Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1272620 | sp|P55852|SUMO1_ARATH | 50.633 | 79 | 38 | 1 | 2 | 80 | 10 | 87 | 6.46e-19 | 77.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1272620 | G7ZWR8 | 46.154 | 78 | 38 | 2 | 10 | 87 | 167 | 240 | 5.20e-11 | 67.0 |
| Msa1272620 | G7ZWR8 | 86.207 | 87 | 7 | 1 | 1 | 87 | 1 | 82 | 3.67e-44 | 154 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004840 | Msa1272620 | 0.829573 | 4.772531e-55 | -8.615850e-47 |
| Msa0020390 | Msa1272620 | 0.804533 | 2.064123e-49 | -8.615850e-47 |
| Msa0035150 | Msa1272620 | 0.823064 | 1.693795e-53 | -8.615850e-47 |
| Msa0038870 | Msa1272620 | 0.814389 | 1.579152e-51 | -8.615850e-47 |
| Msa0051860 | Msa1272620 | 0.813616 | 2.338453e-51 | -8.615850e-47 |
| Msa0058490 | Msa1272620 | 0.802754 | 4.828122e-49 | -8.615850e-47 |
| Msa0058510 | Msa1272620 | 0.809671 | 1.686105e-50 | -8.615850e-47 |
| Msa0065950 | Msa1272620 | 0.831059 | 2.068716e-55 | -8.615850e-47 |
| Msa0085370 | Msa1272620 | 0.805325 | 1.409947e-49 | -8.615850e-47 |
| Msa0096980 | Msa1272620 | 0.829879 | 4.020891e-55 | -8.615850e-47 |
| Msa0104800 | Msa1272620 | 0.802775 | 4.780204e-49 | -8.615850e-47 |
| Msa0604290 | Msa1272620 | 0.806510 | 7.942338e-50 | -8.615850e-47 |
| Msa0621840 | Msa1272620 | 0.804415 | 2.183621e-49 | -8.615850e-47 |
| Msa0635380 | Msa1272620 | 0.810723 | 1.000195e-50 | -8.615850e-47 |
| Msa0639350 | Msa1272620 | 0.802645 | 5.084694e-49 | -8.615850e-47 |
| Msa0640940 | Msa1272620 | 0.816846 | 4.478967e-52 | -8.615850e-47 |
| Msa0679360 | Msa1272620 | 0.814426 | 1.549710e-51 | -8.615850e-47 |
| Msa0721280 | Msa1272620 | 0.801504 | 8.729643e-49 | -8.615850e-47 |
| Msa0726830 | Msa1272620 | 0.803352 | 3.631242e-49 | -8.615850e-47 |
| Msa0732880 | Msa1272620 | 0.815334 | 9.747887e-52 | -8.615850e-47 |
| Msa0740640 | Msa1272620 | 0.804626 | 1.973687e-49 | -8.615850e-47 |
| Msa0747260 | Msa1272620 | 0.808399 | 3.156341e-50 | -8.615850e-47 |
| Msa0811430 | Msa1272620 | 0.809553 | 1.787487e-50 | -8.615850e-47 |
| Msa0145010 | Msa1272620 | 0.832364 | 9.860789e-56 | -8.615850e-47 |
| Msa0220240 | Msa1272620 | 0.809612 | 1.736315e-50 | -8.615850e-47 |
| Msa0220440 | Msa1272620 | 0.800664 | 1.296320e-48 | -8.615850e-47 |
| Msa0223330 | Msa1272620 | 0.810620 | 1.052808e-50 | -8.615850e-47 |
| Msa0233380 | Msa1272620 | 0.812318 | 4.503848e-51 | -8.615850e-47 |
| Msa1230080 | Msa1272620 | 0.869966 | 2.083389e-66 | -8.615850e-47 |
| Msa1256470 | Msa1272620 | 0.808199 | 3.482955e-50 | -8.615850e-47 |
| Msa1266020 | Msa1272620 | 0.807716 | 4.412652e-50 | -8.615850e-47 |
| Msa1272620 | Msa1272870 | 0.818893 | 1.545684e-52 | -8.615850e-47 |
| Msa1272620 | Msa1297530 | 0.803072 | 4.149897e-49 | -8.615850e-47 |
| Msa1272620 | Msa1310400 | 0.871365 | 7.222702e-67 | -8.615850e-47 |
| Msa1272620 | Msa1357890 | 0.802000 | 6.903372e-49 | -8.615850e-47 |
| Msa1272620 | Msa1398090 | 0.803022 | 4.249986e-49 | -8.615850e-47 |
| Msa1272620 | Msa1410690 | 0.805483 | 1.306154e-49 | -8.615850e-47 |
| Msa1272620 | Msa1423910 | 0.802630 | 5.121384e-49 | -8.615850e-47 |
| Msa1272620 | Msa1426910 | 0.818737 | 1.676694e-52 | -8.615850e-47 |
| Msa1272620 | Msa1448620 | 0.803258 | 3.798950e-49 | -8.615850e-47 |
| Msa1272620 | Msa1448630 | 0.815815 | 7.617902e-52 | -8.615850e-47 |
| Msa1272620 | Msa1458610 | 0.830964 | 2.183237e-55 | -8.615850e-47 |
| Msa1272620 | Msa1462290 | 0.803343 | 3.647723e-49 | -8.615850e-47 |
| Msa0388650 | Msa1272620 | 0.801268 | 9.756569e-49 | -8.615850e-47 |
| Msa0391690 | Msa1272620 | 0.812226 | 4.717341e-51 | -8.615850e-47 |
| Msa0994370 | Msa1272620 | 0.810594 | 1.066780e-50 | -8.615850e-47 |
| Msa1023180 | Msa1272620 | 0.809803 | 1.579623e-50 | -8.615850e-47 |
| Msa1037520 | Msa1272620 | 0.807477 | 4.960099e-50 | -8.615850e-47 |
| Msa1043050 | Msa1272620 | 0.815566 | 8.658375e-52 | -8.615850e-47 |
| Msa1072900 | Msa1272620 | 0.816336 | 5.829809e-52 | -8.615850e-47 |
| Msa1081220 | Msa1272620 | 0.803291 | 3.738395e-49 | -8.615850e-47 |
| Msa0253200 | Msa1272620 | 0.807205 | 5.664297e-50 | -8.615850e-47 |
| Msa0257490 | Msa1272620 | 0.805219 | 1.483628e-49 | -8.615850e-47 |
| Msa0271360 | Msa1272620 | 0.809145 | 2.187101e-50 | -8.615850e-47 |
| Msa0292030 | Msa1272620 | 0.806563 | 7.741152e-50 | -8.615850e-47 |
| Msa0296790 | Msa1272620 | 0.817831 | 2.688405e-52 | -8.615850e-47 |
| Msa0311730 | Msa1272620 | 0.803822 | 2.901288e-49 | -8.615850e-47 |
| Msa0321690 | Msa1272620 | 0.801735 | 7.826387e-49 | -8.615850e-47 |
| Msa0330310 | Msa1272620 | 0.818080 | 2.362743e-52 | -8.615850e-47 |
| Msa0337060 | Msa1272620 | 0.805716 | 1.166864e-49 | -8.615850e-47 |
| Msa0346430 | Msa1272620 | 0.809589 | 1.756012e-50 | -8.615850e-47 |
| Msa1150710 | Msa1272620 | 0.816024 | 6.843673e-52 | -8.615850e-47 |
| Msa1186360 | Msa1272620 | 0.814541 | 1.461524e-51 | -8.615850e-47 |
| Msa1205590 | Msa1272620 | 0.805086 | 1.582102e-49 | -8.615850e-47 |
| Msa0485680 | Msa1272620 | 0.815718 | 8.006335e-52 | -8.615850e-47 |
| Msa0491000 | Msa1272620 | 0.806739 | 7.107735e-50 | -8.615850e-47 |
| Msa0542290 | Msa1272620 | 0.814707 | 1.343591e-51 | -8.615850e-47 |
| Msa0542560 | Msa1272620 | 0.804205 | 2.415510e-49 | -8.615850e-47 |
| Msa0600450 | Msa1272620 | 0.813836 | 2.091772e-51 | -8.615850e-47 |
| Msa0851620 | Msa1272620 | 0.811861 | 5.663289e-51 | -8.615850e-47 |
| Msa0861500 | Msa1272620 | 0.803726 | 3.038304e-49 | -8.615850e-47 |
| Msa0872440 | Msa1272620 | 0.816549 | 5.221818e-52 | -8.615850e-47 |
| Msa0882510 | Msa1272620 | 0.804031 | 2.625329e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1272620 | MtrunA17_Chr8g0337911 | 78.205 | 78 | 12 | 1 | 10 | 87 | 57 | 129 | 3.67e-36 | 125 |
| Msa1272620 | MtrunA17_Chr8g0337911 | 46.154 | 78 | 38 | 2 | 10 | 87 | 214 | 287 | 1.26e-14 | 67.0 |
| Msa1272620 | MtrunA17_Chr3g0099761 | 49.367 | 79 | 39 | 1 | 2 | 80 | 15 | 92 | 4.73e-20 | 77.0 |
| Msa1272620 | MtrunA17_Chr3g0099771 | 48.101 | 79 | 40 | 1 | 2 | 80 | 15 | 92 | 9.61e-20 | 76.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1272620 | AT4G26840.1 | 50.633 | 79 | 38 | 1 | 2 | 80 | 10 | 87 | 6.57e-20 | 77.0 |
| Msa1272620 | AT5G55160.1 | 50.667 | 75 | 36 | 1 | 6 | 80 | 13 | 86 | 1.66e-19 | 76.3 |
| Msa1272620 | AT5G55160.2 | 52.381 | 63 | 29 | 1 | 18 | 80 | 38 | 99 | 1.08e-15 | 66.6 |
Find 19 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATTGGCTTCATGTCTTCTT+AGG | 0.169433 | 8_3:+6384146 | None:intergenic |
| TTCACAGTTTCACACAATAT+TGG | 0.260179 | 8_3:-6384174 | None:intergenic |
| ATAATAACACAAACCTTATC+TGG | 0.311786 | 8_3:+6382385 | None:intergenic |
| ATACATGTACCCTCTTTGAT+TGG | 0.388364 | 8_3:+6384129 | None:intergenic |
| GTTTGATGGCAATGGTCTCC+AGG | 0.400873 | 8_3:-6382419 | Msa1272620:CDS |
| TGGGAATAATGATAATGAAA+TGG | 0.437567 | 8_3:-6382266 | Msa1272620:CDS |
| CTTCAGATGCACATGGAAGA+TGG | 0.456997 | 8_3:-6382286 | Msa1272620:intron |
| GGGAGACCATTGTCCAGATA+AGG | 0.491253 | 8_3:-6382398 | Msa1272620:intron |
| GTAGGATGGGAATGTAACTT+TGG | 0.502737 | 8_3:-6382533 | Msa1272620:intron |
| TTCAGATGCACATGGAAGAT+GGG | 0.520286 | 8_3:-6382285 | Msa1272620:intron |
| TATCTGGACAATGGTCTCCC+TGG | 0.545542 | 8_3:+6382401 | None:intergenic |
| CAGACTCAAGCTTAATGCCC+AGG | 0.559881 | 8_3:-6384106 | Msa1272620:intron |
| GACATGAAGCCAATCAAAGA+GGG | 0.585960 | 8_3:-6384138 | Msa1272620:CDS |
| TTTGATGGCAATGGTCTCCA+GGG | 0.609879 | 8_3:-6382418 | Msa1272620:CDS |
| CACAAACCTTATCTGGACAA+TGG | 0.629501 | 8_3:+6382392 | None:intergenic |
| AGACATGAAGCCAATCAAAG+AGG | 0.636641 | 8_3:-6384139 | Msa1272620:exon |
| TGCACTCTGATCATAAGAGA+TGG | 0.684429 | 8_3:+6382240 | None:intergenic |
| TATTTGGCTTCAGATGCACA+TGG | 0.697063 | 8_3:-6382293 | Msa1272620:intron |
| TTATTGTGATGAGCACTCTG+TGG | 0.727654 | 8_3:-6382467 | Msa1272620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTTTTATTATATAT+AGG | - | chr8_3:6383096-6383115 | Msa1272620:intron | 0.0% |
| !!! | AATTTTTTTTTATTATATAT+AGG | - | chr8_3:6383096-6383115 | Msa1272620:intron | 0.0% |
| !! | ATAATAAAAAAAAATTGAAG+AGG | + | chr8_3:6383092-6383111 | None:intergenic | 10.0% |
| !! | TATTGTATATCTATAATATA+TGG | - | chr8_3:6383184-6383203 | Msa1272620:intron | 10.0% |
| !! | ATTGTATATCTATAATATAT+GGG | - | chr8_3:6383185-6383204 | Msa1272620:intron | 10.0% |
| !! | ATAATAAAAAAAAATTGAAG+AGG | + | chr8_3:6383092-6383111 | None:intergenic | 10.0% |
| !! | TATTGTATATCTATAATATA+TGG | - | chr8_3:6383184-6383203 | Msa1272620:intron | 10.0% |
| !! | ATTGTATATCTATAATATAT+GGG | - | chr8_3:6383185-6383204 | Msa1272620:intron | 10.0% |
| !!! | GTGATAAAAATATAGATTTT+AGG | - | chr8_3:6382761-6382780 | Msa1272620:intron | 15.0% |
| !! | AAAAGAAAGATAGATATATA+TGG | + | chr8_3:6383228-6383247 | None:intergenic | 15.0% |
| !!! | GTGATAAAAATATAGATTTT+AGG | - | chr8_3:6382761-6382780 | Msa1272620:intron | 15.0% |
| !! | AAAAGAAAGATAGATATATA+TGG | + | chr8_3:6383228-6383247 | None:intergenic | 15.0% |
| !! | ATACAAATGAGTTATGTATA+TGG | - | chr8_3:6382420-6382439 | Msa1272620:CDS | 20.0% |
| !!! | ATTTACTTTTATCCAATATC+AGG | - | chr8_3:6382673-6382692 | Msa1272620:intron | 20.0% |
| !! | TCTTTATTAGTATCTATCTT+TGG | - | chr8_3:6382712-6382731 | Msa1272620:intron | 20.0% |
| !! | CTTTATTAGTATCTATCTTT+GGG | - | chr8_3:6382713-6382732 | Msa1272620:intron | 20.0% |
| !!! | AGGAAAAAAAAGTTTGATTT+GGG | - | chr8_3:6382874-6382893 | Msa1272620:intron | 20.0% |
| !! | CTAATTATTCAATATATCGT+GGG | - | chr8_3:6383148-6383167 | Msa1272620:intron | 20.0% |
| !!! | TTTTTTATGATTTCAAGTAC+TGG | + | chr8_3:6383533-6383552 | None:intergenic | 20.0% |
| !! | AATCATAAAAAATTCAACGA+CGG | - | chr8_3:6383541-6383560 | Msa1272620:intron | 20.0% |
| !! | CTATTTCAATTGTAAAAATG+AGG | - | chr8_3:6383674-6383693 | Msa1272620:intron | 20.0% |
| !! | TGTTAAGAGTAATTCTAATA+TGG | + | chr8_3:6383800-6383819 | None:intergenic | 20.0% |
| !!! | ATCATAACTCTATTACTTTT+TGG | - | chr8_3:6383965-6383984 | Msa1272620:intron | 20.0% |
| !! | CATAAAAACCAATAACTATT+TGG | + | chr8_3:6384082-6384101 | None:intergenic | 20.0% |
| !! | TTATGACTTCCTAATATATT+TGG | - | chr8_3:6384097-6384116 | Msa1272620:intron | 20.0% |
| !! | ATACAAATGAGTTATGTATA+TGG | - | chr8_3:6382420-6382439 | Msa1272620:CDS | 20.0% |
| !!! | ATTTACTTTTATCCAATATC+AGG | - | chr8_3:6382673-6382692 | Msa1272620:intron | 20.0% |
| !! | TCTTTATTAGTATCTATCTT+TGG | - | chr8_3:6382712-6382731 | Msa1272620:intron | 20.0% |
| !! | CTTTATTAGTATCTATCTTT+GGG | - | chr8_3:6382713-6382732 | Msa1272620:intron | 20.0% |
| !!! | AGGAAAAAAAAGTTTGATTT+GGG | - | chr8_3:6382874-6382893 | Msa1272620:intron | 20.0% |
| !! | CTAATTATTCAATATATCGT+GGG | - | chr8_3:6383148-6383167 | Msa1272620:intron | 20.0% |
| !!! | TTTTTTATGATTTCAAGTAC+TGG | + | chr8_3:6383533-6383552 | None:intergenic | 20.0% |
| !! | AATCATAAAAAATTCAACGA+CGG | - | chr8_3:6383541-6383560 | Msa1272620:intron | 20.0% |
| !! | CTATTTCAATTGTAAAAATG+AGG | - | chr8_3:6383674-6383693 | Msa1272620:intron | 20.0% |
| !! | TGTTAAGAGTAATTCTAATA+TGG | + | chr8_3:6383800-6383819 | None:intergenic | 20.0% |
| !!! | ATCATAACTCTATTACTTTT+TGG | - | chr8_3:6383965-6383984 | Msa1272620:intron | 20.0% |
| !! | CATAAAAACCAATAACTATT+TGG | + | chr8_3:6384082-6384101 | None:intergenic | 20.0% |
| !! | TTATGACTTCCTAATATATT+TGG | - | chr8_3:6384097-6384116 | Msa1272620:intron | 20.0% |
| ! | AAATAAAAACCAACCTACTT+TGG | + | chr8_3:6382641-6382660 | None:intergenic | 25.0% |
| ! | GAGGAAAAAAAAGTTTGATT+TGG | - | chr8_3:6382873-6382892 | Msa1272620:intron | 25.0% |
| !!! | AAAAAAAAGTTTGATTTGGG+TGG | - | chr8_3:6382877-6382896 | Msa1272620:intron | 25.0% |
| !!! | AAAAAAAGTTTGATTTGGGT+GGG | - | chr8_3:6382878-6382897 | Msa1272620:intron | 25.0% |
| ! | ATGAGAAGCAAATTAATTGA+AGG | + | chr8_3:6383051-6383070 | None:intergenic | 25.0% |
| ! | GCTAATTATTCAATATATCG+TGG | - | chr8_3:6383147-6383166 | Msa1272620:intron | 25.0% |
| ! | GAGATGATTATTTAGTTGTT+TGG | + | chr8_3:6383277-6383296 | None:intergenic | 25.0% |
| ! | GAAAGTGAATAGAAAATAAG+TGG | + | chr8_3:6383305-6383324 | None:intergenic | 25.0% |
| ! | ATATCTATATTTACTTCCCT+TGG | + | chr8_3:6383391-6383410 | None:intergenic | 25.0% |
| ! | AATAGTCAGTTAAATGATAC+TGG | + | chr8_3:6383659-6383678 | None:intergenic | 25.0% |
| ! | TTTCAATTGTAAAAATGAGG+AGG | - | chr8_3:6383677-6383696 | Msa1272620:intron | 25.0% |
| !!! | TTTTAAGTACTAGTCTATGA+TGG | - | chr8_3:6383756-6383775 | Msa1272620:intron | 25.0% |
| !! | GATAGTATGTTTCTAATGTA+TGG | - | chr8_3:6383838-6383857 | Msa1272620:intron | 25.0% |
| !! | TGTTTCTAATGTATGGTTAT+TGG | - | chr8_3:6383845-6383864 | Msa1272620:intron | 25.0% |
| !!! | TCTATTACTTTTTGGTTTGA+TGG | - | chr8_3:6383973-6383992 | Msa1272620:intron | 25.0% |
| ! | ATAATAACACAAACCTTATC+TGG | + | chr8_3:6384024-6384043 | None:intergenic | 25.0% |
| ! | CAATTGATCCAAATAGTTAT+TGG | - | chr8_3:6384071-6384090 | Msa1272620:intron | 25.0% |
| !! | TGGGAATAATGATAATGAAA+TGG | - | chr8_3:6384140-6384159 | Msa1272620:exon | 25.0% |
| ! | AAATAAAAACCAACCTACTT+TGG | + | chr8_3:6382641-6382660 | None:intergenic | 25.0% |
| ! | GAGGAAAAAAAAGTTTGATT+TGG | - | chr8_3:6382873-6382892 | Msa1272620:intron | 25.0% |
| !!! | AAAAAAAAGTTTGATTTGGG+TGG | - | chr8_3:6382877-6382896 | Msa1272620:intron | 25.0% |
| !!! | AAAAAAAGTTTGATTTGGGT+GGG | - | chr8_3:6382878-6382897 | Msa1272620:intron | 25.0% |
| ! | ATGAGAAGCAAATTAATTGA+AGG | + | chr8_3:6383051-6383070 | None:intergenic | 25.0% |
| ! | GCTAATTATTCAATATATCG+TGG | - | chr8_3:6383147-6383166 | Msa1272620:intron | 25.0% |
| ! | GAGATGATTATTTAGTTGTT+TGG | + | chr8_3:6383277-6383296 | None:intergenic | 25.0% |
| ! | GAAAGTGAATAGAAAATAAG+TGG | + | chr8_3:6383305-6383324 | None:intergenic | 25.0% |
| ! | ATATCTATATTTACTTCCCT+TGG | + | chr8_3:6383391-6383410 | None:intergenic | 25.0% |
| ! | AATAGTCAGTTAAATGATAC+TGG | + | chr8_3:6383659-6383678 | None:intergenic | 25.0% |
| ! | TTTCAATTGTAAAAATGAGG+AGG | - | chr8_3:6383677-6383696 | Msa1272620:intron | 25.0% |
| !!! | TTTTAAGTACTAGTCTATGA+TGG | - | chr8_3:6383756-6383775 | Msa1272620:intron | 25.0% |
| !! | GATAGTATGTTTCTAATGTA+TGG | - | chr8_3:6383838-6383857 | Msa1272620:intron | 25.0% |
| !! | TGTTTCTAATGTATGGTTAT+TGG | - | chr8_3:6383845-6383864 | Msa1272620:intron | 25.0% |
| !!! | TCTATTACTTTTTGGTTTGA+TGG | - | chr8_3:6383973-6383992 | Msa1272620:intron | 25.0% |
| ! | ATAATAACACAAACCTTATC+TGG | + | chr8_3:6384024-6384043 | None:intergenic | 25.0% |
| ! | CAATTGATCCAAATAGTTAT+TGG | - | chr8_3:6384071-6384090 | Msa1272620:intron | 25.0% |
| !! | TGGGAATAATGATAATGAAA+TGG | - | chr8_3:6384140-6384159 | Msa1272620:exon | 25.0% |
| !! | GGGAAGATTTTGAAAGATTT+TGG | + | chr8_3:6382525-6382544 | None:intergenic | 30.0% |
| ! | TTTGTTTCTTTGTCCAAAGT+AGG | - | chr8_3:6382625-6382644 | Msa1272620:intron | 30.0% |
| ! | ACTTTTATCCAATATCAGGT+AGG | - | chr8_3:6382677-6382696 | Msa1272620:intron | 30.0% |
| TATTAGTATCTATCTTTGGG+AGG | - | chr8_3:6382716-6382735 | Msa1272620:intron | 30.0% | |
| ! | ATTAGTATCTATCTTTGGGA+GGG | - | chr8_3:6382717-6382736 | Msa1272620:intron | 30.0% |
| TTCTTTCCTTCATCAATCAA+TGG | + | chr8_3:6382802-6382821 | None:intergenic | 30.0% | |
| ! | AGGAAAGAAAGCATAAAGAA+TGG | - | chr8_3:6382813-6382832 | Msa1272620:intron | 30.0% |
| TGCTTCAAAGTTCAAAGTAA+GGG | + | chr8_3:6382983-6383002 | None:intergenic | 30.0% | |
| AAAGAAAGTAGTAGGAAAGA+AGG | + | chr8_3:6383338-6383357 | None:intergenic | 30.0% | |
| ! | CTCTTGGTAGTAGATATTAA+TGG | + | chr8_3:6383704-6383723 | None:intergenic | 30.0% |
| TCTAATGTATGGTTATTGGA+TGG | - | chr8_3:6383849-6383868 | Msa1272620:intron | 30.0% | |
| ! | CATCTGAAGCCAAATATATT+AGG | + | chr8_3:6384109-6384128 | None:intergenic | 30.0% |
| !! | GGGAAGATTTTGAAAGATTT+TGG | + | chr8_3:6382525-6382544 | None:intergenic | 30.0% |
| ! | TTTGTTTCTTTGTCCAAAGT+AGG | - | chr8_3:6382625-6382644 | Msa1272620:intron | 30.0% |
| ! | ACTTTTATCCAATATCAGGT+AGG | - | chr8_3:6382677-6382696 | Msa1272620:intron | 30.0% |
| TATTAGTATCTATCTTTGGG+AGG | - | chr8_3:6382716-6382735 | Msa1272620:intron | 30.0% | |
| ! | ATTAGTATCTATCTTTGGGA+GGG | - | chr8_3:6382717-6382736 | Msa1272620:intron | 30.0% |
| TTCTTTCCTTCATCAATCAA+TGG | + | chr8_3:6382802-6382821 | None:intergenic | 30.0% | |
| ! | AGGAAAGAAAGCATAAAGAA+TGG | - | chr8_3:6382813-6382832 | Msa1272620:intron | 30.0% |
| TGCTTCAAAGTTCAAAGTAA+GGG | + | chr8_3:6382983-6383002 | None:intergenic | 30.0% | |
| AAAGAAAGTAGTAGGAAAGA+AGG | + | chr8_3:6383338-6383357 | None:intergenic | 30.0% | |
| ! | CTCTTGGTAGTAGATATTAA+TGG | + | chr8_3:6383704-6383723 | None:intergenic | 30.0% |
| TCTAATGTATGGTTATTGGA+TGG | - | chr8_3:6383849-6383868 | Msa1272620:intron | 30.0% | |
| ! | CATCTGAAGCCAAATATATT+AGG | + | chr8_3:6384109-6384128 | None:intergenic | 30.0% |
| ATACATGTACCCTCTTTGAT+TGG | + | chr8_3:6382280-6382299 | None:intergenic | 35.0% | |
| AGGAAAGAAGTAATGAACCT+GGG | + | chr8_3:6382320-6382339 | None:intergenic | 35.0% | |
| AAGGAAAGAAGTAATGAACC+TGG | + | chr8_3:6382321-6382340 | None:intergenic | 35.0% | |
| GGTTCATTACTTCTTTCCTT+TGG | - | chr8_3:6382321-6382340 | Msa1272620:intron | 35.0% | |
| TACTTCTTTCCTTTGGTTAC+TGG | - | chr8_3:6382328-6382347 | Msa1272620:intron | 35.0% | |
| !!! | TTTCCTTTGGTTACTGGTTT+TGG | - | chr8_3:6382334-6382353 | Msa1272620:intron | 35.0% |
| ! | AACCAAAAGGTATGATTGCT+GGG | + | chr8_3:6382545-6382564 | None:intergenic | 35.0% |
| ! | AAACCAAAAGGTATGATTGC+TGG | + | chr8_3:6382546-6382565 | None:intergenic | 35.0% |
| !! | AGCAATCATACCTTTTGGTT+TGG | - | chr8_3:6382545-6382564 | Msa1272620:intron | 35.0% |
| TGAAGGAAAACCAAACCAAA+AGG | + | chr8_3:6382558-6382577 | None:intergenic | 35.0% | |
| !!! | TTTGGTTTGGTTTTCCTTCA+TGG | - | chr8_3:6382558-6382577 | Msa1272620:intron | 35.0% |
| !!! | TTGGTTTGGTTTTCCTTCAT+GGG | - | chr8_3:6382559-6382578 | Msa1272620:intron | 35.0% |
| ! | CAAAGGATTTTATCCCATGA+AGG | + | chr8_3:6382575-6382594 | None:intergenic | 35.0% |
| TACATCAGGTAAGACAACAA+AGG | + | chr8_3:6382592-6382611 | None:intergenic | 35.0% | |
| ! | TTTGTTGTCTTACCTGATGT+AGG | - | chr8_3:6382591-6382610 | Msa1272620:intron | 35.0% |
| TTGTTGTCTTACCTGATGTA+GGG | - | chr8_3:6382592-6382611 | Msa1272620:intron | 35.0% | |
| GACAAAGAAACAAAGATGAG+CGG | + | chr8_3:6382619-6382638 | None:intergenic | 35.0% | |
| TTTCTTTGTCCAAAGTAGGT+TGG | - | chr8_3:6382629-6382648 | Msa1272620:intron | 35.0% | |
| !! | AGATTTTAGGTACCTGTGTT+TGG | - | chr8_3:6382774-6382793 | Msa1272620:intron | 35.0% |
| ! | TTGGTACCATTGATTGATGA+AGG | - | chr8_3:6382793-6382812 | Msa1272620:intron | 35.0% |
| TTGTCAAAGCAATCAAACGA+TGG | + | chr8_3:6382852-6382871 | None:intergenic | 35.0% | |
| GTTTGATTGCTTTGACAAAG+AGG | - | chr8_3:6382854-6382873 | Msa1272620:intron | 35.0% | |
| GTGCTTCAAAGTTCAAAGTA+AGG | + | chr8_3:6382984-6383003 | None:intergenic | 35.0% | |
| GTAGTAGGAAAGAAGGTTAA+AGG | + | chr8_3:6383331-6383350 | None:intergenic | 35.0% | |
| GTGTAAGGAAAGAAAGTAGT+AGG | + | chr8_3:6383346-6383365 | None:intergenic | 35.0% | |
| TTTACTTCCCTTGGTATGTT+TGG | + | chr8_3:6383382-6383401 | None:intergenic | 35.0% | |
| CAGAATTGAGAAAAGACCTT+AGG | + | chr8_3:6383434-6383453 | None:intergenic | 35.0% | |
| TTTGCAACTTACAAGTTCTG+CGG | - | chr8_3:6383476-6383495 | Msa1272620:intron | 35.0% | |
| TGACGATAGATATCATCTCT+TGG | + | chr8_3:6383720-6383739 | None:intergenic | 35.0% | |
| GAGATGATATCTATCGTCAT+TGG | - | chr8_3:6383721-6383740 | Msa1272620:intron | 35.0% | |
| TCAACTGAAAAAGCTAGTGA+AGG | - | chr8_3:6383915-6383934 | Msa1272620:intron | 35.0% | |
| !!! | ACTTTTTGGTTTGATGGCAA+TGG | - | chr8_3:6383979-6383998 | Msa1272620:intron | 35.0% |
| ATACATGTACCCTCTTTGAT+TGG | + | chr8_3:6382280-6382299 | None:intergenic | 35.0% | |
| AGGAAAGAAGTAATGAACCT+GGG | + | chr8_3:6382320-6382339 | None:intergenic | 35.0% | |
| AAGGAAAGAAGTAATGAACC+TGG | + | chr8_3:6382321-6382340 | None:intergenic | 35.0% | |
| GGTTCATTACTTCTTTCCTT+TGG | - | chr8_3:6382321-6382340 | Msa1272620:intron | 35.0% | |
| TACTTCTTTCCTTTGGTTAC+TGG | - | chr8_3:6382328-6382347 | Msa1272620:intron | 35.0% | |
| !!! | TTTCCTTTGGTTACTGGTTT+TGG | - | chr8_3:6382334-6382353 | Msa1272620:intron | 35.0% |
| ! | AACCAAAAGGTATGATTGCT+GGG | + | chr8_3:6382545-6382564 | None:intergenic | 35.0% |
| ! | AAACCAAAAGGTATGATTGC+TGG | + | chr8_3:6382546-6382565 | None:intergenic | 35.0% |
| !! | AGCAATCATACCTTTTGGTT+TGG | - | chr8_3:6382545-6382564 | Msa1272620:intron | 35.0% |
| TGAAGGAAAACCAAACCAAA+AGG | + | chr8_3:6382558-6382577 | None:intergenic | 35.0% | |
| !!! | TTTGGTTTGGTTTTCCTTCA+TGG | - | chr8_3:6382558-6382577 | Msa1272620:intron | 35.0% |
| !!! | TTGGTTTGGTTTTCCTTCAT+GGG | - | chr8_3:6382559-6382578 | Msa1272620:intron | 35.0% |
| ! | CAAAGGATTTTATCCCATGA+AGG | + | chr8_3:6382575-6382594 | None:intergenic | 35.0% |
| TACATCAGGTAAGACAACAA+AGG | + | chr8_3:6382592-6382611 | None:intergenic | 35.0% | |
| ! | TTTGTTGTCTTACCTGATGT+AGG | - | chr8_3:6382591-6382610 | Msa1272620:intron | 35.0% |
| TTGTTGTCTTACCTGATGTA+GGG | - | chr8_3:6382592-6382611 | Msa1272620:intron | 35.0% | |
| GACAAAGAAACAAAGATGAG+CGG | + | chr8_3:6382619-6382638 | None:intergenic | 35.0% | |
| TTTCTTTGTCCAAAGTAGGT+TGG | - | chr8_3:6382629-6382648 | Msa1272620:intron | 35.0% | |
| !! | AGATTTTAGGTACCTGTGTT+TGG | - | chr8_3:6382774-6382793 | Msa1272620:intron | 35.0% |
| ! | TTGGTACCATTGATTGATGA+AGG | - | chr8_3:6382793-6382812 | Msa1272620:intron | 35.0% |
| TTGTCAAAGCAATCAAACGA+TGG | + | chr8_3:6382852-6382871 | None:intergenic | 35.0% | |
| GTTTGATTGCTTTGACAAAG+AGG | - | chr8_3:6382854-6382873 | Msa1272620:intron | 35.0% | |
| GTGCTTCAAAGTTCAAAGTA+AGG | + | chr8_3:6382984-6383003 | None:intergenic | 35.0% | |
| GTAGTAGGAAAGAAGGTTAA+AGG | + | chr8_3:6383331-6383350 | None:intergenic | 35.0% | |
| GTGTAAGGAAAGAAAGTAGT+AGG | + | chr8_3:6383346-6383365 | None:intergenic | 35.0% | |
| TTTACTTCCCTTGGTATGTT+TGG | + | chr8_3:6383382-6383401 | None:intergenic | 35.0% | |
| CAGAATTGAGAAAAGACCTT+AGG | + | chr8_3:6383434-6383453 | None:intergenic | 35.0% | |
| TTTGCAACTTACAAGTTCTG+CGG | - | chr8_3:6383476-6383495 | Msa1272620:intron | 35.0% | |
| TGACGATAGATATCATCTCT+TGG | + | chr8_3:6383720-6383739 | None:intergenic | 35.0% | |
| GAGATGATATCTATCGTCAT+TGG | - | chr8_3:6383721-6383740 | Msa1272620:intron | 35.0% | |
| TCAACTGAAAAAGCTAGTGA+AGG | - | chr8_3:6383915-6383934 | Msa1272620:intron | 35.0% | |
| !!! | ACTTTTTGGTTTGATGGCAA+TGG | - | chr8_3:6383979-6383998 | Msa1272620:intron | 35.0% |
| !! | GATTGGCTTCATGTCTTCTT+AGG | + | chr8_3:6382263-6382282 | None:intergenic | 40.0% |
| AGACATGAAGCCAATCAAAG+AGG | - | chr8_3:6382267-6382286 | Msa1272620:CDS | 40.0% | |
| GACATGAAGCCAATCAAAGA+GGG | - | chr8_3:6382268-6382287 | Msa1272620:CDS | 40.0% | |
| AAGCCAAAACCAGTAACCAA+AGG | + | chr8_3:6382340-6382359 | None:intergenic | 40.0% | |
| !!! | ACTGGTTTTGGCTTTGATGA+AGG | - | chr8_3:6382346-6382365 | Msa1272620:intron | 40.0% |
| ! | TTCCCAGCAATCATACCTTT+TGG | - | chr8_3:6382540-6382559 | Msa1272620:intron | 40.0% |
| TGAAGCTTCCTACCTGATAT+TGG | + | chr8_3:6382688-6382707 | None:intergenic | 40.0% | |
| CAATCAATGGTACCAAACAC+AGG | + | chr8_3:6382789-6382808 | None:intergenic | 40.0% | |
| ATTGCGAAGAAAGCTGGATT+AGG | - | chr8_3:6382929-6382948 | Msa1272620:intron | 40.0% | |
| ! | AAAAATTGAAGAGGCACGCA+TGG | + | chr8_3:6383083-6383102 | None:intergenic | 40.0% |
| ! | GGATGACGAAAGAAAGTGTA+AGG | + | chr8_3:6383361-6383380 | None:intergenic | 40.0% |
| TTCGTCATCCAAACATACCA+AGG | - | chr8_3:6383371-6383390 | Msa1272620:intron | 40.0% | |
| TCGTCATCCAAACATACCAA+GGG | - | chr8_3:6383372-6383391 | Msa1272620:intron | 40.0% | |
| TAAGTGTTCTCTGAGTCCTA+AGG | - | chr8_3:6383415-6383434 | Msa1272620:intron | 40.0% | |
| GTATGGTTATTGGATGGTGT+AGG | - | chr8_3:6383855-6383874 | Msa1272620:intron | 40.0% | |
| GTTATTGGATGGTGTAGGAT+GGG | - | chr8_3:6383860-6383879 | Msa1272620:intron | 40.0% | |
| GTAGGATGGGAATGTAACTT+TGG | - | chr8_3:6383873-6383892 | Msa1272620:intron | 40.0% | |
| TTATTGTGATGAGCACTCTG+TGG | - | chr8_3:6383939-6383958 | Msa1272620:intron | 40.0% | |
| CACAAACCTTATCTGGACAA+TGG | + | chr8_3:6384017-6384036 | None:intergenic | 40.0% | |
| ! | TATTTGGCTTCAGATGCACA+TGG | - | chr8_3:6384113-6384132 | Msa1272620:CDS | 40.0% |
| TTCAGATGCACATGGAAGAT+GGG | - | chr8_3:6384121-6384140 | Msa1272620:CDS | 40.0% | |
| !! | GATTGGCTTCATGTCTTCTT+AGG | + | chr8_3:6382263-6382282 | None:intergenic | 40.0% |
| AGACATGAAGCCAATCAAAG+AGG | - | chr8_3:6382267-6382286 | Msa1272620:CDS | 40.0% | |
| GACATGAAGCCAATCAAAGA+GGG | - | chr8_3:6382268-6382287 | Msa1272620:CDS | 40.0% | |
| AAGCCAAAACCAGTAACCAA+AGG | + | chr8_3:6382340-6382359 | None:intergenic | 40.0% | |
| !!! | ACTGGTTTTGGCTTTGATGA+AGG | - | chr8_3:6382346-6382365 | Msa1272620:intron | 40.0% |
| ! | TTCCCAGCAATCATACCTTT+TGG | - | chr8_3:6382540-6382559 | Msa1272620:intron | 40.0% |
| TGAAGCTTCCTACCTGATAT+TGG | + | chr8_3:6382688-6382707 | None:intergenic | 40.0% | |
| CAATCAATGGTACCAAACAC+AGG | + | chr8_3:6382789-6382808 | None:intergenic | 40.0% | |
| ATTGCGAAGAAAGCTGGATT+AGG | - | chr8_3:6382929-6382948 | Msa1272620:intron | 40.0% | |
| ! | AAAAATTGAAGAGGCACGCA+TGG | + | chr8_3:6383083-6383102 | None:intergenic | 40.0% |
| ! | GGATGACGAAAGAAAGTGTA+AGG | + | chr8_3:6383361-6383380 | None:intergenic | 40.0% |
| TTCGTCATCCAAACATACCA+AGG | - | chr8_3:6383371-6383390 | Msa1272620:intron | 40.0% | |
| TCGTCATCCAAACATACCAA+GGG | - | chr8_3:6383372-6383391 | Msa1272620:intron | 40.0% | |
| TAAGTGTTCTCTGAGTCCTA+AGG | - | chr8_3:6383415-6383434 | Msa1272620:intron | 40.0% | |
| GTATGGTTATTGGATGGTGT+AGG | - | chr8_3:6383855-6383874 | Msa1272620:intron | 40.0% | |
| GTTATTGGATGGTGTAGGAT+GGG | - | chr8_3:6383860-6383879 | Msa1272620:intron | 40.0% | |
| GTAGGATGGGAATGTAACTT+TGG | - | chr8_3:6383873-6383892 | Msa1272620:intron | 40.0% | |
| TTATTGTGATGAGCACTCTG+TGG | - | chr8_3:6383939-6383958 | Msa1272620:intron | 40.0% | |
| CACAAACCTTATCTGGACAA+TGG | + | chr8_3:6384017-6384036 | None:intergenic | 40.0% | |
| ! | TATTTGGCTTCAGATGCACA+TGG | - | chr8_3:6384113-6384132 | Msa1272620:CDS | 40.0% |
| TTCAGATGCACATGGAAGAT+GGG | - | chr8_3:6384121-6384140 | Msa1272620:CDS | 40.0% | |
| !! | GCAGGGAAAGTATTTGACAG+TGG | + | chr8_3:6382906-6382925 | None:intergenic | 45.0% |
| ATCCAGCTTTCTTCGCAATC+TGG | + | chr8_3:6382928-6382947 | None:intergenic | 45.0% | |
| ! | GTTGCAAAGTGATGACGTCT+CGG | + | chr8_3:6383464-6383483 | None:intergenic | 45.0% |
| CGGTGGATCATCTTCATAAG+TGG | - | chr8_3:6383496-6383515 | Msa1272620:intron | 45.0% | |
| GGTTATTGGATGGTGTAGGA+TGG | - | chr8_3:6383859-6383878 | Msa1272620:intron | 45.0% | |
| ! | TTTGATGGCAATGGTCTCCA+GGG | - | chr8_3:6383988-6384007 | Msa1272620:intron | 45.0% |
| CTTCAGATGCACATGGAAGA+TGG | - | chr8_3:6384120-6384139 | Msa1272620:CDS | 45.0% | |
| !! | GCAGGGAAAGTATTTGACAG+TGG | + | chr8_3:6382906-6382925 | None:intergenic | 45.0% |
| ATCCAGCTTTCTTCGCAATC+TGG | + | chr8_3:6382928-6382947 | None:intergenic | 45.0% | |
| ! | GTTGCAAAGTGATGACGTCT+CGG | + | chr8_3:6383464-6383483 | None:intergenic | 45.0% |
| CGGTGGATCATCTTCATAAG+TGG | - | chr8_3:6383496-6383515 | Msa1272620:intron | 45.0% | |
| GGTTATTGGATGGTGTAGGA+TGG | - | chr8_3:6383859-6383878 | Msa1272620:intron | 45.0% | |
| ! | TTTGATGGCAATGGTCTCCA+GGG | - | chr8_3:6383988-6384007 | Msa1272620:intron | 45.0% |
| CTTCAGATGCACATGGAAGA+TGG | - | chr8_3:6384120-6384139 | Msa1272620:CDS | 45.0% | |
| CAGACTCAAGCTTAATGCCC+AGG | - | chr8_3:6382300-6382319 | Msa1272620:intron | 50.0% | |
| GCTTTCTTCGCAATCTGGCA+GGG | + | chr8_3:6382923-6382942 | None:intergenic | 50.0% | |
| AGCTTTCTTCGCAATCTGGC+AGG | + | chr8_3:6382924-6382943 | None:intergenic | 50.0% | |
| TGCCAGATTGCGAAGAAAGC+TGG | - | chr8_3:6382923-6382942 | Msa1272620:intron | 50.0% | |
| ! | AGTGATGACGTCTCGGTCTA+AGG | + | chr8_3:6383457-6383476 | None:intergenic | 50.0% |
| GCAACTTACAAGTTCTGCGG+TGG | - | chr8_3:6383479-6383498 | Msa1272620:intron | 50.0% | |
| ! | GTTTGATGGCAATGGTCTCC+AGG | - | chr8_3:6383987-6384006 | Msa1272620:intron | 50.0% |
| TATCTGGACAATGGTCTCCC+TGG | + | chr8_3:6384008-6384027 | None:intergenic | 50.0% | |
| GGGAGACCATTGTCCAGATA+AGG | - | chr8_3:6384008-6384027 | Msa1272620:intron | 50.0% | |
| CAGACTCAAGCTTAATGCCC+AGG | - | chr8_3:6382300-6382319 | Msa1272620:intron | 50.0% | |
| GCTTTCTTCGCAATCTGGCA+GGG | + | chr8_3:6382923-6382942 | None:intergenic | 50.0% | |
| AGCTTTCTTCGCAATCTGGC+AGG | + | chr8_3:6382924-6382943 | None:intergenic | 50.0% | |
| TGCCAGATTGCGAAGAAAGC+TGG | - | chr8_3:6382923-6382942 | Msa1272620:intron | 50.0% | |
| ! | AGTGATGACGTCTCGGTCTA+AGG | + | chr8_3:6383457-6383476 | None:intergenic | 50.0% |
| GCAACTTACAAGTTCTGCGG+TGG | - | chr8_3:6383479-6383498 | Msa1272620:intron | 50.0% | |
| ! | GTTTGATGGCAATGGTCTCC+AGG | - | chr8_3:6383987-6384006 | Msa1272620:intron | 50.0% |
| TATCTGGACAATGGTCTCCC+TGG | + | chr8_3:6384008-6384027 | None:intergenic | 50.0% | |
| GGGAGACCATTGTCCAGATA+AGG | - | chr8_3:6384008-6384027 | Msa1272620:intron | 50.0% | |
| AGATGAGCGGACCCTACATC+AGG | + | chr8_3:6382606-6382625 | None:intergenic | 55.0% | |
| AGATGAGCGGACCCTACATC+AGG | + | chr8_3:6382606-6382625 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 6382246 | 6384182 | 6382246 | ID=Msa1272620;Name=Msa1272620 |
| chr8_3 | mRNA | 6382246 | 6384182 | 6382246 | ID=Msa1272620-mRNA-1;Parent=Msa1272620;Name=Msa1272620-mRNA-1;_AED=0.01;_eAED=0.01;_QI=25|1|1|1|1|0.66|3|0|87 |
| chr8_3 | exon | 6382246 | 6382302 | 6382246 | ID=Msa1272620-mRNA-1:exon:2312;Parent=Msa1272620-mRNA-1 |
| chr8_3 | exon | 6382399 | 6382551 | 6382399 | ID=Msa1272620-mRNA-1:exon:2311;Parent=Msa1272620-mRNA-1 |
| chr8_3 | exon | 6384107 | 6384182 | 6384107 | ID=Msa1272620-mRNA-1:exon:2310;Parent=Msa1272620-mRNA-1 |
| chr8_3 | five_prime_UTR | 6384158 | 6384182 | 6384158 | ID=Msa1272620-mRNA-1:five_prime_utr;Parent=Msa1272620-mRNA-1 |
| chr8_3 | CDS | 6384107 | 6384157 | 6384107 | ID=Msa1272620-mRNA-1:cds;Parent=Msa1272620-mRNA-1 |
| chr8_3 | CDS | 6382399 | 6382551 | 6382399 | ID=Msa1272620-mRNA-1:cds;Parent=Msa1272620-mRNA-1 |
| chr8_3 | CDS | 6382246 | 6382302 | 6382246 | ID=Msa1272620-mRNA-1:cds;Parent=Msa1272620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
