AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1081600


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081600 MtrunA17_Chr7g0268711 99.020 102 1 0 22 123 1 102 7.44e-73 212
Msa1081600 MtrunA17_Chr1g0195981 78.571 98 21 0 22 119 1 98 1.73e-57 173
Msa1081600 MtrunA17_Chr1g0195991 76.531 98 23 0 22 119 1 98 2.56e-57 172
Msa1081600 MtrunA17_Chr1g0195971 57.447 94 40 0 22 115 1 94 2.46e-37 122
Msa1081600 MtrunA17_Chr2g0286251 55.789 95 42 0 22 116 1 95 3.90e-37 122
Msa1081600 MtrunA17_Chr2g0286271 55.789 95 42 0 22 116 1 95 8.12e-37 120
Msa1081600 MtrunA17_Chr7g0268731 53.684 95 43 1 22 115 1 95 1.47e-32 110
Msa1081600 MtrunA17_Chr7g0224091 50.000 96 47 1 22 116 22 117 2.95e-32 110
Msa1081600 MtrunA17_Chr7g0222541 46.392 97 51 1 21 116 29 125 2.95e-32 110
Msa1081600 MtrunA17_Chr7g0222551 46.392 97 51 1 21 116 29 125 8.69e-32 109
Msa1081600 MtrunA17_Chr7g0268721 52.632 95 44 1 22 115 1 95 1.03e-31 108
Msa1081600 MtrunA17_Chr4g0066791 50.000 96 47 1 22 116 1 96 3.31e-31 107
Msa1081600 MtrunA17_Chr4g0066801 50.000 96 47 1 22 116 1 96 3.31e-31 107
Msa1081600 MtrunA17_Chr4g0066811 50.000 96 47 1 22 116 1 96 3.31e-31 107
Msa1081600 MtrunA17_Chr7g0222491 45.361 97 52 1 21 116 29 125 4.61e-31 107
Msa1081600 MtrunA17_Chr7g0268751 45.263 95 52 0 22 116 1 95 7.64e-26 93.2
Msa1081600 MtrunA17_Chr1g0195951 42.553 94 54 0 22 115 1 94 3.17e-24 89.4
Msa1081600 MtrunA17_Chr1g0195931 44.681 94 52 0 22 115 1 94 7.98e-22 83.2
Msa1081600 MtrunA17_Chr7g0268761 42.553 94 54 0 22 115 1 94 3.77e-21 81.3
Msa1081600 MtrunA17_Chr2g0282951 38.053 113 67 1 7 116 8 120 3.19e-19 77.0
Msa1081600 MtrunA17_Chr2g0303741 38.776 98 56 1 23 116 40 137 2.01e-17 72.8
Msa1081600 MtrunA17_Chr2g0325001 34.375 96 56 2 25 116 41 133 2.52e-16 70.1
Msa1081600 MtrunA17_Chr1g0182971 39.080 87 52 1 30 115 91 177 1.18e-15 69.3
Msa1081600 MtrunA17_Chr4g0040601 33.628 113 70 3 7 116 38 148 3.24e-15 67.4
Msa1081600 MtrunA17_Chr3g0117411 32.979 94 63 0 22 115 18 111 2.97e-13 61.6
Msa1081600 MtrunA17_Chr7g0228311 33.333 96 64 0 20 115 1 96 6.24e-13 60.5
Msa1081600 MtrunA17_Chr3g0117391 32.979 94 63 0 22 115 21 114 3.20e-12 58.9
Msa1081600 MtrunA17_Chr1g0151231 34.737 95 52 2 24 112 48 138 4.29e-12 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1081600 AT2G47880.1 75.758 99 24 0 22 120 1 99 1.46e-54 166
Msa1081600 AT2G30540.1 71.000 100 29 0 22 121 1 100 3.64e-54 165
Msa1081600 AT1G06830.1 74.227 97 25 0 22 118 1 97 1.92e-53 163
Msa1081600 AT3G62960.1 71.569 102 29 0 22 123 1 102 4.63e-53 162
Msa1081600 AT3G62950.1 53.000 100 46 1 22 120 1 100 1.51e-37 123
Msa1081600 AT2G47870.1 53.125 96 44 1 22 116 1 96 5.40e-36 119
Msa1081600 AT3G21460.1 54.737 95 43 0 22 116 1 95 3.84e-35 117
Msa1081600 AT4G15680.1 49.474 95 48 0 22 116 1 95 2.06e-32 110
Msa1081600 AT5G18600.1 50.526 95 47 0 22 116 1 95 2.93e-32 109
Msa1081600 AT4G15670.1 48.421 95 49 0 22 116 1 95 1.03e-31 108
Msa1081600 AT4G15660.1 47.423 97 51 0 22 118 1 97 1.78e-31 107
Msa1081600 AT4G15700.1 48.421 95 49 0 22 116 1 95 2.21e-31 107
Msa1081600 AT4G15690.1 48.421 95 49 0 22 116 1 95 4.21e-31 107
Msa1081600 AT5G14070.1 43.689 103 50 2 22 116 31 133 5.30e-26 95.1
Msa1081600 AT3G62930.1 42.105 95 55 0 22 116 1 95 3.94e-25 91.7
Msa1081600 AT3G02000.1 43.434 99 50 1 24 116 31 129 2.32e-23 88.2
Msa1081600 AT1G03020.1 42.105 95 55 0 22 116 1 95 2.95e-23 87.0
Msa1081600 AT1G28480.1 33.673 98 61 2 23 116 33 130 6.92e-15 66.6
Msa1081600 AT4G33040.1 39.785 93 50 2 24 111 41 132 1.09e-14 66.2
Msa1081600 AT4G28730.1 35.556 90 57 1 23 111 71 160 3.94e-14 65.5
Msa1081600 AT5G40370.1 31.250 96 66 0 20 115 1 96 2.00e-12 59.7
Msa1081600 AT5G20500.1 33.333 93 62 0 23 115 33 125 1.14e-11 58.2
Msa1081600 AT2G20270.1 33.333 87 57 1 30 115 83 169 2.11e-11 58.5
Msa1081600 AT4G28730.2 38.571 70 42 1 23 91 71 140 3.53e-11 57.0

Find 41 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCATTTCCCTTCCTTC+AGG 0.237314 7_2:+81435400 None:intergenic
CCTGTTCCTGCTGTGTTCAT+TGG 0.272350 7_2:-81435349 Msa1081600:CDS
TGTTTCAAGAACTTGGGATT+AGG 0.357723 7_2:-81435450 Msa1081600:CDS
TCTCCATTTCCCTTCCTTCA+GGG 0.366539 7_2:+81435401 None:intergenic
AACATTCTGTTTCAAGAACT+TGG 0.368312 7_2:-81435457 Msa1081600:CDS
GTGAAGGGACATAATTTCAT+TGG 0.393227 7_2:+81435306 None:intergenic
AGACCCTGAAGGAAGGGAAA+TGG 0.401791 7_2:-81435404 Msa1081600:CDS
GTCAATTAATACCTGGTTCT+CGG 0.407494 7_2:+81436106 None:intergenic
GAATCATGATACCTTGTTGC+TGG 0.424030 7_2:-81435231 Msa1081600:three_prime_UTR
TTGAGGTTGGCATCTGAAAA+AGG 0.425553 7_2:-81435526 Msa1081600:CDS
TGATTCAATTAGAACGAGAT+TGG 0.435807 7_2:+81435248 None:intergenic
AGAACTTGGGATTAGGCCTA+TGG 0.436071 7_2:-81435443 Msa1081600:CDS
GTTCCTGCTGTGTTCATTGG+AGG 0.437740 7_2:-81435346 Msa1081600:CDS
GAGAAAGCTTTGTTGAGGTT+AGG 0.441107 7_2:-81435382 Msa1081600:CDS
TTCATTGGAGGGCAACTGAT+GGG 0.446550 7_2:-81435334 Msa1081600:CDS
CCAATGAACACAGCAGGAAC+AGG 0.496655 7_2:+81435349 None:intergenic
TTGTTGCTGGAAGAATAAAC+TGG 0.496668 7_2:-81435218 Msa1081600:three_prime_UTR
GTTCATTGGAGGGCAACTGA+TGG 0.499451 7_2:-81435335 Msa1081600:CDS
TCAATTAATACCTGGTTCTC+GGG 0.503136 7_2:+81436107 None:intergenic
ATTGAGTGAGGGAGCCACTT+AGG 0.507881 7_2:+81435284 None:intergenic
CAATTAGAACGAGATTGGTA+TGG 0.511391 7_2:+81435253 None:intergenic
AGCAGCTGATCCCGAGAACC+AGG 0.515920 7_2:-81436117 None:intergenic
TGATCAATTTCATGAACCAT+AGG 0.516130 7_2:+81435427 None:intergenic
TTCCTGCTGTGTTCATTGGA+GGG 0.520038 7_2:-81435345 Msa1081600:CDS
TAACAGTATCATCATCAAGA+TGG 0.522532 7_2:-81435557 Msa1081600:CDS
ACATTCTGTTTCAAGAACTT+GGG 0.523434 7_2:-81435456 Msa1081600:CDS
TGCCCTCCAATGAACACAGC+AGG 0.533916 7_2:+81435343 None:intergenic
TTGATCAAGACCCTGAAGGA+AGG 0.541164 7_2:-81435411 Msa1081600:CDS
AAGGGACATAATTTCATTGG+TGG 0.541849 7_2:+81435309 None:intergenic
ATTATGTCCCTTCACCTAAG+TGG 0.557113 7_2:-81435298 Msa1081600:CDS
TGATCAAGACCCTGAAGGAA+GGG 0.574619 7_2:-81435410 Msa1081600:CDS
TCATTGGAGGGCAACTGATG+GGG 0.576911 7_2:-81435333 Msa1081600:CDS
AGTTTATTCTTCCAGCAACA+AGG 0.579317 7_2:+81435220 None:intergenic
TGAGGGAGCCACTTAGGTGA+AGG 0.580811 7_2:+81435290 None:intergenic
AAATGGAGAAAGCTTTGTTG+AGG 0.591044 7_2:-81435387 Msa1081600:CDS
GATGGACAAAGTGTTGAGGT+TGG 0.596621 7_2:-81435539 Msa1081600:CDS
GAGGGAGCCACTTAGGTGAA+GGG 0.625802 7_2:+81435291 None:intergenic
TCAAGATGGACAAAGTGTTG+AGG 0.649690 7_2:-81435543 Msa1081600:CDS
TGGCTTGATCAATTGAGTGA+GGG 0.652206 7_2:+81435273 None:intergenic
GAAATTGATCAAGACCCTGA+AGG 0.656540 7_2:-81435415 Msa1081600:CDS
ATGGCTTGATCAATTGAGTG+AGG 0.695900 7_2:+81435272 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATAGAAAATTATATATGA+TGG + chr7_2:81435399-81435418 None:intergenic 15.0%
!! AGATAGAAAATTATATATGA+TGG + chr7_2:81435399-81435418 None:intergenic 15.0%
!!! AATTTTCTTAATGTTGAAAG+TGG + chr7_2:81435100-81435119 None:intergenic 20.0%
!! AAAATTATATATGATGGTTG+AGG + chr7_2:81435393-81435412 None:intergenic 20.0%
!! ATTTGTTTAGATTATTACCT+TGG + chr7_2:81435505-81435524 None:intergenic 20.0%
!!! AATTTTCTTAATGTTGAAAG+TGG + chr7_2:81435100-81435119 None:intergenic 20.0%
!! AAAATTATATATGATGGTTG+AGG + chr7_2:81435393-81435412 None:intergenic 20.0%
!! ATTTGTTTAGATTATTACCT+TGG + chr7_2:81435505-81435524 None:intergenic 20.0%
! ATGTTCTACACAAATAGTTA+TGG - chr7_2:81435177-81435196 Msa1081600:three_prime_UTR 25.0%
! TTTATTCGATATAGCAAGTT+GGG + chr7_2:81435265-81435284 None:intergenic 25.0%
!! TTTTATTCGATATAGCAAGT+TGG + chr7_2:81435266-81435285 None:intergenic 25.0%
! GTATTTATAGGAACTAACTT+GGG + chr7_2:81435339-81435358 None:intergenic 25.0%
! AGTATTTATAGGAACTAACT+TGG + chr7_2:81435340-81435359 None:intergenic 25.0%
!!! TGGTAAATGAGAGTATTTAT+AGG + chr7_2:81435351-81435370 None:intergenic 25.0%
!!! GTTATTTTGAAATGAAATGG+TGG + chr7_2:81435371-81435390 None:intergenic 25.0%
!!! GAGGTTATTTTGAAATGAAA+TGG + chr7_2:81435374-81435393 None:intergenic 25.0%
! ATGTTCTACACAAATAGTTA+TGG - chr7_2:81435177-81435196 Msa1081600:three_prime_UTR 25.0%
! TTTATTCGATATAGCAAGTT+GGG + chr7_2:81435265-81435284 None:intergenic 25.0%
!! TTTTATTCGATATAGCAAGT+TGG + chr7_2:81435266-81435285 None:intergenic 25.0%
! GTATTTATAGGAACTAACTT+GGG + chr7_2:81435339-81435358 None:intergenic 25.0%
! AGTATTTATAGGAACTAACT+TGG + chr7_2:81435340-81435359 None:intergenic 25.0%
!!! TGGTAAATGAGAGTATTTAT+AGG + chr7_2:81435351-81435370 None:intergenic 25.0%
!!! GTTATTTTGAAATGAAATGG+TGG + chr7_2:81435371-81435390 None:intergenic 25.0%
!!! GAGGTTATTTTGAAATGAAA+TGG + chr7_2:81435374-81435393 None:intergenic 25.0%
! ACACAAATAGTTATGGACTA+TGG - chr7_2:81435184-81435203 Msa1081600:three_prime_UTR 30.0%
AACTATAGTAGACTTAGACT+AGG + chr7_2:81435217-81435236 None:intergenic 30.0%
TAACAGTATCATCATCAAGA+TGG - chr7_2:81435624-81435643 Msa1081600:intron 30.0%
AACATTCTGTTTCAAGAACT+TGG - chr7_2:81435724-81435743 Msa1081600:intron 30.0%
ACATTCTGTTTCAAGAACTT+GGG - chr7_2:81435725-81435744 Msa1081600:intron 30.0%
TGATCAATTTCATGAACCAT+AGG + chr7_2:81435757-81435776 None:intergenic 30.0%
TGATTCAATTAGAACGAGAT+TGG + chr7_2:81435936-81435955 None:intergenic 30.0%
! ACACAAATAGTTATGGACTA+TGG - chr7_2:81435184-81435203 Msa1081600:three_prime_UTR 30.0%
AACTATAGTAGACTTAGACT+AGG + chr7_2:81435217-81435236 None:intergenic 30.0%
TAACAGTATCATCATCAAGA+TGG - chr7_2:81435624-81435643 Msa1081600:intron 30.0%
AACATTCTGTTTCAAGAACT+TGG - chr7_2:81435724-81435743 Msa1081600:intron 30.0%
ACATTCTGTTTCAAGAACTT+GGG - chr7_2:81435725-81435744 Msa1081600:intron 30.0%
TGATCAATTTCATGAACCAT+AGG + chr7_2:81435757-81435776 None:intergenic 30.0%
TGATTCAATTAGAACGAGAT+TGG + chr7_2:81435936-81435955 None:intergenic 30.0%
! TCAATTAATACCTGGTTCTC+GGG + chr7_2:81435077-81435096 None:intergenic 35.0%
! GTCAATTAATACCTGGTTCT+CGG + chr7_2:81435078-81435097 None:intergenic 35.0%
GAAAGTGGTCAATTAATACC+TGG + chr7_2:81435085-81435104 None:intergenic 35.0%
AAGTTGGGAGACATATTTAC+AGG + chr7_2:81435250-81435269 None:intergenic 35.0%
TTCGATCTGATGGTTGTATT+GGG + chr7_2:81435438-81435457 None:intergenic 35.0%
ATTCGATCTGATGGTTGTAT+TGG + chr7_2:81435439-81435458 None:intergenic 35.0%
! AATTCAGTTTCGATTCGATC+TGG - chr7_2:81435456-81435475 Msa1081600:CDS 35.0%
TGTTTCAAGAACTTGGGATT+AGG - chr7_2:81435731-81435750 Msa1081600:intron 35.0%
!! AAATGGAGAAAGCTTTGTTG+AGG - chr7_2:81435794-81435813 Msa1081600:intron 35.0%
AAGGGACATAATTTCATTGG+TGG + chr7_2:81435875-81435894 None:intergenic 35.0%
GTGAAGGGACATAATTTCAT+TGG + chr7_2:81435878-81435897 None:intergenic 35.0%
CAATTAGAACGAGATTGGTA+TGG + chr7_2:81435931-81435950 None:intergenic 35.0%
AGTTTATTCTTCCAGCAACA+AGG + chr7_2:81435964-81435983 None:intergenic 35.0%
TTGTTGCTGGAAGAATAAAC+TGG - chr7_2:81435963-81435982 Msa1081600:intron 35.0%
! TCAATTAATACCTGGTTCTC+GGG + chr7_2:81435077-81435096 None:intergenic 35.0%
! GTCAATTAATACCTGGTTCT+CGG + chr7_2:81435078-81435097 None:intergenic 35.0%
GAAAGTGGTCAATTAATACC+TGG + chr7_2:81435085-81435104 None:intergenic 35.0%
AAGTTGGGAGACATATTTAC+AGG + chr7_2:81435250-81435269 None:intergenic 35.0%
TTCGATCTGATGGTTGTATT+GGG + chr7_2:81435438-81435457 None:intergenic 35.0%
ATTCGATCTGATGGTTGTAT+TGG + chr7_2:81435439-81435458 None:intergenic 35.0%
! AATTCAGTTTCGATTCGATC+TGG - chr7_2:81435456-81435475 Msa1081600:CDS 35.0%
TGTTTCAAGAACTTGGGATT+AGG - chr7_2:81435731-81435750 Msa1081600:intron 35.0%
!! AAATGGAGAAAGCTTTGTTG+AGG - chr7_2:81435794-81435813 Msa1081600:intron 35.0%
AAGGGACATAATTTCATTGG+TGG + chr7_2:81435875-81435894 None:intergenic 35.0%
GTGAAGGGACATAATTTCAT+TGG + chr7_2:81435878-81435897 None:intergenic 35.0%
CAATTAGAACGAGATTGGTA+TGG + chr7_2:81435931-81435950 None:intergenic 35.0%
AGTTTATTCTTCCAGCAACA+AGG + chr7_2:81435964-81435983 None:intergenic 35.0%
TTGTTGCTGGAAGAATAAAC+TGG - chr7_2:81435963-81435982 Msa1081600:intron 35.0%
! TTGGGAAGCACATTGAAAAG+AGG + chr7_2:81435321-81435340 None:intergenic 40.0%
TCTGATGGTTGTATTGGGTT+TGG + chr7_2:81435433-81435452 None:intergenic 40.0%
CGAAACTGAATTCGATCTGA+TGG + chr7_2:81435448-81435467 None:intergenic 40.0%
!! TCAAGATGGACAAAGTGTTG+AGG - chr7_2:81435638-81435657 Msa1081600:intron 40.0%
TTGAGGTTGGCATCTGAAAA+AGG - chr7_2:81435655-81435674 Msa1081600:intron 40.0%
GAAATTGATCAAGACCCTGA+AGG - chr7_2:81435766-81435785 Msa1081600:intron 40.0%
!! GAGAAAGCTTTGTTGAGGTT+AGG - chr7_2:81435799-81435818 Msa1081600:intron 40.0%
ATTATGTCCCTTCACCTAAG+TGG - chr7_2:81435883-81435902 Msa1081600:intron 40.0%
TGGCTTGATCAATTGAGTGA+GGG + chr7_2:81435911-81435930 None:intergenic 40.0%
ATGGCTTGATCAATTGAGTG+AGG + chr7_2:81435912-81435931 None:intergenic 40.0%
GAATCATGATACCTTGTTGC+TGG - chr7_2:81435950-81435969 Msa1081600:intron 40.0%
! TTGGGAAGCACATTGAAAAG+AGG + chr7_2:81435321-81435340 None:intergenic 40.0%
TCTGATGGTTGTATTGGGTT+TGG + chr7_2:81435433-81435452 None:intergenic 40.0%
CGAAACTGAATTCGATCTGA+TGG + chr7_2:81435448-81435467 None:intergenic 40.0%
!! TCAAGATGGACAAAGTGTTG+AGG - chr7_2:81435638-81435657 Msa1081600:intron 40.0%
TTGAGGTTGGCATCTGAAAA+AGG - chr7_2:81435655-81435674 Msa1081600:intron 40.0%
GAAATTGATCAAGACCCTGA+AGG - chr7_2:81435766-81435785 Msa1081600:intron 40.0%
!! GAGAAAGCTTTGTTGAGGTT+AGG - chr7_2:81435799-81435818 Msa1081600:intron 40.0%
ATTATGTCCCTTCACCTAAG+TGG - chr7_2:81435883-81435902 Msa1081600:intron 40.0%
TGGCTTGATCAATTGAGTGA+GGG + chr7_2:81435911-81435930 None:intergenic 40.0%
ATGGCTTGATCAATTGAGTG+AGG + chr7_2:81435912-81435931 None:intergenic 40.0%
GAATCATGATACCTTGTTGC+TGG - chr7_2:81435950-81435969 Msa1081600:intron 40.0%
! TCAGTTTCGATTCGATCTGG+TGG - chr7_2:81435459-81435478 Msa1081600:CDS 45.0%
! TTCGATTCGATCTGGTGGTT+TGG - chr7_2:81435464-81435483 Msa1081600:CDS 45.0%
! TCGATTCGATCTGGTGGTTT+GGG - chr7_2:81435465-81435484 Msa1081600:CDS 45.0%
GGGCGGTCTAAATAAATCCA+AGG - chr7_2:81435485-81435504 Msa1081600:CDS 45.0%
!! GATGGACAAAGTGTTGAGGT+TGG - chr7_2:81435642-81435661 Msa1081600:intron 45.0%
GTTGGCATCTGAAAAAGGTG+TGG - chr7_2:81435660-81435679 Msa1081600:intron 45.0%
AGAACTTGGGATTAGGCCTA+TGG - chr7_2:81435738-81435757 Msa1081600:intron 45.0%
TTGATCAAGACCCTGAAGGA+AGG - chr7_2:81435770-81435789 Msa1081600:intron 45.0%
TGATCAAGACCCTGAAGGAA+GGG - chr7_2:81435771-81435790 Msa1081600:intron 45.0%
TCTCCATTTCCCTTCCTTCA+GGG + chr7_2:81435783-81435802 None:intergenic 45.0%
TTCTCCATTTCCCTTCCTTC+AGG + chr7_2:81435784-81435803 None:intergenic 45.0%
TTCCTGCTGTGTTCATTGGA+GGG - chr7_2:81435836-81435855 Msa1081600:intron 45.0%
TTCATTGGAGGGCAACTGAT+GGG - chr7_2:81435847-81435866 Msa1081600:intron 45.0%
! TCAGTTTCGATTCGATCTGG+TGG - chr7_2:81435459-81435478 Msa1081600:CDS 45.0%
! TTCGATTCGATCTGGTGGTT+TGG - chr7_2:81435464-81435483 Msa1081600:CDS 45.0%
! TCGATTCGATCTGGTGGTTT+GGG - chr7_2:81435465-81435484 Msa1081600:CDS 45.0%
GGGCGGTCTAAATAAATCCA+AGG - chr7_2:81435485-81435504 Msa1081600:CDS 45.0%
!! GATGGACAAAGTGTTGAGGT+TGG - chr7_2:81435642-81435661 Msa1081600:intron 45.0%
GTTGGCATCTGAAAAAGGTG+TGG - chr7_2:81435660-81435679 Msa1081600:intron 45.0%
AGAACTTGGGATTAGGCCTA+TGG - chr7_2:81435738-81435757 Msa1081600:intron 45.0%
TTGATCAAGACCCTGAAGGA+AGG - chr7_2:81435770-81435789 Msa1081600:intron 45.0%
TGATCAAGACCCTGAAGGAA+GGG - chr7_2:81435771-81435790 Msa1081600:intron 45.0%
TCTCCATTTCCCTTCCTTCA+GGG + chr7_2:81435783-81435802 None:intergenic 45.0%
TTCTCCATTTCCCTTCCTTC+AGG + chr7_2:81435784-81435803 None:intergenic 45.0%
TTCCTGCTGTGTTCATTGGA+GGG - chr7_2:81435836-81435855 Msa1081600:intron 45.0%
TTCATTGGAGGGCAACTGAT+GGG - chr7_2:81435847-81435866 Msa1081600:intron 45.0%
! ATTCGATCTGGTGGTTTGGG+CGG - chr7_2:81435468-81435487 Msa1081600:CDS 50.0%
AGACCCTGAAGGAAGGGAAA+TGG - chr7_2:81435777-81435796 Msa1081600:intron 50.0%
CCAATGAACACAGCAGGAAC+AGG + chr7_2:81435835-81435854 None:intergenic 50.0%
CCTGTTCCTGCTGTGTTCAT+TGG - chr7_2:81435832-81435851 Msa1081600:intron 50.0%
GTTCCTGCTGTGTTCATTGG+AGG - chr7_2:81435835-81435854 Msa1081600:intron 50.0%
GTTCATTGGAGGGCAACTGA+TGG - chr7_2:81435846-81435865 Msa1081600:intron 50.0%
TCATTGGAGGGCAACTGATG+GGG - chr7_2:81435848-81435867 Msa1081600:intron 50.0%
ATTGAGTGAGGGAGCCACTT+AGG + chr7_2:81435900-81435919 None:intergenic 50.0%
! ATTCGATCTGGTGGTTTGGG+CGG - chr7_2:81435468-81435487 Msa1081600:CDS 50.0%
AGACCCTGAAGGAAGGGAAA+TGG - chr7_2:81435777-81435796 Msa1081600:intron 50.0%
CCAATGAACACAGCAGGAAC+AGG + chr7_2:81435835-81435854 None:intergenic 50.0%
CCTGTTCCTGCTGTGTTCAT+TGG - chr7_2:81435832-81435851 Msa1081600:intron 50.0%
GTTCCTGCTGTGTTCATTGG+AGG - chr7_2:81435835-81435854 Msa1081600:intron 50.0%
GTTCATTGGAGGGCAACTGA+TGG - chr7_2:81435846-81435865 Msa1081600:intron 50.0%
TCATTGGAGGGCAACTGATG+GGG - chr7_2:81435848-81435867 Msa1081600:intron 50.0%
ATTGAGTGAGGGAGCCACTT+AGG + chr7_2:81435900-81435919 None:intergenic 50.0%
TGCCCTCCAATGAACACAGC+AGG + chr7_2:81435841-81435860 None:intergenic 55.0%
GAGGGAGCCACTTAGGTGAA+GGG + chr7_2:81435893-81435912 None:intergenic 55.0%
TGAGGGAGCCACTTAGGTGA+AGG + chr7_2:81435894-81435913 None:intergenic 55.0%
TGCCCTCCAATGAACACAGC+AGG + chr7_2:81435841-81435860 None:intergenic 55.0%
GAGGGAGCCACTTAGGTGAA+GGG + chr7_2:81435893-81435912 None:intergenic 55.0%
TGAGGGAGCCACTTAGGTGA+AGG + chr7_2:81435894-81435913 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 81435069 81436134 81435069 ID=Msa1081600;Name=Msa1081600
chr7_2 mRNA 81435069 81436134 81435069 ID=Msa1081600-mRNA-1;Parent=Msa1081600;Name=Msa1081600-mRNA-1;_AED=0.26;_eAED=0.28;_QI=0|0|0.5|1|0|0|2|183|123
chr7_2 exon 81435069 81435606 81435069 ID=Msa1081600-mRNA-1:exon:20873;Parent=Msa1081600-mRNA-1
chr7_2 exon 81436118 81436134 81436118 ID=Msa1081600-mRNA-1:exon:20872;Parent=Msa1081600-mRNA-1
chr7_2 CDS 81436118 81436134 81436118 ID=Msa1081600-mRNA-1:cds;Parent=Msa1081600-mRNA-1
chr7_2 CDS 81435252 81435606 81435252 ID=Msa1081600-mRNA-1:cds;Parent=Msa1081600-mRNA-1
chr7_2 three_prime_UTR 81435069 81435251 81435069 ID=Msa1081600-mRNA-1:three_prime_utr;Parent=Msa1081600-mRNA-1
Gene Sequence

>Msa1081600

CTGATCCCGAGAACCAGAAGAACAACTACAAGAACTAGAACTTTTAACAGTATCATCATCAAGATGGACAAAGTGTTGAGGTTGGCATCTGAAAAAGGTGTGGTGATTTTCACAAAGAGTTCATGTTGTCTATGCTATGCAGTTAACATTCTGTTTCAAGAACTTGGGATTAGGCCTATGGTTCATGAAATTGATCAAGACCCTGAAGGAAGGGAAATGGAGAAAGCTTTGTTGAGGTTAGGTTGTACTGCACCTGTTCCTGCTGTGTTCATTGGAGGGCAACTGATGGGGTCCACCAATGAAATTATGTCCCTTCACCTAAGTGGCTCCCTCACTCAATTGATCAAGCCATACCAATCTCGTTCTAATTGA

Protein sequence

>Msa1081600

LIPRTRRTTTRTRTFNSIIIKMDKVLRLASEKGVVIFTKSSCCLCYAVNILFQELGIRPMVHEIDQDPEGREMEKALLRLGCTAPVPAVFIGGQLMGSTNEIMSLHLSGSLTQLIKPYQSRSN*