AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0096980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0096980 MtrunA17_Chr1g0153151 95.000 180 5 2 1 176 1 180 5.19e-126 351
Msa0096980 MtrunA17_Chr3g0134161 60.000 175 52 5 3 175 13 171 3.24e-64 195
Msa0096980 MtrunA17_Chr5g0401871 50.000 174 59 4 21 174 9 174 5.05e-50 159
Msa0096980 MtrunA17_Chr5g0399441 69.492 59 18 0 41 99 28 86 1.56e-24 94.4
Msa0096980 MtrunA17_Chr4g0055951 67.797 59 19 0 41 99 74 132 3.38e-24 95.1
Msa0096980 MtrunA17_Chr2g0331231 66.102 59 20 0 41 99 41 99 8.56e-24 92.8
Msa0096980 MtrunA17_Chr6g0486701 69.492 59 18 0 41 99 44 102 1.25e-23 92.8
Msa0096980 MtrunA17_Chr3g0140161 66.102 59 20 0 41 99 43 101 1.34e-23 92.0
Msa0096980 MtrunA17_Chr1g0150671 40.000 145 70 3 20 162 34 163 1.36e-23 94.0
Msa0096980 MtrunA17_Chr1g0150661 53.846 78 36 0 20 97 14 91 1.42e-23 92.8
Msa0096980 MtrunA17_Chr1g0150691 67.797 59 19 0 39 97 20 78 1.97e-23 92.4
Msa0096980 MtrunA17_Chr7g0275841 65.517 58 20 0 41 98 28 85 2.25e-23 90.9
Msa0096980 MtrunA17_Chr8g0390091 66.102 59 20 0 41 99 37 95 4.93e-23 91.7
Msa0096980 MtrunA17_Chr5g0396301 48.000 100 43 3 39 135 16 109 5.74e-23 89.7
Msa0096980 MtrunA17_Chr7g0232261 55.422 83 29 1 25 99 37 119 1.75e-22 90.1
Msa0096980 MtrunA17_Chr1g0150631 48.913 92 44 1 9 97 3 94 1.95e-22 90.1
Msa0096980 MtrunA17_Chr2g0301171 64.912 57 20 0 41 97 19 75 1.26e-21 87.0
Msa0096980 MtrunA17_Chr2g0301181 54.167 72 33 0 26 97 4 75 2.48e-21 87.0
Msa0096980 MtrunA17_Chr8g0334801 63.333 60 22 0 41 100 52 111 5.77e-21 85.5
Msa0096980 MtrunA17_Chr5g0425561 46.535 101 43 3 36 136 168 257 8.64e-21 87.8
Msa0096980 MtrunA17_Chr7g0221501 43.956 91 48 1 31 118 41 131 9.17e-21 84.3
Msa0096980 MtrunA17_Chr8g0383591 46.739 92 46 2 21 111 127 216 1.17e-20 86.7
Msa0096980 MtrunA17_Chr8g0340311 61.017 59 23 0 41 99 47 105 1.58e-20 84.3
Msa0096980 MtrunA17_Chr5g0437671 62.712 59 22 0 41 99 85 143 1.70e-20 87.4
Msa0096980 MtrunA17_Chr2g0323171 59.322 59 24 0 41 99 65 123 1.95e-20 83.6
Msa0096980 MtrunA17_Chr3g0136551 58.730 63 26 0 34 96 58 120 2.01e-20 85.5
Msa0096980 MtrunA17_Chr8g0346741 60.345 58 23 0 41 98 39 96 2.55e-20 83.2
Msa0096980 MtrunA17_Chr2g0301191 64.912 57 20 0 41 97 19 75 2.73e-20 84.0
Msa0096980 MtrunA17_Chr7g0257911 62.712 59 22 0 41 99 31 89 2.99e-20 85.1
Msa0096980 MtrunA17_Chr4g0044871 59.649 57 23 0 41 97 96 152 3.28e-20 84.0
Msa0096980 MtrunA17_Chr1g0203861 55.405 74 32 1 30 102 32 105 3.95e-20 83.2
Msa0096980 MtrunA17_Chr1g0196781 59.016 61 25 0 39 99 150 210 3.98e-20 85.5
Msa0096980 MtrunA17_Chr3g0099871 41.732 127 63 3 41 167 27 142 4.25e-20 83.6
Msa0096980 MtrunA17_Chr4g0055781 65.517 58 19 1 41 97 102 159 6.93e-20 83.6
Msa0096980 MtrunA17_Chr4g0044911 59.649 57 23 0 41 97 96 152 8.01e-20 83.2
Msa0096980 MtrunA17_Chr3g0115631 48.315 89 40 1 11 99 126 208 9.01e-20 84.7
Msa0096980 MtrunA17_Chr4g0044881 59.649 57 23 0 41 97 114 170 1.34e-19 82.8
Msa0096980 MtrunA17_Chr7g0221471 51.471 68 33 0 31 98 41 108 1.52e-19 81.3
Msa0096980 MtrunA17_Chr4g0044901 59.649 57 23 0 41 97 96 152 1.65e-19 82.4
Msa0096980 MtrunA17_Chr4g0017851 50.746 67 33 0 32 98 109 175 2.06e-19 83.2
Msa0096980 MtrunA17_Chr4g0055801 63.793 58 20 1 41 97 154 211 2.71e-19 82.8
Msa0096980 MtrunA17_Chr4g0023411 55.932 59 26 0 41 99 65 123 3.58e-19 80.5
Msa0096980 MtrunA17_Chr2g0324131 51.250 80 35 1 26 101 199 278 3.67e-19 83.6
Msa0096980 MtrunA17_Chr7g0250711 48.810 84 39 2 24 103 40 123 4.46e-19 80.5
Msa0096980 MtrunA17_Chr1g0170531 55.224 67 29 1 41 106 89 155 6.55e-19 80.5
Msa0096980 MtrunA17_Chr2g0295421 43.333 90 48 1 9 98 67 153 6.63e-19 81.3
Msa0096980 MtrunA17_Chr8g0382491 56.061 66 29 0 36 101 108 173 6.85e-19 81.6
Msa0096980 MtrunA17_Chr1g0184081 51.351 74 35 1 25 97 5 78 1.06e-18 78.2
Msa0096980 MtrunA17_Chr6g0473931 40.367 109 61 2 30 134 21 129 1.48e-18 79.0
Msa0096980 MtrunA17_Chr7g0250731 40.196 102 56 2 12 108 28 129 1.80e-18 79.0
Msa0096980 MtrunA17_Chr7g0225131 48.315 89 37 2 9 97 3 82 2.05e-18 75.9
Msa0096980 MtrunA17_Chr3g0136541 62.963 54 20 0 43 96 42 95 2.10e-18 79.3
Msa0096980 MtrunA17_Chr2g0334031 45.349 86 45 1 13 98 91 174 3.54e-18 80.5
Msa0096980 MtrunA17_Chr8g0375031 55.172 58 26 0 39 96 123 180 3.78e-18 78.6
Msa0096980 MtrunA17_Chr5g0396191 49.474 95 40 1 41 135 11 97 6.02e-18 77.0
Msa0096980 MtrunA17_Chr1g0195151 53.623 69 30 1 29 97 67 133 1.04e-17 78.6
Msa0096980 MtrunA17_Chr7g0265851 61.404 57 22 0 41 97 24 80 1.13e-17 76.6
Msa0096980 MtrunA17_Chr7g0250721 54.545 66 29 1 39 103 59 124 1.37e-17 76.6
Msa0096980 MtrunA17_Chr8g0335311 53.731 67 30 1 41 106 96 162 1.56e-17 76.3
Msa0096980 MtrunA17_Chr8g0344961 52.000 75 35 1 25 98 107 181 1.56e-17 79.0
Msa0096980 MtrunA17_Chr5g0396181 51.136 88 35 1 41 128 21 100 2.14e-17 75.9
Msa0096980 MtrunA17_Chr1g0189941 48.718 78 28 1 31 96 2 79 2.26e-17 75.1
Msa0096980 MtrunA17_Chr1g0186671 52.857 70 32 1 29 97 7 76 2.31e-17 74.3
Msa0096980 MtrunA17_Chr1g0146191 52.439 82 37 1 20 99 24 105 2.60e-17 77.0
Msa0096980 MtrunA17_Chr2g0282651 51.429 70 32 1 28 97 59 126 2.79e-17 76.6
Msa0096980 MtrunA17_Chr1g0196871 56.897 58 24 1 41 97 16 73 2.98e-17 73.2
Msa0096980 MtrunA17_Chr6g0474001 38.739 111 64 2 30 136 42 152 3.06e-17 76.6
Msa0096980 MtrunA17_Chr1g0186731 48.718 78 37 2 21 97 3 78 3.46e-17 73.9
Msa0096980 MtrunA17_Chr2g0283171 43.333 90 46 2 13 97 31 120 3.61e-17 74.3
Msa0096980 MtrunA17_Chr6g0486711 44.554 101 45 1 10 99 7 107 4.22e-17 75.9
Msa0096980 MtrunA17_Chr6g0473941 51.351 74 35 1 30 102 21 94 4.92e-17 75.1
Msa0096980 MtrunA17_Chr5g0437371 60.714 56 22 0 41 96 66 121 5.28e-17 77.0
Msa0096980 MtrunA17_Chr5g0396911 46.154 78 38 1 23 96 90 167 6.08e-17 76.6
Msa0096980 MtrunA17_Chr2g0283181 54.286 70 30 2 30 97 137 206 7.03e-17 76.3
Msa0096980 MtrunA17_Chr4g0002631 56.140 57 25 0 41 97 8 64 7.04e-17 74.3
Msa0096980 MtrunA17_Chr3g0126321 55.172 58 26 0 39 96 111 168 8.49e-17 76.6
Msa0096980 MtrunA17_Chr6g0473741 52.857 70 32 1 30 98 54 123 9.71e-17 74.7
Msa0096980 MtrunA17_Chr6g0473971 47.500 80 41 1 24 102 36 115 9.89e-17 75.1
Msa0096980 MtrunA17_Chr8g0335321 55.556 63 27 1 39 100 94 156 1.03e-16 74.3
Msa0096980 MtrunA17_Chr6g0473781 42.157 102 50 2 30 130 45 138 1.40e-16 74.3
Msa0096980 MtrunA17_Chr4g0046161 46.512 86 43 2 13 97 31 114 1.40e-16 72.0
Msa0096980 MtrunA17_Chr8g0335331 54.688 64 28 1 41 103 125 188 1.45e-16 73.9
Msa0096980 MtrunA17_Chr1g0158971 55.357 56 25 0 41 96 115 170 1.45e-16 75.9
Msa0096980 MtrunA17_Chr6g0473981 35.897 117 71 2 24 136 36 152 2.35e-16 73.9
Msa0096980 MtrunA17_Chr2g0316931 53.333 60 28 0 41 100 31 90 3.01e-16 73.2
Msa0096980 MtrunA17_Chr5g0396171 47.761 67 35 0 43 109 26 92 3.06e-16 70.5
Msa0096980 MtrunA17_Chr4g0063751 50.847 59 29 0 39 97 5 63 4.52e-16 72.8
Msa0096980 MtrunA17_Chr6g0473881 52.857 70 32 1 30 98 98 167 4.70e-16 73.9
Msa0096980 MtrunA17_Chr7g0261151 54.839 62 27 1 41 101 20 81 5.58e-16 70.9
Msa0096980 MtrunA17_Chr6g0473961 33.600 125 79 2 16 136 28 152 7.72e-16 72.0
Msa0096980 MtrunA17_Chr5g0424051 66.667 60 19 1 39 97 94 153 7.94e-16 73.2
Msa0096980 MtrunA17_Chr2g0282621 56.140 57 25 0 41 97 15 71 8.31e-16 71.2
Msa0096980 MtrunA17_Chr3g0114761 63.934 61 20 1 39 97 23 83 8.45e-16 72.0
Msa0096980 MtrunA17_Chr2g0321071 45.652 92 40 3 41 130 47 130 9.91e-16 72.0
Msa0096980 MtrunA17_Chr4g0003421 50.847 59 29 0 39 97 38 96 1.17e-15 72.0
Msa0096980 MtrunA17_Chr6g0473861 53.448 58 27 0 41 98 63 120 1.29e-15 72.4
Msa0096980 MtrunA17_Chr7g0243431 53.968 63 22 1 41 96 78 140 1.34e-15 73.6
Msa0096980 MtrunA17_Chr7g0261101 56.897 58 24 1 41 97 20 77 1.43e-15 69.7
Msa0096980 MtrunA17_Chr2g0297331 54.839 62 27 1 41 101 14 75 1.68e-15 69.3
Msa0096980 MtrunA17_Chr3g0137174 54.386 57 26 0 41 97 8 64 1.70e-15 70.9
Msa0096980 MtrunA17_Chr4g0057241 61.404 57 21 1 41 97 15 70 2.02e-15 70.1
Msa0096980 MtrunA17_Chr6g0473771 51.471 68 32 1 32 98 33 100 2.95e-15 68.2
Msa0096980 MtrunA17_Chr2g0333011 49.153 59 30 0 39 97 5 63 3.04e-15 69.7
Msa0096980 MtrunA17_Chr4g0026881 50.000 64 31 1 41 103 97 160 3.07e-15 70.9
Msa0096980 MtrunA17_Chr8g0378811 45.000 80 41 1 20 96 31 110 6.10e-15 70.5
Msa0096980 MtrunA17_Chr5g0398091 54.688 64 23 1 41 98 54 117 1.47e-14 68.9
Msa0096980 MtrunA17_Chr5g0438801 52.632 57 27 0 41 97 51 107 2.49e-14 68.9
Msa0096980 MtrunA17_Chr8g0350701 45.833 72 39 0 32 103 18 89 2.55e-14 69.3
Msa0096980 MtrunA17_Chr5g0398061 54.688 64 23 1 41 98 49 112 2.70e-14 68.2
Msa0096980 MtrunA17_Chr5g0432821 39.241 79 48 0 41 119 124 202 2.92e-14 68.9
Msa0096980 MtrunA17_Chr3g0129421 57.576 66 28 0 33 98 162 227 3.45e-14 69.3
Msa0096980 MtrunA17_Chr5g0398081 41.905 105 46 3 41 139 49 144 3.62e-14 67.8
Msa0096980 MtrunA17_Chr5g0438831 50.877 57 28 0 41 97 46 102 3.64e-14 68.6
Msa0096980 MtrunA17_Chr1g0170471 56.000 50 21 1 49 97 91 140 3.92e-14 66.6
Msa0096980 MtrunA17_Chr4g0055761 50.000 70 34 1 29 97 133 202 4.46e-14 68.2
Msa0096980 MtrunA17_Chr4g0026931 50.794 63 30 1 42 103 132 194 4.96e-14 68.2
Msa0096980 MtrunA17_Chr8g0345531 40.260 77 42 1 6 82 85 157 5.95e-14 68.6
Msa0096980 MtrunA17_Chr8g0387801 53.448 58 27 0 39 96 105 162 6.85e-14 68.2
Msa0096980 MtrunA17_Chr3g0142081 47.561 82 43 0 29 110 27 108 7.29e-14 67.0
Msa0096980 MtrunA17_Chr8g0367911 50.000 56 28 0 41 96 44 99 1.13e-13 67.4
Msa0096980 MtrunA17_Chr3g0131601 58.621 58 24 0 41 98 76 133 1.22e-13 67.0
Msa0096980 MtrunA17_Chr1g0183981 50.847 59 28 1 39 96 73 131 1.64e-13 65.9
Msa0096980 MtrunA17_Chr4g0042761 46.269 67 36 0 30 96 37 103 2.00e-13 67.0
Msa0096980 MtrunA17_Chr1g0186681 50.847 59 27 1 41 97 19 77 2.16e-13 63.9
Msa0096980 MtrunA17_Chr1g0184071 45.333 75 40 1 23 96 51 125 2.45e-13 64.7
Msa0096980 MtrunA17_Chr4g0057231 45.556 90 45 3 13 98 15 104 2.60e-13 63.9
Msa0096980 MtrunA17_Chr7g0217991 46.032 63 34 0 34 96 35 97 4.69e-13 66.2
Msa0096980 MtrunA17_Chr1g0155751 52.113 71 34 0 29 99 27 97 6.25e-13 65.1
Msa0096980 MtrunA17_Chr1g0184061 49.153 59 29 1 39 96 75 133 6.38e-13 64.3
Msa0096980 MtrunA17_Chr8g0345551 41.558 77 42 1 6 82 85 158 8.30e-13 65.5
Msa0096980 MtrunA17_Chr7g0261181 59.375 64 25 1 35 97 7 70 9.02e-13 62.0
Msa0096980 MtrunA17_Chr4g0062551 39.506 81 47 1 19 97 29 109 1.08e-12 62.0
Msa0096980 MtrunA17_Chr1g0149331 50.704 71 33 1 41 111 7 75 1.22e-12 63.2
Msa0096980 MtrunA17_Chr2g0286161 37.805 82 47 2 29 110 39 116 1.44e-12 64.3
Msa0096980 MtrunA17_Chr7g0253424 38.095 84 51 1 13 96 12 94 1.72e-12 63.9
Msa0096980 MtrunA17_Chr6g0473791 41.667 84 43 2 30 112 45 123 1.75e-12 61.6
Msa0096980 MtrunA17_Chr6g0453661 43.548 62 35 0 35 96 32 93 1.88e-12 64.3
Msa0096980 MtrunA17_Chr5g0412641 50.000 56 28 0 41 96 46 101 2.70e-12 63.9
Msa0096980 MtrunA17_Chr4g0062161 39.506 81 47 1 19 97 29 109 3.00e-12 62.4
Msa0096980 MtrunA17_Chr5g0396741 48.421 95 47 1 39 133 115 207 3.59e-12 63.2
Msa0096980 MtrunA17_Chr6g0461941 52.055 73 31 1 28 100 11 79 3.61e-12 62.4
Msa0096980 MtrunA17_Chr1g0184031 49.123 57 28 1 41 96 84 140 4.16e-12 62.4
Msa0096980 MtrunA17_Chr1g0183961 60.345 58 22 1 41 97 27 84 1.24e-11 59.7
Msa0096980 MtrunA17_Chr4g0066931 39.706 68 40 1 29 96 42 108 1.94e-11 61.2
Msa0096980 MtrunA17_Chr1g0184011 49.091 55 27 1 43 96 86 140 1.98e-11 60.5
Msa0096980 MtrunA17_Chr1g0183931 47.945 73 37 1 39 110 99 171 2.31e-11 60.5
Msa0096980 MtrunA17_Chr6g0461271 40.845 71 42 0 26 96 18 88 3.22e-11 60.5
Msa0096980 MtrunA17_Chr1g0203831 61.404 57 21 1 41 97 57 112 3.90e-11 59.3
Msa0096980 MtrunA17_Chr5g0423811 44.776 67 34 1 19 82 63 129 4.26e-11 60.1
Msa0096980 MtrunA17_Chr3g0137831 50.725 69 32 1 39 107 6 72 4.94e-11 58.9
Msa0096980 MtrunA17_Chr1g0205961 47.059 51 27 0 32 82 106 156 8.76e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0096980 AT3G50260.1 58.219 146 47 3 31 176 15 146 5.03e-51 161
Msa0096980 AT2G23340.1 54.667 150 62 2 30 175 17 164 6.28e-51 161
Msa0096980 AT1G46768.1 57.246 138 46 2 39 176 29 153 2.67e-49 157
Msa0096980 AT1G46768.2 57.246 138 46 2 39 176 29 153 2.67e-49 157
Msa0096980 AT5G67190.1 64.706 119 33 2 35 153 15 124 9.22e-48 154
Msa0096980 AT1G46768.3 66.667 108 34 1 39 146 29 134 1.68e-46 149
Msa0096980 AT4G36900.1 49.405 168 57 3 35 174 24 191 2.57e-45 148
Msa0096980 AT4G06746.1 74.227 97 22 1 39 135 34 127 2.33e-44 144
Msa0096980 AT1G71450.1 49.000 100 43 1 24 123 7 98 6.19e-26 98.2
Msa0096980 AT4G16750.1 55.696 79 31 1 23 101 26 100 6.51e-26 98.2
Msa0096980 AT1G21910.1 52.083 96 33 3 41 130 50 138 5.58e-25 97.1
Msa0096980 AT2G35700.1 62.295 61 23 0 41 101 45 105 3.24e-23 91.3
Msa0096980 AT5G11590.1 66.102 59 20 0 41 99 51 109 4.90e-23 92.0
Msa0096980 AT4G32800.1 60.294 68 27 0 32 99 10 77 5.88e-23 91.3
Msa0096980 AT1G74930.1 60.811 74 24 2 29 97 4 77 6.14e-23 90.9
Msa0096980 AT3G16280.2 62.712 59 22 0 41 99 79 137 7.10e-23 92.0
Msa0096980 AT3G16280.1 62.712 59 22 0 41 99 61 119 7.31e-23 91.7
Msa0096980 AT1G19210.1 57.971 69 28 1 31 98 1 69 2.50e-22 89.0
Msa0096980 AT2G20880.1 51.111 90 42 1 37 124 183 272 3.71e-22 91.3
Msa0096980 AT3G60490.1 66.102 59 20 0 41 99 71 129 4.11e-22 90.1
Msa0096980 AT2G33710.2 40.000 110 52 2 3 98 18 127 4.20e-22 89.4
Msa0096980 AT2G33710.1 40.000 110 52 2 3 98 18 127 5.06e-22 89.0
Msa0096980 AT2G44940.1 64.407 59 21 0 41 99 100 158 5.67e-22 90.5
Msa0096980 AT1G01250.1 65.517 58 20 0 41 98 45 102 7.71e-22 87.8
Msa0096980 AT2G25820.1 66.102 59 20 0 41 99 26 84 1.02e-21 88.2
Msa0096980 AT5G25810.1 51.250 80 39 0 20 99 15 94 2.80e-21 87.0
Msa0096980 AT2G22200.1 48.810 84 43 0 41 124 71 154 3.20e-21 87.8
Msa0096980 AT5G21960.1 63.793 58 21 0 41 98 7 64 5.63e-21 86.3
Msa0096980 AT4G28140.1 62.903 62 23 0 37 98 139 200 1.09e-20 87.0
Msa0096980 AT1G71520.1 45.455 99 41 2 41 135 14 103 1.29e-20 83.2
Msa0096980 AT1G36060.1 46.602 103 42 2 36 136 138 229 1.35e-20 87.0
Msa0096980 AT2G47520.1 50.588 85 36 2 32 116 43 121 1.47e-20 84.0
Msa0096980 AT4G13620.1 62.295 61 23 0 39 99 230 290 2.84e-20 87.0
Msa0096980 AT4G39780.1 54.930 71 32 0 33 103 85 155 3.28e-20 85.1
Msa0096980 AT1G77640.1 50.000 96 46 1 35 130 37 130 5.35e-20 84.3
Msa0096980 AT1G22190.1 47.727 88 41 1 19 106 66 148 6.49e-20 84.3
Msa0096980 AT5G65130.1 54.795 73 30 1 31 100 98 170 7.83e-20 84.3
Msa0096980 AT5G65130.2 54.795 73 30 1 31 100 100 172 8.05e-20 84.3
Msa0096980 AT5G47230.1 67.241 58 18 1 41 97 156 213 9.89e-20 84.3
Msa0096980 AT4G31060.1 53.425 73 33 1 25 97 12 83 1.55e-19 81.6
Msa0096980 AT1G75490.1 60.000 60 24 0 41 100 42 101 1.55e-19 82.0
Msa0096980 AT3G57600.1 54.930 71 32 0 29 99 16 86 1.72e-19 83.6
Msa0096980 AT4G27950.1 48.276 87 40 1 39 120 116 202 2.13e-19 84.0
Msa0096980 AT1G22810.1 45.361 97 42 2 41 135 14 101 2.23e-19 80.1
Msa0096980 AT1G33760.1 70.000 60 18 0 41 100 20 79 5.12e-19 80.1
Msa0096980 AT1G78080.1 55.714 70 31 0 30 99 141 210 7.12e-19 82.4
Msa0096980 AT2G40340.2 49.296 71 36 0 29 99 2 72 8.38e-19 81.6
Msa0096980 AT2G40340.5 49.296 71 36 0 29 99 2 72 8.38e-19 81.6
Msa0096980 AT2G40340.4 49.296 71 36 0 29 99 2 72 8.38e-19 81.6
Msa0096980 AT4G11140.1 57.895 57 24 0 41 97 87 143 9.47e-19 81.6
Msa0096980 AT5G05410.2 61.404 57 22 0 41 97 79 135 9.83e-19 81.6
Msa0096980 AT2G44840.1 58.209 67 26 2 35 100 87 152 1.05e-18 80.5
Msa0096980 AT5G05410.1 61.404 57 22 0 41 97 79 135 1.10e-18 82.0
Msa0096980 AT4G25480.1 55.714 70 30 1 30 98 39 108 1.46e-18 79.7
Msa0096980 AT5G61600.1 63.793 58 20 1 41 97 88 145 1.59e-18 80.1
Msa0096980 AT1G77200.1 61.765 68 26 0 32 99 34 101 1.62e-18 80.1
Msa0096980 AT4G25490.1 57.353 68 28 1 30 96 36 103 1.63e-18 79.7
Msa0096980 AT5G51990.1 58.824 68 27 1 30 96 42 109 1.72e-18 79.7
Msa0096980 AT5G53290.1 44.086 93 50 1 4 96 90 180 1.94e-18 81.6
Msa0096980 AT5G51190.1 60.345 58 22 1 41 97 72 129 2.16e-18 79.3
Msa0096980 AT4G25470.1 55.714 70 30 1 30 98 39 108 2.17e-18 79.3
Msa0096980 AT2G40340.1 49.296 71 36 0 29 99 60 130 3.01e-18 80.9
Msa0096980 AT5G07580.1 62.069 58 21 1 41 97 110 167 3.04e-18 78.6
Msa0096980 AT2G40340.6 49.296 71 36 0 29 99 67 137 3.18e-18 80.9
Msa0096980 AT2G40340.3 49.296 71 36 0 29 99 60 130 3.20e-18 80.1
Msa0096980 AT5G61890.1 56.897 58 25 0 41 98 90 147 3.21e-18 79.3
Msa0096980 AT3G20310.1 59.649 57 23 0 41 97 27 83 3.21e-18 79.3
Msa0096980 AT4G17490.1 62.069 58 21 1 41 97 137 194 3.63e-18 79.7
Msa0096980 AT5G13330.1 56.897 58 25 0 41 98 39 96 4.02e-18 78.6
Msa0096980 AT3G16770.1 55.224 67 30 0 33 99 71 137 4.16e-18 79.3
Msa0096980 AT3G15210.1 53.030 66 30 1 41 105 25 90 7.16e-18 78.2
Msa0096980 AT1G44830.1 66.667 63 20 1 38 99 32 94 1.09e-17 77.4
Msa0096980 AT3G61630.1 56.897 58 25 0 39 96 103 160 1.28e-17 79.0
Msa0096980 AT1G72360.2 47.368 76 40 0 22 97 57 132 2.20e-17 77.4
Msa0096980 AT1G03800.1 48.649 74 36 1 28 101 42 113 2.41e-17 77.0
Msa0096980 AT1G28360.1 53.968 63 29 0 41 103 12 74 3.58e-17 75.5
Msa0096980 AT5G18450.1 51.471 68 33 0 29 96 22 89 4.45e-17 77.4
Msa0096980 AT4G23750.2 58.621 58 24 0 39 96 120 177 4.70e-17 77.4
Msa0096980 AT4G23750.1 58.621 58 24 0 39 96 120 177 4.70e-17 77.4
Msa0096980 AT5G25390.2 50.820 61 30 0 39 99 5 65 4.76e-17 75.1
Msa0096980 AT1G28370.1 56.140 57 25 0 41 97 20 76 9.07e-17 73.9
Msa0096980 AT5G44210.1 43.210 81 45 1 17 97 10 89 1.04e-16 74.7
Msa0096980 AT1G72360.1 53.968 63 29 0 35 97 19 81 1.05e-16 74.7
Msa0096980 AT1G28370.2 56.140 57 25 0 41 97 58 114 1.33e-16 74.3
Msa0096980 AT1G15360.1 54.237 59 27 0 39 97 5 63 1.57e-16 73.9
Msa0096980 AT1G15360.2 54.237 59 27 0 39 97 5 63 1.57e-16 73.9
Msa0096980 AT1G72360.3 53.968 63 29 0 35 97 68 130 1.59e-16 75.1
Msa0096980 AT2G36450.1 53.521 71 31 2 29 97 2 72 2.47e-16 73.2
Msa0096980 AT5G25190.1 54.386 57 26 0 41 97 8 64 3.47e-16 72.8
Msa0096980 AT3G11020.1 55.172 58 26 0 41 98 78 135 5.52e-16 74.3
Msa0096980 AT1G63030.2 37.391 115 63 2 17 130 5 111 7.94e-16 71.6
Msa0096980 AT1G63030.1 37.391 115 63 2 17 130 5 111 7.94e-16 71.6
Msa0096980 AT1G50640.1 54.386 57 26 0 41 97 28 84 1.00e-15 72.4
Msa0096980 AT1G12610.1 62.500 56 21 0 41 96 30 85 1.30e-15 71.6
Msa0096980 AT5G47220.1 56.667 60 25 1 39 97 115 174 1.60e-15 72.0
Msa0096980 AT3G23230.1 56.897 58 24 1 41 97 20 77 1.74e-15 69.7
Msa0096980 AT5G43410.1 55.172 58 25 1 41 97 15 72 1.89e-15 69.7
Msa0096980 AT2G40350.2 41.975 81 47 0 19 99 52 132 1.93e-15 70.5
Msa0096980 AT2G40350.1 41.975 81 47 0 19 99 45 125 2.21e-15 70.1
Msa0096980 AT2G38340.1 49.351 77 31 1 41 109 70 146 5.22e-15 70.9
Msa0096980 AT4G17500.1 43.182 88 48 2 11 97 119 205 1.21e-14 70.1
Msa0096980 AT5G25390.1 49.180 61 28 1 39 99 5 62 1.87e-14 68.2
Msa0096980 AT3G23240.1 50.794 63 30 1 35 96 76 138 1.88e-14 68.9
Msa0096980 AT1G43160.1 61.667 60 23 0 39 98 59 118 2.40e-14 68.2
Msa0096980 AT2G46310.1 47.541 61 32 0 36 96 94 154 2.74e-14 69.3
Msa0096980 AT1G71130.1 39.450 109 50 3 5 108 52 149 6.73e-14 66.2
Msa0096980 AT5G52020.1 60.656 61 23 1 41 101 65 124 1.04e-13 67.0
Msa0096980 AT5G64750.1 58.000 50 21 0 49 98 193 242 1.20e-13 68.2
Msa0096980 AT5G50080.2 50.000 86 34 2 20 98 60 143 2.51e-13 65.9
Msa0096980 AT5G07310.1 58.621 58 24 0 41 98 92 149 3.22e-13 66.2
Msa0096980 AT5G50080.1 50.000 86 34 2 20 98 51 134 3.53e-13 65.5
Msa0096980 AT2G31230.1 41.892 74 42 1 39 111 84 157 6.05e-13 65.1
Msa0096980 AT2G40220.1 64.286 56 20 0 41 96 55 110 1.50e-12 64.7
Msa0096980 AT5G19790.1 40.260 77 46 0 20 96 1 77 1.52e-12 64.3
Msa0096980 AT1G64380.1 60.563 71 26 1 36 106 131 199 2.59e-12 64.3
Msa0096980 AT4G34410.1 57.895 57 24 0 41 97 136 192 2.62e-12 63.5
Msa0096980 AT5G61590.1 63.793 58 20 1 41 97 107 164 4.72e-12 62.0
Msa0096980 AT1G12980.1 50.000 56 28 0 41 96 57 112 5.38e-12 63.2
Msa0096980 AT1G22985.1 50.820 61 27 1 39 96 73 133 5.75e-12 61.2
Msa0096980 AT5G18560.1 39.706 68 41 0 29 96 43 110 1.00e-11 62.4
Msa0096980 AT3G14230.3 35.606 132 78 2 41 170 123 249 1.11e-11 62.4
Msa0096980 AT3G14230.2 35.606 132 78 2 41 170 124 250 1.13e-11 62.4
Msa0096980 AT3G14230.1 35.606 132 78 2 41 170 128 254 1.25e-11 62.4
Msa0096980 AT1G12890.1 40.541 74 44 0 23 96 3 76 1.31e-11 61.2
Msa0096980 AT1G53910.1 60.345 58 23 0 41 98 125 182 1.69e-11 62.0
Msa0096980 AT1G53910.2 60.345 58 23 0 41 98 125 182 1.69e-11 62.0
Msa0096980 AT1G53910.3 60.345 58 23 0 41 98 123 180 1.74e-11 62.0
Msa0096980 AT1G68550.1 61.538 39 15 0 43 81 115 153 2.03e-11 61.6
Msa0096980 AT1G68550.2 61.538 39 15 0 43 81 115 153 2.03e-11 61.6
Msa0096980 AT1G24590.1 50.000 56 28 0 41 96 58 113 2.10e-11 61.6
Msa0096980 AT5G13910.1 40.541 74 43 1 24 96 2 75 4.53e-11 59.7
Msa0096980 AT1G28160.1 48.214 56 29 0 41 96 39 94 4.89e-11 60.1

Find 29 sgRNAs with CRISPR-Local

Find 32 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAACAATCTTCAGGTTT+TGG 0.213321 1_3:+2732050 None:intergenic
CAAACAAGAGATCAAGAATT+TGG 0.229206 1_3:-2732385 Msa0096980:CDS
CTCATCCTTATTCCTCTATA+TGG 0.230567 1_3:+2732443 None:intergenic
ACAACAGTTCTGGAAAATTA+AGG 0.258743 1_3:+2732282 None:intergenic
TTTGAGAGAAGAAGTAGAAT+TGG 0.281114 1_3:+2732091 None:intergenic
ATTGGAGTGAACATGATTAT+TGG 0.287490 1_3:+2732109 None:intergenic
CAAATTCTTGATCTCTTGTT+TGG 0.310510 1_3:+2732386 None:intergenic
TTGCATGATCAACAATCTTC+AGG 0.324330 1_3:+2732044 None:intergenic
TGGTCTTTGAACAACAGTTC+TGG 0.346041 1_3:+2732272 None:intergenic
TGAAACCATATAGAGGAATA+AGG 0.368718 1_3:-2732448 Msa0096980:CDS
TTTGTGATCTACAGGGATAT+TGG 0.377358 1_3:+2732514 None:intergenic
AGGGTATGGAAGAAGAAGAT+AGG 0.393416 1_3:-2732565 None:intergenic
ATATGTCGGCTGATTCAATA+AGG 0.409220 1_3:-2732214 Msa0096980:CDS
TAAGCACGTGCTGCAGCAAT+AGG 0.431148 1_3:+2732344 None:intergenic
AAGAGATCAAGAATTTGGTT+AGG 0.437115 1_3:-2732380 Msa0096980:CDS
GAGGAATAAGGATGAGAAAG+TGG 0.441232 1_3:-2732436 Msa0096980:CDS
TTTGGAAACTCATTCAAGTC+AGG 0.457299 1_3:+2732068 None:intergenic
GATGAGAAAGTGGGGTAAGT+GGG 0.457552 1_3:-2732426 Msa0096980:CDS
AGGAATAAGGATGAGAAAGT+GGG 0.476638 1_3:-2732435 Msa0096980:CDS
GGATGAGAAAGTGGGGTAAG+TGG 0.483953 1_3:-2732427 Msa0096980:CDS
GGGTATGGAAGAAGAAGATA+GGG 0.511618 1_3:-2732564 None:intergenic
AAAGCTATGAAACCATATAG+AGG 0.522157 1_3:-2732455 Msa0096980:CDS
GAGAAAGTGGGGTAAGTGGG+TGG 0.554706 1_3:-2732423 Msa0096980:CDS
GGAAAATTAAGGTTTGCAGA+AGG 0.561895 1_3:+2732293 None:intergenic
AAAATAACAATAACAATAAG+GGG 0.576363 1_3:-2732493 Msa0096980:CDS
GGAATAAGGATGAGAAAGTG+GGG 0.610907 1_3:-2732434 Msa0096980:CDS
ACAACAACGTGGGAATATGT+CGG 0.633780 1_3:-2732228 Msa0096980:CDS
AAGAAAATCTACAACAACGT+GGG 0.641819 1_3:-2732238 Msa0096980:CDS
GAAGAAAATCTACAACAACG+TGG 0.766530 1_3:-2732239 Msa0096980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAACAATAACAATAA+GGG - chr1_3:2732118-2732137 Msa0096980:CDS 10.0%
!! CAAAAATAACAATAACAATA+AGG - chr1_3:2732117-2732136 Msa0096980:CDS 15.0%
!! AAAATAACAATAACAATAAG+GGG - chr1_3:2732119-2732138 Msa0096980:CDS 15.0%
!!! TGTTATTTTTGTGATCTACA+GGG + chr1_3:2732108-2732127 None:intergenic 25.0%
!!! TTGTTATTTTTGTGATCTAC+AGG + chr1_3:2732109-2732128 None:intergenic 25.0%
AAAGCTATGAAACCATATAG+AGG - chr1_3:2732157-2732176 Msa0096980:CDS 30.0%
TGAAACCATATAGAGGAATA+AGG - chr1_3:2732164-2732183 Msa0096980:CDS 30.0%
CAAATTCTTGATCTCTTGTT+TGG + chr1_3:2732229-2732248 None:intergenic 30.0%
CAAACAAGAGATCAAGAATT+TGG - chr1_3:2732227-2732246 Msa0096980:CDS 30.0%
AAGAGATCAAGAATTTGGTT+AGG - chr1_3:2732232-2732251 Msa0096980:CDS 30.0%
!! ACAACAGTTCTGGAAAATTA+AGG + chr1_3:2732333-2732352 None:intergenic 30.0%
! GATTTTCTTCATCTTCTTGT+TGG + chr1_3:2732363-2732382 None:intergenic 30.0%
AAGAAAATCTACAACAACGT+GGG - chr1_3:2732374-2732393 Msa0096980:CDS 30.0%
ATTGGAGTGAACATGATTAT+TGG + chr1_3:2732506-2732525 None:intergenic 30.0%
TTTGAGAGAAGAAGTAGAAT+TGG + chr1_3:2732524-2732543 None:intergenic 30.0%
TTTGTGATCTACAGGGATAT+TGG + chr1_3:2732101-2732120 None:intergenic 35.0%
CTCATCCTTATTCCTCTATA+TGG + chr1_3:2732172-2732191 None:intergenic 35.0%
AGGAATAAGGATGAGAAAGT+GGG - chr1_3:2732177-2732196 Msa0096980:CDS 35.0%
! ACTGCTGTGTTTTATCTTAG+AGG - chr1_3:2732295-2732314 Msa0096980:CDS 35.0%
GGAAAATTAAGGTTTGCAGA+AGG + chr1_3:2732322-2732341 None:intergenic 35.0%
GAAGAAAATCTACAACAACG+TGG - chr1_3:2732373-2732392 Msa0096980:CDS 35.0%
! ATATGTCGGCTGATTCAATA+AGG - chr1_3:2732398-2732417 Msa0096980:CDS 35.0%
AGGAAAAAAGCTACACAAGT+TGG - chr1_3:2732418-2732437 Msa0096980:CDS 35.0%
TTTGGAAACTCATTCAAGTC+AGG + chr1_3:2732547-2732566 None:intergenic 35.0%
GAGGAATAAGGATGAGAAAG+TGG - chr1_3:2732176-2732195 Msa0096980:CDS 40.0%
GGAATAAGGATGAGAAAGTG+GGG - chr1_3:2732178-2732197 Msa0096980:CDS 40.0%
TGGTCTTTGAACAACAGTTC+TGG + chr1_3:2732343-2732362 None:intergenic 40.0%
ACAACAACGTGGGAATATGT+CGG - chr1_3:2732384-2732403 Msa0096980:CDS 40.0%
GATGAGAAAGTGGGGTAAGT+GGG - chr1_3:2732186-2732205 Msa0096980:CDS 45.0%
GGATGAGAAAGTGGGGTAAG+TGG - chr1_3:2732185-2732204 Msa0096980:CDS 50.0%
TAAGCACGTGCTGCAGCAAT+AGG + chr1_3:2732271-2732290 None:intergenic 50.0%
GAGAAAGTGGGGTAAGTGGG+TGG - chr1_3:2732189-2732208 Msa0096980:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 2732052 2732582 2732052 ID=Msa0096980;Name=Msa0096980
chr1_3 mRNA 2732052 2732582 2732052 ID=Msa0096980-mRNA-1;Parent=Msa0096980;Name=Msa0096980-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|176
chr1_3 exon 2732052 2732582 2732052 ID=Msa0096980-mRNA-1:exon:765;Parent=Msa0096980-mRNA-1
chr1_3 CDS 2732052 2732582 2732052 ID=Msa0096980-mRNA-1:cds;Parent=Msa0096980-mRNA-1
Gene Sequence

>Msa0096980

ATGGAAGAAGAAGATAGGGAATATTGTTGTTCGATGAATTCAAGAACCAATATCCCTGTAGATCACAAAAATAACAATAACAATAAGGGGATGAAAAAAGAGAAAAAAGCTATGAAACCATATAGAGGAATAAGGATGAGAAAGTGGGGTAAGTGGGTGGCAGAGATTAGAGAACCAAACAAGAGATCAAGAATTTGGTTAGGTTCTTACATAACACCTATTGCTGCAGCACGTGCTTATGATACTGCTGTGTTTTATCTTAGAGGTCCTTCTGCAAACCTTAATTTTCCAGAACTGTTGTTCAAAGACCAACAAGAAGATGAAGAAAATCTACAACAACGTGGGAATATGTCGGCTGATTCAATAAGGAAAAAAGCTACACAAGTTGGTGCTAGAGTTGATGCTATTGAAACTAATTCTCTAATTAATCATCATCATCATCATGTTTCATCCAATAATCATGTTCACTCCAATTCTACTTCTTCTCTCAAACCTGACTTGAATGAGTTTCCAAAACCTGAAGATTGTTGA
Protein sequence

>Msa0096980

MEEEDREYCCSMNSRTNIPVDHKNNNNNKGMKKEKKAMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYITPIAAARAYDTAVFYLRGPSANLNFPELLFKDQQEDEENLQQRGNMSADSIRKKATQVGARVDAIETNSLINHHHHHVSSNNHVHSNSTSSLKPDLNEFPKPEDC*