG 0.315562 3_1:-69628149 Msa0371490:three_prime_UTR
CCTGACAAGGCTCGCCGTTT+GGG 0.317524 3_1:-69629877 Msa0371490:CDS
AGTTCCCTGTGCTTGTGGAC+TGG 0.331698 3_1:+69628702 None:intergenic
GTTCCCTGTGCTTGTGGACT+GGG 0.349720 3_1:+69628703 None:intergenic
CATTATTGCAGCAACTCATT+TGG 0.351164 3_1:-69628254 Msa0371490:three_prime_UTR
GAATAGATCAGCATCAATTA+AGG 0.355242 3_1:+69628090 None:intergenic
TTAGGGTTCTCAATTCCTAC+TGG 0.365103 3_1:-69628916 Msa0371490:CDS
TTCAAAGACAAACCGAGAAA+TGG 0.370073 3_1:-69630125 Msa0371490:exon
TGGTGAGCCAGTTGATTCTT+GGG 0.374689 3_1:+69628727 None:intergenic
TAAACAATACCCTTGGAAAC+TGG 0.377401 3_1:+69629034 None:intergenic
CTCGGTTTGTCTTTGAATGA+TGG 0.383887 3_1:+69630131 None:intergenic
GTCCATCCCGCAGGGCAAAC+TGG 0.385467 3_1:-69628608 Msa0371490:CDS
TCTCTTCCAGTTTGCCCTGC+GGG 0.386069 3_1:+69628602 None:intergenic
CATTGCCTAGAAACTCGTTT+TGG 0.398184 3_1:-69628443 Msa0371490:three_prime_UTR
TGCGGGATGGACGGGCTTTG+TGG 0.407354 3_1:+69628619 None:intergenic
TCATGCAACGTGTGAGGTGC+TGG 0.410863 3_1:-69629948 Msa0371490:CDS
ATGGATGCATACCCATTTCT+CGG 0.413861 3_1:+69630113 None:intergenic
TGCTCCTTTGAAACTTGAGT+TGG 0.414015 3_1:+69628984 None:intergenic
AACGGTAACGGCGGAGAGAC+AGG 0.416120 3_1:+69628571 None:intergenic
GTTTGCCCTGCGGGATGGAC+GGG 0.417367 3_1:+69628611 None:intergenic
TAGCTCAGAAACATACTTGT+AGG 0.420670 3_1:+69630002 None:intergenic
TGGGTAACTCCCTGGTTGGT+GGG 0.428376 3_1:+69629004 None:intergenic
CCCAAACGGCGAGCCTTGTC+AGG 0.428600 3_1:+69629877 None:intergenic
GGCTCGCCGTTTGGGTTACA+AGG 0.429123 3_1:-69629869 Msa0371490:CDS
AGTTTGCCCTGCGGGATGGA+CGG 0.430262 3_1:+69628610 None:intergenic
TTCAGGGATATGTTGTGTAC+CGG 0.437893 3_1:-69629087 Msa0371490:intron
AATGACCTCGAAATATTTGA+AGG 0.445755 3_1:+69628785 None:intergenic
GTCTTTGAATGATGGAGATT+AGG 0.446218 3_1:+69630139 None:intergenic
CTTCGTGGTCTCACTTCTGC+TGG 0.448020 3_1:-69628681 Msa0371490:CDS
CTTGTCAGGACGAGTGGGTC+TGG 0.448800 3_1:+69629891 None:intergenic
ACGGAAGCTTGGTGGTCTTA+GGG 0.449544 3_1:-69628933 Msa0371490:CDS
GTAGCGTCACAATGGTGCTC+AGG 0.455850 3_1:-69628116 Msa0371490:three_prime_UTR
TCAAAGACAAACCGAGAAAT+GGG 0.456349 3_1:-69630124 Msa0371490:intron
TTCCAGTTTGCCCTGCGGGA+TGG 0.461159 3_1:+69628606 None:intergenic
CACGAAGTTCCCTGTGCTTG+TGG 0.463265 3_1:+69628697 None:intergenic
ATGGACGGGCTTTGTGGTAA+CGG 0.472327 3_1:+69628625 None:intergenic
TTGGGTAACTCCCTGGTTGG+TGG 0.476932 3_1:+69629003 None:intergenic
GCTCCTTTGAAACTTGAGTT+GGG 0.480540 3_1:+69628985 None:intergenic
TCTGGTGAGACGAACGATAG+AGG 0.481896 3_1:+69629909 None:intergenic
TAGGCGCAGCAAACCCAGTA+AGG 0.491524 3_1:+69630158 None:intergenic
TTCTACCTTCAAATATTTCG+AGG 0.494616 3_1:-69628790 Msa0371490:CDS
CCAACCCAGTCCACAAGCAC+AGG 0.501162 3_1:-69628707 Msa0371490:CDS
CGTGCTGGACGGAAGCTTGG+TGG 0.501934 3_1:-69628941 Msa0371490:CDS
TACGCAGAGGTGGTAGGAAG+AGG 0.502186 3_1:-69629057 Msa0371490:CDS
TTTGGGTTACAAGGCTAAGC+AGG 0.502645 3_1:-69629860 Msa0371490:intron
ACAAAGCCCGTCCATCCCGC+AGG 0.505243 3_1:-69628617 Msa0371490:CDS
ACAAGTATGTTTCTGAGCTA+TGG 0.512701 3_1:-69629999 Msa0371490:CDS
GATATGTTGTGTACCGGGTG+AGG 0.521531 3_1:-69629081 Msa0371490:CDS
GAGCGTGCTGGACGGAAGCT+TGG 0.530059 3_1:-69628944 Msa0371490:CDS
CTTACCATAAACAATACCCT+TGG 0.531543 3_1:+69629027 None:intergenic
CCTGTGCTTGTGGACTGGGT+TGG 0.541785 3_1:+69628707 None:intergenic
TAGGAAGAGGCCAGTTTCCA+AGG 0.541808 3_1:-69629044 Msa0371490:CDS
GCGAGCCTTGTCAGGACGAG+TGG 0.547527 3_1:+69629885 None:intergenic
GAAATGACCCAAGAATCAAC+TGG 0.550461 3_1:-69628734 Msa0371490:CDS
TTATGGTAAGCCCACCAACC+AGG 0.550892 3_1:-69629014 Msa0371490:CDS
TGAGGGTACGCAGAGGTGGT+AGG 0.551486 3_1:-69629063 Msa0371490:CDS
ACTTGAGTTGGGTAACTCCC+TGG 0.551881 3_1:+69628996 None:intergenic
TCCGTCGCTGAAGAGCGTGC+TGG 0.554588 3_1:-69628956 Msa0371490:CDS
AACAGAGGTTTGAGTGGCAA+GGG 0.555360 3_1:-69628651 Msa0371490:CDS
TAGGGTTCTCAATTCCTACT+GGG 0.560974 3_1:-69628915 Msa0371490:CDS
CAATTCCTACTGGGTCAATG+AGG 0.563819 3_1:-69628906 Msa0371490:intron
CACCTCTGCGTACCCTCACC+CGG 0.571516 3_1:+69629068 None:intergenic
TCAGGGATATGTTGTGTACC+GGG 0.573183 3_1:-69629086 Msa0371490:intron
TTACCCAACTCAAGTTTCAA+AGG 0.573525 3_1:-69628988 Msa0371490:CDS
AAATAACAAATGATCAAACA+AGG 0.582529 3_1:+69628399 None:intergenic
TCCAGCACGCTCTTCAGCGA+CGG 0.585150 3_1:+69628955 None:intergenic
AAACAGAGGTTTGAGTGGCA+AGG 0.585660 3_1:-69628652 Msa0371490:CDS
TTCTCTTCCAGTTTGCCCTG+CGG 0.587901 3_1:+69628601 None:intergenic
TAGCGTCACAATGGTGCTCA+GGG 0.588976 3_1:-69628115 Msa0371490:three_prime_UTR
TCGCTGAAGAGCGTGCTGGA+CGG 0.595062 3_1:-69628952 Msa0371490:CDS
CATGCAACGTGTGAGGTGCT+GGG 0.596458 3_1:-69629947 Msa0371490:CDS
TCAAGTTTCAAAGGAGCAAG+AGG 0.596680 3_1:-69628979 Msa0371490:CDS
CACAAGCACAGGGAACTTCG+TGG 0.600876 3_1:-69628696 Msa0371490:CDS
CAGACCCACTCGTCCTGACA+AGG 0.605906 3_1:-69629890 Msa0371490:CDS
TATGGTAAGCCCACCAACCA+GGG 0.605988 3_1:-69629013 Msa0371490:CDS
GAGTTTCTAGGCAATGTCAC+AGG 0.607208 3_1:+69628450 None:intergenic
CGGGTGAGGGTACGCAGAGG+TGG 0.609715 3_1:-69629067 Msa0371490:CDS
TTCTAGGCAATGTCACAGGT+AGG 0.614055 3_1:+69628454 None:intergenic
ATATGTTGTGTACCGGGTGA+GGG 0.614513 3_1:-69629080 Msa0371490:CDS
TGCAGTAAAATCAACGGTAA+CGG 0.618711 3_1:+69628559 None:intergenic
CAAAGCCCGTCCATCCCGCA+GGG 0.619537 3_1:-69628616 Msa0371490:CDS
TCTAGGCAATGTCACAGGTA+GGG 0.623163 3_1:+69628455 None:intergenic
GAGTTGGGTAACTCCCTGGT+TGG 0.627619 3_1:+69629000 None:intergenic
AGGAAGAGGCCAGTTTCCAA+GGG 0.629174 3_1:-69629043 Msa0371490:CDS
GCTTAGCCTTGTAACCCAAA+CGG 0.629228 3_1:+69629863 None:intergenic
AATAACTGCAGTAAAATCAA+CGG 0.631423 3_1:+69628553 None:intergenic
CAACCCAGTCCACAAGCACA+GGG 0.632139 3_1:-69628706 Msa0371490:CDS
AAAGAAAACAGAGGTTTGAG+TGG 0.633735 3_1:-69628657 Msa0371490:CDS
ATTCTCTTGTAGCGTCACAA+TGG 0.636926 3_1:-69628124 Msa0371490:three_prime_UTR
ACGGTAACGGCGGAGAGACA+GGG 0.637745 3_1:+69628572 None:intergenic
CGAGCCTTGTCAGGACGAGT+GGG 0.641692 3_1:+69629886 None:intergenic
ACAAACCTCATTGACCCAGT+AGG 0.645250 3_1:+69628901 None:intergenic
TCTGCTGGAAAAGAAAACAG+AGG 0.661682 3_1:-69628666 Msa0371490:CDS
AATAACAAATGATCAAACAA+GGG 0.663287 3_1:+69628400 None:intergenic
AGTAAAATCAACGGTAACGG+CGG 0.665793 3_1:+69628562 None:intergenic
TACCGGGTGAGGGTACGCAG+AGG 0.674254 3_1:-69629070 Msa0371490:CDS
TGCGATTCATGCAACGTGTG+AGG 0.718067 3_1:-69629954 Msa0371490:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAGTCATTTTTTTAAAA+TGG - chr3_1:69628602-69628621 Msa0371490:CDS 10.0%
!!! ATAAGTCATTTTTTTAAAAT+GGG - chr3_1:69628603-69628622 Msa0371490:CDS 10.0%
!!! TAAGTTTTAATATTATGTTT+TGG - chr3_1:69629885-69629904 Msa0371490:CDS 10.0%
!!! AATAAGTCATTTTTTTAAAA+TGG - chr3_1:69628602-69628621 Msa0371490:CDS 10.0%
!!! ATAAGTCATTTTTTTAAAAT+GGG - chr3_1:69628603-69628622 Msa0371490:CDS 10.0%
!!! TAAGTTTTAATATTATGTTT+TGG - chr3_1:69629885-69629904 Msa0371490:CDS 10.0%
!! AAATTTCATATTCATATAGA+AGG - chr3_1:69628767-69628786 Msa0371490:CDS 15.0%
!!! GTTTGTATTTTTATTTTTAC+TGG - chr3_1:69628942-69628961 Msa0371490:CDS 15.0%
!! AAATTTCATATTCATATAGA+AGG - chr3_1:69628767-69628786 Msa0371490:CDS 15.0%
!!! GTTTGTATTTTTATTTTTAC+TGG - chr3_1:69628942-69628961 Msa0371490:CDS 15.0%
!!! TATTGTTGTTATTTGTGAAT+AGG - chr3_1:69628225-69628244 Msa0371490:intron 20.0%
!! TACTAAGAATTAATCACTTA+GGG - chr3_1:69628496-69628515 Msa0371490:three_prime_UTR 20.0%
!!! TTTTTAAAATGGGTTTCAAA+TGG - chr3_1:69628613-69628632 Msa0371490:CDS 20.0%
!! ATCAGACATTAACAAAAATT+TGG + chr3_1:69628872-69628891 None:intergenic 20.0%
!! AATAACAAATGATCAAACAA+GGG + chr3_1:69629855-69629874 None:intergenic 20.0%
!! AAATAACAAATGATCAAACA+AGG + chr3_1:69629856-69629875 None:intergenic 20.0%
!!! TATTGTTGTTATTTGTGAAT+AGG - chr3_1:69628225-69628244 Msa0371490:intron 20.0%
!! TACTAAGAATTAATCACTTA+GGG - chr3_1:69628496-69628515 Msa0371490:three_prime_UTR 20.0%
!!! TTTTTAAAATGGGTTTCAAA+TGG - chr3_1:69628613-69628632 Msa0371490:CDS 20.0%
!! ATCAGACATTAACAAAAATT+TGG + chr3_1:69628872-69628891 None:intergenic 20.0%
!! AATAACAAATGATCAAACAA+GGG + chr3_1:69629855-69629874 None:intergenic 20.0%
!! AAATAACAAATGATCAAACA+AGG + chr3_1:69629856-69629875 None:intergenic 20.0%
! GTACTAAGAATTAATCACTT+AGG - chr3_1:69628495-69628514 Msa0371490:three_prime_UTR 25.0%
!! ACAAAAAATTGATAGTCTCT+AGG + chr3_1:69628836-69628855 None:intergenic 25.0%
!!! TAGAGACTATCAATTTTTTG+TGG - chr3_1:69628835-69628854 Msa0371490:intron 25.0%
!!! GTAATTGACAAATTTTAGCA+AGG + chr3_1:69629057-69629076 None:intergenic 25.0%
! AATAACTGCAGTAAAATCAA+CGG + chr3_1:69629702-69629721 None:intergenic 25.0%
!! AGTGCATTATATCTAGATTT+TGG - chr3_1:69629749-69629768 Msa0371490:intron 25.0%
! CAAATCAAAACAAAAAAGGA+AGG + chr3_1:69629921-69629940 None:intergenic 25.0%
! GTGTCAAATCAAAACAAAAA+AGG + chr3_1:69629925-69629944 None:intergenic 25.0%
! GTACTAAGAATTAATCACTT+AGG - chr3_1:69628495-69628514 Msa0371490:three_prime_UTR 25.0%
!! ACAAAAAATTGATAGTCTCT+AGG + chr3_1:69628836-69628855 None:intergenic 25.0%
!!! TAGAGACTATCAATTTTTTG+TGG - chr3_1:69628835-69628854 Msa0371490:intron 25.0%
!!! GTAATTGACAAATTTTAGCA+AGG + chr3_1:69629057-69629076 None:intergenic 25.0%
! AATAACTGCAGTAAAATCAA+CGG + chr3_1:69629702-69629721 None:intergenic 25.0%
!! AGTGCATTATATCTAGATTT+TGG - chr3_1:69629749-69629768 Msa0371490:intron 25.0%
! CAAATCAAAACAAAAAAGGA+AGG + chr3_1:69629921-69629940 None:intergenic 25.0%
! GTGTCAAATCAAAACAAAAA+AGG + chr3_1:69629925-69629944 None:intergenic 25.0%
ATCATACAGAAACAAAAGCA+TGG + chr3_1:69628180-69628199 None:intergenic 30.0%
!! ATTTGTTCTTGTTGATTCTC+TGG - chr3_1:69628451-69628470 Msa0371490:three_prime_UTR 30.0%
!! GCAAATCACAAATTTTAGCA+AGG + chr3_1:69628996-69629015 None:intergenic 30.0%
CATGTTTACAAAATGAAGCA+AGG + chr3_1:69629118-69629137 None:intergenic 30.0%
TGTAATTGTCACATCATTTC+AGG - chr3_1:69629148-69629167 Msa0371490:intron 30.0%
GTAATTGTCACATCATTTCA+GGG - chr3_1:69629149-69629168 Msa0371490:intron 30.0%
GAACTAGTTGAAGTTCAATT+TGG - chr3_1:69629384-69629403 Msa0371490:intron 30.0%
TAGCACAAAACAAAACAATG+GGG + chr3_1:69629437-69629456 None:intergenic 30.0%
GTAGCACAAAACAAAACAAT+GGG + chr3_1:69629438-69629457 None:intergenic 30.0%
TGTAGCACAAAACAAAACAA+TGG + chr3_1:69629439-69629458 None:intergenic 30.0%
!!! ATTGTTTTGTTTTGTGCTAC+AGG - chr3_1:69629438-69629457 Msa0371490:intron 30.0%
TTCTACCTTCAAATATTTCG+AGG - chr3_1:69629462-69629481 Msa0371490:intron 30.0%
AATGACCTCGAAATATTTGA+AGG + chr3_1:69629470-69629489 None:intergenic 30.0%
! CAAATATTTCGAGGTCATTT+TGG - chr3_1:69629471-69629490 Msa0371490:intron 30.0%
!!! TTTTGTGTTGCTTCATTTTC+TGG - chr3_1:69629720-69629739 Msa0371490:intron 30.0%
ATCAAAACAAAAAAGGAAGG+CGG + chr3_1:69629918-69629937 None:intergenic 30.0%
! TCCCTATTACTGCAAATTTT+TGG - chr3_1:69629950-69629969 Msa0371490:CDS 30.0%
CCCAAAAATTTGCAGTAATA+GGG + chr3_1:69629954-69629973 None:intergenic 30.0%
! CCCTATTACTGCAAATTTTT+GGG - chr3_1:69629951-69629970 Msa0371490:CDS 30.0%
ACCCAAAAATTTGCAGTAAT+AGG + chr3_1:69629955-69629974 None:intergenic 30.0%
TAATGTTAGCTGCTGTAAAA+TGG - chr3_1:69630103-69630122 Msa0371490:intron 30.0%
ATCATACAGAAACAAAAGCA+TGG + chr3_1:69628180-69628199 None:intergenic 30.0%
!! ATTTGTTCTTGTTGATTCTC+TGG - chr3_1:69628451-69628470 Msa0371490:three_prime_UTR 30.0%
!! GCAAATCACAAATTTTAGCA+AGG + chr3_1:69628996-69629015 None:intergenic 30.0%
CATGTTTACAAAATGAAGCA+AGG + chr3_1:69629118-69629137 None:intergenic 30.0%
TGTAATTGTCACATCATTTC+AGG - chr3_1:69629148-69629167 Msa0371490:intron 30.0%
GTAATTGTCACATCATTTCA+GGG - chr3_1:69629149-69629168 Msa0371490:intron 30.0%
GAACTAGTTGAAGTTCAATT+TGG - chr3_1:69629384-69629403 Msa0371490:intron 30.0%
TAGCACAAAACAAAACAATG+GGG + chr3_1:69629437-69629456 None:intergenic 30.0%
GTAGCACAAAACAAAACAAT+GGG + chr3_1:69629438-69629457 None:intergenic 30.0%
TGTAGCACAAAACAAAACAA+TGG + chr3_1:69629439-69629458 None:intergenic 30.0%
!!! ATTGTTTTGTTTTGTGCTAC+AGG - chr3_1:69629438-69629457 Msa0371490:intron 30.0%
TTCTACCTTCAAATATTTCG+AGG - chr3_1:69629462-69629481 Msa0371490:intron 30.0%
AATGACCTCGAAATATTTGA+AGG + chr3_1:69629470-69629489 None:intergenic 30.0%
! CAAATATTTCGAGGTCATTT+TGG - chr3_1:69629471-69629490 Msa0371490:intron 30.0%
!!! TTTTGTGTTGCTTCATTTTC+TGG - chr3_1:69629720-69629739 Msa0371490:intron 30.0%
ATCAAAACAAAAAAGGAAGG+CGG + chr3_1:69629918-69629937 None:intergenic 30.0%
! TCCCTATTACTGCAAATTTT+TGG - chr3_1:69629950-69629969 Msa0371490:CDS 30.0%
CCCAAAAATTTGCAGTAATA+GGG + chr3_1:69629954-69629973 None:intergenic 30.0%
! CCCTATTACTGCAAATTTTT+GGG - chr3_1:69629951-69629970 Msa0371490:CDS 30.0%
ACCCAAAAATTTGCAGTAAT+AGG + chr3_1:69629955-69629974 None:intergenic 30.0%
TAATGTTAGCTGCTGTAAAA+TGG - chr3_1:69630103-69630122 Msa0371490:intron 30.0%
! GTCTTTGAATGATGGAGATT+AGG + chr3_1:69628116-69628135 None:intergenic 35.0%
TTCAAAGACAAACCGAGAAA+TGG - chr3_1:69628127-69628146 Msa0371490:three_prime_UTR 35.0%
TCAAAGACAAACCGAGAAAT+GGG - chr3_1:69628128-69628147 Msa0371490:three_prime_UTR 35.0%
TAGCTCAGAAACATACTTGT+AGG + chr3_1:69628253-69628272 None:intergenic 35.0%
! ACAAGTATGTTTCTGAGCTA+TGG - chr3_1:69628253-69628272 Msa0371490:three_prime_UTR 35.0%
TAAACCATGAACAGCAGAAT+AGG + chr3_1:69628671-69628690 None:intergenic 35.0%
ATGGTTTACTAGTTAACACC+TGG - chr3_1:69628683-69628702 Msa0371490:CDS 35.0%
TGGTTTACTAGTTAACACCT+GGG - chr3_1:69628684-69628703 Msa0371490:CDS 35.0%
TAAACAATACCCTTGGAAAC+TGG + chr3_1:69629221-69629240 None:intergenic 35.0%
!! GTTTCCAAGGGTATTGTTTA+TGG - chr3_1:69629221-69629240 Msa0371490:intron 35.0%
CTTACCATAAACAATACCCT+TGG + chr3_1:69629228-69629247 None:intergenic 35.0%
TTACCCAACTCAAGTTTCAA+AGG - chr3_1:69629264-69629283 Msa0371490:intron 35.0%
ACAAAACAAAACAATGGGGT+TGG + chr3_1:69629433-69629452 None:intergenic 35.0%
AAAGAAAACAGAGGTTTGAG+TGG - chr3_1:69629595-69629614 Msa0371490:intron 35.0%
TGCAGTAAAATCAACGGTAA+CGG + chr3_1:69629696-69629715 None:intergenic 35.0%
AACAACCAAAACGAGTTTCT+AGG + chr3_1:69629817-69629836 None:intergenic 35.0%
!!! AATTTTTGGGTCTTCAAGCA+AGG - chr3_1:69629964-69629983 Msa0371490:CDS 35.0%
CATTATTGCAGCAACTCATT+TGG - chr3_1:69629998-69630017 Msa0371490:CDS 35.0%
! GTCTTTGAATGATGGAGATT+AGG + chr3_1:69628116-69628135 None:intergenic 35.0%
TTCAAAGACAAACCGAGAAA+TGG - chr3_1:69628127-69628146 Msa0371490:three_prime_UTR 35.0%
TCAAAGACAAACCGAGAAAT+GGG - chr3_1:69628128-69628147 Msa0371490:three_prime_UTR 35.0%
TAGCTCAGAAACATACTTGT+AGG + chr3_1:69628253-69628272 None:intergenic 35.0%
! ACAAGTATGTTTCTGAGCTA+TGG - chr3_1:69628253-69628272 Msa0371490:three_prime_UTR 35.0%
TAAACCATGAACAGCAGAAT+AGG + chr3_1:69628671-69628690 None:intergenic 35.0%
ATGGTTTACTAGTTAACACC+TGG - chr3_1:69628683-69628702 Msa0371490:CDS 35.0%
TGGTTTACTAGTTAACACCT+GGG - chr3_1:69628684-69628703 Msa0371490:CDS 35.0%
TAAACAATACCCTTGGAAAC+TGG + chr3_1:69629221-69629240 None:intergenic 35.0%
!! GTTTCCAAGGGTATTGTTTA+TGG - chr3_1:69629221-69629240 Msa0371490:intron 35.0%
CTTACCATAAACAATACCCT+TGG + chr3_1:69629228-69629247 None:intergenic 35.0%
TTACCCAACTCAAGTTTCAA+AGG - chr3_1:69629264-69629283 Msa0371490:intron 35.0%
ACAAAACAAAACAATGGGGT+TGG + chr3_1:69629433-69629452 None:intergenic 35.0%
AAAGAAAACAGAGGTTTGAG+TGG - chr3_1:69629595-69629614 Msa0371490:intron 35.0%
TGCAGTAAAATCAACGGTAA+CGG + chr3_1:69629696-69629715 None:intergenic 35.0%
AACAACCAAAACGAGTTTCT+AGG + chr3_1:69629817-69629836 None:intergenic 35.0%
!!! AATTTTTGGGTCTTCAAGCA+AGG - chr3_1:69629964-69629983 Msa0371490:CDS 35.0%
CATTATTGCAGCAACTCATT+TGG - chr3_1:69629998-69630017 Msa0371490:CDS 35.0%
! CTCGGTTTGTCTTTGAATGA+TGG + chr3_1:69628124-69628143 None:intergenic 40.0%
ATGGATGCATACCCATTTCT+CGG + chr3_1:69628142-69628161 None:intergenic 40.0%
ATGGAGAATCGAAGAGTAGA+TGG + chr3_1:69628161-69628180 None:intergenic 40.0%
TCATCCTATTCTGCTGTTCA+TGG - chr3_1:69628664-69628683 Msa0371490:CDS 40.0%
TTTACTAGTTAACACCTGGG+TGG - chr3_1:69628687-69628706 Msa0371490:CDS 40.0%
TTACTAGTTAACACCTGGGT+GGG - chr3_1:69628688-69628707 Msa0371490:CDS 40.0%
GGGGCAGGAATTACAATAAT+TGG - chr3_1:69628708-69628727 Msa0371490:CDS 40.0%
TTCAGGGATATGTTGTGTAC+CGG - chr3_1:69629165-69629184 Msa0371490:intron 40.0%
!! GCTCCTTTGAAACTTGAGTT+GGG + chr3_1:69629270-69629289 None:intergenic 40.0%
!! TGCTCCTTTGAAACTTGAGT+TGG + chr3_1:69629271-69629290 None:intergenic 40.0%
TCAAGTTTCAAAGGAGCAAG+AGG - chr3_1:69629273-69629292 Msa0371490:intron 40.0%
TTAGGGTTCTCAATTCCTAC+TGG - chr3_1:69629336-69629355 Msa0371490:intron 40.0%
TAGGGTTCTCAATTCCTACT+GGG - chr3_1:69629337-69629356 Msa0371490:intron 40.0%
TCAATTTGGTTGTGATGTGC+TGG - chr3_1:69629398-69629417 Msa0371490:intron 40.0%
GAAATGACCCAAGAATCAAC+TGG - chr3_1:69629518-69629537 Msa0371490:intron 40.0%
TCTGCTGGAAAAGAAAACAG+AGG - chr3_1:69629586-69629605 Msa0371490:intron 40.0%
! AGTAAAATCAACGGTAACGG+CGG + chr3_1:69629693-69629712 None:intergenic 40.0%
! CATTGCCTAGAAACTCGTTT+TGG - chr3_1:69629809-69629828 Msa0371490:intron 40.0%
ATTCTCTTGTAGCGTCACAA+TGG - chr3_1:69630128-69630147 Msa0371490:exon 40.0%
! CTCGGTTTGTCTTTGAATGA+TGG + chr3_1:69628124-69628143 None:intergenic 40.0%
ATGGATGCATACCCATTTCT+CGG + chr3_1:69628142-69628161 None:intergenic 40.0%
ATGGAGAATCGAAGAGTAGA+TGG + chr3_1:69628161-69628180 None:intergenic 40.0%
TCATCCTATTCTGCTGTTCA+TGG - chr3_1:69628664-69628683 Msa0371490:CDS 40.0%
TTTACTAGTTAACACCTGGG+TGG - chr3_1:69628687-69628706 Msa0371490:CDS 40.0%
TTACTAGTTAACACCTGGGT+GGG - chr3_1:69628688-69628707 Msa0371490:CDS 40.0%
GGGGCAGGAATTACAATAAT+TGG - chr3_1:69628708-69628727 Msa0371490:CDS 40.0%
TTCAGGGATATGTTGTGTAC+CGG - chr3_1:69629165-69629184 Msa0371490:intron 40.0%
!! GCTCCTTTGAAACTTGAGTT+GGG + chr3_1:69629270-69629289 None:intergenic 40.0%
!! TGCTCCTTTGAAACTTGAGT+TGG + chr3_1:69629271-69629290 None:intergenic 40.0%
TCAAGTTTCAAAGGAGCAAG+AGG - chr3_1:69629273-69629292 Msa0371490:intron 40.0%
TTAGGGTTCTCAATTCCTAC+TGG - chr3_1:69629336-69629355 Msa0371490:intron 40.0%
TAGGGTTCTCAATTCCTACT+GGG - chr3_1:69629337-69629356 Msa0371490:intron 40.0%
TCAATTTGGTTGTGATGTGC+TGG - chr3_1:69629398-69629417 Msa0371490:intron 40.0%
GAAATGACCCAAGAATCAAC+TGG - chr3_1:69629518-69629537 Msa0371490:intron 40.0%
TCTGCTGGAAAAGAAAACAG+AGG - chr3_1:69629586-69629605 Msa0371490:intron 40.0%
! AGTAAAATCAACGGTAACGG+CGG + chr3_1:69629693-69629712 None:intergenic 40.0%
! CATTGCCTAGAAACTCGTTT+TGG - chr3_1:69629809-69629828 Msa0371490:intron 40.0%
ATTCTCTTGTAGCGTCACAA+TGG - chr3_1:69630128-69630147 Msa0371490:exon 40.0%
!! GCTTAGCCTTGTAACCCAAA+CGG + chr3_1:69628392-69628411 None:intergenic 45.0%
! TTTGGGTTACAAGGCTAAGC+AGG - chr3_1:69628392-69628411 Msa0371490:three_prime_UTR 45.0%
TACTAGTTAACACCTGGGTG+GGG - chr3_1:69628689-69628708 Msa0371490:CDS 45.0%
GGTCTTGAGCAATGGTTCAA+AGG + chr3_1:69628804-69628823 None:intergenic 45.0%
! CTGTACATGGTCTTGAGCAA+TGG + chr3_1:69628812-69628831 None:intergenic 45.0%
CATTGCTCAAGACCATGTAC+AGG - chr3_1:69628810-69628829 Msa0371490:intron 45.0%
ATAGTCTCTAGGCCTGTACA+TGG + chr3_1:69628825-69628844 None:intergenic 45.0%
TCAGGGATATGTTGTGTACC+GGG - chr3_1:69629166-69629185 Msa0371490:intron 45.0%
ATATGTTGTGTACCGGGTGA+GGG - chr3_1:69629172-69629191 Msa0371490:intron 45.0%
CAATTCCTACTGGGTCAATG+AGG - chr3_1:69629346-69629365 Msa0371490:intron 45.0%
ACAAACCTCATTGACCCAGT+AGG + chr3_1:69629354-69629373 None:intergenic 45.0%
! TGGTGAGCCAGTTGATTCTT+GGG + chr3_1:69629528-69629547 None:intergenic 45.0%
! TTGGTGAGCCAGTTGATTCT+TGG + chr3_1:69629529-69629548 None:intergenic 45.0%
AAACAGAGGTTTGAGTGGCA+AGG - chr3_1:69629600-69629619 Msa0371490:intron 45.0%
AACAGAGGTTTGAGTGGCAA+GGG - chr3_1:69629601-69629620 Msa0371490:intron 45.0%
TCTAGGCAATGTCACAGGTA+GGG + chr3_1:69629800-69629819 None:intergenic 45.0%
TTCTAGGCAATGTCACAGGT+AGG + chr3_1:69629801-69629820 None:intergenic 45.0%
! GAGTTTCTAGGCAATGTCAC+AGG + chr3_1:69629805-69629824 None:intergenic 45.0%
!! GCTTAGCCTTGTAACCCAAA+CGG + chr3_1:69628392-69628411 None:intergenic 45.0%
! TTTGGGTTACAAGGCTAAGC+AGG - chr3_1:69628392-69628411 Msa0371490:three_prime_UTR 45.0%
TACTAGTTAACACCTGGGTG+GGG - chr3_1:69628689-69628708 Msa0371490:CDS 45.0%
GGTCTTGAGCAATGGTTCAA+AGG + chr3_1:69628804-69628823 None:intergenic 45.0%
! CTGTACATGGTCTTGAGCAA+TGG + chr3_1:69628812-69628831 None:intergenic 45.0%
CATTGCTCAAGACCATGTAC+AGG - chr3_1:69628810-69628829 Msa0371490:intron 45.0%
ATAGTCTCTAGGCCTGTACA+TGG + chr3_1:69628825-69628844 None:intergenic 45.0%
TCAGGGATATGTTGTGTACC+GGG - chr3_1:69629166-69629185 Msa0371490:intron 45.0%
ATATGTTGTGTACCGGGTGA+GGG - chr3_1:69629172-69629191 Msa0371490:intron 45.0%
CAATTCCTACTGGGTCAATG+AGG - chr3_1:69629346-69629365 Msa0371490:intron 45.0%
ACAAACCTCATTGACCCAGT+AGG + chr3_1:69629354-69629373 None:intergenic 45.0%
! TGGTGAGCCAGTTGATTCTT+GGG + chr3_1:69629528-69629547 None:intergenic 45.0%
! TTGGTGAGCCAGTTGATTCT+TGG + chr3_1:69629529-69629548 None:intergenic 45.0%
AAACAGAGGTTTGAGTGGCA+AGG - chr3_1:69629600-69629619 Msa0371490:intron 45.0%
AACAGAGGTTTGAGTGGCAA+GGG - chr3_1:69629601-69629620 Msa0371490:intron 45.0%
TCTAGGCAATGTCACAGGTA+GGG + chr3_1:69629800-69629819 None:intergenic 45.0%
TTCTAGGCAATGTCACAGGT+AGG + chr3_1:69629801-69629820 None:intergenic 45.0%
! GAGTTTCTAGGCAATGTCAC+AGG + chr3_1:69629805-69629824 None:intergenic 45.0%
TGCGATTCATGCAACGTGTG+AGG - chr3_1:69628298-69628317 Msa0371490:three_prime_UTR 50.0%
TCTGGTGAGACGAACGATAG+AGG + chr3_1:69628346-69628365 None:intergenic 50.0%
GATATGTTGTGTACCGGGTG+AGG - chr3_1:69629171-69629190 Msa0371490:intron 50.0%
TAGGAAGAGGCCAGTTTCCA+AGG - chr3_1:69629208-69629227 Msa0371490:intron 50.0%
AGGAAGAGGCCAGTTTCCAA+GGG - chr3_1:69629209-69629228 Msa0371490:intron 50.0%
TTATGGTAAGCCCACCAACC+AGG - chr3_1:69629238-69629257 Msa0371490:intron 50.0%
TATGGTAAGCCCACCAACCA+GGG - chr3_1:69629239-69629258 Msa0371490:intron 50.0%
!! ACTTGAGTTGGGTAACTCCC+TGG + chr3_1:69629259-69629278 None:intergenic 50.0%
! ACGGAAGCTTGGTGGTCTTA+GGG - chr3_1:69629319-69629338 Msa0371490:intron 50.0%
! TTTGGTTGTGATGTGCTGGC+TGG - chr3_1:69629402-69629421 Msa0371490:intron 50.0%
! ATGGACGGGCTTTGTGGTAA+CGG + chr3_1:69629630-69629649 None:intergenic 50.0%
TTCTCTTCCAGTTTGCCCTG+CGG + chr3_1:69629654-69629673 None:intergenic 50.0%
TAGCGTCACAATGGTGCTCA+GGG - chr3_1:69630137-69630156 Msa0371490:five_prime_UTR 50.0%
TGCGATTCATGCAACGTGTG+AGG - chr3_1:69628298-69628317 Msa0371490:three_prime_UTR 50.0%
TCTGGTGAGACGAACGATAG+AGG + chr3_1:69628346-69628365 None:intergenic 50.0%
GATATGTTGTGTACCGGGTG+AGG - chr3_1:69629171-69629190 Msa0371490:intron 50.0%
TAGGAAGAGGCCAGTTTCCA+AGG - chr3_1:69629208-69629227 Msa0371490:intron 50.0%
AGGAAGAGGCCAGTTTCCAA+GGG - chr3_1:69629209-69629228 Msa0371490:intron 50.0%
TTATGGTAAGCCCACCAACC+AGG - chr3_1:69629238-69629257 Msa0371490:intron 50.0%
TATGGTAAGCCCACCAACCA+GGG - chr3_1:69629239-69629258 Msa0371490:intron 50.0%
!! ACTTGAGTTGGGTAACTCCC+TGG + chr3_1:69629259-69629278 None:intergenic 50.0%
! ACGGAAGCTTGGTGGTCTTA+GGG - chr3_1:69629319-69629338 Msa0371490:intron 50.0%
! TTTGGTTGTGATGTGCTGGC+TGG - chr3_1:69629402-69629421 Msa0371490:intron 50.0%
! ATGGACGGGCTTTGTGGTAA+CGG + chr3_1:69629630-69629649 None:intergenic 50.0%
TTCTCTTCCAGTTTGCCCTG+CGG + chr3_1:69629654-69629673 None:intergenic 50.0%
TAGCGTCACAATGGTGCTCA+GGG - chr3_1:69630137-69630156 Msa0371490:five_prime_UTR 50.0%
TCATGCAACGTGTGAGGTGC+TGG - chr3_1:69628304-69628323 Msa0371490:three_prime_UTR 55.0%
! CATGCAACGTGTGAGGTGCT+GGG - chr3_1:69628305-69628324 Msa0371490:three_prime_UTR 55.0%
TTGTAATTCCTGCCCCACCC+AGG + chr3_1:69628704-69628723 None:intergenic 55.0%
TACGCAGAGGTGGTAGGAAG+AGG - chr3_1:69629195-69629214 Msa0371490:intron 55.0%
TGGGTAACTCCCTGGTTGGT+GGG + chr3_1:69629251-69629270 None:intergenic 55.0%
TTGGGTAACTCCCTGGTTGG+TGG + chr3_1:69629252-69629271 None:intergenic 55.0%
GAGTTGGGTAACTCCCTGGT+TGG + chr3_1:69629255-69629274 None:intergenic 55.0%
! GACGGAAGCTTGGTGGTCTT+AGG - chr3_1:69629318-69629337 Msa0371490:intron 55.0%
CAACCCAGTCCACAAGCACA+GGG - chr3_1:69629546-69629565 Msa0371490:intron 55.0%
GTTCCCTGTGCTTGTGGACT+GGG + chr3_1:69629552-69629571 None:intergenic 55.0%
AGTTCCCTGTGCTTGTGGAC+TGG + chr3_1:69629553-69629572 None:intergenic 55.0%
CACGAAGTTCCCTGTGCTTG+TGG + chr3_1:69629558-69629577 None:intergenic 55.0%
CACAAGCACAGGGAACTTCG+TGG - chr3_1:69629556-69629575 Msa0371490:intron 55.0%
CTTCGTGGTCTCACTTCTGC+TGG - chr3_1:69629571-69629590 Msa0371490:intron 55.0%
TCTCTTCCAGTTTGCCCTGC+GGG + chr3_1:69629653-69629672 None:intergenic 55.0%
GTAGCGTCACAATGGTGCTC+AGG - chr3_1:69630136-69630155 Msa0371490:five_prime_UTR 55.0%
TCATGCAACGTGTGAGGTGC+TGG - chr3_1:69628304-69628323 Msa0371490:three_prime_UTR 55.0%
! CATGCAACGTGTGAGGTGCT+GGG - chr3_1:69628305-69628324 Msa0371490:three_prime_UTR 55.0%
TTGTAATTCCTGCCCCACCC+AGG + chr3_1:69628704-69628723 None:intergenic 55.0%
TACGCAGAGGTGGTAGGAAG+AGG - chr3_1:69629195-69629214 Msa0371490:intron 55.0%
TGGGTAACTCCCTGGTTGGT+GGG + chr3_1:69629251-69629270 None:intergenic 55.0%
TTGGGTAACTCCCTGGTTGG+TGG + chr3_1:69629252-69629271 None:intergenic 55.0%
GAGTTGGGTAACTCCCTGGT+TGG + chr3_1:69629255-69629274 None:intergenic 55.0%
! GACGGAAGCTTGGTGGTCTT+AGG - chr3_1:69629318-69629337 Msa0371490:intron 55.0%
CAACCCAGTCCACAAGCACA+GGG - chr3_1:69629546-69629565 Msa0371490:intron 55.0%
GTTCCCTGTGCTTGTGGACT+GGG + chr3_1:69629552-69629571 None:intergenic 55.0%
AGTTCCCTGTGCTTGTGGAC+TGG + chr3_1:69629553-69629572 None:intergenic 55.0%
CACGAAGTTCCCTGTGCTTG+TGG + chr3_1:69629558-69629577 None:intergenic 55.0%
CACAAGCACAGGGAACTTCG+TGG - chr3_1:69629556-69629575 Msa0371490:intron 55.0%
CTTCGTGGTCTCACTTCTGC+TGG - chr3_1:69629571-69629590 Msa0371490:intron 55.0%
TCTCTTCCAGTTTGCCCTGC+GGG + chr3_1:69629653-69629672 None:intergenic 55.0%
GTAGCGTCACAATGGTGCTC+AGG - chr3_1:69630136-69630155 Msa0371490:five_prime_UTR 55.0%
CTTGTCAGGACGAGTGGGTC+TGG + chr3_1:69628364-69628383 None:intergenic 60.0%
CAGACCCACTCGTCCTGACA+AGG - chr3_1:69628362-69628381 Msa0371490:three_prime_UTR 60.0%
! CGAGCCTTGTCAGGACGAGT+GGG + chr3_1:69628369-69628388 None:intergenic 60.0%
TCCTGACAAGGCTCGCCGTT+TGG - chr3_1:69628374-69628393 Msa0371490:three_prime_UTR 60.0%
CCTGACAAGGCTCGCCGTTT+GGG - chr3_1:69628375-69628394 Msa0371490:three_prime_UTR 60.0%
! GGCTCGCCGTTTGGGTTACA+AGG - chr3_1:69628383-69628402 Msa0371490:three_prime_UTR 60.0%
AGTTAACACCTGGGTGGGGC+AGG - chr3_1:69628693-69628712 Msa0371490:CDS 60.0%
! TGAGGGTACGCAGAGGTGGT+AGG - chr3_1:69629189-69629208 Msa0371490:intron 60.0%
TCCAGCACGCTCTTCAGCGA+CGG + chr3_1:69629300-69629319 None:intergenic 60.0%
! TCGCTGAAGAGCGTGCTGGA+CGG - chr3_1:69629300-69629319 Msa0371490:intron 60.0%
!! CCTGTGCTTGTGGACTGGGT+TGG + chr3_1:69629548-69629567 None:intergenic 60.0%
CCAACCCAGTCCACAAGCAC+AGG - chr3_1:69629545-69629564 Msa0371490:intron 60.0%
AGTTTGCCCTGCGGGATGGA+CGG + chr3_1:69629645-69629664 None:intergenic 60.0%
TTCCAGTTTGCCCTGCGGGA+TGG + chr3_1:69629649-69629668 None:intergenic 60.0%
! ACGGTAACGGCGGAGAGACA+GGG + chr3_1:69629683-69629702 None:intergenic 60.0%
! AACGGTAACGGCGGAGAGAC+AGG + chr3_1:69629684-69629703 None:intergenic 60.0%
CTTGTCAGGACGAGTGGGTC+TGG + chr3_1:69628364-69628383 None:intergenic 60.0%
CAGACCCACTCGTCCTGACA+AGG - chr3_1:69628362-69628381 Msa0371490:three_prime_UTR 60.0%
! CGAGCCTTGTCAGGACGAGT+GGG + chr3_1:69628369-69628388 None:intergenic 60.0%
TCCTGACAAGGCTCGCCGTT+TGG - chr3_1:69628374-69628393 Msa0371490:three_prime_UTR 60.0%
CCTGACAAGGCTCGCCGTTT+GGG - chr3_1:69628375-69628394 Msa0371490:three_prime_UTR 60.0%
! GGCTCGCCGTTTGGGTTACA+AGG - chr3_1:69628383-69628402 Msa0371490:three_prime_UTR 60.0%
AGTTAACACCTGGGTGGGGC+AGG - chr3_1:69628693-69628712 Msa0371490:CDS 60.0%
! TGAGGGTACGCAGAGGTGGT+AGG - chr3_1:69629189-69629208 Msa0371490:intron 60.0%
TCCAGCACGCTCTTCAGCGA+CGG + chr3_1:69629300-69629319 None:intergenic 60.0%
! TCGCTGAAGAGCGTGCTGGA+CGG - chr3_1:69629300-69629319 Msa0371490:intron 60.0%
!! CCTGTGCTTGTGGACTGGGT+TGG + chr3_1:69629548-69629567 None:intergenic 60.0%
CCAACCCAGTCCACAAGCAC+AGG - chr3_1:69629545-69629564 Msa0371490:intron 60.0%
AGTTTGCCCTGCGGGATGGA+CGG + chr3_1:69629645-69629664 None:intergenic 60.0%
TTCCAGTTTGCCCTGCGGGA+TGG + chr3_1:69629649-69629668 None:intergenic 60.0%
! ACGGTAACGGCGGAGAGACA+GGG + chr3_1:69629683-69629702 None:intergenic 60.0%
! AACGGTAACGGCGGAGAGAC+AGG + chr3_1:69629684-69629703 None:intergenic 60.0%
! GCGAGCCTTGTCAGGACGAG+TGG + chr3_1:69628370-69628389 None:intergenic 65.0%
! CCCAAACGGCGAGCCTTGTC+AGG + chr3_1:69628378-69628397 None:intergenic 65.0%
! TACCGGGTGAGGGTACGCAG+AGG - chr3_1:69629182-69629201 Msa0371490:intron 65.0%
CACCTCTGCGTACCCTCACC+CGG + chr3_1:69629187-69629206 None:intergenic 65.0%
! TCCGTCGCTGAAGAGCGTGC+TGG - chr3_1:69629296-69629315 Msa0371490:intron 65.0%
GAGCGTGCTGGACGGAAGCT+TGG - chr3_1:69629308-69629327 Msa0371490:intron 65.0%
CGTGCTGGACGGAAGCTTGG+TGG - chr3_1:69629311-69629330 Msa0371490:intron 65.0%
! TGCGGGATGGACGGGCTTTG+TGG + chr3_1:69629636-69629655 None:intergenic 65.0%
ACAAAGCCCGTCCATCCCGC+AGG - chr3_1:69629635-69629654 Msa0371490:intron 65.0%
CAAAGCCCGTCCATCCCGCA+GGG - chr3_1:69629636-69629655 Msa0371490:intron 65.0%
GTTTGCCCTGCGGGATGGAC+GGG + chr3_1:69629644-69629663 None:intergenic 65.0%
GTCCATCCCGCAGGGCAAAC+TGG - chr3_1:69629644-69629663 Msa0371490:intron 65.0%
! GCGAGCCTTGTCAGGACGAG+TGG + chr3_1:69628370-69628389 None:intergenic 65.0%
! CCCAAACGGCGAGCCTTGTC+AGG + chr3_1:69628378-69628397 None:intergenic 65.0%
! TACCGGGTGAGGGTACGCAG+AGG - chr3_1:69629182-69629201 Msa0371490:intron 65.0%
CACCTCTGCGTACCCTCACC+CGG + chr3_1:69629187-69629206 None:intergenic 65.0%
! TCCGTCGCTGAAGAGCGTGC+TGG - chr3_1:69629296-69629315 Msa0371490:intron 65.0%
GAGCGTGCTGGACGGAAGCT+TGG - chr3_1:69629308-69629327 Msa0371490:intron 65.0%
CGTGCTGGACGGAAGCTTGG+TGG - chr3_1:69629311-69629330 Msa0371490:intron 65.0%
! TGCGGGATGGACGGGCTTTG+TGG + chr3_1:69629636-69629655 None:intergenic 65.0%
ACAAAGCCCGTCCATCCCGC+AGG - chr3_1:69629635-69629654 Msa0371490:intron 65.0%
CAAAGCCCGTCCATCCCGCA+GGG - chr3_1:69629636-69629655 Msa0371490:intron 65.0%
GTTTGCCCTGCGGGATGGAC+GGG + chr3_1:69629644-69629663 None:intergenic 65.0%
GTCCATCCCGCAGGGCAAAC+TGG - chr3_1:69629644-69629663 Msa0371490:intron 65.0%
! CGGGTGAGGGTACGCAGAGG+TGG - chr3_1:69629185-69629204 Msa0371490:intron 70.0%
! CGGGTGAGGGTACGCAGAGG+TGG - chr3_1:69629185-69629204 Msa0371490:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 69628097 69630177 69628097 ID=Msa0371490;Name=Msa0371490
chr3_1 mRNA 69628097 69630177 69628097 ID=Msa0371490-mRNA-1;Parent=Msa0371490;Name=Msa0371490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=49|1|1|1|0.75|0.6|5|417|204
chr3_1 exon 69628097 69628188 69628097 ID=Msa0371490-mRNA-1:exon:14922;Parent=Msa0371490-mRNA-1
chr3_1 exon 69628244 69628814 69628244 ID=Msa0371490-mRNA-1:exon:14921;Parent=Msa0371490-mRNA-1
chr3_1 exon 69628907 69629104 69628907 ID=Msa0371490-mRNA-1:exon:14920;Parent=Msa0371490-mRNA-1
chr3_1 exon 69629861 69630027 69629861 ID=Msa0371490-mRNA-1:exon:14919;Parent=Msa0371490-mRNA-1
chr3_1 exon 69630125 69630177 69630125 ID=Msa0371490-mRNA-1:exon:14918;Parent=Msa0371490-mRNA-1
chr3_1 five_prime_UTR 69630129 69630177 69630129 ID=Msa0371490-mRNA-1:five_prime_utr;Parent=Msa0371490-mRNA-1
chr3_1 CDS 69630125 69630128 69630125 ID=Msa0371490-mRNA-1:cds;Parent=Msa0371490-mRNA-1
chr3_1 CDS 69629861 69630027 69629861 ID=Msa0371490-mRNA-1:cds;Parent=Msa0371490-mRNA-1
chr3_1 CDS 69628907 69629104 69628907 ID=Msa0371490-mRNA-1:cds;Parent=Msa0371490-mRNA-1
chr3_1 CDS 69628569 69628814 69628569 ID=Msa0371490-mRNA-1:cds;Parent=Msa0371490-mRNA-1
chr3_1 three_prime_UTR 69628244 69628568 69628244 ID=Msa0371490-mRNA-1:three_prime_utr;Parent=Msa0371490-mRNA-1
chr3_1 three_prime_UTR 69628097 69628188 69628097 ID=Msa0371490-mRNA-1:three_prime_utr;Parent=Msa0371490-mRNA-1
Gene Sequence

>Msa0371490

ATGGGTGCCTACAAGTATGTTTCTGAGCTATGGCGCAAGAAGCAATCTGATGTGATGCGATTCATGCAACGTGTGAGGTGCTGGGAGTATCGTCAGCAATCCTCTATCGTTCGTCTCACCAGACCCACTCGTCCTGACAAGGCTCGCCGTTTGGGTTACAAGGCTAAGCAGGGATATGTTGTGTACCGGGTGAGGGTACGCAGAGGTGGTAGGAAGAGGCCAGTTTCCAAGGGTATTGTTTATGGTAAGCCCACCAACCAGGGAGTTACCCAACTCAAGTTTCAAAGGAGCAAGAGGTCCGTCGCTGAAGAGCGTGCTGGACGGAAGCTTGGTGGTCTTAGGGTTCTCAATTCCTACTGGGTCAATGAGGATTCTACCTTCAAATATTTCGAGGTCATTTTGGTTGATGTTGCTCACAGTGCTATAAGAAATGACCCAAGAATCAACTGGCTCACCAACCCAGTCCACAAGCACAGGGAACTTCGTGGTCTCACTTCTGCTGGAAAAGAAAACAGAGGTTTGAGTGGCAAGGGTCACCGTTACCACAAAGCCCGTCCATCCCGCAGGGCAAACTGGAAGAGAAACAACACCCTGTCTCTCCGCCGTTACCGTTGA

Protein sequence

>Msa0371490

MGAYKYVSELWRKKQSDVMRFMQRVRCWEYRQQSSIVRLTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVSKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTFKYFEVILVDVAHSAIRNDPRINWLTNPVHKHRELRGLTSAGKENRGLSGKGHRYHKARPSRRANWKRNNTLSLRRYR*