AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1166370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166370 MtrunA17_Chr7g0268711 99.020 102 1 0 18 119 1 102 4.80e-73 212
Msa1166370 MtrunA17_Chr1g0195981 78.571 98 21 0 18 115 1 98 9.69e-58 173
Msa1166370 MtrunA17_Chr1g0195991 76.531 98 23 0 18 115 1 98 1.77e-57 172
Msa1166370 MtrunA17_Chr1g0195971 57.447 94 40 0 18 111 1 94 1.96e-37 122
Msa1166370 MtrunA17_Chr2g0286251 55.789 95 42 0 18 112 1 95 2.70e-37 122
Msa1166370 MtrunA17_Chr2g0286271 55.789 95 42 0 18 112 1 95 7.88e-37 120
Msa1166370 MtrunA17_Chr7g0268731 53.684 95 43 1 18 111 1 95 1.53e-32 110
Msa1166370 MtrunA17_Chr7g0224091 50.000 96 47 1 18 112 22 117 2.05e-32 110
Msa1166370 MtrunA17_Chr7g0222541 46.392 97 51 1 17 112 29 125 2.63e-32 110
Msa1166370 MtrunA17_Chr7g0222551 46.392 97 51 1 17 112 29 125 7.58e-32 109
Msa1166370 MtrunA17_Chr7g0268721 52.632 95 44 1 18 111 1 95 1.05e-31 108
Msa1166370 MtrunA17_Chr4g0066791 50.000 96 47 1 18 112 1 96 2.02e-31 107
Msa1166370 MtrunA17_Chr4g0066801 50.000 96 47 1 18 112 1 96 2.02e-31 107
Msa1166370 MtrunA17_Chr4g0066811 50.000 96 47 1 18 112 1 96 2.02e-31 107
Msa1166370 MtrunA17_Chr7g0222491 43.925 107 57 2 7 112 21 125 3.98e-31 107
Msa1166370 MtrunA17_Chr7g0268751 45.263 95 52 0 18 112 1 95 6.01e-26 93.2
Msa1166370 MtrunA17_Chr1g0195951 42.553 94 54 0 18 111 1 94 2.05e-24 89.4
Msa1166370 MtrunA17_Chr1g0195931 44.681 94 52 0 18 111 1 94 8.28e-22 83.2
Msa1166370 MtrunA17_Chr7g0268761 42.553 94 54 0 18 111 1 94 2.27e-21 81.6
Msa1166370 MtrunA17_Chr2g0282951 38.053 113 67 1 3 112 8 120 2.40e-19 77.4
Msa1166370 MtrunA17_Chr2g0303741 38.776 98 56 1 19 112 40 137 1.70e-17 73.2
Msa1166370 MtrunA17_Chr2g0325001 34.375 96 56 2 21 112 41 133 1.60e-16 70.5
Msa1166370 MtrunA17_Chr1g0182971 39.080 87 52 1 26 111 91 177 9.76e-16 69.3
Msa1166370 MtrunA17_Chr4g0040601 33.043 115 72 3 1 112 36 148 2.43e-15 67.8
Msa1166370 MtrunA17_Chr3g0117411 32.979 94 63 0 18 111 18 111 2.41e-13 61.6
Msa1166370 MtrunA17_Chr7g0228311 33.333 96 64 0 16 111 1 96 5.53e-13 60.5
Msa1166370 MtrunA17_Chr3g0117391 32.979 94 63 0 18 111 21 114 2.25e-12 59.3
Msa1166370 MtrunA17_Chr1g0151231 34.737 95 52 2 20 108 48 138 3.39e-12 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166370 AT2G47880.1 75.758 99 24 0 18 116 1 99 1.00e-54 166
Msa1166370 AT2G30540.1 71.000 100 29 0 18 117 1 100 3.35e-54 165
Msa1166370 AT1G06830.1 74.227 97 25 0 18 114 1 97 1.60e-53 163
Msa1166370 AT3G62960.1 71.569 102 29 0 18 119 1 102 3.46e-53 162
Msa1166370 AT3G62950.1 53.000 100 46 1 18 116 1 100 1.30e-37 123
Msa1166370 AT2G47870.1 53.125 96 44 1 18 112 1 96 4.16e-36 119
Msa1166370 AT3G21460.1 54.737 95 43 0 18 112 1 95 3.23e-35 117
Msa1166370 AT4G15680.1 49.474 95 48 0 18 112 1 95 1.76e-32 110
Msa1166370 AT5G18600.1 50.526 95 47 0 18 112 1 95 2.52e-32 109
Msa1166370 AT4G15670.1 48.421 95 49 0 18 112 1 95 7.53e-32 108
Msa1166370 AT4G15660.1 47.423 97 51 0 18 114 1 97 1.67e-31 107
Msa1166370 AT4G15700.1 48.421 95 49 0 18 112 1 95 2.13e-31 107
Msa1166370 AT4G15690.1 48.421 95 49 0 18 112 1 95 4.10e-31 106
Msa1166370 AT5G14070.1 43.689 103 50 2 18 112 31 133 3.18e-26 95.5
Msa1166370 AT3G62930.1 42.105 95 55 0 18 112 1 95 3.99e-25 91.7
Msa1166370 AT3G02000.1 43.434 99 50 1 20 112 31 129 1.81e-23 88.6
Msa1166370 AT1G03020.1 42.105 95 55 0 18 112 1 95 2.32e-23 87.0
Msa1166370 AT1G28480.1 33.673 98 61 2 19 112 33 130 4.23e-15 67.0
Msa1166370 AT4G33040.1 39.785 93 50 2 20 107 41 132 7.42e-15 66.6
Msa1166370 AT4G28730.1 35.556 90 57 1 19 107 71 160 2.78e-14 65.9
Msa1166370 AT5G40370.1 31.250 96 66 0 16 111 1 96 1.86e-12 59.7
Msa1166370 AT5G20500.1 33.333 93 62 0 19 111 33 125 8.69e-12 58.5
Msa1166370 AT2G20270.1 33.333 87 57 1 26 111 83 169 2.43e-11 58.2
Msa1166370 AT4G28730.2 38.571 70 42 1 19 87 71 140 2.51e-11 57.4

Find 38 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTCCATTTCCCTTCCTTC+AGG 0.237314 7_4:-58481868 None:intergenic
CCTGTTCCTGCTGTGTTCAT+TGG 0.272350 7_4:+58481919 Msa1166370:CDS
TGTTTCAAGAACTTGGGATT+AGG 0.357723 7_4:+58481818 Msa1166370:CDS
TCTCCATTTCCCTTCCTTCA+GGG 0.366539 7_4:-58481867 None:intergenic
AACATTCTGTTTCAAGAACT+TGG 0.368312 7_4:+58481811 Msa1166370:CDS
GTGAAGGGACATAATTTCAT+TGG 0.393227 7_4:-58481962 None:intergenic
AGACCCTGAAGGAAGGGAAA+TGG 0.401791 7_4:+58481864 Msa1166370:CDS
GAATCATGATACCTTGTTGC+TGG 0.424030 7_4:+58482037 Msa1166370:exon
TTGAGGTTGGCATCTGAAAA+AGG 0.425553 7_4:+58481742 Msa1166370:CDS
TGATTCAATTAGAACGAGAT+TGG 0.435807 7_4:-58482020 None:intergenic
AGAACTTGGGATTAGGCCTA+TGG 0.436071 7_4:+58481825 Msa1166370:CDS
GTTCCTGCTGTGTTCATTGG+AGG 0.437740 7_4:+58481922 Msa1166370:CDS
GAGAAAGCTTTGTTGAGGTT+AGG 0.441107 7_4:+58481886 Msa1166370:CDS
TTCATTGGAGGGCAACTGAT+GGG 0.446550 7_4:+58481934 Msa1166370:CDS
CCAATGAACACAGCAGGAAC+AGG 0.496655 7_4:-58481919 None:intergenic
TTGTTGCTGGAAGAATAAAC+TGG 0.496668 7_4:+58482050 Msa1166370:three_prime_UTR
GTTCATTGGAGGGCAACTGA+TGG 0.499451 7_4:+58481933 Msa1166370:CDS
ATTGAGTGAGGGAGCCACTT+AGG 0.507881 7_4:-58481984 None:intergenic
CAATTAGAACGAGATTGGTA+TGG 0.511391 7_4:-58482015 None:intergenic
TGATCAATTTCATGAACCAT+AGG 0.516130 7_4:-58481841 None:intergenic
TTCCTGCTGTGTTCATTGGA+GGG 0.520038 7_4:+58481923 Msa1166370:CDS
TAACAGTATCATCATCAAGA+TGG 0.522532 7_4:+58481711 Msa1166370:CDS
ACATTCTGTTTCAAGAACTT+GGG 0.523434 7_4:+58481812 Msa1166370:CDS
TGCCCTCCAATGAACACAGC+AGG 0.533916 7_4:-58481925 None:intergenic
TTGATCAAGACCCTGAAGGA+AGG 0.541164 7_4:+58481857 Msa1166370:CDS
AAGGGACATAATTTCATTGG+TGG 0.541849 7_4:-58481959 None:intergenic
ATTATGTCCCTTCACCTAAG+TGG 0.557113 7_4:+58481970 Msa1166370:CDS
TGATCAAGACCCTGAAGGAA+GGG 0.574619 7_4:+58481858 Msa1166370:CDS
TCATTGGAGGGCAACTGATG+GGG 0.576911 7_4:+58481935 Msa1166370:CDS
AGTTTATTCTTCCAGCAACA+AGG 0.579317 7_4:-58482048 None:intergenic
TGAGGGAGCCACTTAGGTGA+AGG 0.580811 7_4:-58481978 None:intergenic
AAATGGAGAAAGCTTTGTTG+AGG 0.591044 7_4:+58481881 Msa1166370:CDS
GATGGACAAAGTGTTGAGGT+TGG 0.596621 7_4:+58481729 Msa1166370:CDS
GAGGGAGCCACTTAGGTGAA+GGG 0.625802 7_4:-58481977 None:intergenic
TCAAGATGGACAAAGTGTTG+AGG 0.649690 7_4:+58481725 Msa1166370:CDS
TGGCTTGATCAATTGAGTGA+GGG 0.652206 7_4:-58481995 None:intergenic
GAAATTGATCAAGACCCTGA+AGG 0.656540 7_4:+58481853 Msa1166370:CDS
ATGGCTTGATCAATTGAGTG+AGG 0.695900 7_4:-58481996 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGATAGAAAATTATATATGA+TGG - chr7_4:58481486-58481505 None:intergenic 15.0%
!! AGATAGAAAATTATATATGA+TGG - chr7_4:58481486-58481505 None:intergenic 15.0%
!!! AATTTTCTTAATGTTGAAAG+TGG - chr7_4:58481219-58481238 None:intergenic 20.0%
!! AAAATTATATATGATGGTTG+AGG - chr7_4:58481480-58481499 None:intergenic 20.0%
!! ATTTGTTTAGATTATTACCT+TGG - chr7_4:58481592-58481611 None:intergenic 20.0%
!!! AATTTTCTTAATGTTGAAAG+TGG - chr7_4:58481219-58481238 None:intergenic 20.0%
!! AAAATTATATATGATGGTTG+AGG - chr7_4:58481480-58481499 None:intergenic 20.0%
!! ATTTGTTTAGATTATTACCT+TGG - chr7_4:58481592-58481611 None:intergenic 20.0%
! ATGTTCTACACAAATAGTTA+TGG + chr7_4:58481296-58481315 Msa1166370:intron 25.0%
! TTTATTCGATATAGCAAGTT+GGG - chr7_4:58481352-58481371 None:intergenic 25.0%
!! TTTTATTCGATATAGCAAGT+TGG - chr7_4:58481353-58481372 None:intergenic 25.0%
! GTATTTATAGGAACTAACTT+GGG - chr7_4:58481426-58481445 None:intergenic 25.0%
! AGTATTTATAGGAACTAACT+TGG - chr7_4:58481427-58481446 None:intergenic 25.0%
!!! TGGTAAATGAGAGTATTTAT+AGG - chr7_4:58481438-58481457 None:intergenic 25.0%
!!! GTTATTTTGAAATGAAATGG+TGG - chr7_4:58481458-58481477 None:intergenic 25.0%
!!! GAGGTTATTTTGAAATGAAA+TGG - chr7_4:58481461-58481480 None:intergenic 25.0%
! ATGTTCTACACAAATAGTTA+TGG + chr7_4:58481296-58481315 Msa1166370:intron 25.0%
! TTTATTCGATATAGCAAGTT+GGG - chr7_4:58481352-58481371 None:intergenic 25.0%
!! TTTTATTCGATATAGCAAGT+TGG - chr7_4:58481353-58481372 None:intergenic 25.0%
! GTATTTATAGGAACTAACTT+GGG - chr7_4:58481426-58481445 None:intergenic 25.0%
! AGTATTTATAGGAACTAACT+TGG - chr7_4:58481427-58481446 None:intergenic 25.0%
!!! TGGTAAATGAGAGTATTTAT+AGG - chr7_4:58481438-58481457 None:intergenic 25.0%
!!! GTTATTTTGAAATGAAATGG+TGG - chr7_4:58481458-58481477 None:intergenic 25.0%
!!! GAGGTTATTTTGAAATGAAA+TGG - chr7_4:58481461-58481480 None:intergenic 25.0%
AAAGAATCAAACAAGTTCAG+TGG + chr7_4:58481083-58481102 Msa1166370:intron 30.0%
TGAGAATCTGATATTGCTTT+CGG - chr7_4:58481135-58481154 None:intergenic 30.0%
! ACACAAATAGTTATGGACTA+TGG + chr7_4:58481303-58481322 Msa1166370:intron 30.0%
TAACAGTATCATCATCAAGA+TGG + chr7_4:58481711-58481730 Msa1166370:CDS 30.0%
AACATTCTGTTTCAAGAACT+TGG + chr7_4:58481811-58481830 Msa1166370:CDS 30.0%
ACATTCTGTTTCAAGAACTT+GGG + chr7_4:58481812-58481831 Msa1166370:CDS 30.0%
TGATCAATTTCATGAACCAT+AGG - chr7_4:58481844-58481863 None:intergenic 30.0%
TGATTCAATTAGAACGAGAT+TGG - chr7_4:58482023-58482042 None:intergenic 30.0%
AAAGAATCAAACAAGTTCAG+TGG + chr7_4:58481083-58481102 Msa1166370:intron 30.0%
TGAGAATCTGATATTGCTTT+CGG - chr7_4:58481135-58481154 None:intergenic 30.0%
! ACACAAATAGTTATGGACTA+TGG + chr7_4:58481303-58481322 Msa1166370:intron 30.0%
TAACAGTATCATCATCAAGA+TGG + chr7_4:58481711-58481730 Msa1166370:CDS 30.0%
AACATTCTGTTTCAAGAACT+TGG + chr7_4:58481811-58481830 Msa1166370:CDS 30.0%
ACATTCTGTTTCAAGAACTT+GGG + chr7_4:58481812-58481831 Msa1166370:CDS 30.0%
TGATCAATTTCATGAACCAT+AGG - chr7_4:58481844-58481863 None:intergenic 30.0%
TGATTCAATTAGAACGAGAT+TGG - chr7_4:58482023-58482042 None:intergenic 30.0%
!! ATTGCCTTTTGAGAAGAAGT+GGG - chr7_4:58481012-58481031 None:intergenic 35.0%
CTTTGAATCGTTATGGAGAA+AGG - chr7_4:58481165-58481184 None:intergenic 35.0%
! TCAATTAATACCTGGTTCTC+GGG - chr7_4:58481196-58481215 None:intergenic 35.0%
! GTCAATTAATACCTGGTTCT+CGG - chr7_4:58481197-58481216 None:intergenic 35.0%
GAAAGTGGTCAATTAATACC+TGG - chr7_4:58481204-58481223 None:intergenic 35.0%
TTCGATCTGATGGTTGTATT+GGG - chr7_4:58481525-58481544 None:intergenic 35.0%
ATTCGATCTGATGGTTGTAT+TGG - chr7_4:58481526-58481545 None:intergenic 35.0%
! AATTCAGTTTCGATTCGATC+TGG + chr7_4:58481543-58481562 Msa1166370:intron 35.0%
TGTTTCAAGAACTTGGGATT+AGG + chr7_4:58481818-58481837 Msa1166370:CDS 35.0%
!! AAATGGAGAAAGCTTTGTTG+AGG + chr7_4:58481881-58481900 Msa1166370:CDS 35.0%
AAGGGACATAATTTCATTGG+TGG - chr7_4:58481962-58481981 None:intergenic 35.0%
GTGAAGGGACATAATTTCAT+TGG - chr7_4:58481965-58481984 None:intergenic 35.0%
CAATTAGAACGAGATTGGTA+TGG - chr7_4:58482018-58482037 None:intergenic 35.0%
AGTTTATTCTTCCAGCAACA+AGG - chr7_4:58482051-58482070 None:intergenic 35.0%
TTGTTGCTGGAAGAATAAAC+TGG + chr7_4:58482050-58482069 Msa1166370:three_prime_UTR 35.0%
!! ATTGCCTTTTGAGAAGAAGT+GGG - chr7_4:58481012-58481031 None:intergenic 35.0%
CTTTGAATCGTTATGGAGAA+AGG - chr7_4:58481165-58481184 None:intergenic 35.0%
! TCAATTAATACCTGGTTCTC+GGG - chr7_4:58481196-58481215 None:intergenic 35.0%
! GTCAATTAATACCTGGTTCT+CGG - chr7_4:58481197-58481216 None:intergenic 35.0%
GAAAGTGGTCAATTAATACC+TGG - chr7_4:58481204-58481223 None:intergenic 35.0%
TTCGATCTGATGGTTGTATT+GGG - chr7_4:58481525-58481544 None:intergenic 35.0%
ATTCGATCTGATGGTTGTAT+TGG - chr7_4:58481526-58481545 None:intergenic 35.0%
! AATTCAGTTTCGATTCGATC+TGG + chr7_4:58481543-58481562 Msa1166370:intron 35.0%
TGTTTCAAGAACTTGGGATT+AGG + chr7_4:58481818-58481837 Msa1166370:CDS 35.0%
!! AAATGGAGAAAGCTTTGTTG+AGG + chr7_4:58481881-58481900 Msa1166370:CDS 35.0%
AAGGGACATAATTTCATTGG+TGG - chr7_4:58481962-58481981 None:intergenic 35.0%
GTGAAGGGACATAATTTCAT+TGG - chr7_4:58481965-58481984 None:intergenic 35.0%
CAATTAGAACGAGATTGGTA+TGG - chr7_4:58482018-58482037 None:intergenic 35.0%
AGTTTATTCTTCCAGCAACA+AGG - chr7_4:58482051-58482070 None:intergenic 35.0%
TTGTTGCTGGAAGAATAAAC+TGG + chr7_4:58482050-58482069 Msa1166370:three_prime_UTR 35.0%
!! CATTGCCTTTTGAGAAGAAG+TGG - chr7_4:58481013-58481032 None:intergenic 40.0%
CACTTCTTCTCAAAAGGCAA+TGG + chr7_4:58481011-58481030 Msa1166370:intron 40.0%
! TCAGCTGCTTTGAATCGTTA+TGG - chr7_4:58481172-58481191 None:intergenic 40.0%
AGTTGGGATAGACTTAGACT+AGG - chr7_4:58481336-58481355 None:intergenic 40.0%
! TTGGGAAGCACATTGAAAAG+AGG - chr7_4:58481408-58481427 None:intergenic 40.0%
TCTGATGGTTGTATTGGGTT+TGG - chr7_4:58481520-58481539 None:intergenic 40.0%
CGAAACTGAATTCGATCTGA+TGG - chr7_4:58481535-58481554 None:intergenic 40.0%
!! TCAAGATGGACAAAGTGTTG+AGG + chr7_4:58481725-58481744 Msa1166370:CDS 40.0%
TTGAGGTTGGCATCTGAAAA+AGG + chr7_4:58481742-58481761 Msa1166370:CDS 40.0%
GAAATTGATCAAGACCCTGA+AGG + chr7_4:58481853-58481872 Msa1166370:CDS 40.0%
!! GAGAAAGCTTTGTTGAGGTT+AGG + chr7_4:58481886-58481905 Msa1166370:CDS 40.0%
ATTATGTCCCTTCACCTAAG+TGG + chr7_4:58481970-58481989 Msa1166370:CDS 40.0%
TGGCTTGATCAATTGAGTGA+GGG - chr7_4:58481998-58482017 None:intergenic 40.0%
ATGGCTTGATCAATTGAGTG+AGG - chr7_4:58481999-58482018 None:intergenic 40.0%
GAATCATGATACCTTGTTGC+TGG + chr7_4:58482037-58482056 Msa1166370:exon 40.0%
!! CATTGCCTTTTGAGAAGAAG+TGG - chr7_4:58481013-58481032 None:intergenic 40.0%
CACTTCTTCTCAAAAGGCAA+TGG + chr7_4:58481011-58481030 Msa1166370:intron 40.0%
! TCAGCTGCTTTGAATCGTTA+TGG - chr7_4:58481172-58481191 None:intergenic 40.0%
AGTTGGGATAGACTTAGACT+AGG - chr7_4:58481336-58481355 None:intergenic 40.0%
! TTGGGAAGCACATTGAAAAG+AGG - chr7_4:58481408-58481427 None:intergenic 40.0%
TCTGATGGTTGTATTGGGTT+TGG - chr7_4:58481520-58481539 None:intergenic 40.0%
CGAAACTGAATTCGATCTGA+TGG - chr7_4:58481535-58481554 None:intergenic 40.0%
!! TCAAGATGGACAAAGTGTTG+AGG + chr7_4:58481725-58481744 Msa1166370:CDS 40.0%
TTGAGGTTGGCATCTGAAAA+AGG + chr7_4:58481742-58481761 Msa1166370:CDS 40.0%
GAAATTGATCAAGACCCTGA+AGG + chr7_4:58481853-58481872 Msa1166370:CDS 40.0%
!! GAGAAAGCTTTGTTGAGGTT+AGG + chr7_4:58481886-58481905 Msa1166370:CDS 40.0%
ATTATGTCCCTTCACCTAAG+TGG + chr7_4:58481970-58481989 Msa1166370:CDS 40.0%
TGGCTTGATCAATTGAGTGA+GGG - chr7_4:58481998-58482017 None:intergenic 40.0%
ATGGCTTGATCAATTGAGTG+AGG - chr7_4:58481999-58482018 None:intergenic 40.0%
GAATCATGATACCTTGTTGC+TGG + chr7_4:58482037-58482056 Msa1166370:exon 40.0%
!! CTTTTGAGAAGAAGTGGGAG+TGG - chr7_4:58481007-58481026 None:intergenic 45.0%
CACTCCCACTTCTTCTCAAA+AGG + chr7_4:58481005-58481024 Msa1166370:intron 45.0%
! TCAGTTTCGATTCGATCTGG+TGG + chr7_4:58481546-58481565 Msa1166370:intron 45.0%
! TTCGATTCGATCTGGTGGTT+TGG + chr7_4:58481551-58481570 Msa1166370:intron 45.0%
! TCGATTCGATCTGGTGGTTT+GGG + chr7_4:58481552-58481571 Msa1166370:intron 45.0%
GGGCGGTCTAAATAAATCCA+AGG + chr7_4:58481572-58481591 Msa1166370:intron 45.0%
!! GATGGACAAAGTGTTGAGGT+TGG + chr7_4:58481729-58481748 Msa1166370:CDS 45.0%
GTTGGCATCTGAAAAAGGTG+TGG + chr7_4:58481747-58481766 Msa1166370:CDS 45.0%
AGAACTTGGGATTAGGCCTA+TGG + chr7_4:58481825-58481844 Msa1166370:CDS 45.0%
TTGATCAAGACCCTGAAGGA+AGG + chr7_4:58481857-58481876 Msa1166370:CDS 45.0%
TGATCAAGACCCTGAAGGAA+GGG + chr7_4:58481858-58481877 Msa1166370:CDS 45.0%
TCTCCATTTCCCTTCCTTCA+GGG - chr7_4:58481870-58481889 None:intergenic 45.0%
TTCTCCATTTCCCTTCCTTC+AGG - chr7_4:58481871-58481890 None:intergenic 45.0%
TTCCTGCTGTGTTCATTGGA+GGG + chr7_4:58481923-58481942 Msa1166370:CDS 45.0%
TTCATTGGAGGGCAACTGAT+GGG + chr7_4:58481934-58481953 Msa1166370:CDS 45.0%
!! CTTTTGAGAAGAAGTGGGAG+TGG - chr7_4:58481007-58481026 None:intergenic 45.0%
CACTCCCACTTCTTCTCAAA+AGG + chr7_4:58481005-58481024 Msa1166370:intron 45.0%
! TCAGTTTCGATTCGATCTGG+TGG + chr7_4:58481546-58481565 Msa1166370:intron 45.0%
! TTCGATTCGATCTGGTGGTT+TGG + chr7_4:58481551-58481570 Msa1166370:intron 45.0%
! TCGATTCGATCTGGTGGTTT+GGG + chr7_4:58481552-58481571 Msa1166370:intron 45.0%
GGGCGGTCTAAATAAATCCA+AGG + chr7_4:58481572-58481591 Msa1166370:intron 45.0%
!! GATGGACAAAGTGTTGAGGT+TGG + chr7_4:58481729-58481748 Msa1166370:CDS 45.0%
GTTGGCATCTGAAAAAGGTG+TGG + chr7_4:58481747-58481766 Msa1166370:CDS 45.0%
AGAACTTGGGATTAGGCCTA+TGG + chr7_4:58481825-58481844 Msa1166370:CDS 45.0%
TTGATCAAGACCCTGAAGGA+AGG + chr7_4:58481857-58481876 Msa1166370:CDS 45.0%
TGATCAAGACCCTGAAGGAA+GGG + chr7_4:58481858-58481877 Msa1166370:CDS 45.0%
TCTCCATTTCCCTTCCTTCA+GGG - chr7_4:58481870-58481889 None:intergenic 45.0%
TTCTCCATTTCCCTTCCTTC+AGG - chr7_4:58481871-58481890 None:intergenic 45.0%
TTCCTGCTGTGTTCATTGGA+GGG + chr7_4:58481923-58481942 Msa1166370:CDS 45.0%
TTCATTGGAGGGCAACTGAT+GGG + chr7_4:58481934-58481953 Msa1166370:CDS 45.0%
! ATTCGATCTGGTGGTTTGGG+CGG + chr7_4:58481555-58481574 Msa1166370:intron 50.0%
AGACCCTGAAGGAAGGGAAA+TGG + chr7_4:58481864-58481883 Msa1166370:CDS 50.0%
CCAATGAACACAGCAGGAAC+AGG - chr7_4:58481922-58481941 None:intergenic 50.0%
CCTGTTCCTGCTGTGTTCAT+TGG + chr7_4:58481919-58481938 Msa1166370:CDS 50.0%
GTTCCTGCTGTGTTCATTGG+AGG + chr7_4:58481922-58481941 Msa1166370:CDS 50.0%
GTTCATTGGAGGGCAACTGA+TGG + chr7_4:58481933-58481952 Msa1166370:CDS 50.0%
TCATTGGAGGGCAACTGATG+GGG + chr7_4:58481935-58481954 Msa1166370:CDS 50.0%
ATTGAGTGAGGGAGCCACTT+AGG - chr7_4:58481987-58482006 None:intergenic 50.0%
! ATTCGATCTGGTGGTTTGGG+CGG + chr7_4:58481555-58481574 Msa1166370:intron 50.0%
AGACCCTGAAGGAAGGGAAA+TGG + chr7_4:58481864-58481883 Msa1166370:CDS 50.0%
CCAATGAACACAGCAGGAAC+AGG - chr7_4:58481922-58481941 None:intergenic 50.0%
CCTGTTCCTGCTGTGTTCAT+TGG + chr7_4:58481919-58481938 Msa1166370:CDS 50.0%
GTTCCTGCTGTGTTCATTGG+AGG + chr7_4:58481922-58481941 Msa1166370:CDS 50.0%
GTTCATTGGAGGGCAACTGA+TGG + chr7_4:58481933-58481952 Msa1166370:CDS 50.0%
TCATTGGAGGGCAACTGATG+GGG + chr7_4:58481935-58481954 Msa1166370:CDS 50.0%
ATTGAGTGAGGGAGCCACTT+AGG - chr7_4:58481987-58482006 None:intergenic 50.0%
TGCCCTCCAATGAACACAGC+AGG - chr7_4:58481928-58481947 None:intergenic 55.0%
GAGGGAGCCACTTAGGTGAA+GGG - chr7_4:58481980-58481999 None:intergenic 55.0%
TGAGGGAGCCACTTAGGTGA+AGG - chr7_4:58481981-58482000 None:intergenic 55.0%
TGCCCTCCAATGAACACAGC+AGG - chr7_4:58481928-58481947 None:intergenic 55.0%
GAGGGAGCCACTTAGGTGAA+GGG - chr7_4:58481980-58481999 None:intergenic 55.0%
TGAGGGAGCCACTTAGGTGA+AGG - chr7_4:58481981-58482000 None:intergenic 55.0%
AGCAGCTGATCCCGAGAACC+AGG + chr7_4:58481183-58481202 Msa1166370:intron 60.0%
AGCAGCTGATCCCGAGAACC+AGG + chr7_4:58481183-58481202 Msa1166370:intron 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 58480972 58482221 58480972 ID=Msa1166370;Name=Msa1166370
chr7_4 mRNA 58480972 58482221 58480972 ID=Msa1166370-mRNA-1;Parent=Msa1166370;Name=Msa1166370-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0|0.5|0.5|0|0|2|183|119
chr7_4 exon 58480972 58480976 58480972 ID=Msa1166370-mRNA-1:exon:17971;Parent=Msa1166370-mRNA-1
chr7_4 exon 58481684 58482221 58481684 ID=Msa1166370-mRNA-1:exon:17972;Parent=Msa1166370-mRNA-1
chr7_4 CDS 58480972 58480976 58480972 ID=Msa1166370-mRNA-1:cds;Parent=Msa1166370-mRNA-1
chr7_4 CDS 58481684 58482038 58481684 ID=Msa1166370-mRNA-1:cds;Parent=Msa1166370-mRNA-1
chr7_4 three_prime_UTR 58482039 58482221 58482039 ID=Msa1166370-mRNA-1:three_prime_utr;Parent=Msa1166370-mRNA-1
Gene Sequence

>Msa1166370

ATGAAAAGAACAACTACAAGAACTAGAACTTTTAACAGTATCATCATCAAGATGGACAAAGTGTTGAGGTTGGCATCTGAAAAAGGTGTGGTGATTTTCACAAAGAGTTCATGTTGTCTATGCTATGCAGTTAACATTCTGTTTCAAGAACTTGGGATTAGGCCTATGGTTCATGAAATTGATCAAGACCCTGAAGGAAGGGAAATGGAGAAAGCTTTGTTGAGGTTAGGTTGTACTGCACCTGTTCCTGCTGTGTTCATTGGAGGGCAACTGATGGGGTCCACCAATGAAATTATGTCCCTTCACCTAAGTGGCTCCCTCACTCAATTGATCAAGCCATACCAATCTCGTTCTAATTGA

Protein sequence

>Msa1166370

MKRTTTRTRTFNSIIIKMDKVLRLASEKGVVIFTKSSCCLCYAVNILFQELGIRPMVHEIDQDPEGREMEKALLRLGCTAPVPAVFIGGQLMGSTNEIMSLHLSGSLTQLIKPYQSRSN*