AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0526890


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526890 MtrunA17_Chr7g0270991 93.385 257 11 2 1 252 6 261 2.51e-177 488
Msa0526890 MtrunA17_Chr1g0193711 68.217 258 69 7 1 252 1 251 1.34e-110 318
Msa0526890 MtrunA17_Chr1g0213971 52.344 256 86 6 3 250 16 243 9.36e-83 248
Msa0526890 MtrunA17_Chr3g0104751 58.696 184 59 4 83 250 21 203 5.80e-68 208
Msa0526890 MtrunA17_Chr3g0113441 60.234 171 55 3 90 248 62 231 7.66e-65 201
Msa0526890 MtrunA17_Chr4g0038431 56.140 171 62 3 90 248 2 171 1.44e-61 191
Msa0526890 MtrunA17_Chr3g0145501 55.556 171 63 3 93 251 13 182 1.88e-59 186
Msa0526890 MtrunA17_Chr7g0274841 62.329 146 43 2 93 226 5 150 2.83e-59 185
Msa0526890 MtrunA17_Chr8g0353571 55.152 165 63 2 95 248 21 185 8.98e-58 182
Msa0526890 MtrunA17_Chr4g0045321 52.047 171 69 2 92 249 4 174 1.11e-53 177
Msa0526890 MtrunA17_Chr8g0374621 52.071 169 68 2 93 248 5 173 3.94e-53 176
Msa0526890 MtrunA17_Chr7g0260441 54.762 168 62 3 94 248 9 175 2.94e-52 179
Msa0526890 MtrunA17_Chr4g0037281 46.561 189 87 4 74 249 29 216 1.01e-50 165
Msa0526890 MtrunA17_Chr2g0321111 54.110 146 61 4 104 245 469 612 1.96e-42 152
Msa0526890 MtrunA17_Chr7g0266721 50.694 144 65 4 104 243 17 158 2.34e-39 134
Msa0526890 MtrunA17_Chr3g0138061 40.741 189 86 4 83 252 1 182 1.72e-35 134
Msa0526890 MtrunA17_Chr8g0351571 49.650 143 66 4 104 242 8 148 3.08e-32 115
Msa0526890 MtrunA17_Chr1g0149061 40.984 183 87 5 86 252 1 178 1.19e-31 122
Msa0526890 MtrunA17_Chr5g0401141 46.099 141 70 4 106 242 354 492 3.76e-28 112
Msa0526890 MtrunA17_Chr3g0122871 66.667 60 20 0 172 231 55 114 1.43e-25 97.4
Msa0526890 MtrunA17_Chr2g0288371 42.568 148 73 7 106 245 22 165 1.76e-20 90.1
Msa0526890 MtrunA17_Chr6g0484281 38.462 130 68 4 104 222 8 136 4.14e-17 80.5
Msa0526890 MtrunA17_Chr8g0357591 39.231 130 67 5 104 222 8 136 5.95e-16 77.0
Msa0526890 MtrunA17_Chr1g0199071 33.557 149 81 6 104 245 87 224 1.92e-14 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0526890 AT3G62030.3 58.527 258 100 2 1 251 1 258 6.29e-103 300
Msa0526890 AT3G62030.1 58.301 259 100 2 1 251 1 259 1.56e-102 298
Msa0526890 AT3G62030.2 60.474 253 67 5 31 252 63 313 3.60e-99 292
Msa0526890 AT5G13120.2 59.162 191 70 2 68 250 62 252 4.80e-80 241
Msa0526890 AT5G13120.1 59.162 191 70 2 68 250 66 256 6.02e-80 241
Msa0526890 AT5G58710.1 58.289 187 61 4 76 250 23 204 1.72e-68 210
Msa0526890 AT2G29960.1 58.289 187 65 3 76 250 16 201 2.34e-68 210
Msa0526890 AT2G29960.3 58.289 187 65 3 76 250 16 201 2.34e-68 210
Msa0526890 AT2G21130.1 58.333 168 57 3 93 248 6 172 4.04e-63 195
Msa0526890 AT3G55920.1 52.239 201 73 4 72 250 29 228 2.31e-62 195
Msa0526890 AT4G38740.1 57.143 168 59 3 93 248 5 171 1.42e-61 191
Msa0526890 AT2G16600.1 55.882 170 58 4 93 248 6 172 4.18e-61 190
Msa0526890 AT3G56070.1 57.738 168 58 3 93 248 5 171 5.18e-61 190
Msa0526890 AT3G56070.2 57.738 168 58 3 93 248 5 171 5.18e-61 190
Msa0526890 AT2G29960.2 54.011 187 63 4 76 250 16 191 3.48e-59 186
Msa0526890 AT2G15790.1 53.216 171 67 2 92 249 4 174 1.25e-54 180
Msa0526890 AT2G38730.1 53.333 165 66 2 95 248 35 199 1.56e-54 174
Msa0526890 AT4G34870.1 52.023 173 60 4 93 248 5 171 5.36e-54 172
Msa0526890 AT3G63400.2 52.571 175 69 3 86 247 1 174 7.72e-53 176
Msa0526890 AT4G34960.1 49.714 175 76 2 89 251 44 218 8.80e-52 168
Msa0526890 AT3G63400.3 52.571 175 69 3 86 247 1 174 1.57e-51 176
Msa0526890 AT3G63400.4 52.571 175 69 3 86 247 1 174 1.57e-51 176
Msa0526890 AT3G63400.1 52.571 175 69 3 86 247 1 174 1.57e-51 176
Msa0526890 AT2G16600.2 51.899 158 61 3 93 248 6 150 1.56e-50 162
Msa0526890 AT3G44600.1 54.795 146 60 4 104 245 483 626 1.20e-41 150
Msa0526890 AT4G34960.2 53.125 128 48 2 89 204 44 171 5.57e-40 136
Msa0526890 AT2G36130.1 50.000 144 66 4 104 243 17 158 3.75e-39 134
Msa0526890 AT1G01940.1 48.252 143 68 4 104 242 8 148 2.03e-32 116
Msa0526890 AT5G67530.1 44.366 142 73 4 106 243 353 492 6.88e-28 112
Msa0526890 AT4G32420.1 40.223 179 85 5 86 247 1 174 3.99e-27 110
Msa0526890 AT4G32420.5 40.223 179 85 5 86 247 1 174 3.99e-27 110
Msa0526890 AT4G32420.3 40.223 179 85 5 86 247 1 174 3.99e-27 110
Msa0526890 AT4G32420.6 40.223 179 85 5 86 247 1 174 3.99e-27 110
Msa0526890 AT4G32420.4 41.558 154 77 2 86 226 1 154 6.77e-27 109
Msa0526890 AT3G22920.1 40.116 172 78 8 93 248 5 167 8.56e-27 103
Msa0526890 AT4G33060.1 43.262 141 72 6 106 240 22 160 2.91e-23 98.6
Msa0526890 AT1G53720.2 37.333 150 82 5 104 242 8 156 4.59e-18 82.8
Msa0526890 AT1G53720.1 37.333 150 82 5 104 242 8 156 1.09e-17 82.4
Msa0526890 AT2G47320.1 30.822 146 93 4 106 248 87 227 3.57e-13 67.4

Find 72 sgRNAs with CRISPR-Local

Find 153 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACATGCAAATCATATAAT+TGG 0.143786 3_4:+81033166 None:intergenic
ATCTTTGGGCAGAATCGTTT+TGG 0.218231 3_4:-81034561 Msa0526890:CDS
GCATAAGTATCAACCATCTA+TGG 0.238764 3_4:+81033427 None:intergenic
AATTGACTACCATTGGTATT+AGG 0.256008 3_4:+81033884 None:intergenic
AATCAAAGAATTCATGATTC+AGG 0.260889 3_4:-81034336 Msa0526890:CDS
TAGCCAAGATGTGTTGTCTA+TGG 0.302130 3_4:-81035539 Msa0526890:CDS
ACCTTTGACTCAAGAAGCTT+TGG 0.335511 3_4:+81035749 None:intergenic
AACATGCAAATCATATAATT+GGG 0.349416 3_4:+81033167 None:intergenic
TCACATACCGTGTCACAAAT+TGG 0.359007 3_4:-81035508 Msa0526890:CDS
CTGCAGAATGGATTGTCATT+TGG 0.361297 3_4:-81033310 Msa0526890:three_prime_UTR
GACAATCGACATGTCGTGTT+TGG 0.370445 3_4:-81033557 Msa0526890:CDS
CACCTAACTGCAACAAGAAA+TGG 0.380372 3_4:+81035715 None:intergenic
CTCAAGAAGCTTTGGTTGGT+TGG 0.392775 3_4:+81035757 None:intergenic
ATCGGTGGAGCTAGTATCTA+TGG 0.397379 3_4:-81034126 Msa0526890:CDS
GAAACATTTGGTAGTCACTT+TGG 0.413346 3_4:+81034607 None:intergenic
TAAAATCACATGTTGCTTTG+AGG 0.423621 3_4:-81035465 Msa0526890:CDS
TTCCATTGGCTGCAGGGAAT+CGG 0.423673 3_4:-81034144 Msa0526890:intron
TGCGGAGAACTGCCCATAGA+TGG 0.424005 3_4:-81033440 Msa0526890:CDS
GTGTTTGGACATGTTATTGA+TGG 0.424405 3_4:-81033542 Msa0526890:CDS
TGTTTCTTTGACGTAGAAGC+TGG 0.427261 3_4:-81034590 Msa0526890:CDS
ATCAAAGAATTCATGATTCA+GGG 0.448304 3_4:-81034335 Msa0526890:CDS
TGTGAGGACACTTGAGTCTC+AGG 0.450710 3_4:-81033510 Msa0526890:CDS
TTCTACGTCAAAGAAACATT+TGG 0.450882 3_4:+81034595 None:intergenic
AACCATTTCTTGTTGCAGTT+AGG 0.451429 3_4:-81035717 Msa0526890:five_prime_UTR
GAACCATAGACAACACATCT+TGG 0.462350 3_4:+81035536 None:intergenic
TAATCTTGTGCAGGAGAGAA+AGG 0.477763 3_4:-81034392 Msa0526890:intron
TTCTTTGATTATACGATGGA+AGG 0.485601 3_4:+81034349 None:intergenic
TGAAAATGAGAAAGTGGGTT+GGG 0.490663 3_4:+81035656 None:intergenic
TTCTTGTTGCAGTTAGGTGA+TGG 0.492720 3_4:-81035711 Msa0526890:exon
GCAGTGAAGCATGTTGGTCC+TGG 0.495639 3_4:-81033932 Msa0526890:intron
CAAGATCAATTAGATATAGT+AGG 0.497529 3_4:-81035417 Msa0526890:CDS
GAGTGAAAATTGTACTCAAA+CGG 0.500982 3_4:+81033385 None:intergenic
AAACTTGCTAACATGATCAC+TGG 0.501624 3_4:+81033349 None:intergenic
TGGACATGTTATTGATGGAA+TGG 0.518793 3_4:-81033537 Msa0526890:CDS
ACCAAAGCTTCTTGAGTCAA+AGG 0.519131 3_4:-81035750 Msa0526890:five_prime_UTR
GTTTCTTTGACGTAGAAGCT+GGG 0.521245 3_4:-81034589 Msa0526890:CDS
TATCATCGGTTGCTGCAGAA+TGG 0.521965 3_4:-81033322 Msa0526890:three_prime_UTR
TTGACTCAAGAAGCTTTGGT+TGG 0.534342 3_4:+81035753 None:intergenic
ACTACCATTGGTATTAGGAC+CGG 0.552266 3_4:+81033889 None:intergenic
CAAACCTGAAAATGAGAAAG+TGG 0.556937 3_4:+81035650 None:intergenic
TAGCAAGTTTGAATTATCAT+CGG 0.557171 3_4:-81033336 Msa0526890:three_prime_UTR
CATTGGCTGCAGGGAATCGG+TGG 0.561137 3_4:-81034141 Msa0526890:intron
TAGATGGTTGATACTTATGC+GGG 0.564926 3_4:-81033424 Msa0526890:exon
TTTGCCATGCTCAAAACTCC+AGG 0.566786 3_4:+81033914 None:intergenic
ATGTGTTGTCTATGGTTCAA+AGG 0.570074 3_4:-81035531 Msa0526890:CDS
AGATTGAAGCAGTTGAGTTG+AGG 0.584496 3_4:+81035679 None:intergenic
CTGAAAATGAGAAAGTGGGT+TGG 0.587157 3_4:+81035655 None:intergenic
CCTTGCAGAATCTTTAATTG+CGG 0.590725 3_4:-81033458 Msa0526890:CDS
AACTTGCTAACATGATCACT+GGG 0.600066 3_4:+81033350 None:intergenic
TGTGCAGGAGAGAAAGGATA+CGG 0.600737 3_4:-81034386 Msa0526890:intron
CATAAGTATCAACCATCTAT+GGG 0.602479 3_4:+81033428 None:intergenic
CCGCAATTAAAGATTCTGCA+AGG 0.603205 3_4:+81033458 None:intergenic
CTTCTTGCAGTGAAGCATGT+TGG 0.605444 3_4:-81033938 Msa0526890:intron
ACATGCAAATCATATAATTG+GGG 0.608394 3_4:+81033168 None:intergenic
ACTGTAACCAATTTGTGACA+CGG 0.612206 3_4:+81035501 None:intergenic
TGAATTCTTTGATTATACGA+TGG 0.620498 3_4:+81034345 None:intergenic
GAGAAAGGATACGGTTACAA+AGG 0.621131 3_4:-81034377 Msa0526890:CDS
TTTCTTTGACGTAGAAGCTG+GGG 0.628424 3_4:-81034588 Msa0526890:CDS
TTCTTTGACGTAGAAGCTGG+GGG 0.630560 3_4:-81034587 Msa0526890:CDS
TTGAGTCTCAGGAAACAAGC+AGG 0.634425 3_4:-81033499 Msa0526890:CDS
CAGGGAGGAGACTTCACTGA+GGG 0.643258 3_4:-81034317 Msa0526890:CDS
CTAAACATGGACTAGTCATG+AGG 0.657365 3_4:+81033140 None:intergenic
GCATATGATCGCAGACTCCG+TGG 0.659220 3_4:-81033583 Msa0526890:intron
AATGCCGGTCCTAATACCAA+TGG 0.661326 3_4:-81033893 Msa0526890:CDS
ATAGATGGTTGATACTTATG+CGG 0.663955 3_4:-81033425 Msa0526890:exon
TTGATGGAATGGATGTTGTG+AGG 0.678873 3_4:-81033526 Msa0526890:CDS
GAAACTTTAGAAACTAAACA+TGG 0.682882 3_4:+81033127 None:intergenic
AAACCTGAAAATGAGAAAGT+GGG 0.705584 3_4:+81035651 None:intergenic
TCTTGCTCCAAATTGTTGCG+TGG 0.716266 3_4:+81035435 None:intergenic
ACATGTCGATTGTCTAACCA+CGG 0.718954 3_4:+81033566 None:intergenic
AAAGAATTCATGATTCAGGG+AGG 0.735053 3_4:-81034332 Msa0526890:CDS
TCAGGGAGGAGACTTCACTG+AGG 0.753671 3_4:-81034318 Msa0526890:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCAATATATATTATTGA+CGG + chr3_4:81033758-81033777 None:intergenic 10.0%
!!! AAATGAAAAACTTACATTTT+CGG + chr3_4:81033544-81033563 None:intergenic 15.0%
!!! AAAATGTAAGTTTTTCATTT+TGG - chr3_4:81033544-81033563 Msa0526890:CDS 15.0%
!! ATAAAAAAATCATTTCAGAT+AGG + chr3_4:81034087-81034106 None:intergenic 15.0%
!!! GTGTTGAAAATAATTTTTTT+AGG + chr3_4:81034953-81034972 None:intergenic 15.0%
!! GTTATATTTGAATATTAGAT+TGG - chr3_4:81035233-81035252 Msa0526890:intron 15.0%
!! GATTAATGAACAAAAACAAT+TGG + chr3_4:81033315-81033334 None:intergenic 20.0%
!!! AATGTTTGTTTGTTTTTTTC+AGG - chr3_4:81033341-81033360 Msa0526890:three_prime_UTR 20.0%
!!! ATGTTTGTTTGTTTTTTTCA+GGG - chr3_4:81033342-81033361 Msa0526890:three_prime_UTR 20.0%
!!! AAATGAGTAAATAGTCATTT+TGG - chr3_4:81033700-81033719 Msa0526890:intron 20.0%
!!! TACTTACTACTGTAATTTTA+AGG - chr3_4:81034022-81034041 Msa0526890:intron 20.0%
!!! ATGGTTTTATTACTGTTATT+AGG - chr3_4:81034265-81034284 Msa0526890:intron 20.0%
!!! TAACATAGCATTTTAAAGTT+TGG - chr3_4:81034489-81034508 Msa0526890:intron 20.0%
!! CATAGAAACAAATATAACAA+AGG + chr3_4:81034667-81034686 None:intergenic 20.0%
!!! TTAATTACACTGTTTTAAAC+TGG + chr3_4:81034927-81034946 None:intergenic 20.0%
!! AATAAAAAATTGACTACCAT+TGG + chr3_4:81035036-81035055 None:intergenic 20.0%
!!! ATTTTTTATTTGCACTGTTA+AGG - chr3_4:81035046-81035065 Msa0526890:intron 20.0%
!!! AGTTTTGAAGTAAAAATATC+AGG + chr3_4:81035089-81035108 None:intergenic 20.0%
!! AACATGCAAATCATATAATT+GGG + chr3_4:81035746-81035765 None:intergenic 20.0%
!! AAACATGCAAATCATATAAT+TGG + chr3_4:81035747-81035766 None:intergenic 20.0%
! CAAGATCAATTAGATATAGT+AGG - chr3_4:81033493-81033512 Msa0526890:CDS 25.0%
!!! GTTTTAAAACGAGATTGTTA+TGG + chr3_4:81033662-81033681 None:intergenic 25.0%
! GTCCATAAAATTACTAACAA+AGG - chr3_4:81033885-81033904 Msa0526890:CDS 25.0%
!! GTCCTTTGTTAGTAATTTTA+TGG + chr3_4:81033890-81033909 None:intergenic 25.0%
! TTGTTAATCACAAAAATCGT+TGG - chr3_4:81034185-81034204 Msa0526890:intron 25.0%
! TGAATTCTTTGATTATACGA+TGG + chr3_4:81034568-81034587 None:intergenic 25.0%
! AATCAAAGAATTCATGATTC+AGG - chr3_4:81034574-81034593 Msa0526890:CDS 25.0%
! ATCAAAGAATTCATGATTCA+GGG - chr3_4:81034575-81034594 Msa0526890:CDS 25.0%
!!! TGGTTTTTAAAATTTCTCCT+TGG - chr3_4:81034893-81034912 Msa0526890:intron 25.0%
! GCTTAAAAATCAATAATCAC+TGG - chr3_4:81035150-81035169 Msa0526890:intron 25.0%
! AAAAATCAATAATCACTGGT+TGG - chr3_4:81035154-81035173 Msa0526890:intron 25.0%
! TGGTTGTTTATTTACATGAT+TGG - chr3_4:81035174-81035193 Msa0526890:intron 25.0%
! CTTAGCATATACAGAAAATA+AGG + chr3_4:81035267-81035286 None:intergenic 25.0%
! TAGCAAGTTTGAATTATCAT+CGG - chr3_4:81035574-81035593 Msa0526890:intron 25.0%
! ACATGCAAATCATATAATTG+GGG + chr3_4:81035745-81035764 None:intergenic 25.0%
!! GAAACTTTAGAAACTAAACA+TGG + chr3_4:81035786-81035805 None:intergenic 25.0%
AAACCTGAAAATGAGAAAGT+GGG + chr3_4:81033262-81033281 None:intergenic 30.0%
!!! ATTTTCAGGTTTGCACAAAT+GGG - chr3_4:81033270-81033289 Msa0526890:three_prime_UTR 30.0%
!! TAAAATCACATGTTGCTTTG+AGG - chr3_4:81033445-81033464 Msa0526890:CDS 30.0%
AAGGATGTTATGTTATGACA+TGG - chr3_4:81033606-81033625 Msa0526890:intron 30.0%
AGGATGTTATGTTATGACAT+GGG - chr3_4:81033607-81033626 Msa0526890:intron 30.0%
! TTTTGGTCCTTAAATGTTTG+AGG - chr3_4:81033717-81033736 Msa0526890:intron 30.0%
TTTGGTCCTTAAATGTTTGA+GGG - chr3_4:81033718-81033737 Msa0526890:intron 30.0%
GTATCTTTCGTTTGTAACAT+TGG - chr3_4:81033792-81033811 Msa0526890:intron 30.0%
TACTAACAAAGGACACATTT+AGG - chr3_4:81033896-81033915 Msa0526890:CDS 30.0%
ACTAACAAAGGACACATTTA+GGG - chr3_4:81033897-81033916 Msa0526890:CDS 30.0%
GGACGTTTATTATCTTTACA+TGG - chr3_4:81034246-81034265 Msa0526890:intron 30.0%
TTCTACGTCAAAGAAACATT+TGG + chr3_4:81034318-81034337 None:intergenic 30.0%
! CGGAAATTTTCAACTGTTTT+AGG + chr3_4:81034395-81034414 None:intergenic 30.0%
! ATCAAAGGTGCAGAAAAATA+TGG + chr3_4:81034440-81034459 None:intergenic 30.0%
CACATTCAAAAAAGTAATCC+AGG + chr3_4:81034469-81034488 None:intergenic 30.0%
TTCTTTGATTATACGATGGA+AGG + chr3_4:81034564-81034583 None:intergenic 30.0%
CCTTCATTGAAACAAATACA+TGG + chr3_4:81034716-81034735 None:intergenic 30.0%
CCATGTATTTGTTTCAATGA+AGG - chr3_4:81034713-81034732 Msa0526890:intron 30.0%
!! CTAGATTTTTAGATAGTGCT+TGG - chr3_4:81034873-81034892 Msa0526890:intron 30.0%
TTAAACTGGAATTAAAGCCA+AGG + chr3_4:81034913-81034932 None:intergenic 30.0%
AATTGACTACCATTGGTATT+AGG + chr3_4:81035029-81035048 None:intergenic 30.0%
CATAAGTATCAACCATCTAT+GGG + chr3_4:81035485-81035504 None:intergenic 30.0%
! ATAGATGGTTGATACTTATG+CGG - chr3_4:81035485-81035504 Msa0526890:CDS 30.0%
GAGTGAAAATTGTACTCAAA+CGG + chr3_4:81035528-81035547 None:intergenic 30.0%
AACCATTTCTTGTTGCAGTT+AGG - chr3_4:81033193-81033212 Msa0526890:three_prime_UTR 35.0%
! TGAAAATGAGAAAGTGGGTT+GGG + chr3_4:81033257-81033276 None:intergenic 35.0%
CAAACCTGAAAATGAGAAAG+TGG + chr3_4:81033263-81033282 None:intergenic 35.0%
!!! CATTTTCAGGTTTGCACAAA+TGG - chr3_4:81033269-81033288 Msa0526890:three_prime_UTR 35.0%
!!! TTTTCAGGTTTGCACAAATG+GGG - chr3_4:81033271-81033290 Msa0526890:three_prime_UTR 35.0%
ATGTGTTGTCTATGGTTCAA+AGG - chr3_4:81033379-81033398 Msa0526890:three_prime_UTR 35.0%
ACTGTAACCAATTTGTGACA+CGG + chr3_4:81033412-81033431 None:intergenic 35.0%
GTTAGTACAATAATTGTCCC+TGG - chr3_4:81033572-81033591 Msa0526890:CDS 35.0%
TTGGTCCTTAAATGTTTGAG+GGG - chr3_4:81033719-81033738 Msa0526890:intron 35.0%
ACTTTAATGCCTCACACATT+TGG - chr3_4:81033951-81033970 Msa0526890:intron 35.0%
CTTTAATGCCTCACACATTT+GGG - chr3_4:81033952-81033971 Msa0526890:intron 35.0%
!! ATTTTGATCCCAAATGTGTG+AGG + chr3_4:81033963-81033982 None:intergenic 35.0%
CTGTGTTGTGATTAAGATGT+TGG - chr3_4:81034225-81034244 Msa0526890:intron 35.0%
! GAAACATTTGGTAGTCACTT+TGG + chr3_4:81034306-81034325 None:intergenic 35.0%
TAATCCAGGTACAAGATCAA+AGG + chr3_4:81034455-81034474 None:intergenic 35.0%
AAAGAATTCATGATTCAGGG+AGG - chr3_4:81034578-81034597 Msa0526890:CDS 35.0%
TGAAACAAATACATGGCAAG+TGG + chr3_4:81034709-81034728 None:intergenic 35.0%
CACTCAAAATGTGTTTCCAT+TGG - chr3_4:81034752-81034771 Msa0526890:intron 35.0%
GTGTTTGGACATGTTATTGA+TGG - chr3_4:81035368-81035387 Msa0526890:intron 35.0%
TGGACATGTTATTGATGGAA+TGG - chr3_4:81035373-81035392 Msa0526890:intron 35.0%
! AGATTCTGCAAGGCTTTTTA+GGG + chr3_4:81035445-81035464 None:intergenic 35.0%
! AAGATTCTGCAAGGCTTTTT+AGG + chr3_4:81035446-81035465 None:intergenic 35.0%
CCTTGCAGAATCTTTAATTG+CGG - chr3_4:81035452-81035471 Msa0526890:CDS 35.0%
GCATAAGTATCAACCATCTA+TGG + chr3_4:81035486-81035505 None:intergenic 35.0%
! TAGATGGTTGATACTTATGC+GGG - chr3_4:81035486-81035505 Msa0526890:CDS 35.0%
!! AACTTGCTAACATGATCACT+GGG + chr3_4:81035563-81035582 None:intergenic 35.0%
!! AAACTTGCTAACATGATCAC+TGG + chr3_4:81035564-81035583 None:intergenic 35.0%
! TTGACTCAAGAAGCTTTGGT+TGG + chr3_4:81033160-81033179 None:intergenic 40.0%
ACCAAAGCTTCTTGAGTCAA+AGG - chr3_4:81033160-81033179 Msa0526890:three_prime_UTR 40.0%
ACCTTTGACTCAAGAAGCTT+TGG + chr3_4:81033164-81033183 None:intergenic 40.0%
CACCTAACTGCAACAAGAAA+TGG + chr3_4:81033198-81033217 None:intergenic 40.0%
TTCTTGTTGCAGTTAGGTGA+TGG - chr3_4:81033199-81033218 Msa0526890:three_prime_UTR 40.0%
! AGATTGAAGCAGTTGAGTTG+AGG + chr3_4:81033234-81033253 None:intergenic 40.0%
CTGAAAATGAGAAAGTGGGT+TGG + chr3_4:81033258-81033277 None:intergenic 40.0%
! CAACCCACTTTCTCATTTTC+AGG - chr3_4:81033256-81033275 Msa0526890:three_prime_UTR 40.0%
! GTTTGCACAAATGGGGTTTT+GGG - chr3_4:81033278-81033297 Msa0526890:three_prime_UTR 40.0%
TAGCCAAGATGTGTTGTCTA+TGG - chr3_4:81033371-81033390 Msa0526890:three_prime_UTR 40.0%
GAACCATAGACAACACATCT+TGG + chr3_4:81033377-81033396 None:intergenic 40.0%
TCACATACCGTGTCACAAAT+TGG - chr3_4:81033402-81033421 Msa0526890:three_prime_UTR 40.0%
! TTTTCTGCCACGCAACAATT+TGG - chr3_4:81033468-81033487 Msa0526890:CDS 40.0%
ATCCTTCAACAACATCTCCA+GGG + chr3_4:81033592-81033611 None:intergenic 40.0%
GACAACCCCTCAAACATTTA+AGG + chr3_4:81033727-81033746 None:intergenic 40.0%
TGTTTCTTTGACGTAGAAGC+TGG - chr3_4:81034320-81034339 Msa0526890:CDS 40.0%
GTTTCTTTGACGTAGAAGCT+GGG - chr3_4:81034321-81034340 Msa0526890:CDS 40.0%
TTTCTTTGACGTAGAAGCTG+GGG - chr3_4:81034322-81034341 Msa0526890:CDS 40.0%
! ATCTTTGGGCAGAATCGTTT+TGG - chr3_4:81034349-81034368 Msa0526890:CDS 40.0%
! TCTTTGGGCAGAATCGTTTT+GGG - chr3_4:81034350-81034369 Msa0526890:CDS 40.0%
!! AGAATCGTTTTGGGCTTGTT+TGG - chr3_4:81034359-81034378 Msa0526890:CDS 40.0%
TGGCTTCAATAATCTTGTGC+AGG - chr3_4:81034509-81034528 Msa0526890:intron 40.0%
TAATCTTGTGCAGGAGAGAA+AGG - chr3_4:81034518-81034537 Msa0526890:intron 40.0%
GAGAAAGGATACGGTTACAA+AGG - chr3_4:81034533-81034552 Msa0526890:CDS 40.0%
AACATGCAACAGAGACATAC+AGG + chr3_4:81034836-81034855 None:intergenic 40.0%
ACTACCATTGGTATTAGGAC+CGG + chr3_4:81035024-81035043 None:intergenic 40.0%
CATGATTGGAAAGCTCACTA+TGG - chr3_4:81035188-81035207 Msa0526890:intron 40.0%
! ACATGTCGATTGTCTAACCA+CGG + chr3_4:81035347-81035366 None:intergenic 40.0%
TTGATGGAATGGATGTTGTG+AGG - chr3_4:81035384-81035403 Msa0526890:CDS 40.0%
CCGCAATTAAAGATTCTGCA+AGG + chr3_4:81035455-81035474 None:intergenic 40.0%
!! CTGCAGAATGGATTGTCATT+TGG - chr3_4:81035600-81035619 Msa0526890:intron 40.0%
!! CTAAACATGGACTAGTCATG+AGG + chr3_4:81035773-81035792 None:intergenic 40.0%
! CTCAAGAAGCTTTGGTTGGT+TGG + chr3_4:81033156-81033175 None:intergenic 45.0%
! GGTTTGCACAAATGGGGTTT+TGG - chr3_4:81033277-81033296 Msa0526890:three_prime_UTR 45.0%
TCTTGCTCCAAATTGTTGCG+TGG + chr3_4:81033478-81033497 None:intergenic 45.0%
CATCCTTCAACAACATCTCC+AGG + chr3_4:81033593-81033612 None:intergenic 45.0%
TTCTTTGACGTAGAAGCTGG+GGG - chr3_4:81034323-81034342 Msa0526890:CDS 45.0%
AATTTCCGTGCTTTGTGCAC+AGG - chr3_4:81034407-81034426 Msa0526890:intron 45.0%
TGCACCTTTGATCTTGTACC+TGG - chr3_4:81034448-81034467 Msa0526890:intron 45.0%
TGTGCAGGAGAGAAAGGATA+CGG - chr3_4:81034524-81034543 Msa0526890:CDS 45.0%
! AATGTGTTTCCATTGGCTGC+AGG - chr3_4:81034759-81034778 Msa0526890:intron 45.0%
! ATGTGTTTCCATTGGCTGCA+GGG - chr3_4:81034760-81034779 Msa0526890:intron 45.0%
ATCGGTGGAGCTAGTATCTA+TGG - chr3_4:81034784-81034803 Msa0526890:intron 45.0%
CTTCTTGCAGTGAAGCATGT+TGG - chr3_4:81034972-81034991 Msa0526890:intron 45.0%
TTTGCCATGCTCAAAACTCC+AGG + chr3_4:81034999-81035018 None:intergenic 45.0%
!! GTTTTGAGCATGGCAAATGC+CGG - chr3_4:81035002-81035021 Msa0526890:intron 45.0%
AATGCCGGTCCTAATACCAA+TGG - chr3_4:81035017-81035036 Msa0526890:intron 45.0%
TTGGAAAGCTCACTATGGCA+TGG - chr3_4:81035193-81035212 Msa0526890:intron 45.0%
GACAATCGACATGTCGTGTT+TGG - chr3_4:81035353-81035372 Msa0526890:intron 45.0%
TTGAGTCTCAGGAAACAAGC+AGG - chr3_4:81035411-81035430 Msa0526890:CDS 45.0%
! TATCATCGGTTGCTGCAGAA+TGG - chr3_4:81035588-81035607 Msa0526890:intron 45.0%
GTCCCTGGAGATGTTGTTGA+AGG - chr3_4:81033587-81033606 Msa0526890:intron 50.0%
AGAAGCTGGGGGTCAATCTT+TGG - chr3_4:81034334-81034353 Msa0526890:CDS 50.0%
GAAGCTGGGGGTCAATCTTT+GGG - chr3_4:81034335-81034354 Msa0526890:CDS 50.0%
!! CGTTTTGGGCTTGTTTGGAG+AGG - chr3_4:81034364-81034383 Msa0526890:CDS 50.0%
! TTCCATTGGCTGCAGGGAAT+CGG - chr3_4:81034766-81034785 Msa0526890:intron 50.0%
!!! TGGTCCTGGAGTTTTGAGCA+TGG - chr3_4:81034992-81035011 Msa0526890:intron 50.0%
TGTGAGGACACTTGAGTCTC+AGG - chr3_4:81035400-81035419 Msa0526890:CDS 50.0%
GCTTGCCTGTGCACAAAGCA+CGG + chr3_4:81034415-81034434 None:intergenic 55.0%
TCAGGGAGGAGACTTCACTG+AGG - chr3_4:81034592-81034611 Msa0526890:CDS 55.0%
CAGGGAGGAGACTTCACTGA+GGG - chr3_4:81034593-81034612 Msa0526890:CDS 55.0%
GCAGTGAAGCATGTTGGTCC+TGG - chr3_4:81034978-81034997 Msa0526890:intron 55.0%
GCATATGATCGCAGACTCCG+TGG - chr3_4:81035327-81035346 Msa0526890:intron 55.0%
TGCGGAGAACTGCCCATAGA+TGG - chr3_4:81035470-81035489 Msa0526890:CDS 55.0%
!! CACCGATTCCCTGCAGCCAA+TGG + chr3_4:81034771-81034790 None:intergenic 60.0%
! CATTGGCTGCAGGGAATCGG+TGG - chr3_4:81034769-81034788 Msa0526890:intron 60.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 81033115 81035817 81033115 ID=Msa0526890;Name=Msa0526890
chr3_4 mRNA 81033115 81035817 81033115 ID=Msa0526890-mRNA-1;Parent=Msa0526890;Name=Msa0526890-mRNA-1;_AED=0.08;_eAED=0.08;_QI=103|0.83|1|1|1|1|7|321|252
chr3_4 exon 81033115 81033591 81033115 ID=Msa0526890-mRNA-1:exon:24436;Parent=Msa0526890-mRNA-1
chr3_4 exon 81033865 81033950 81033865 ID=Msa0526890-mRNA-1:exon:24435;Parent=Msa0526890-mRNA-1
chr3_4 exon 81034097 81034151 81034097 ID=Msa0526890-mRNA-1:exon:24434;Parent=Msa0526890-mRNA-1
chr3_4 exon 81034313 81034401 81034313 ID=Msa0526890-mRNA-1:exon:24433;Parent=Msa0526890-mRNA-1
chr3_4 exon 81034519 81034645 81034519 ID=Msa0526890-mRNA-1:exon:24432;Parent=Msa0526890-mRNA-1
chr3_4 exon 81035384 81035569 81035384 ID=Msa0526890-mRNA-1:exon:24431;Parent=Msa0526890-mRNA-1
chr3_4 exon 81035655 81035817 81035655 ID=Msa0526890-mRNA-1:exon:24430;Parent=Msa0526890-mRNA-1
chr3_4 five_prime_UTR 81035715 81035817 81035715 ID=Msa0526890-mRNA-1:five_prime_utr;Parent=Msa0526890-mRNA-1
chr3_4 CDS 81035655 81035714 81035655 ID=Msa0526890-mRNA-1:cds;Parent=Msa0526890-mRNA-1
chr3_4 CDS 81035384 81035569 81035384 ID=Msa0526890-mRNA-1:cds;Parent=Msa0526890-mRNA-1
chr3_4 CDS 81034519 81034645 81034519 ID=Msa0526890-mRNA-1:cds;Parent=Msa0526890-mRNA-1
chr3_4 CDS 81034313 81034401 81034313 ID=Msa0526890-mRNA-1:cds;Parent=Msa0526890-mRNA-1
chr3_4 CDS 81034097 81034151 81034097 ID=Msa0526890-mRNA-1:cds;Parent=Msa0526890-mRNA-1
chr3_4 CDS 81033865 81033950 81033865 ID=Msa0526890-mRNA-1:cds;Parent=Msa0526890-mRNA-1
chr3_4 CDS 81033436 81033591 81033436 ID=Msa0526890-mRNA-1:cds;Parent=Msa0526890-mRNA-1
chr3_4 three_prime_UTR 81033115 81033435 81033115 ID=Msa0526890-mRNA-1:three_prime_utr;Parent=Msa0526890-mRNA-1
Gene Sequence

>Msa0526890

ATGGCGTTTTCATCCTCAACTCAACTGCTTCAATCTCCCAACCCACTTTCTCATTTTCAGGGTAATTTTAGCCAAGATGTGTTGTCTATGGTTCAAAGGTCACATACCGTGTCACAAATTGGTTACAGTAAATCATTGTCATTAAAATCACATGTTGCTTTGAGGTTTTCTGCCACGCAACAATTTGGAGCAAGATCAATTAGATATAGTAGGAGAATCACATGTGCAGCTGCTGCTTCCGAAAATGTTCAAGAGCTGCAAGCCAAAGTGACTACCAAATGTTTCTTTGACGTAGAAGCTGGGGGTCAATCTTTGGGCAGAATCGTTTTGGGCTTGTTTGGAGAGGTTGCTCCTAAAACAGTTGAAAATTTCCGAGAGAAAGGATACGGTTACAAAGGATGCTCCTTCCATCGTATAATCAAAGAATTCATGATTCAGGGAGGAGACTTCACTGAGGGAAATGGAATCGGTGGAGCTAGTATCTATGGTTCTAGTTTCGAAGATGAGAGTTTTGCCTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCCGGTCCTAATACCAATGGTAGTCAATTTTTTATTTGCACTGTTAAGACTCCGTGGTTAGACAATCGACATGTCGTGTTTGGACATGTTATTGATGGAATGGATGTTGTGAGGACACTTGAGTCTCAGGAAACAAGCAGGTTAGATATCCCTAAAAAGCCTTGCAGAATCTTTAATTGCGGAGAACTGCCCATAGATGGTTGA

Protein sequence

>Msa0526890

MAFSSSTQLLQSPNPLSHFQGNFSQDVLSMVQRSHTVSQIGYSKSLSLKSHVALRFSATQQFGARSIRYSRRITCAAAASENVQELQAKVTTKCFFDVEAGGQSLGRIVLGLFGEVAPKTVENFREKGYGYKGCSFHRIIKEFMIQGGDFTEGNGIGGASIYGSSFEDESFALKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDVVRTLESQETSRLDIPKKPCRIFNCGELPIDG*