Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623290 | XP_013443728.1 | 92.157 | 102 | 8 | 0 | 12 | 113 | 1 | 102 | 2.45e-62 | 195 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623290 | A0A072TLL4 | 92.157 | 102 | 8 | 0 | 12 | 113 | 1 | 102 | 1.17e-62 | 195 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045640 | Msa0623290 | 0.984275 | 4.329879e-160 | -8.615850e-47 |
| Msa0623290 | Msa1081600 | 0.802033 | 6.797137e-49 | -8.615850e-47 |
| Msa0623290 | Msa1166370 | 0.807384 | 5.189155e-50 | -8.615850e-47 |
| Msa0623290 | Msa1371820 | 0.987248 | 1.404470e-169 | -8.615850e-47 |
| Msa0623290 | Msa1376330 | 0.987541 | 1.242135e-170 | -8.615850e-47 |
| Msa0418000 | Msa0623290 | 0.802112 | 6.546884e-49 | -8.615850e-47 |
| Msa0565490 | Msa0623290 | 0.815616 | 8.438938e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623290 | MtrunA17_Chr1g0212831 | 93.000 | 100 | 5 | 1 | 12 | 109 | 1 | 100 | 1.51e-61 | 183 |
| Msa0623290 | MtrunA17_Chr7g0222601 | 76.087 | 92 | 18 | 3 | 21 | 112 | 15 | 102 | 2.10e-42 | 134 |
| Msa0623290 | MtrunA17_Chr7g0263161 | 59.140 | 93 | 28 | 3 | 17 | 107 | 4 | 88 | 9.25e-31 | 104 |
| Msa0623290 | MtrunA17_Chr8g0368511 | 57.143 | 56 | 24 | 0 | 20 | 75 | 48 | 103 | 7.40e-20 | 78.2 |
| Msa0623290 | MtrunA17_Chr1g0171941 | 45.614 | 57 | 31 | 0 | 22 | 78 | 14 | 70 | 1.16e-11 | 59.7 |
| Msa0623290 | MtrunA17_Chr8g0347131 | 43.860 | 57 | 32 | 0 | 22 | 78 | 55 | 111 | 5.14e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623290 | AT3G55240.1 | 69.792 | 96 | 24 | 3 | 12 | 107 | 1 | 91 | 5.17e-41 | 131 |
| Msa0623290 | AT3G28990.1 | 65.116 | 86 | 28 | 1 | 16 | 101 | 4 | 87 | 1.85e-32 | 109 |
| Msa0623290 | AT5G02580.1 | 56.989 | 93 | 35 | 2 | 12 | 103 | 1 | 89 | 5.00e-32 | 108 |
| Msa0623290 | AT5G02580.3 | 53.165 | 79 | 33 | 1 | 25 | 103 | 8 | 82 | 2.72e-24 | 88.6 |
| Msa0623290 | AT5G02580.2 | 75.510 | 49 | 11 | 1 | 12 | 59 | 1 | 49 | 6.13e-20 | 77.0 |
| Msa0623290 | AT1G10657.2 | 52.632 | 57 | 27 | 0 | 20 | 76 | 22 | 78 | 2.86e-19 | 76.6 |
| Msa0623290 | AT1G10657.3 | 52.632 | 57 | 27 | 0 | 20 | 76 | 22 | 78 | 3.70e-19 | 76.3 |
| Msa0623290 | AT1G10657.1 | 37.037 | 81 | 27 | 1 | 20 | 76 | 22 | 102 | 1.02e-13 | 62.8 |
| Msa0623290 | AT1G10657.4 | 37.037 | 81 | 27 | 1 | 20 | 76 | 22 | 102 | 1.35e-13 | 62.8 |
| Msa0623290 | AT5G04090.6 | 43.860 | 57 | 32 | 0 | 22 | 78 | 31 | 87 | 1.11e-11 | 60.1 |
| Msa0623290 | AT5G04090.2 | 43.860 | 57 | 32 | 0 | 22 | 78 | 14 | 70 | 1.28e-11 | 60.1 |
| Msa0623290 | AT2G46420.2 | 43.860 | 57 | 32 | 0 | 22 | 78 | 52 | 108 | 1.44e-11 | 60.1 |
| Msa0623290 | AT2G46420.3 | 43.860 | 57 | 32 | 0 | 22 | 78 | 52 | 108 | 1.57e-11 | 59.7 |
| Msa0623290 | AT2G46420.1 | 43.860 | 57 | 32 | 0 | 22 | 78 | 52 | 108 | 1.57e-11 | 59.7 |
| Msa0623290 | AT3G10250.2 | 43.860 | 57 | 32 | 0 | 22 | 78 | 14 | 70 | 1.70e-11 | 59.7 |
| Msa0623290 | AT3G10250.5 | 43.860 | 57 | 32 | 0 | 22 | 78 | 14 | 70 | 1.70e-11 | 59.7 |
| Msa0623290 | AT3G10250.1 | 43.860 | 57 | 32 | 0 | 22 | 78 | 14 | 70 | 1.70e-11 | 59.7 |
| Msa0623290 | AT3G10250.4 | 43.860 | 57 | 32 | 0 | 22 | 78 | 14 | 70 | 1.70e-11 | 59.7 |
| Msa0623290 | AT3G10250.3 | 43.860 | 57 | 32 | 0 | 22 | 78 | 14 | 70 | 2.61e-11 | 58.9 |
| Msa0623290 | AT3G61700.2 | 42.105 | 57 | 33 | 0 | 22 | 78 | 55 | 111 | 5.95e-11 | 58.2 |
| Msa0623290 | AT3G61700.1 | 42.105 | 57 | 33 | 0 | 22 | 78 | 55 | 111 | 6.15e-11 | 58.2 |
| Msa0623290 | AT3G61700.3 | 42.105 | 57 | 33 | 0 | 22 | 78 | 55 | 111 | 6.15e-11 | 58.2 |
| Msa0623290 | AT3G61700.4 | 42.105 | 57 | 33 | 0 | 22 | 78 | 53 | 109 | 6.77e-11 | 58.2 |
Find 28 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATATATATGACCAATTT+AGG | 0.171764 | 4_3:-470013 | Msa0623290:three_prime_UTR |
| TTTCAAGAGTTGATTGATTA+TGG | 0.214655 | 4_3:+470036 | None:intergenic |
| ATACCAGTGGATGTTATAAT+TGG | 0.219027 | 4_3:+471752 | None:intergenic |
| CTCTTTGGCTTCATGTTATA+TGG | 0.220781 | 4_3:+470161 | None:intergenic |
| ACATCTGAGTTGTCTCTTCC+TGG | 0.233068 | 4_3:+470117 | None:intergenic |
| TGGATTTATATTTGCATGTT+TGG | 0.252690 | 4_3:+471772 | None:intergenic |
| GTTGCTCCTCTACATTATTA+TGG | 0.253456 | 4_3:-469881 | Msa0623290:three_prime_UTR |
| CGCTTCCATGCATTCTTCCT+TGG | 0.321815 | 4_3:+471799 | None:intergenic |
| TGCATGGTAAGTACCTAAAT+TGG | 0.364202 | 4_3:+470000 | None:intergenic |
| GTCGTGTTGTGCACCTTTAG+AGG | 0.436240 | 4_3:+470067 | None:intergenic |
| AAAGAAGATGATCTCAGCTT+CGG | 0.465702 | 4_3:-470093 | Msa0623290:CDS |
| TCAGCTTCGGATTCCTCTAA+AGG | 0.506755 | 4_3:-470080 | Msa0623290:CDS |
| TTCGGCTTCATACATTCACT+TGG | 0.510731 | 4_3:-471990 | Msa0623290:intron |
| CATCTGAGTTGTCTCTTCCT+GGG | 0.513019 | 4_3:+470118 | None:intergenic |
| TGCAATACCAAGAGCTAGCA+TGG | 0.513676 | 4_3:-472026 | Msa0623290:CDS |
| TGAGTTAGAGAAGGTGAACA+AGG | 0.535925 | 4_3:-470195 | Msa0623290:CDS |
| AATCCAATTATAACATCCAC+TGG | 0.539693 | 4_3:-471755 | Msa0623290:intron |
| CATGACCAAGGAAGAATGCA+TGG | 0.570865 | 4_3:-471804 | Msa0623290:CDS |
| TGAAGAGAAAATGATGTCCC+AGG | 0.581534 | 4_3:-470135 | Msa0623290:CDS |
| GCAATACCAAGAGCTAGCAT+GGG | 0.596506 | 4_3:-472025 | Msa0623290:CDS |
| GCGCATAGACTACTAGCACT+AGG | 0.603360 | 4_3:+469925 | None:intergenic |
| ACAATACCATAATAATGTAG+AGG | 0.622036 | 4_3:+469875 | None:intergenic |
| AGTGTGGAATGAGTTAGAGA+AGG | 0.642407 | 4_3:-470204 | Msa0623290:CDS |
| GAATATTATATATACTACAA+AGG | 0.655145 | 4_3:+469819 | None:intergenic |
| TTTGATCTTTCACATGACCA+AGG | 0.655387 | 4_3:-471816 | Msa0623290:CDS |
| CAATACCAAGAGCTAGCATG+GGG | 0.665262 | 4_3:-472024 | Msa0623290:CDS |
| ATATACTACAAAGGTTGACA+AGG | 0.676891 | 4_3:+469828 | None:intergenic |
| AATACCAAGAGCTAGCATGG+GGG | 0.797315 | 4_3:-472023 | Msa0623290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAATCAAATCTT+AGG | - | chr4_3:471027-471046 | Msa0623290:intron | 10.0% |
| !! | TATAATAATATGTTTACATA+CGG | - | chr4_3:471308-471327 | Msa0623290:intron | 10.0% |
| !!! | AAAAACACAATTTTTTTTTT+CGG | + | chr4_3:471586-471605 | None:intergenic | 10.0% |
| !! | AAAACATTTCTATTTAAATA+AGG | - | chr4_3:471659-471678 | Msa0623290:intron | 10.0% |
| !! | AAACATTTCTATTTAAATAA+GGG | - | chr4_3:471660-471679 | Msa0623290:intron | 10.0% |
| !!! | ATCTACTATTTTACTAAAAA+TGG | - | chr4_3:470566-470585 | Msa0623290:intron | 15.0% |
| !!! | TCTATACTAGATTTATTTTT+AGG | - | chr4_3:471065-471084 | Msa0623290:intron | 15.0% |
| !! | ATAATAATATGTTTACATAC+GGG | - | chr4_3:471309-471328 | Msa0623290:intron | 15.0% |
| !! | ATTTGCATTTAATGTAAATT+AGG | - | chr4_3:471687-471706 | Msa0623290:intron | 15.0% |
| !! | ATTATATATATGACCAATTT+AGG | - | chr4_3:472074-472093 | Msa0623290:intron | 15.0% |
| !!! | GTTTTGATAATAATATAGTA+GGG | + | chr4_3:472143-472162 | None:intergenic | 15.0% |
| !! | GAATATTATATATACTACAA+AGG | + | chr4_3:472271-472290 | None:intergenic | 15.0% |
| !! | AAACATATTTATCAAGAACT+AGG | - | chr4_3:470009-470028 | Msa0623290:three_prime_UTR | 20.0% |
| !! | CTACAATTGCAAATATAATT+AGG | - | chr4_3:470226-470245 | Msa0623290:intron | 20.0% |
| !! | TAACAACAAATACGTAAATA+TGG | - | chr4_3:470384-470403 | Msa0623290:intron | 20.0% |
| !! | AATCAAAAGCTAGATATATA+TGG | + | chr4_3:470520-470539 | None:intergenic | 20.0% |
| !! | TGTCTAAAAAAGAAAATCAT+TGG | + | chr4_3:470702-470721 | None:intergenic | 20.0% |
| !!! | TGATTACTTATAGTTTGTTA+GGG | - | chr4_3:470730-470749 | Msa0623290:intron | 20.0% |
| !! | ATGAATGAACTATATATCAT+TGG | + | chr4_3:470832-470851 | None:intergenic | 20.0% |
| !!! | GGTTTTGATAATAATATAGT+AGG | + | chr4_3:472144-472163 | None:intergenic | 20.0% |
| ! | AAGAATGTTATAAAGTGTGA+CGG | + | chr4_3:469914-469933 | None:intergenic | 25.0% |
| ! | AGTTCCATCAAATATATACA+AGG | - | chr4_3:469980-469999 | Msa0623290:three_prime_UTR | 25.0% |
| ! | GTTCCATCAAATATATACAA+GGG | - | chr4_3:469981-470000 | Msa0623290:three_prime_UTR | 25.0% |
| !! | ATAATTTTTGTCAACATGCA+TGG | + | chr4_3:470200-470219 | None:intergenic | 25.0% |
| ! | TGGATTTATATTTGCATGTT+TGG | + | chr4_3:470318-470337 | None:intergenic | 25.0% |
| ! | TTAAAAATCATACATACCAG+TGG | + | chr4_3:470351-470370 | None:intergenic | 25.0% |
| !!! | AATCTTTAGACTATTTCTGA+AGG | - | chr4_3:470597-470616 | Msa0623290:intron | 25.0% |
| !!! | GTGATTACTTATAGTTTGTT+AGG | - | chr4_3:470729-470748 | Msa0623290:intron | 25.0% |
| !!! | GATTACTTATAGTTTGTTAG+GGG | - | chr4_3:470731-470750 | Msa0623290:intron | 25.0% |
| !!! | ATTACTTATAGTTTGTTAGG+GGG | - | chr4_3:470732-470751 | Msa0623290:intron | 25.0% |
| !! | ATATGTAAGAAGTGTATAGT+TGG | + | chr4_3:470788-470807 | None:intergenic | 25.0% |
| !!! | GTCTAACATTTTTTATAGTC+TGG | - | chr4_3:471093-471112 | Msa0623290:intron | 25.0% |
| ! | ATCATTGGTAAAAACATATG+AGG | + | chr4_3:471227-471246 | None:intergenic | 25.0% |
| ! | AACATCATGTTATAGATCAT+TGG | + | chr4_3:471242-471261 | None:intergenic | 25.0% |
| ! | ATTAAATATGTTTGTCTGCT+AGG | - | chr4_3:471444-471463 | Msa0623290:intron | 25.0% |
| !!! | GTTTTTGAGAAAACAATGAA+GGG | + | chr4_3:471539-471558 | None:intergenic | 25.0% |
| ! | TCATGAACTGAAATTACATT+GGG | - | chr4_3:471815-471834 | Msa0623290:CDS | 25.0% |
| ! | ATGAAATAATGAATGTAGTG+TGG | - | chr4_3:471867-471886 | Msa0623290:intron | 25.0% |
| !! | TTTCAAGAGTTGATTGATTA+TGG | + | chr4_3:472054-472073 | None:intergenic | 25.0% |
| ! | ACAATACCATAATAATGTAG+AGG | + | chr4_3:472215-472234 | None:intergenic | 25.0% |
| GTACAAGACAAACAAATGAA+CGG | - | chr4_3:469798-469817 | Msa0623290:three_prime_UTR | 30.0% | |
| ! | CTCTAAATCTAATCCTTTTC+TGG | - | chr4_3:469835-469854 | Msa0623290:three_prime_UTR | 30.0% |
| ! | GCTGATAAATGCTATTTGAT+TGG | + | chr4_3:469861-469880 | None:intergenic | 30.0% |
| AGAATGTTATAAAGTGTGAC+GGG | + | chr4_3:469913-469932 | None:intergenic | 30.0% | |
| TGACCCTTGTATATATTTGA+TGG | + | chr4_3:469987-470006 | None:intergenic | 30.0% | |
| AATCCAATTATAACATCCAC+TGG | - | chr4_3:470332-470351 | Msa0623290:intron | 30.0% | |
| ATACCAGTGGATGTTATAAT+TGG | + | chr4_3:470338-470357 | None:intergenic | 30.0% | |
| ! | TCTAGAGCTAACTTAATTAG+AGG | - | chr4_3:470853-470872 | Msa0623290:intron | 30.0% |
| !! | GGTTTTATAAGGTTCAAATC+AGG | - | chr4_3:470995-471014 | Msa0623290:intron | 30.0% |
| ATAGTCTGGTATGATATGTT+AGG | - | chr4_3:471107-471126 | Msa0623290:intron | 30.0% | |
| !! | GGTTTTTGAGAAAACAATGA+AGG | + | chr4_3:471540-471559 | None:intergenic | 30.0% |
| ! | CTCAAAAACCACACATTTTT+CGG | - | chr4_3:471550-471569 | Msa0623290:intron | 30.0% |
| ATGTAGACTGTTTGTTTGAA+TGG | - | chr4_3:471753-471772 | Msa0623290:intron | 30.0% | |
| CTCATGAACTGAAATTACAT+TGG | - | chr4_3:471814-471833 | Msa0623290:CDS | 30.0% | |
| ! | ATTTTCTCTTCACTACTCTT+TGG | + | chr4_3:471944-471963 | None:intergenic | 30.0% |
| !!! | GATCCTTGATCTGAATTTTT+TGG | + | chr4_3:472118-472137 | None:intergenic | 30.0% |
| ATATACTACAAAGGTTGACA+AGG | + | chr4_3:472262-472281 | None:intergenic | 30.0% | |
| GAATGTTATAAAGTGTGACG+GGG | + | chr4_3:469912-469931 | None:intergenic | 35.0% | |
| ! | AGATCAAACACTTTTCGATC+AGG | + | chr4_3:470259-470278 | None:intergenic | 35.0% |
| TTTGATCTTTCACATGACCA+AGG | - | chr4_3:470271-470290 | Msa0623290:intron | 35.0% | |
| CCAATTGGTTAACAATCAAG+TGG | + | chr4_3:470639-470658 | None:intergenic | 35.0% | |
| CCACTTGATTGTTAACCAAT+TGG | - | chr4_3:470636-470655 | Msa0623290:intron | 35.0% | |
| !! | TTGTTAACCAATTGGTGTCA+TGG | - | chr4_3:470644-470663 | Msa0623290:intron | 35.0% |
| !! | TGTTAACCAATTGGTGTCAT+GGG | - | chr4_3:470645-470664 | Msa0623290:intron | 35.0% |
| !! | GAACTATATATCATTGGCTC+TGG | + | chr4_3:470826-470845 | None:intergenic | 35.0% |
| TCTACAAATTTCAACATCGC+CGG | - | chr4_3:470897-470916 | Msa0623290:intron | 35.0% | |
| !!! | CCATATGCATGTTTTGTTTG+GGG | + | chr4_3:470930-470949 | None:intergenic | 35.0% |
| !!! | CCCATATGCATGTTTTGTTT+GGG | + | chr4_3:470931-470950 | None:intergenic | 35.0% |
| CCCAAACAAAACATGCATAT+GGG | - | chr4_3:470928-470947 | Msa0623290:intron | 35.0% | |
| !! | ACCCATATGCATGTTTTGTT+TGG | + | chr4_3:470932-470951 | None:intergenic | 35.0% |
| !! | AAAACCACACATTTTTCGGA+TGG | - | chr4_3:471554-471573 | Msa0623290:intron | 35.0% |
| TAGATCTACTCATCTAGACA+AGG | + | chr4_3:471609-471628 | None:intergenic | 35.0% | |
| TCTAGATGAGTAGATCTAGA+CGG | - | chr4_3:471611-471630 | Msa0623290:intron | 35.0% | |
| ATTAGGTCATAGATCTCTGT+CGG | - | chr4_3:471704-471723 | Msa0623290:intron | 35.0% | |
| ! | CTCTTTGGCTTCATGTTATA+TGG | + | chr4_3:471929-471948 | None:intergenic | 35.0% |
| AAAGAAGATGATCTCAGCTT+CGG | - | chr4_3:471994-472013 | Msa0623290:CDS | 35.0% | |
| TGCATGGTAAGTACCTAAAT+TGG | + | chr4_3:472090-472109 | None:intergenic | 35.0% | |
| !!! | CTTGATCTGAATTTTTTGGC+TGG | + | chr4_3:472114-472133 | None:intergenic | 35.0% |
| CAGCCAAAAAATTCAGATCA+AGG | - | chr4_3:472112-472131 | Msa0623290:intron | 35.0% | |
| GTTGCTCCTCTACATTATTA+TGG | - | chr4_3:472206-472225 | Msa0623290:intron | 35.0% | |
| ! | GCTATTTGATTGGCCAGAAA+AGG | + | chr4_3:469851-469870 | None:intergenic | 40.0% |
| AATAGCATTTATCAGCCACG+TGG | - | chr4_3:469865-469884 | Msa0623290:three_prime_UTR | 40.0% | |
| TTCGGCTTCATACATTCACT+TGG | - | chr4_3:470097-470116 | Msa0623290:CDS | 40.0% | |
| !! | TTTTGTTTGGGGAAAAGAGC+CGG | + | chr4_3:470919-470938 | None:intergenic | 40.0% |
| CCCCAAACAAAACATGCATA+TGG | - | chr4_3:470927-470946 | Msa0623290:intron | 40.0% | |
| GGTGTGTAGCATTTCAACTA+CGG | - | chr4_3:470949-470968 | Msa0623290:intron | 40.0% | |
| GTGTGTAGCATTTCAACTAC+GGG | - | chr4_3:470950-470969 | Msa0623290:intron | 40.0% | |
| TTTCAACTACGGGTAGGAAT+AGG | - | chr4_3:470960-470979 | Msa0623290:intron | 40.0% | |
| !! | TGCGCGATCTAGGTTTTATA+AGG | - | chr4_3:470984-471003 | Msa0623290:intron | 40.0% |
| TTGTCCATCCGAAAAATGTG+TGG | + | chr4_3:471561-471580 | None:intergenic | 40.0% | |
| CTAGATGAGTAGATCTAGAC+GGG | - | chr4_3:471612-471631 | Msa0623290:intron | 40.0% | |
| GTCGGTCTAACTATTCTCAT+AGG | - | chr4_3:471726-471745 | Msa0623290:intron | 40.0% | |
| AGTGTGGAATGAGTTAGAGA+AGG | - | chr4_3:471883-471902 | Msa0623290:intron | 40.0% | |
| TGAGTTAGAGAAGGTGAACA+AGG | - | chr4_3:471892-471911 | Msa0623290:intron | 40.0% | |
| TGAAGAGAAAATGATGTCCC+AGG | - | chr4_3:471952-471971 | Msa0623290:intron | 40.0% | |
| !!! | GAATTTTTTGGCTGGTTGCA+TGG | + | chr4_3:472106-472125 | None:intergenic | 40.0% |
| ! | TGTTATAAAGTGTGACGGGG+TGG | + | chr4_3:469909-469928 | None:intergenic | 45.0% |
| TGCAATACCAAGAGCTAGCA+TGG | - | chr4_3:470061-470080 | Msa0623290:CDS | 45.0% | |
| GCAATACCAAGAGCTAGCAT+GGG | - | chr4_3:470062-470081 | Msa0623290:CDS | 45.0% | |
| CAATACCAAGAGCTAGCATG+GGG | - | chr4_3:470063-470082 | Msa0623290:CDS | 45.0% | |
| AATACCAAGAGCTAGCATGG+GGG | - | chr4_3:470064-470083 | Msa0623290:CDS | 45.0% | |
| CATGACCAAGGAAGAATGCA+TGG | - | chr4_3:470283-470302 | Msa0623290:intron | 45.0% | |
| GCGTGCATGCTTAAGAAGAT+AGG | - | chr4_3:470672-470691 | Msa0623290:intron | 45.0% | |
| GTAGCATTTCAACTACGGGT+AGG | - | chr4_3:470954-470973 | Msa0623290:intron | 45.0% | |
| TGAGTAGATCTAGACGGGAT+TGG | - | chr4_3:471617-471636 | Msa0623290:intron | 45.0% | |
| CATCTGAGTTGTCTCTTCCT+GGG | + | chr4_3:471972-471991 | None:intergenic | 45.0% | |
| ACATCTGAGTTGTCTCTTCC+TGG | + | chr4_3:471973-471992 | None:intergenic | 45.0% | |
| TCAGCTTCGGATTCCTCTAA+AGG | - | chr4_3:472007-472026 | Msa0623290:CDS | 45.0% | |
| TTATCAGCCACGTGGAACAC+TGG | - | chr4_3:469873-469892 | Msa0623290:three_prime_UTR | 50.0% | |
| TATCAGCCACGTGGAACACT+GGG | - | chr4_3:469874-469893 | Msa0623290:three_prime_UTR | 50.0% | |
| ! | TAAAGTGTGACGGGGTGGTT+GGG | + | chr4_3:469904-469923 | None:intergenic | 50.0% |
| ! | ATAAAGTGTGACGGGGTGGT+TGG | + | chr4_3:469905-469924 | None:intergenic | 50.0% |
| CGCTTCCATGCATTCTTCCT+TGG | + | chr4_3:470291-470310 | None:intergenic | 50.0% | |
| GCATCTCCCATGACACCAAT+TGG | + | chr4_3:470654-470673 | None:intergenic | 50.0% | |
| GGTCATAGATCTCTGTCGGT+CGG | - | chr4_3:471708-471727 | Msa0623290:intron | 50.0% | |
| CACACACGCATGCTAGTGTT+TGG | + | chr4_3:471787-471806 | None:intergenic | 50.0% | |
| GTCGTGTTGTGCACCTTTAG+AGG | + | chr4_3:472023-472042 | None:intergenic | 50.0% | |
| GCGCATAGACTACTAGCACT+AGG | + | chr4_3:472165-472184 | None:intergenic | 50.0% | |
| CATGGGGGACTCGTCTTCTT+CGG | - | chr4_3:470079-470098 | Msa0623290:CDS | 55.0% | |
| AGGAATAGGCTGCGCGATCT+AGG | - | chr4_3:470974-470993 | Msa0623290:intron | 55.0% | |
| ! | GAGTCCCCCATGCTAGCTCT+TGG | + | chr4_3:470071-470090 | None:intergenic | 60.0% |
| ! | GTGTGACGGGGTGGTTGGGT+GGG | + | chr4_3:469900-469919 | None:intergenic | 65.0% |
| ! | AGTGTGACGGGGTGGTTGGG+TGG | + | chr4_3:469901-469920 | None:intergenic | 65.0% |
| GGTGGGCCCAGTGTTCCACG+TGG | + | chr4_3:469883-469902 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 469790 | 472319 | 469790 | ID=Msa0623290;Name=Msa0623290 |
| chr4_3 | mRNA | 469790 | 472319 | 469790 | ID=Msa0623290-mRNA-1;Parent=Msa0623290;Name=Msa0623290-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.66|0.5|0.75|0|0.25|4|271|113 |
| chr4_3 | exon | 469790 | 470224 | 469790 | ID=Msa0623290-mRNA-1:exon:144;Parent=Msa0623290-mRNA-1 |
| chr4_3 | exon | 471756 | 471861 | 471756 | ID=Msa0623290-mRNA-1:exon:143;Parent=Msa0623290-mRNA-1 |
| chr4_3 | exon | 471991 | 472054 | 471991 | ID=Msa0623290-mRNA-1:exon:142;Parent=Msa0623290-mRNA-1 |
| chr4_3 | exon | 472312 | 472319 | 472312 | ID=Msa0623290-mRNA-1:exon:141;Parent=Msa0623290-mRNA-1 |
| chr4_3 | CDS | 472312 | 472319 | 472312 | ID=Msa0623290-mRNA-1:cds;Parent=Msa0623290-mRNA-1 |
| chr4_3 | CDS | 471991 | 472054 | 471991 | ID=Msa0623290-mRNA-1:cds;Parent=Msa0623290-mRNA-1 |
| chr4_3 | CDS | 471756 | 471861 | 471756 | ID=Msa0623290-mRNA-1:cds;Parent=Msa0623290-mRNA-1 |
| chr4_3 | CDS | 470061 | 470224 | 470061 | ID=Msa0623290-mRNA-1:cds;Parent=Msa0623290-mRNA-1 |
| chr4_3 | three_prime_UTR | 469790 | 470060 | 469790 | ID=Msa0623290-mRNA-1:three_prime_utr;Parent=Msa0623290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
