Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630720 | XP_013454882.1 | 97.059 | 204 | 6 | 0 | 5 | 208 | 48 | 251 | 3.28e-138 | 397 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630720 | sp|Q8RX71|BAG4_ARATH | 51.741 | 201 | 96 | 1 | 8 | 208 | 70 | 269 | 3.50e-61 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630720 | A0A072UST0 | 97.059 | 204 | 6 | 0 | 5 | 208 | 48 | 251 | 1.56e-138 | 397 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0084940 | Msa0630720 | 0.802770 | 4.791143e-49 | -8.615850e-47 |
| Msa0626830 | Msa0630720 | 0.815536 | 8.791052e-52 | -8.615850e-47 |
| Msa0630720 | Msa0638320 | 0.800683 | 1.284407e-48 | -8.615850e-47 |
| Msa0630720 | Msa0661190 | -0.808228 | 3.434234e-50 | -8.615850e-47 |
| Msa0630720 | Msa0673460 | 0.805162 | 1.525092e-49 | -8.615850e-47 |
| Msa0630720 | Msa0696450 | 0.834940 | 2.241074e-56 | -8.615850e-47 |
| Msa0630720 | Msa0937670 | 0.813037 | 3.133986e-51 | -8.615850e-47 |
| Msa0630720 | Msa0937810 | 0.814248 | 1.696778e-51 | -8.615850e-47 |
| Msa0630720 | Msa1079590 | 0.830055 | 3.641882e-55 | -8.615850e-47 |
| Msa0630720 | Msa1082500 | 0.830225 | 3.309799e-55 | -8.615850e-47 |
| Msa0630720 | Msa1083210 | 0.800292 | 1.543544e-48 | -8.615850e-47 |
| Msa0630720 | Msa1127830 | 0.801387 | 9.221353e-49 | -8.615850e-47 |
| Msa0630720 | Msa1131220 | 0.802497 | 5.453988e-49 | -8.615850e-47 |
| Msa0630720 | Msa1168160 | 0.806062 | 9.873428e-50 | -8.615850e-47 |
| Msa0630720 | Msa1199560 | 0.810448 | 1.146964e-50 | -8.615850e-47 |
| Msa0630720 | Msa1203250 | 0.804938 | 1.698310e-49 | -8.615850e-47 |
| Msa0630720 | Msa1204530 | 0.803613 | 3.206749e-49 | -8.615850e-47 |
| Msa0630720 | Msa1233890 | 0.812393 | 4.337379e-51 | -8.615850e-47 |
| Msa0630720 | Msa1283860 | 0.808929 | 2.433015e-50 | -8.615850e-47 |
| Msa0630720 | Msa1305340 | 0.804559 | 2.038347e-49 | -8.615850e-47 |
| Msa0630720 | Msa1340020 | 0.827333 | 1.657355e-54 | -8.615850e-47 |
| Msa0630720 | Msa1345360 | 0.808672 | 2.760282e-50 | -8.615850e-47 |
| Msa0630720 | Msa1411020 | 0.800984 | 1.114927e-48 | -8.615850e-47 |
| Msa0630720 | Msa1434350 | 0.803736 | 3.023090e-49 | -8.615850e-47 |
| Msa0630720 | Msa1457440 | 0.803450 | 3.465400e-49 | -8.615850e-47 |
| Msa0145440 | Msa0630720 | 0.811212 | 7.837161e-51 | -8.615850e-47 |
| Msa0159930 | Msa0630720 | 0.802794 | 4.737732e-49 | -8.615850e-47 |
| Msa0184020 | Msa0630720 | 0.817872 | 2.631603e-52 | -8.615850e-47 |
| Msa0197660 | Msa0630720 | 0.833274 | 5.860903e-56 | -8.615850e-47 |
| Msa0373930 | Msa0630720 | 0.811107 | 8.261332e-51 | -8.615850e-47 |
| Msa0380040 | Msa0630720 | 0.818064 | 2.382127e-52 | -8.615850e-47 |
| Msa0399340 | Msa0630720 | 0.804347 | 2.256145e-49 | -8.615850e-47 |
| Msa0425010 | Msa0630720 | 0.813244 | 2.823561e-51 | -8.615850e-47 |
| Msa0426330 | Msa0630720 | 0.806804 | 6.886153e-50 | -8.615850e-47 |
| Msa0429290 | Msa0630720 | 0.821100 | 4.830212e-53 | -8.615850e-47 |
| Msa0433640 | Msa0630720 | 0.805684 | 1.185130e-49 | -8.615850e-47 |
| Msa0435390 | Msa0630720 | 0.827395 | 1.602338e-54 | -8.615850e-47 |
| Msa0435400 | Msa0630720 | 0.807596 | 4.680171e-50 | -8.615850e-47 |
| Msa0471800 | Msa0630720 | 0.808234 | 3.423022e-50 | -8.615850e-47 |
| Msa0475580 | Msa0630720 | 0.828609 | 8.173105e-55 | -8.615850e-47 |
| Msa0239800 | Msa0630720 | 0.831620 | 1.505661e-55 | -8.615850e-47 |
| Msa0277820 | Msa0630720 | 0.809377 | 1.950322e-50 | -8.615850e-47 |
| Msa0317510 | Msa0630720 | 0.835524 | 1.595759e-56 | -8.615850e-47 |
| Msa0333720 | Msa0630720 | -0.810389 | 1.181213e-50 | -8.615850e-47 |
| Msa0347360 | Msa0630720 | 0.800573 | 1.352937e-48 | -8.615850e-47 |
| Msa0484780 | Msa0630720 | 0.803549 | 3.306260e-49 | -8.615850e-47 |
| Msa0516320 | Msa0630720 | 0.819660 | 1.033748e-52 | -8.615850e-47 |
| Msa0519220 | Msa0630720 | 0.805551 | 1.263879e-49 | -8.615850e-47 |
| Msa0526890 | Msa0630720 | 0.811280 | 7.574545e-51 | -8.615850e-47 |
| Msa0578040 | Msa0630720 | 0.803477 | 3.421896e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630720 | MtrunA17_Chr4g0007601 | 97.059 | 204 | 6 | 0 | 5 | 208 | 48 | 251 | 3.01e-142 | 397 |
| Msa0630720 | MtrunA17_Chr7g0243051 | 65.000 | 160 | 51 | 1 | 2 | 161 | 66 | 220 | 1.63e-63 | 196 |
| Msa0630720 | MtrunA17_Chr6g0473621 | 51.299 | 154 | 75 | 0 | 8 | 161 | 83 | 236 | 1.00e-41 | 144 |
| Msa0630720 | MtrunA17_Chr1g0203771 | 47.097 | 155 | 82 | 0 | 8 | 162 | 71 | 225 | 2.76e-38 | 134 |
| Msa0630720 | MtrunA17_Chr2g0285591 | 36.994 | 173 | 104 | 1 | 8 | 180 | 76 | 243 | 2.89e-31 | 114 |
| Msa0630720 | MtrunA17_Chr4g0057261 | 36.058 | 208 | 120 | 3 | 8 | 208 | 79 | 280 | 2.72e-29 | 110 |
| Msa0630720 | MtrunA17_Chr6g0458271 | 51.667 | 60 | 29 | 0 | 5 | 64 | 80 | 139 | 4.68e-11 | 58.9 |
| Msa0630720 | MtrunA17_Chr6g0458281 | 51.667 | 60 | 29 | 0 | 5 | 64 | 77 | 136 | 5.49e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0630720 | AT3G51780.1 | 51.741 | 201 | 96 | 1 | 8 | 208 | 70 | 269 | 3.56e-62 | 194 |
| Msa0630720 | AT5G52060.1 | 45.455 | 154 | 84 | 0 | 8 | 161 | 89 | 242 | 1.17e-37 | 134 |
| Msa0630720 | AT5G07220.1 | 34.583 | 240 | 115 | 2 | 8 | 208 | 67 | 303 | 1.74e-35 | 127 |
| Msa0630720 | AT5G62100.2 | 34.466 | 206 | 130 | 2 | 5 | 208 | 58 | 260 | 2.08e-30 | 113 |
| Msa0630720 | AT5G62100.1 | 33.180 | 217 | 129 | 4 | 5 | 208 | 58 | 271 | 1.32e-27 | 106 |
| Msa0630720 | AT5G62100.5 | 37.410 | 139 | 87 | 0 | 5 | 143 | 58 | 196 | 2.54e-24 | 95.5 |
| Msa0630720 | AT5G62100.4 | 36.691 | 139 | 88 | 0 | 5 | 143 | 58 | 196 | 1.89e-23 | 93.6 |
| Msa0630720 | AT5G14360.1 | 47.368 | 76 | 37 | 1 | 5 | 80 | 89 | 161 | 7.69e-12 | 61.6 |
Find 52 sgRNAs with CRISPR-Local
Find 304 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTGCCACTTTGGCTAAA+AGG | 0.236418 | 4_3:-12737771 | None:intergenic |
| ACTTACCCTTTACCCCTTCC+TGG | 0.249699 | 4_3:-12735810 | None:intergenic |
| AAGAAAAGTCTTTGTTGTTC+AGG | 0.267677 | 4_3:-12735751 | None:intergenic |
| GTCGTTCGAGCCTTCAATTC+CGG | 0.305581 | 4_3:-12737829 | None:intergenic |
| AAAGCTACTGAAGCTATTAA+TGG | 0.320180 | 4_3:+12735910 | Msa0630720:CDS |
| TCTACAGGTGCGTCGTGTGC+AGG | 0.324862 | 4_3:+12737704 | Msa0630720:intron |
| TATATGTGCTTGTCATGTTT+TGG | 0.332807 | 4_3:+12735674 | None:intergenic |
| GTAGAAGATGATGTTGTTGA+TGG | 0.343484 | 4_3:-12737855 | None:intergenic |
| AAATTGCTTGTACCTAAAAC+TGG | 0.353822 | 4_3:+12735721 | Msa0630720:CDS |
| CTGCAACTTTGCTTCACCTT+CGG | 0.356594 | 4_3:-12736172 | None:intergenic |
| AAGCTACTGAAGCTATTAAT+GGG | 0.357416 | 4_3:+12735911 | Msa0630720:CDS |
| CAATTGGTTGTTCCTGTGGC+AGG | 0.364539 | 4_3:-12737792 | None:intergenic |
| TGTGCAGGGCCTCGTGGATA+TGG | 0.372183 | 4_3:+12737719 | Msa0630720:CDS |
| CTGCCACAGGAACAACCAAT+TGG | 0.408679 | 4_3:+12737793 | Msa0630720:CDS |
| ACCTTTGATACCGGAATTGA+AGG | 0.408962 | 4_3:+12737819 | Msa0630720:CDS |
| AGTCAATTGCTGAAACTAGA+TGG | 0.412180 | 4_3:+12736141 | Msa0630720:CDS |
| AGGAATAGAAAAGGATGATA+AGG | 0.413216 | 4_3:+12735777 | Msa0630720:CDS |
| CTGTGGCAGGATTGCCACTT+TGG | 0.420220 | 4_3:-12737779 | None:intergenic |
| AGGTGGACAAGCTCTCTGAT+AGG | 0.425497 | 4_3:+12735944 | Msa0630720:CDS |
| GGTATCAAAGGTTTCCCAAT+TGG | 0.433564 | 4_3:-12737808 | None:intergenic |
| ATTGCACCAGGAAGGGGTAA+AGG | 0.462161 | 4_3:+12735804 | Msa0630720:CDS |
| CTACAGGTGCGTCGTGTGCA+GGG | 0.463922 | 4_3:+12737705 | Msa0630720:intron |
| GATTGCCACTTTGGCTAAAA+GGG | 0.477871 | 4_3:-12737770 | None:intergenic |
| GCCACTTTGGCTAAAAGGGT+TGG | 0.481688 | 4_3:-12737766 | None:intergenic |
| TTGGAAGCGGCTATCAATGC+AGG | 0.494388 | 4_3:+12736069 | Msa0630720:CDS |
| TTCCCAATTGGTTGTTCCTG+TGG | 0.495913 | 4_3:-12737796 | None:intergenic |
| TTAGGTGGCTGCCTTGGAAG+CGG | 0.498869 | 4_3:+12736056 | Msa0630720:intron |
| GCCTTCAATTCCGGTATCAA+AGG | 0.504976 | 4_3:-12737820 | None:intergenic |
| TTTCTTCAGAGGAATAGAAA+AGG | 0.505826 | 4_3:+12735768 | Msa0630720:CDS |
| TTGCACCAGGAAGGGGTAAA+GGG | 0.507688 | 4_3:+12735805 | Msa0630720:CDS |
| TGCCACAGGAACAACCAATT+GGG | 0.510930 | 4_3:+12737794 | Msa0630720:CDS |
| AATTGGGAAACCTTTGATAC+CGG | 0.513864 | 4_3:+12737810 | Msa0630720:CDS |
| GGTGGACAAGCTCTCTGATA+GGG | 0.515648 | 4_3:+12735945 | Msa0630720:CDS |
| GGAGCAATTGCACCAGGAAG+GGG | 0.531521 | 4_3:+12735798 | Msa0630720:CDS |
| TGCATTGATAGCCGCTTCCA+AGG | 0.543348 | 4_3:-12736067 | None:intergenic |
| AGGAGCAATTGCACCAGGAA+GGG | 0.549162 | 4_3:+12735797 | Msa0630720:CDS |
| AAGGAGCAATTGCACCAGGA+AGG | 0.551826 | 4_3:+12735796 | Msa0630720:CDS |
| AAATATCTCATGATTGGGAG+CGG | 0.555712 | 4_3:+12737880 | Msa0630720:CDS |
| TGATAAGGAGCAATTGCACC+AGG | 0.587143 | 4_3:+12735792 | Msa0630720:CDS |
| CAAAGTGGCAATCCTGCCAC+AGG | 0.588975 | 4_3:+12737780 | Msa0630720:CDS |
| GGATATGGTAGATTCTCTAA+AGG | 0.599325 | 4_3:+12737734 | Msa0630720:CDS |
| GCTGAAACTAGATGGAATTG+AGG | 0.614919 | 4_3:+12736149 | Msa0630720:CDS |
| GCGTCGTGTGCAGGGCCTCG+TGG | 0.614921 | 4_3:+12737713 | Msa0630720:CDS |
| ATCAGAGAGCTTGTCCACCT+CGG | 0.617214 | 4_3:-12735941 | None:intergenic |
| TAGCAAAGAGAAGAAACTTG+AGG | 0.627965 | 4_3:+12735861 | Msa0630720:CDS |
| TAATGGGGTTAGAGCCGAGG+TGG | 0.641529 | 4_3:+12735927 | Msa0630720:CDS |
| AAAGTTGCAGAGAAAAGCTG+AGG | 0.646187 | 4_3:+12736185 | Msa0630720:CDS |
| CTAGATGGAATTGAGGCCGA+AGG | 0.650728 | 4_3:+12736156 | Msa0630720:CDS |
| AGCTACTGAAGCTATTAATG+GGG | 0.652533 | 4_3:+12735912 | Msa0630720:CDS |
| TATTAATGGGGTTAGAGCCG+AGG | 0.654047 | 4_3:+12735924 | Msa0630720:CDS |
| TGGAAGCGGCTATCAATGCA+GGG | 0.656177 | 4_3:+12736070 | Msa0630720:CDS |
| GAGAATCTACCATATCCACG+AGG | 0.824806 | 4_3:-12737728 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTATATTATTAATTA+AGG | + | chr4_3:12736748-12736767 | Msa0630720:intron | 0.0% |
| !! | AAATATTATATTATTAATTA+AGG | + | chr4_3:12736748-12736767 | Msa0630720:intron | 0.0% |
| !!! | GATTATTATAATTTTTTAGG+TGG | + | chr4_3:12736041-12736060 | Msa0630720:intron | 15.0% |
| !!! | ATTTTATCATACATTTACAA+TGG | + | chr4_3:12737461-12737480 | Msa0630720:intron | 15.0% |
| !! | CAAATTTATATATAAAGTTG+TGG | + | chr4_3:12737621-12737640 | Msa0630720:intron | 15.0% |
| !!! | GATTATTATAATTTTTTAGG+TGG | + | chr4_3:12736041-12736060 | Msa0630720:intron | 15.0% |
| !!! | ATTTTATCATACATTTACAA+TGG | + | chr4_3:12737461-12737480 | Msa0630720:intron | 15.0% |
| !! | CAAATTTATATATAAAGTTG+TGG | + | chr4_3:12737621-12737640 | Msa0630720:intron | 15.0% |
| !! | TAAGAAGATTATTAAGGATT+CGG | - | chr4_3:12736347-12736366 | None:intergenic | 20.0% |
| !! | ATGAAAAATATCTTCTACAT+TGG | + | chr4_3:12736581-12736600 | Msa0630720:intron | 20.0% |
| !!! | TCATTTTGACTGTAAAAAAA+AGG | + | chr4_3:12736948-12736967 | Msa0630720:intron | 20.0% |
| !! | GATTTCAAATGAATTTGATT+TGG | - | chr4_3:12737220-12737239 | None:intergenic | 20.0% |
| !!! | AATTCATTTGAAATCACATT+TGG | + | chr4_3:12737225-12737244 | Msa0630720:intron | 20.0% |
| !! | TACAAAAATATCTCATGATT+GGG | + | chr4_3:12737875-12737894 | Msa0630720:CDS | 20.0% |
| !! | TAAGAAGATTATTAAGGATT+CGG | - | chr4_3:12736347-12736366 | None:intergenic | 20.0% |
| !! | ATGAAAAATATCTTCTACAT+TGG | + | chr4_3:12736581-12736600 | Msa0630720:intron | 20.0% |
| !!! | TCATTTTGACTGTAAAAAAA+AGG | + | chr4_3:12736948-12736967 | Msa0630720:intron | 20.0% |
| !! | GATTTCAAATGAATTTGATT+TGG | - | chr4_3:12737220-12737239 | None:intergenic | 20.0% |
| !!! | AATTCATTTGAAATCACATT+TGG | + | chr4_3:12737225-12737244 | Msa0630720:intron | 20.0% |
| !! | TACAAAAATATCTCATGATT+GGG | + | chr4_3:12737875-12737894 | Msa0630720:CDS | 20.0% |
| !!! | ATGTTTTGGTTTTCAATAAC+AGG | + | chr4_3:12735688-12735707 | Msa0630720:CDS | 25.0% |
| !! | TAAGTCAAAGATTTTGCTTA+TGG | + | chr4_3:12735828-12735847 | Msa0630720:CDS | 25.0% |
| ! | TGCTATTGAAATTGCTAATT+TGG | + | chr4_3:12736217-12736236 | Msa0630720:intron | 25.0% |
| ! | GCTATTGAAATTGCTAATTT+GGG | + | chr4_3:12736218-12736237 | Msa0630720:intron | 25.0% |
| !!! | TTGCATTTTTTTATTAGCCA+TGG | + | chr4_3:12736282-12736301 | Msa0630720:intron | 25.0% |
| ! | GAGTGATAAGAAGATTATTA+AGG | - | chr4_3:12736353-12736372 | None:intergenic | 25.0% |
| ! | CTGATCTAAGTCATAAAAAA+GGG | - | chr4_3:12736467-12736486 | None:intergenic | 25.0% |
| ! | TCTGATCTAAGTCATAAAAA+AGG | - | chr4_3:12736468-12736487 | None:intergenic | 25.0% |
| !! | AAGTAAAGTGATCTATGTTT+TGG | - | chr4_3:12737182-12737201 | None:intergenic | 25.0% |
| ! | ATGATCCATTAAGGAAATAA+GGG | - | chr4_3:12737275-12737294 | None:intergenic | 25.0% |
| ! | AATGATCCATTAAGGAAATA+AGG | - | chr4_3:12737276-12737295 | None:intergenic | 25.0% |
| !! | ATCATATACTGTCTTTTACT+TGG | + | chr4_3:12737367-12737386 | Msa0630720:intron | 25.0% |
| !!! | GAAGAAAGAGTTTTGAATAA+TGG | - | chr4_3:12737494-12737513 | None:intergenic | 25.0% |
| ! | CTGTTAAAAAAATAGTGCAT+TGG | + | chr4_3:12737549-12737568 | Msa0630720:intron | 25.0% |
| ! | CTACAAAAATATCTCATGAT+TGG | + | chr4_3:12737874-12737893 | Msa0630720:CDS | 25.0% |
| !!! | ATGTTTTGGTTTTCAATAAC+AGG | + | chr4_3:12735688-12735707 | Msa0630720:CDS | 25.0% |
| !! | TAAGTCAAAGATTTTGCTTA+TGG | + | chr4_3:12735828-12735847 | Msa0630720:CDS | 25.0% |
| ! | TGCTATTGAAATTGCTAATT+TGG | + | chr4_3:12736217-12736236 | Msa0630720:intron | 25.0% |
| ! | GCTATTGAAATTGCTAATTT+GGG | + | chr4_3:12736218-12736237 | Msa0630720:intron | 25.0% |
| !!! | TTGCATTTTTTTATTAGCCA+TGG | + | chr4_3:12736282-12736301 | Msa0630720:intron | 25.0% |
| ! | GAGTGATAAGAAGATTATTA+AGG | - | chr4_3:12736353-12736372 | None:intergenic | 25.0% |
| ! | CTGATCTAAGTCATAAAAAA+GGG | - | chr4_3:12736467-12736486 | None:intergenic | 25.0% |
| ! | TCTGATCTAAGTCATAAAAA+AGG | - | chr4_3:12736468-12736487 | None:intergenic | 25.0% |
| !! | AAGTAAAGTGATCTATGTTT+TGG | - | chr4_3:12737182-12737201 | None:intergenic | 25.0% |
| ! | ATGATCCATTAAGGAAATAA+GGG | - | chr4_3:12737275-12737294 | None:intergenic | 25.0% |
| ! | AATGATCCATTAAGGAAATA+AGG | - | chr4_3:12737276-12737295 | None:intergenic | 25.0% |
| !! | ATCATATACTGTCTTTTACT+TGG | + | chr4_3:12737367-12737386 | Msa0630720:intron | 25.0% |
| !!! | GAAGAAAGAGTTTTGAATAA+TGG | - | chr4_3:12737494-12737513 | None:intergenic | 25.0% |
| ! | CTGTTAAAAAAATAGTGCAT+TGG | + | chr4_3:12737549-12737568 | Msa0630720:intron | 25.0% |
| ! | CTACAAAAATATCTCATGAT+TGG | + | chr4_3:12737874-12737893 | Msa0630720:CDS | 25.0% |
| AAATTGCTTGTACCTAAAAC+TGG | + | chr4_3:12735721-12735740 | Msa0630720:CDS | 30.0% | |
| !! | AAGAAAAGTCTTTGTTGTTC+AGG | - | chr4_3:12735754-12735773 | None:intergenic | 30.0% |
| TTTCTTCAGAGGAATAGAAA+AGG | + | chr4_3:12735768-12735787 | Msa0630720:CDS | 30.0% | |
| AGGAATAGAAAAGGATGATA+AGG | + | chr4_3:12735777-12735796 | Msa0630720:CDS | 30.0% | |
| AAAGCTACTGAAGCTATTAA+TGG | + | chr4_3:12735910-12735929 | Msa0630720:CDS | 30.0% | |
| AAGCTACTGAAGCTATTAAT+GGG | + | chr4_3:12735911-12735930 | Msa0630720:CDS | 30.0% | |
| TGATATGTTTATACCATGAG+TGG | - | chr4_3:12736002-12736021 | None:intergenic | 30.0% | |
| CATGGTATAAACATATCAAC+TGG | + | chr4_3:12736004-12736023 | Msa0630720:intron | 30.0% | |
| TGAGTTGTTAGTAGTATGAT+GGG | + | chr4_3:12736313-12736332 | Msa0630720:intron | 30.0% | |
| ATACACTAACATGGATATGA+GGG | - | chr4_3:12736404-12736423 | None:intergenic | 30.0% | |
| CAGTCAAAATGAAGAAGAAA+GGG | - | chr4_3:12736940-12736959 | None:intergenic | 30.0% | |
| ACAGTCAAAATGAAGAAGAA+AGG | - | chr4_3:12736941-12736960 | None:intergenic | 30.0% | |
| TTTGTACATGTTGTCAATAG+CGG | - | chr4_3:12737149-12737168 | None:intergenic | 30.0% | |
| !! | TGATCTATGTTTTGGACTTT+AGG | - | chr4_3:12737174-12737193 | None:intergenic | 30.0% |
| ! | TAATGCCCTTATTTCCTTAA+TGG | + | chr4_3:12737267-12737286 | Msa0630720:intron | 30.0% |
| TAGTTAGCAATGATCCATTA+AGG | - | chr4_3:12737284-12737303 | None:intergenic | 30.0% | |
| AATGGATCATTGCTAACTAA+TGG | + | chr4_3:12737285-12737304 | Msa0630720:intron | 30.0% | |
| TGTCTACAGTATTTGTACAA+TGG | - | chr4_3:12737441-12737460 | None:intergenic | 30.0% | |
| GCAATATTTAAATCTCCACA+TGG | - | chr4_3:12737660-12737679 | None:intergenic | 30.0% | |
| AAATTGCTTGTACCTAAAAC+TGG | + | chr4_3:12735721-12735740 | Msa0630720:CDS | 30.0% | |
| !! | AAGAAAAGTCTTTGTTGTTC+AGG | - | chr4_3:12735754-12735773 | None:intergenic | 30.0% |
| TTTCTTCAGAGGAATAGAAA+AGG | + | chr4_3:12735768-12735787 | Msa0630720:CDS | 30.0% | |
| AGGAATAGAAAAGGATGATA+AGG | + | chr4_3:12735777-12735796 | Msa0630720:CDS | 30.0% | |
| AAAGCTACTGAAGCTATTAA+TGG | + | chr4_3:12735910-12735929 | Msa0630720:CDS | 30.0% | |
| AAGCTACTGAAGCTATTAAT+GGG | + | chr4_3:12735911-12735930 | Msa0630720:CDS | 30.0% | |
| TGATATGTTTATACCATGAG+TGG | - | chr4_3:12736002-12736021 | None:intergenic | 30.0% | |
| CATGGTATAAACATATCAAC+TGG | + | chr4_3:12736004-12736023 | Msa0630720:intron | 30.0% | |
| TGAGTTGTTAGTAGTATGAT+GGG | + | chr4_3:12736313-12736332 | Msa0630720:intron | 30.0% | |
| ATACACTAACATGGATATGA+GGG | - | chr4_3:12736404-12736423 | None:intergenic | 30.0% | |
| CAGTCAAAATGAAGAAGAAA+GGG | - | chr4_3:12736940-12736959 | None:intergenic | 30.0% | |
| ACAGTCAAAATGAAGAAGAA+AGG | - | chr4_3:12736941-12736960 | None:intergenic | 30.0% | |
| TTTGTACATGTTGTCAATAG+CGG | - | chr4_3:12737149-12737168 | None:intergenic | 30.0% | |
| !! | TGATCTATGTTTTGGACTTT+AGG | - | chr4_3:12737174-12737193 | None:intergenic | 30.0% |
| ! | TAATGCCCTTATTTCCTTAA+TGG | + | chr4_3:12737267-12737286 | Msa0630720:intron | 30.0% |
| TAGTTAGCAATGATCCATTA+AGG | - | chr4_3:12737284-12737303 | None:intergenic | 30.0% | |
| AATGGATCATTGCTAACTAA+TGG | + | chr4_3:12737285-12737304 | Msa0630720:intron | 30.0% | |
| TGTCTACAGTATTTGTACAA+TGG | - | chr4_3:12737441-12737460 | None:intergenic | 30.0% | |
| GCAATATTTAAATCTCCACA+TGG | - | chr4_3:12737660-12737679 | None:intergenic | 30.0% | |
| ! | CAACAAAGACTTTTCTTCAG+AGG | + | chr4_3:12735757-12735776 | Msa0630720:CDS | 35.0% |
| TAGCAAAGAGAAGAAACTTG+AGG | + | chr4_3:12735861-12735880 | Msa0630720:CDS | 35.0% | |
| AGCTACTGAAGCTATTAATG+GGG | + | chr4_3:12735912-12735931 | Msa0630720:CDS | 35.0% | |
| ATATATGACTACTCCACTCA+TGG | + | chr4_3:12735986-12736005 | Msa0630720:intron | 35.0% | |
| AGTCAATTGCTGAAACTAGA+TGG | + | chr4_3:12736141-12736160 | Msa0630720:CDS | 35.0% | |
| ACTACTAACAACTCAGCTAT+TGG | - | chr4_3:12736308-12736327 | None:intergenic | 35.0% | |
| CTGAGTTGTTAGTAGTATGA+TGG | + | chr4_3:12736312-12736331 | Msa0630720:intron | 35.0% | |
| GAGTTGTTAGTAGTATGATG+GGG | + | chr4_3:12736314-12736333 | Msa0630720:intron | 35.0% | |
| ! | TTAGTAGTATGATGGGGATA+GGG | + | chr4_3:12736320-12736339 | Msa0630720:intron | 35.0% |
| ACATGGATATGAGGGATATA+AGG | - | chr4_3:12736396-12736415 | None:intergenic | 35.0% | |
| CATACACTAACATGGATATG+AGG | - | chr4_3:12736405-12736424 | None:intergenic | 35.0% | |
| AGATCAGACATACACTAACA+TGG | - | chr4_3:12736413-12736432 | None:intergenic | 35.0% | |
| TTTGCCATCAAATTTCGACT+TGG | + | chr4_3:12736549-12736568 | Msa0630720:intron | 35.0% | |
| CTAACCAAGTCGAAATTTGA+TGG | - | chr4_3:12736556-12736575 | None:intergenic | 35.0% | |
| TTTGCAGTACATTGTCAAAG+CGG | + | chr4_3:12736633-12736652 | Msa0630720:intron | 35.0% | |
| ! | TGGATACATCTCTTTTTGAC+AGG | - | chr4_3:12737404-12737423 | None:intergenic | 35.0% |
| GTCAAAAAGAGATGTATCCA+TGG | + | chr4_3:12737404-12737423 | Msa0630720:intron | 35.0% | |
| TTAAGCAGTATGTGAACAGA+TGG | - | chr4_3:12737590-12737609 | None:intergenic | 35.0% | |
| GGATATGGTAGATTCTCTAA+AGG | + | chr4_3:12737734-12737753 | Msa0630720:CDS | 35.0% | |
| AATTGGGAAACCTTTGATAC+CGG | + | chr4_3:12737810-12737829 | Msa0630720:CDS | 35.0% | |
| GTAGAAGATGATGTTGTTGA+TGG | - | chr4_3:12737858-12737877 | None:intergenic | 35.0% | |
| AAATATCTCATGATTGGGAG+CGG | + | chr4_3:12737880-12737899 | Msa0630720:CDS | 35.0% | |
| ! | CAACAAAGACTTTTCTTCAG+AGG | + | chr4_3:12735757-12735776 | Msa0630720:CDS | 35.0% |
| TAGCAAAGAGAAGAAACTTG+AGG | + | chr4_3:12735861-12735880 | Msa0630720:CDS | 35.0% | |
| AGCTACTGAAGCTATTAATG+GGG | + | chr4_3:12735912-12735931 | Msa0630720:CDS | 35.0% | |
| ATATATGACTACTCCACTCA+TGG | + | chr4_3:12735986-12736005 | Msa0630720:intron | 35.0% | |
| AGTCAATTGCTGAAACTAGA+TGG | + | chr4_3:12736141-12736160 | Msa0630720:CDS | 35.0% | |
| ACTACTAACAACTCAGCTAT+TGG | - | chr4_3:12736308-12736327 | None:intergenic | 35.0% | |
| CTGAGTTGTTAGTAGTATGA+TGG | + | chr4_3:12736312-12736331 | Msa0630720:intron | 35.0% | |
| GAGTTGTTAGTAGTATGATG+GGG | + | chr4_3:12736314-12736333 | Msa0630720:intron | 35.0% | |
| ! | TTAGTAGTATGATGGGGATA+GGG | + | chr4_3:12736320-12736339 | Msa0630720:intron | 35.0% |
| ACATGGATATGAGGGATATA+AGG | - | chr4_3:12736396-12736415 | None:intergenic | 35.0% | |
| CATACACTAACATGGATATG+AGG | - | chr4_3:12736405-12736424 | None:intergenic | 35.0% | |
| AGATCAGACATACACTAACA+TGG | - | chr4_3:12736413-12736432 | None:intergenic | 35.0% | |
| TTTGCCATCAAATTTCGACT+TGG | + | chr4_3:12736549-12736568 | Msa0630720:intron | 35.0% | |
| CTAACCAAGTCGAAATTTGA+TGG | - | chr4_3:12736556-12736575 | None:intergenic | 35.0% | |
| TTTGCAGTACATTGTCAAAG+CGG | + | chr4_3:12736633-12736652 | Msa0630720:intron | 35.0% | |
| ! | TGGATACATCTCTTTTTGAC+AGG | - | chr4_3:12737404-12737423 | None:intergenic | 35.0% |
| GTCAAAAAGAGATGTATCCA+TGG | + | chr4_3:12737404-12737423 | Msa0630720:intron | 35.0% | |
| TTAAGCAGTATGTGAACAGA+TGG | - | chr4_3:12737590-12737609 | None:intergenic | 35.0% | |
| GGATATGGTAGATTCTCTAA+AGG | + | chr4_3:12737734-12737753 | Msa0630720:CDS | 35.0% | |
| AATTGGGAAACCTTTGATAC+CGG | + | chr4_3:12737810-12737829 | Msa0630720:CDS | 35.0% | |
| GTAGAAGATGATGTTGTTGA+TGG | - | chr4_3:12737858-12737877 | None:intergenic | 35.0% | |
| AAATATCTCATGATTGGGAG+CGG | + | chr4_3:12737880-12737899 | Msa0630720:CDS | 35.0% | |
| !!! | TCAGGCTCTAAACCAGTTTT+AGG | - | chr4_3:12735736-12735755 | None:intergenic | 40.0% |
| !!! | AATTTTTTAGGTGGCTGCCT+TGG | + | chr4_3:12736050-12736069 | Msa0630720:intron | 40.0% |
| GCTGAAACTAGATGGAATTG+AGG | + | chr4_3:12736149-12736168 | Msa0630720:CDS | 40.0% | |
| AAAGTTGCAGAGAAAAGCTG+AGG | + | chr4_3:12736185-12736204 | Msa0630720:CDS | 40.0% | |
| ! | GTTAGTAGTATGATGGGGAT+AGG | + | chr4_3:12736319-12736338 | Msa0630720:intron | 40.0% |
| CAAGAACAACATTGCGACAT+TGG | - | chr4_3:12736440-12736459 | None:intergenic | 40.0% | |
| TGAAGACGATCTAGAGATCT+AGG | - | chr4_3:12736870-12736889 | None:intergenic | 40.0% | |
| ! | CAGAGAACAGAGAGATTTTG+TGG | + | chr4_3:12736979-12736998 | Msa0630720:intron | 40.0% |
| ! | AGGGCATTAAGTGTACGTTT+GGG | - | chr4_3:12737256-12737275 | None:intergenic | 40.0% |
| !! | AAGGGCATTAAGTGTACGTT+TGG | - | chr4_3:12737257-12737276 | None:intergenic | 40.0% |
| AAAGAGATGTATCCATGGAG+AGG | + | chr4_3:12737409-12737428 | Msa0630720:intron | 40.0% | |
| ! | CAGCTTTTCATTCCTTCTAC+AGG | + | chr4_3:12737689-12737708 | Msa0630720:intron | 40.0% |
| !! | GATTGCCACTTTGGCTAAAA+GGG | - | chr4_3:12737773-12737792 | None:intergenic | 40.0% |
| GGTATCAAAGGTTTCCCAAT+TGG | - | chr4_3:12737811-12737830 | None:intergenic | 40.0% | |
| ACCTTTGATACCGGAATTGA+AGG | + | chr4_3:12737819-12737838 | Msa0630720:CDS | 40.0% | |
| !!! | TCAGGCTCTAAACCAGTTTT+AGG | - | chr4_3:12735736-12735755 | None:intergenic | 40.0% |
| !!! | AATTTTTTAGGTGGCTGCCT+TGG | + | chr4_3:12736050-12736069 | Msa0630720:intron | 40.0% |
| GCTGAAACTAGATGGAATTG+AGG | + | chr4_3:12736149-12736168 | Msa0630720:CDS | 40.0% | |
| AAAGTTGCAGAGAAAAGCTG+AGG | + | chr4_3:12736185-12736204 | Msa0630720:CDS | 40.0% | |
| ! | GTTAGTAGTATGATGGGGAT+AGG | + | chr4_3:12736319-12736338 | Msa0630720:intron | 40.0% |
| CAAGAACAACATTGCGACAT+TGG | - | chr4_3:12736440-12736459 | None:intergenic | 40.0% | |
| TGAAGACGATCTAGAGATCT+AGG | - | chr4_3:12736870-12736889 | None:intergenic | 40.0% | |
| ! | CAGAGAACAGAGAGATTTTG+TGG | + | chr4_3:12736979-12736998 | Msa0630720:intron | 40.0% |
| ! | AGGGCATTAAGTGTACGTTT+GGG | - | chr4_3:12737256-12737275 | None:intergenic | 40.0% |
| !! | AAGGGCATTAAGTGTACGTT+TGG | - | chr4_3:12737257-12737276 | None:intergenic | 40.0% |
| AAAGAGATGTATCCATGGAG+AGG | + | chr4_3:12737409-12737428 | Msa0630720:intron | 40.0% | |
| ! | CAGCTTTTCATTCCTTCTAC+AGG | + | chr4_3:12737689-12737708 | Msa0630720:intron | 40.0% |
| !! | GATTGCCACTTTGGCTAAAA+GGG | - | chr4_3:12737773-12737792 | None:intergenic | 40.0% |
| GGTATCAAAGGTTTCCCAAT+TGG | - | chr4_3:12737811-12737830 | None:intergenic | 40.0% | |
| ACCTTTGATACCGGAATTGA+AGG | + | chr4_3:12737819-12737838 | Msa0630720:CDS | 40.0% | |
| TGATAAGGAGCAATTGCACC+AGG | + | chr4_3:12735792-12735811 | Msa0630720:CDS | 45.0% | |
| TATTAATGGGGTTAGAGCCG+AGG | + | chr4_3:12735924-12735943 | Msa0630720:CDS | 45.0% | |
| CTGCAACTTTGCTTCACCTT+CGG | - | chr4_3:12736175-12736194 | None:intergenic | 45.0% | |
| AACAACTCAGCTATTGGCCA+TGG | - | chr4_3:12736302-12736321 | None:intergenic | 45.0% | |
| !! | TATAAGGTTAGCCTGGCAGT+TGG | - | chr4_3:12736380-12736399 | None:intergenic | 45.0% |
| ! | TGAGGGATATAAGGTTAGCC+TGG | - | chr4_3:12736387-12736406 | None:intergenic | 45.0% |
| ACATTGTCAAAGCGGAAACG+CGG | + | chr4_3:12736641-12736660 | Msa0630720:intron | 45.0% | |
| AGGCAAATGCGGAACAATAG+CGG | - | chr4_3:12737051-12737070 | None:intergenic | 45.0% | |
| TTGTCAATAGCGGTCTAACG+CGG | - | chr4_3:12737139-12737158 | None:intergenic | 45.0% | |
| AGATGTATCCATGGAGAGGT+TGG | + | chr4_3:12737413-12737432 | Msa0630720:intron | 45.0% | |
| GAGAATCTACCATATCCACG+AGG | - | chr4_3:12737731-12737750 | None:intergenic | 45.0% | |
| ! | TCCAACCCTTTTAGCCAAAG+TGG | + | chr4_3:12737765-12737784 | Msa0630720:CDS | 45.0% |
| !! | GGATTGCCACTTTGGCTAAA+AGG | - | chr4_3:12737774-12737793 | None:intergenic | 45.0% |
| TGCCACAGGAACAACCAATT+GGG | + | chr4_3:12737794-12737813 | Msa0630720:CDS | 45.0% | |
| TTCCCAATTGGTTGTTCCTG+TGG | - | chr4_3:12737799-12737818 | None:intergenic | 45.0% | |
| GCCTTCAATTCCGGTATCAA+AGG | - | chr4_3:12737823-12737842 | None:intergenic | 45.0% | |
| TGATAAGGAGCAATTGCACC+AGG | + | chr4_3:12735792-12735811 | Msa0630720:CDS | 45.0% | |
| TATTAATGGGGTTAGAGCCG+AGG | + | chr4_3:12735924-12735943 | Msa0630720:CDS | 45.0% | |
| CTGCAACTTTGCTTCACCTT+CGG | - | chr4_3:12736175-12736194 | None:intergenic | 45.0% | |
| AACAACTCAGCTATTGGCCA+TGG | - | chr4_3:12736302-12736321 | None:intergenic | 45.0% | |
| !! | TATAAGGTTAGCCTGGCAGT+TGG | - | chr4_3:12736380-12736399 | None:intergenic | 45.0% |
| ! | TGAGGGATATAAGGTTAGCC+TGG | - | chr4_3:12736387-12736406 | None:intergenic | 45.0% |
| ACATTGTCAAAGCGGAAACG+CGG | + | chr4_3:12736641-12736660 | Msa0630720:intron | 45.0% | |
| AGGCAAATGCGGAACAATAG+CGG | - | chr4_3:12737051-12737070 | None:intergenic | 45.0% | |
| TTGTCAATAGCGGTCTAACG+CGG | - | chr4_3:12737139-12737158 | None:intergenic | 45.0% | |
| AGATGTATCCATGGAGAGGT+TGG | + | chr4_3:12737413-12737432 | Msa0630720:intron | 45.0% | |
| GAGAATCTACCATATCCACG+AGG | - | chr4_3:12737731-12737750 | None:intergenic | 45.0% | |
| ! | TCCAACCCTTTTAGCCAAAG+TGG | + | chr4_3:12737765-12737784 | Msa0630720:CDS | 45.0% |
| !! | GGATTGCCACTTTGGCTAAA+AGG | - | chr4_3:12737774-12737793 | None:intergenic | 45.0% |
| TGCCACAGGAACAACCAATT+GGG | + | chr4_3:12737794-12737813 | Msa0630720:CDS | 45.0% | |
| TTCCCAATTGGTTGTTCCTG+TGG | - | chr4_3:12737799-12737818 | None:intergenic | 45.0% | |
| GCCTTCAATTCCGGTATCAA+AGG | - | chr4_3:12737823-12737842 | None:intergenic | 45.0% | |
| !!! | ATTGATTATTATAATTTTTT+AGG | + | chr4_3:12736038-12736057 | Msa0630720:intron | 5.0% |
| !!! | ATTGATTATTATAATTTTTT+AGG | + | chr4_3:12736038-12736057 | Msa0630720:intron | 5.0% |
| AAGGAGCAATTGCACCAGGA+AGG | + | chr4_3:12735796-12735815 | Msa0630720:CDS | 50.0% | |
| AGGAGCAATTGCACCAGGAA+GGG | + | chr4_3:12735797-12735816 | Msa0630720:CDS | 50.0% | |
| ATTGCACCAGGAAGGGGTAA+AGG | + | chr4_3:12735804-12735823 | Msa0630720:CDS | 50.0% | |
| TTGCACCAGGAAGGGGTAAA+GGG | + | chr4_3:12735805-12735824 | Msa0630720:CDS | 50.0% | |
| ACTTACCCTTTACCCCTTCC+TGG | - | chr4_3:12735813-12735832 | None:intergenic | 50.0% | |
| ATCAGAGAGCTTGTCCACCT+CGG | - | chr4_3:12735944-12735963 | None:intergenic | 50.0% | |
| AGGTGGACAAGCTCTCTGAT+AGG | + | chr4_3:12735944-12735963 | Msa0630720:CDS | 50.0% | |
| GGTGGACAAGCTCTCTGATA+GGG | + | chr4_3:12735945-12735964 | Msa0630720:CDS | 50.0% | |
| ! | TGCATTGATAGCCGCTTCCA+AGG | - | chr4_3:12736070-12736089 | None:intergenic | 50.0% |
| TTGGAAGCGGCTATCAATGC+AGG | + | chr4_3:12736069-12736088 | Msa0630720:CDS | 50.0% | |
| TGGAAGCGGCTATCAATGCA+GGG | + | chr4_3:12736070-12736089 | Msa0630720:CDS | 50.0% | |
| CTAGATGGAATTGAGGCCGA+AGG | + | chr4_3:12736156-12736175 | Msa0630720:CDS | 50.0% | |
| ATCACTCTACTCCAACTGCC+AGG | + | chr4_3:12736366-12736385 | Msa0630720:intron | 50.0% | |
| GGCAAATGCGGAACAATAGC+GGG | - | chr4_3:12737050-12737069 | None:intergenic | 50.0% | |
| CAATGGATCCAACCTCTCCA+TGG | - | chr4_3:12737424-12737443 | None:intergenic | 50.0% | |
| GGCTAAGATGTGATGCCATG+TGG | + | chr4_3:12737642-12737661 | Msa0630720:intron | 50.0% | |
| ! | GCCACTTTGGCTAAAAGGGT+TGG | - | chr4_3:12737769-12737788 | None:intergenic | 50.0% |
| CAATTGGTTGTTCCTGTGGC+AGG | - | chr4_3:12737795-12737814 | None:intergenic | 50.0% | |
| CTGCCACAGGAACAACCAAT+TGG | + | chr4_3:12737793-12737812 | Msa0630720:CDS | 50.0% | |
| GTCGTTCGAGCCTTCAATTC+CGG | - | chr4_3:12737832-12737851 | None:intergenic | 50.0% | |
| AAGGAGCAATTGCACCAGGA+AGG | + | chr4_3:12735796-12735815 | Msa0630720:CDS | 50.0% | |
| AGGAGCAATTGCACCAGGAA+GGG | + | chr4_3:12735797-12735816 | Msa0630720:CDS | 50.0% | |
| ATTGCACCAGGAAGGGGTAA+AGG | + | chr4_3:12735804-12735823 | Msa0630720:CDS | 50.0% | |
| TTGCACCAGGAAGGGGTAAA+GGG | + | chr4_3:12735805-12735824 | Msa0630720:CDS | 50.0% | |
| ACTTACCCTTTACCCCTTCC+TGG | - | chr4_3:12735813-12735832 | None:intergenic | 50.0% | |
| ATCAGAGAGCTTGTCCACCT+CGG | - | chr4_3:12735944-12735963 | None:intergenic | 50.0% | |
| AGGTGGACAAGCTCTCTGAT+AGG | + | chr4_3:12735944-12735963 | Msa0630720:CDS | 50.0% | |
| GGTGGACAAGCTCTCTGATA+GGG | + | chr4_3:12735945-12735964 | Msa0630720:CDS | 50.0% | |
| ! | TGCATTGATAGCCGCTTCCA+AGG | - | chr4_3:12736070-12736089 | None:intergenic | 50.0% |
| TTGGAAGCGGCTATCAATGC+AGG | + | chr4_3:12736069-12736088 | Msa0630720:CDS | 50.0% | |
| TGGAAGCGGCTATCAATGCA+GGG | + | chr4_3:12736070-12736089 | Msa0630720:CDS | 50.0% | |
| CTAGATGGAATTGAGGCCGA+AGG | + | chr4_3:12736156-12736175 | Msa0630720:CDS | 50.0% | |
| ATCACTCTACTCCAACTGCC+AGG | + | chr4_3:12736366-12736385 | Msa0630720:intron | 50.0% | |
| GGCAAATGCGGAACAATAGC+GGG | - | chr4_3:12737050-12737069 | None:intergenic | 50.0% | |
| CAATGGATCCAACCTCTCCA+TGG | - | chr4_3:12737424-12737443 | None:intergenic | 50.0% | |
| GGCTAAGATGTGATGCCATG+TGG | + | chr4_3:12737642-12737661 | Msa0630720:intron | 50.0% | |
| ! | GCCACTTTGGCTAAAAGGGT+TGG | - | chr4_3:12737769-12737788 | None:intergenic | 50.0% |
| CAATTGGTTGTTCCTGTGGC+AGG | - | chr4_3:12737795-12737814 | None:intergenic | 50.0% | |
| CTGCCACAGGAACAACCAAT+TGG | + | chr4_3:12737793-12737812 | Msa0630720:CDS | 50.0% | |
| GTCGTTCGAGCCTTCAATTC+CGG | - | chr4_3:12737832-12737851 | None:intergenic | 50.0% | |
| GGAGCAATTGCACCAGGAAG+GGG | + | chr4_3:12735798-12735817 | Msa0630720:CDS | 55.0% | |
| TAATGGGGTTAGAGCCGAGG+TGG | + | chr4_3:12735927-12735946 | Msa0630720:CDS | 55.0% | |
| TTAGGTGGCTGCCTTGGAAG+CGG | + | chr4_3:12736056-12736075 | Msa0630720:intron | 55.0% | |
| GGCCACCCCAAAAATTGACG+CGG | + | chr4_3:12736672-12736691 | Msa0630720:intron | 55.0% | |
| ! | ACCGCGCCGCGTCAATTTTT+GGG | - | chr4_3:12736681-12736700 | None:intergenic | 55.0% |
| ! | TACCGCGCCGCGTCAATTTT+TGG | - | chr4_3:12736682-12736701 | None:intergenic | 55.0% |
| ACGGGCGCTATTACATGACG+CGG | + | chr4_3:12736714-12736733 | Msa0630720:intron | 55.0% | |
| GGTCAACGCGGGTAAAAAGC+GGG | - | chr4_3:12737029-12737048 | None:intergenic | 55.0% | |
| GGGTCAACGCGGGTAAAAAG+CGG | - | chr4_3:12737030-12737049 | None:intergenic | 55.0% | |
| !! | GAACAATAGCGGGTCAACGC+GGG | - | chr4_3:12737040-12737059 | None:intergenic | 55.0% |
| !! | GGAACAATAGCGGGTCAACG+CGG | - | chr4_3:12737041-12737060 | None:intergenic | 55.0% |
| AGTCGCGCGTTAGGCAAATG+CGG | - | chr4_3:12737062-12737081 | None:intergenic | 55.0% | |
| CATTTGCCTAACGCGCGACT+CGG | + | chr4_3:12737062-12737081 | Msa0630720:intron | 55.0% | |
| ! | CTGTGGCAGGATTGCCACTT+TGG | - | chr4_3:12737782-12737801 | None:intergenic | 55.0% |
| CAAAGTGGCAATCCTGCCAC+AGG | + | chr4_3:12737780-12737799 | Msa0630720:CDS | 55.0% | |
| GGAGCAATTGCACCAGGAAG+GGG | + | chr4_3:12735798-12735817 | Msa0630720:CDS | 55.0% | |
| TAATGGGGTTAGAGCCGAGG+TGG | + | chr4_3:12735927-12735946 | Msa0630720:CDS | 55.0% | |
| TTAGGTGGCTGCCTTGGAAG+CGG | + | chr4_3:12736056-12736075 | Msa0630720:intron | 55.0% | |
| GGCCACCCCAAAAATTGACG+CGG | + | chr4_3:12736672-12736691 | Msa0630720:intron | 55.0% | |
| ! | ACCGCGCCGCGTCAATTTTT+GGG | - | chr4_3:12736681-12736700 | None:intergenic | 55.0% |
| ! | TACCGCGCCGCGTCAATTTT+TGG | - | chr4_3:12736682-12736701 | None:intergenic | 55.0% |
| ACGGGCGCTATTACATGACG+CGG | + | chr4_3:12736714-12736733 | Msa0630720:intron | 55.0% | |
| GGTCAACGCGGGTAAAAAGC+GGG | - | chr4_3:12737029-12737048 | None:intergenic | 55.0% | |
| GGGTCAACGCGGGTAAAAAG+CGG | - | chr4_3:12737030-12737049 | None:intergenic | 55.0% | |
| !! | GAACAATAGCGGGTCAACGC+GGG | - | chr4_3:12737040-12737059 | None:intergenic | 55.0% |
| !! | GGAACAATAGCGGGTCAACG+CGG | - | chr4_3:12737041-12737060 | None:intergenic | 55.0% |
| AGTCGCGCGTTAGGCAAATG+CGG | - | chr4_3:12737062-12737081 | None:intergenic | 55.0% | |
| CATTTGCCTAACGCGCGACT+CGG | + | chr4_3:12737062-12737081 | Msa0630720:intron | 55.0% | |
| ! | CTGTGGCAGGATTGCCACTT+TGG | - | chr4_3:12737782-12737801 | None:intergenic | 55.0% |
| CAAAGTGGCAATCCTGCCAC+AGG | + | chr4_3:12737780-12737799 | Msa0630720:CDS | 55.0% | |
| !! | CGCCGCGTCAATTTTTGGGG+TGG | - | chr4_3:12736677-12736696 | None:intergenic | 60.0% |
| ! | CCGCGCCGCGTCAATTTTTG+GGG | - | chr4_3:12736680-12736699 | None:intergenic | 60.0% |
| CCCCAAAAATTGACGCGGCG+CGG | + | chr4_3:12736677-12736696 | Msa0630720:intron | 60.0% | |
| AATTGACGCGGCGCGGTAAG+CGG | + | chr4_3:12736684-12736703 | Msa0630720:intron | 60.0% | |
| GCACACGACGCACCTGTAGA+AGG | - | chr4_3:12737704-12737723 | None:intergenic | 60.0% | |
| TCTACAGGTGCGTCGTGTGC+AGG | + | chr4_3:12737704-12737723 | Msa0630720:intron | 60.0% | |
| CTACAGGTGCGTCGTGTGCA+GGG | + | chr4_3:12737705-12737724 | Msa0630720:intron | 60.0% | |
| TGTGCAGGGCCTCGTGGATA+TGG | + | chr4_3:12737719-12737738 | Msa0630720:CDS | 60.0% | |
| !! | CGCCGCGTCAATTTTTGGGG+TGG | - | chr4_3:12736677-12736696 | None:intergenic | 60.0% |
| ! | CCGCGCCGCGTCAATTTTTG+GGG | - | chr4_3:12736680-12736699 | None:intergenic | 60.0% |
| CCCCAAAAATTGACGCGGCG+CGG | + | chr4_3:12736677-12736696 | Msa0630720:intron | 60.0% | |
| AATTGACGCGGCGCGGTAAG+CGG | + | chr4_3:12736684-12736703 | Msa0630720:intron | 60.0% | |
| GCACACGACGCACCTGTAGA+AGG | - | chr4_3:12737704-12737723 | None:intergenic | 60.0% | |
| TCTACAGGTGCGTCGTGTGC+AGG | + | chr4_3:12737704-12737723 | Msa0630720:intron | 60.0% | |
| CTACAGGTGCGTCGTGTGCA+GGG | + | chr4_3:12737705-12737724 | Msa0630720:intron | 60.0% | |
| TGTGCAGGGCCTCGTGGATA+TGG | + | chr4_3:12737719-12737738 | Msa0630720:CDS | 60.0% | |
| GTCAAAGCGGAAACGCGGCG+CGG | + | chr4_3:12736646-12736665 | Msa0630720:intron | 65.0% | |
| ATTGACGCGGCGCGGTAAGC+GGG | + | chr4_3:12736685-12736704 | Msa0630720:intron | 65.0% | |
| GTCAAAGCGGAAACGCGGCG+CGG | + | chr4_3:12736646-12736665 | Msa0630720:intron | 65.0% | |
| ATTGACGCGGCGCGGTAAGC+GGG | + | chr4_3:12736685-12736704 | Msa0630720:intron | 65.0% | |
| ACGCGACCGAGTCGCGCGTT+AGG | - | chr4_3:12737071-12737090 | None:intergenic | 70.0% | |
| CGGTCGCGTTCTGACGCGCT+AGG | + | chr4_3:12737082-12737101 | Msa0630720:intron | 70.0% | |
| GGTCTAACGCGGCGCGATCG+CGG | - | chr4_3:12737128-12737147 | None:intergenic | 70.0% | |
| ACGCGACCGAGTCGCGCGTT+AGG | - | chr4_3:12737071-12737090 | None:intergenic | 70.0% | |
| CGGTCGCGTTCTGACGCGCT+AGG | + | chr4_3:12737082-12737101 | Msa0630720:intron | 70.0% | |
| GGTCTAACGCGGCGCGATCG+CGG | - | chr4_3:12737128-12737147 | None:intergenic | 70.0% | |
| CGCGGTAAGCGGGCGCGACA+CGG | + | chr4_3:12736695-12736714 | Msa0630720:intron | 75.0% | |
| GCGGTAAGCGGGCGCGACAC+GGG | + | chr4_3:12736696-12736715 | Msa0630720:intron | 75.0% | |
| GCGTCGTGTGCAGGGCCTCG+TGG | + | chr4_3:12737713-12737732 | Msa0630720:CDS | 75.0% | |
| CGCGGTAAGCGGGCGCGACA+CGG | + | chr4_3:12736695-12736714 | Msa0630720:intron | 75.0% | |
| GCGGTAAGCGGGCGCGACAC+GGG | + | chr4_3:12736696-12736715 | Msa0630720:intron | 75.0% | |
| GCGTCGTGTGCAGGGCCTCG+TGG | + | chr4_3:12737713-12737732 | Msa0630720:CDS | 75.0% | |
| ! | AGCGGAAACGCGGCGCGGCG+CGG | + | chr4_3:12736651-12736670 | Msa0630720:intron | 80.0% |
| ! | AACGCGGCGCGATCGCGGCG+CGG | - | chr4_3:12737123-12737142 | None:intergenic | 80.0% |
| ! | AGCGGAAACGCGGCGCGGCG+CGG | + | chr4_3:12736651-12736670 | Msa0630720:intron | 80.0% |
| ! | AACGCGGCGCGATCGCGGCG+CGG | - | chr4_3:12737123-12737142 | None:intergenic | 80.0% |
| ! | GGCGCGATCGCGGCGCGGAG+CGG | - | chr4_3:12737118-12737137 | None:intergenic | 85.0% |
| ! | GGCGCGATCGCGGCGCGGAG+CGG | - | chr4_3:12737118-12737137 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 12735688 | 12737911 | 12735688 | ID=Msa0630720;Name=Msa0630720 |
| chr4_3 | mRNA | 12735688 | 12737911 | 12735688 | ID=Msa0630720-mRNA-1;Parent=Msa0630720;Name=Msa0630720-mRNA-1;_AED=0.07;_eAED=0.08;_QI=0|0|0|1|1|1|3|0|208 |
| chr4_3 | exon | 12735688 | 12735966 | 12735688 | ID=Msa0630720-mRNA-1:exon:3729;Parent=Msa0630720-mRNA-1 |
| chr4_3 | exon | 12736060 | 12736206 | 12736060 | ID=Msa0630720-mRNA-1:exon:3730;Parent=Msa0630720-mRNA-1 |
| chr4_3 | exon | 12737711 | 12737911 | 12737711 | ID=Msa0630720-mRNA-1:exon:3731;Parent=Msa0630720-mRNA-1 |
| chr4_3 | CDS | 12735688 | 12735966 | 12735688 | ID=Msa0630720-mRNA-1:cds;Parent=Msa0630720-mRNA-1 |
| chr4_3 | CDS | 12736060 | 12736206 | 12736060 | ID=Msa0630720-mRNA-1:cds;Parent=Msa0630720-mRNA-1 |
| chr4_3 | CDS | 12737711 | 12737911 | 12737711 | ID=Msa0630720-mRNA-1:cds;Parent=Msa0630720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
