AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0004840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004840 MtrunA17_Chr1g0153151 93.333 180 7 2 1 175 1 180 7.73e-98 280
Msa0004840 MtrunA17_Chr3g0134161 60.345 174 52 5 3 174 13 171 2.77e-64 195
Msa0004840 MtrunA17_Chr5g0401871 51.149 174 56 4 21 173 9 174 1.33e-49 158
Msa0004840 MtrunA17_Chr5g0399441 69.492 59 18 0 41 99 28 86 1.86e-24 94.0
Msa0004840 MtrunA17_Chr4g0055951 67.797 59 19 0 41 99 74 132 3.42e-24 95.1
Msa0004840 MtrunA17_Chr2g0331231 66.102 59 20 0 41 99 41 99 8.48e-24 92.8
Msa0004840 MtrunA17_Chr6g0486701 69.492 59 18 0 41 99 44 102 1.28e-23 92.8
Msa0004840 MtrunA17_Chr3g0140161 66.102 59 20 0 41 99 43 101 1.42e-23 91.7
Msa0004840 MtrunA17_Chr1g0150691 67.797 59 19 0 39 97 20 78 1.97e-23 92.4
Msa0004840 MtrunA17_Chr7g0275841 65.517 58 20 0 41 98 28 85 2.23e-23 90.9
Msa0004840 MtrunA17_Chr1g0150661 53.846 78 36 0 20 97 14 91 2.49e-23 92.0
Msa0004840 MtrunA17_Chr1g0150671 65.079 63 22 0 39 101 44 106 2.93e-23 93.2
Msa0004840 MtrunA17_Chr8g0390091 66.102 59 20 0 41 99 37 95 4.88e-23 91.7
Msa0004840 MtrunA17_Chr5g0396301 48.000 100 43 3 39 135 16 109 5.46e-23 89.7
Msa0004840 MtrunA17_Chr7g0232261 54.545 88 31 2 20 99 33 119 1.53e-22 90.1
Msa0004840 MtrunA17_Chr1g0150631 66.102 59 20 0 39 97 36 94 2.37e-22 89.7
Msa0004840 MtrunA17_Chr2g0301171 64.912 57 20 0 41 97 19 75 1.17e-21 87.0
Msa0004840 MtrunA17_Chr2g0301181 54.930 71 32 0 27 97 5 75 2.88e-21 86.7
Msa0004840 MtrunA17_Chr8g0334801 63.333 60 22 0 41 100 52 111 5.79e-21 85.5
Msa0004840 MtrunA17_Chr5g0425561 46.535 101 43 3 36 136 168 257 8.64e-21 87.8
Msa0004840 MtrunA17_Chr7g0221501 43.956 91 48 1 31 118 41 131 9.92e-21 84.0
Msa0004840 MtrunA17_Chr8g0340311 61.017 59 23 0 41 99 47 105 1.69e-20 84.3
Msa0004840 MtrunA17_Chr5g0437671 62.712 59 22 0 41 99 85 143 1.73e-20 87.0
Msa0004840 MtrunA17_Chr2g0323171 59.322 59 24 0 41 99 65 123 1.86e-20 83.6
Msa0004840 MtrunA17_Chr3g0136551 58.730 63 26 0 34 96 58 120 1.88e-20 85.5
Msa0004840 MtrunA17_Chr3g0099871 42.063 126 63 3 41 166 27 142 2.47e-20 84.3
Msa0004840 MtrunA17_Chr8g0346741 60.345 58 23 0 41 98 39 96 2.61e-20 83.2
Msa0004840 MtrunA17_Chr2g0301191 64.912 57 20 0 41 97 19 75 2.71e-20 84.0
Msa0004840 MtrunA17_Chr7g0257911 62.712 59 22 0 41 99 31 89 3.00e-20 85.1
Msa0004840 MtrunA17_Chr4g0044871 59.649 57 23 0 41 97 96 152 3.29e-20 84.0
Msa0004840 MtrunA17_Chr1g0203861 55.405 74 32 1 30 102 32 105 3.93e-20 83.2
Msa0004840 MtrunA17_Chr1g0196781 59.016 61 25 0 39 99 150 210 3.95e-20 85.1
Msa0004840 MtrunA17_Chr8g0383591 47.674 86 44 1 27 111 131 216 4.45e-20 85.1
Msa0004840 MtrunA17_Chr4g0055781 65.517 58 19 1 41 97 102 159 7.10e-20 83.6
Msa0004840 MtrunA17_Chr4g0044911 59.649 57 23 0 41 97 96 152 8.74e-20 82.8
Msa0004840 MtrunA17_Chr3g0115631 49.438 89 39 1 11 99 126 208 9.31e-20 84.7
Msa0004840 MtrunA17_Chr4g0044881 59.649 57 23 0 41 97 114 170 1.34e-19 82.8
Msa0004840 MtrunA17_Chr7g0221471 51.471 68 33 0 31 98 41 108 1.51e-19 80.9
Msa0004840 MtrunA17_Chr4g0044901 59.649 57 23 0 41 97 96 152 1.64e-19 82.0
Msa0004840 MtrunA17_Chr4g0017851 50.746 67 33 0 32 98 109 175 2.22e-19 83.2
Msa0004840 MtrunA17_Chr4g0055801 63.793 58 20 1 41 97 154 211 2.67e-19 82.8
Msa0004840 MtrunA17_Chr4g0023411 55.932 59 26 0 41 99 65 123 3.74e-19 80.5
Msa0004840 MtrunA17_Chr2g0295421 43.333 90 48 1 9 98 67 153 5.88e-19 81.3
Msa0004840 MtrunA17_Chr1g0170531 55.224 67 29 1 41 106 89 155 6.05e-19 80.9
Msa0004840 MtrunA17_Chr8g0382491 56.061 66 29 0 36 101 108 173 6.52e-19 81.6
Msa0004840 MtrunA17_Chr2g0324131 58.730 63 26 0 39 101 216 278 7.16e-19 82.8
Msa0004840 MtrunA17_Chr7g0250711 48.810 84 39 2 24 103 40 123 7.19e-19 80.1
Msa0004840 MtrunA17_Chr6g0473931 40.367 109 61 2 30 134 21 129 1.44e-18 79.0
Msa0004840 MtrunA17_Chr1g0184081 51.351 74 35 1 25 97 5 78 1.78e-18 77.4
Msa0004840 MtrunA17_Chr1g0186671 52.055 73 34 1 26 97 4 76 1.88e-18 77.0
Msa0004840 MtrunA17_Chr3g0136541 62.963 54 20 0 43 96 42 95 2.02e-18 79.3
Msa0004840 MtrunA17_Chr2g0334031 45.349 86 45 1 13 98 91 174 2.18e-18 80.9
Msa0004840 MtrunA17_Chr2g0283171 44.444 90 45 2 13 97 31 120 3.60e-18 77.0
Msa0004840 MtrunA17_Chr8g0375031 55.172 58 26 0 39 96 123 180 3.71e-18 78.6
Msa0004840 MtrunA17_Chr7g0250731 40.196 102 56 2 12 108 28 129 3.89e-18 78.2
Msa0004840 MtrunA17_Chr5g0396191 49.505 101 42 2 41 141 11 102 5.86e-18 77.0
Msa0004840 MtrunA17_Chr7g0225131 61.017 59 20 1 39 97 27 82 8.98e-18 74.3
Msa0004840 MtrunA17_Chr1g0195151 53.623 69 30 1 29 97 67 133 1.03e-17 78.6
Msa0004840 MtrunA17_Chr7g0265851 61.404 57 22 0 41 97 24 80 1.06e-17 77.0
Msa0004840 MtrunA17_Chr7g0250721 54.545 66 29 1 39 103 59 124 1.30e-17 76.6
Msa0004840 MtrunA17_Chr8g0335311 53.731 67 30 1 41 106 96 162 1.53e-17 76.3
Msa0004840 MtrunA17_Chr8g0344961 52.000 75 35 1 25 98 107 181 1.61e-17 78.6
Msa0004840 MtrunA17_Chr1g0189941 48.718 78 28 1 31 96 2 79 2.18e-17 75.1
Msa0004840 MtrunA17_Chr5g0396181 51.136 88 35 1 41 128 21 100 2.19e-17 75.9
Msa0004840 MtrunA17_Chr6g0474001 39.394 99 57 1 41 136 54 152 2.53e-17 77.0
Msa0004840 MtrunA17_Chr2g0282651 51.429 70 32 1 28 97 59 126 2.74e-17 76.6
Msa0004840 MtrunA17_Chr1g0196871 56.897 58 24 1 41 97 16 73 2.78e-17 73.2
Msa0004840 MtrunA17_Chr6g0486711 44.554 101 45 1 10 99 7 107 3.44e-17 76.3
Msa0004840 MtrunA17_Chr1g0146191 52.439 82 37 1 20 99 24 105 3.48e-17 76.6
Msa0004840 MtrunA17_Chr6g0473941 51.351 74 35 1 30 102 21 94 4.84e-17 75.1
Msa0004840 MtrunA17_Chr1g0186731 48.718 78 37 2 21 97 3 78 5.62e-17 73.6
Msa0004840 MtrunA17_Chr5g0437371 60.714 56 22 0 41 96 66 121 5.67e-17 76.6
Msa0004840 MtrunA17_Chr2g0283181 54.286 70 30 2 30 97 137 206 6.85e-17 76.3
Msa0004840 MtrunA17_Chr4g0002631 56.140 57 25 0 41 97 8 64 7.53e-17 74.3
Msa0004840 MtrunA17_Chr6g0473741 52.857 70 32 1 30 98 54 123 8.35e-17 75.1
Msa0004840 MtrunA17_Chr3g0126321 55.172 58 26 0 39 96 111 168 8.95e-17 76.6
Msa0004840 MtrunA17_Chr8g0335321 55.556 63 27 1 39 100 94 156 1.06e-16 74.3
Msa0004840 MtrunA17_Chr6g0473971 47.500 80 41 1 24 102 36 115 1.22e-16 74.7
Msa0004840 MtrunA17_Chr6g0473781 42.157 102 50 2 30 130 45 138 1.24e-16 74.3
Msa0004840 MtrunA17_Chr8g0335331 54.688 64 28 1 41 103 125 188 1.41e-16 73.9
Msa0004840 MtrunA17_Chr1g0158971 55.357 56 25 0 41 96 115 170 1.44e-16 75.9
Msa0004840 MtrunA17_Chr5g0396911 43.820 89 45 1 13 96 79 167 1.45e-16 75.5
Msa0004840 MtrunA17_Chr6g0473981 36.937 111 66 2 30 136 42 152 2.54e-16 73.9
Msa0004840 MtrunA17_Chr2g0316931 53.333 60 28 0 41 100 31 90 3.03e-16 73.2
Msa0004840 MtrunA17_Chr5g0396171 47.761 67 35 0 43 109 26 92 3.14e-16 70.1
Msa0004840 MtrunA17_Chr6g0473881 52.857 70 32 1 30 98 98 167 4.27e-16 74.3
Msa0004840 MtrunA17_Chr4g0063751 50.847 59 29 0 39 97 5 63 4.31e-16 72.8
Msa0004840 MtrunA17_Chr4g0046161 46.512 86 39 3 14 97 34 114 4.91e-16 70.5
Msa0004840 MtrunA17_Chr7g0261151 54.839 62 27 1 41 101 20 81 5.50e-16 70.9
Msa0004840 MtrunA17_Chr5g0424051 66.667 60 19 1 39 97 94 153 7.74e-16 73.2
Msa0004840 MtrunA17_Chr3g0114761 63.934 61 20 1 39 97 23 83 7.90e-16 72.0
Msa0004840 MtrunA17_Chr6g0473961 33.600 125 79 2 16 136 28 152 8.61e-16 72.0
Msa0004840 MtrunA17_Chr2g0282621 56.140 57 25 0 41 97 15 71 8.72e-16 71.2
Msa0004840 MtrunA17_Chr2g0321071 40.541 111 53 4 41 149 47 146 1.04e-15 72.0
Msa0004840 MtrunA17_Chr6g0473861 53.448 58 27 0 41 98 63 120 1.20e-15 72.8
Msa0004840 MtrunA17_Chr4g0003421 50.847 59 29 0 39 97 38 96 1.24e-15 72.0
Msa0004840 MtrunA17_Chr7g0243431 53.968 63 22 1 41 96 78 140 1.38e-15 73.6
Msa0004840 MtrunA17_Chr7g0261101 56.897 58 24 1 41 97 20 77 1.38e-15 69.7
Msa0004840 MtrunA17_Chr3g0137174 54.386 57 26 0 41 97 8 64 1.67e-15 70.9
Msa0004840 MtrunA17_Chr2g0297331 54.839 62 27 1 41 101 14 75 1.80e-15 69.3
Msa0004840 MtrunA17_Chr4g0057241 61.404 57 21 1 41 97 15 70 2.03e-15 70.1
Msa0004840 MtrunA17_Chr6g0473771 51.471 68 32 1 32 98 33 100 2.91e-15 68.2
Msa0004840 MtrunA17_Chr2g0333011 49.153 59 30 0 39 97 5 63 2.91e-15 69.7
Msa0004840 MtrunA17_Chr4g0026881 50.000 64 31 1 41 103 97 160 3.02e-15 70.9
Msa0004840 MtrunA17_Chr8g0378811 45.000 80 41 1 20 96 31 110 5.59e-15 70.5
Msa0004840 MtrunA17_Chr5g0398091 54.688 64 23 1 41 98 54 117 1.28e-14 68.9
Msa0004840 MtrunA17_Chr5g0398061 54.688 64 23 1 41 98 49 112 2.37e-14 68.2
Msa0004840 MtrunA17_Chr5g0438801 52.632 57 27 0 41 97 51 107 2.40e-14 68.9
Msa0004840 MtrunA17_Chr8g0350701 45.833 72 39 0 32 103 18 89 2.62e-14 69.3
Msa0004840 MtrunA17_Chr5g0432821 39.241 79 48 0 41 119 124 202 3.18e-14 68.6
Msa0004840 MtrunA17_Chr3g0129421 57.576 66 28 0 33 98 162 227 3.36e-14 69.3
Msa0004840 MtrunA17_Chr5g0398081 41.905 105 46 3 41 139 49 144 3.39e-14 67.8
Msa0004840 MtrunA17_Chr2g0286161 31.159 138 89 3 29 164 39 172 3.44e-14 68.9
Msa0004840 MtrunA17_Chr5g0438831 50.877 57 28 0 41 97 46 102 3.77e-14 68.6
Msa0004840 MtrunA17_Chr1g0170471 56.000 50 21 1 49 97 91 140 3.91e-14 66.6
Msa0004840 MtrunA17_Chr4g0055761 50.000 70 34 1 29 97 133 202 4.27e-14 68.2
Msa0004840 MtrunA17_Chr4g0026931 50.794 63 30 1 42 103 132 194 4.84e-14 68.2
Msa0004840 MtrunA17_Chr8g0387801 53.448 58 27 0 39 96 105 162 6.42e-14 68.2
Msa0004840 MtrunA17_Chr3g0142081 47.561 82 43 0 29 110 27 108 7.41e-14 67.0
Msa0004840 MtrunA17_Chr8g0345531 40.260 77 42 1 6 82 85 157 8.00e-14 68.2
Msa0004840 MtrunA17_Chr8g0367911 50.000 56 28 0 41 96 44 99 1.20e-13 67.4
Msa0004840 MtrunA17_Chr3g0131601 58.621 58 24 0 41 98 76 133 1.28e-13 67.0
Msa0004840 MtrunA17_Chr1g0183981 50.847 59 28 1 39 96 73 131 1.47e-13 65.9
Msa0004840 MtrunA17_Chr4g0042761 46.269 67 36 0 30 96 37 103 1.91e-13 67.0
Msa0004840 MtrunA17_Chr1g0186681 50.847 59 27 1 41 97 19 77 2.00e-13 63.9
Msa0004840 MtrunA17_Chr1g0184071 45.333 75 40 1 23 96 51 125 2.82e-13 64.3
Msa0004840 MtrunA17_Chr4g0057231 45.556 90 45 3 13 98 15 104 2.88e-13 63.9
Msa0004840 MtrunA17_Chr7g0217991 46.032 63 34 0 34 96 35 97 4.53e-13 66.2
Msa0004840 MtrunA17_Chr1g0155751 52.113 71 34 0 29 99 27 97 5.92e-13 65.1
Msa0004840 MtrunA17_Chr1g0184061 49.153 59 29 1 39 96 75 133 6.69e-13 64.3
Msa0004840 MtrunA17_Chr8g0345551 41.558 77 42 1 6 82 85 158 8.02e-13 65.5
Msa0004840 MtrunA17_Chr7g0261181 59.375 64 25 1 35 97 7 70 8.45e-13 62.0
Msa0004840 MtrunA17_Chr1g0149331 50.704 71 33 1 41 111 7 75 1.26e-12 63.2
Msa0004840 MtrunA17_Chr7g0253424 38.095 84 51 1 13 96 12 94 1.49e-12 63.9
Msa0004840 MtrunA17_Chr6g0473791 41.667 84 43 2 30 112 45 123 1.62e-12 62.0
Msa0004840 MtrunA17_Chr6g0453661 43.548 62 35 0 35 96 32 93 1.88e-12 64.3
Msa0004840 MtrunA17_Chr4g0062551 44.068 59 33 0 39 97 51 109 2.48e-12 61.2
Msa0004840 MtrunA17_Chr5g0412641 50.000 56 28 0 41 96 46 101 3.04e-12 63.5
Msa0004840 MtrunA17_Chr5g0396741 48.421 95 47 1 39 133 115 207 3.58e-12 63.2
Msa0004840 MtrunA17_Chr6g0461941 52.055 73 31 1 28 100 11 79 3.64e-12 62.0
Msa0004840 MtrunA17_Chr1g0184031 49.123 57 28 1 41 96 84 140 4.55e-12 62.0
Msa0004840 MtrunA17_Chr4g0062161 44.068 59 33 0 39 97 51 109 9.68e-12 60.8
Msa0004840 MtrunA17_Chr1g0183961 60.345 58 22 1 41 97 27 84 1.22e-11 59.7
Msa0004840 MtrunA17_Chr1g0184011 49.091 55 27 1 43 96 86 140 1.90e-11 60.5
Msa0004840 MtrunA17_Chr4g0066931 39.706 68 40 1 29 96 42 108 2.08e-11 61.2
Msa0004840 MtrunA17_Chr1g0183931 47.945 73 37 1 39 110 99 171 2.35e-11 60.5
Msa0004840 MtrunA17_Chr6g0461271 41.176 68 40 0 29 96 21 88 3.79e-11 60.5
Msa0004840 MtrunA17_Chr1g0203831 61.404 57 21 1 41 97 57 112 3.94e-11 59.3
Msa0004840 MtrunA17_Chr5g0423811 44.776 67 34 1 19 82 63 129 4.55e-11 60.1
Msa0004840 MtrunA17_Chr3g0137831 50.725 69 32 1 39 107 6 72 4.59e-11 59.3
Msa0004840 MtrunA17_Chr1g0205961 47.059 51 27 0 32 82 106 156 9.24e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0004840 AT2G23340.1 55.333 150 60 2 30 174 17 164 1.43e-50 160
Msa0004840 AT1G46768.1 50.286 175 65 4 1 175 1 153 6.73e-50 158
Msa0004840 AT1G46768.2 50.286 175 65 4 1 175 1 153 6.73e-50 158
Msa0004840 AT3G50260.1 58.219 146 46 4 31 175 15 146 3.77e-49 156
Msa0004840 AT5G67190.1 66.102 118 32 2 35 152 15 124 2.30e-48 155
Msa0004840 AT1G46768.3 53.947 152 58 3 1 152 1 140 1.13e-47 152
Msa0004840 AT4G36900.1 50.000 168 55 3 35 173 24 191 5.14e-45 147
Msa0004840 AT4G06746.1 74.227 97 22 1 39 135 34 127 2.65e-44 144
Msa0004840 AT1G71450.1 39.161 143 69 2 24 166 7 131 2.14e-26 99.4
Msa0004840 AT4G16750.1 49.485 97 45 2 9 101 4 100 1.57e-25 97.1
Msa0004840 AT1G21910.1 52.083 96 33 3 41 130 50 138 5.65e-25 97.1
Msa0004840 AT2G35700.1 62.295 61 23 0 41 101 45 105 3.89e-23 91.3
Msa0004840 AT5G11590.1 66.102 59 20 0 41 99 51 109 5.17e-23 92.0
Msa0004840 AT4G32800.1 60.294 68 27 0 32 99 10 77 5.90e-23 91.3
Msa0004840 AT1G74930.1 60.811 74 24 2 29 97 4 77 6.56e-23 90.5
Msa0004840 AT3G16280.2 62.712 59 22 0 41 99 79 137 7.42e-23 92.0
Msa0004840 AT3G16280.1 62.712 59 22 0 41 99 61 119 7.72e-23 91.3
Msa0004840 AT1G19210.1 57.971 69 28 1 31 98 1 69 2.45e-22 89.0
Msa0004840 AT2G20880.1 51.111 90 42 1 37 124 183 272 3.60e-22 91.3
Msa0004840 AT3G60490.1 66.102 59 20 0 41 99 71 129 4.82e-22 89.7
Msa0004840 AT2G44940.1 64.407 59 21 0 41 99 100 158 6.11e-22 90.1
Msa0004840 AT1G01250.1 65.517 58 20 0 41 98 45 102 7.41e-22 87.8
Msa0004840 AT2G33710.2 40.000 110 52 2 3 98 18 127 1.13e-21 88.2
Msa0004840 AT2G25820.1 66.102 59 20 0 41 99 26 84 1.15e-21 88.2
Msa0004840 AT2G33710.1 40.000 110 52 2 3 98 18 127 1.28e-21 87.8
Msa0004840 AT5G25810.1 51.250 80 39 0 20 99 15 94 2.18e-21 87.4
Msa0004840 AT2G22200.1 48.810 84 43 0 41 124 71 154 3.38e-21 87.8
Msa0004840 AT5G21960.1 63.793 58 21 0 41 98 7 64 5.83e-21 85.9
Msa0004840 AT4G28140.1 62.903 62 23 0 37 98 139 200 1.06e-20 87.0
Msa0004840 AT1G71520.1 45.455 99 41 2 41 135 14 103 1.36e-20 83.2
Msa0004840 AT1G36060.1 46.602 103 42 2 36 136 138 229 1.44e-20 86.7
Msa0004840 AT2G47520.1 50.588 85 36 2 32 116 43 121 1.45e-20 84.0
Msa0004840 AT4G13620.1 62.295 61 23 0 39 99 230 290 2.87e-20 86.7
Msa0004840 AT4G27950.1 37.857 140 67 3 39 173 116 240 2.93e-20 86.3
Msa0004840 AT4G39780.1 54.930 71 32 0 33 103 85 155 3.03e-20 85.1
Msa0004840 AT1G77640.1 50.000 96 46 1 35 130 37 130 5.25e-20 84.0
Msa0004840 AT5G65130.1 54.795 73 30 1 31 100 98 170 7.08e-20 84.3
Msa0004840 AT5G65130.2 54.795 73 30 1 31 100 100 172 8.07e-20 84.3
Msa0004840 AT1G22190.1 54.930 71 32 0 36 106 78 148 8.36e-20 84.0
Msa0004840 AT5G47230.1 67.241 58 18 1 41 97 156 213 9.81e-20 84.3
Msa0004840 AT1G75490.1 60.000 60 24 0 41 100 42 101 1.60e-19 82.0
Msa0004840 AT3G57600.1 54.930 71 32 0 29 99 16 86 1.83e-19 83.2
Msa0004840 AT4G31060.1 56.522 69 29 1 29 97 16 83 1.98e-19 81.3
Msa0004840 AT1G22810.1 45.361 97 42 2 41 135 14 101 2.12e-19 80.1
Msa0004840 AT1G33760.1 70.000 60 18 0 41 100 20 79 5.03e-19 80.1
Msa0004840 AT1G78080.1 55.714 70 31 0 30 99 141 210 7.21e-19 82.4
Msa0004840 AT2G40340.2 49.296 71 36 0 29 99 2 72 8.75e-19 81.6
Msa0004840 AT2G40340.5 49.296 71 36 0 29 99 2 72 8.75e-19 81.6
Msa0004840 AT2G40340.4 49.296 71 36 0 29 99 2 72 8.75e-19 81.6
Msa0004840 AT4G11140.1 57.895 57 24 0 41 97 87 143 9.12e-19 81.6
Msa0004840 AT5G05410.2 61.404 57 22 0 41 97 79 135 9.56e-19 81.6
Msa0004840 AT2G44840.1 58.209 67 26 2 35 100 87 152 9.83e-19 80.5
Msa0004840 AT5G05410.1 61.404 57 22 0 41 97 79 135 1.16e-18 82.0
Msa0004840 AT4G25480.1 55.714 70 30 1 30 98 39 108 1.46e-18 79.7
Msa0004840 AT5G61600.1 63.793 58 20 1 41 97 88 145 1.50e-18 80.1
Msa0004840 AT4G25490.1 57.353 68 28 1 30 96 36 103 1.57e-18 79.7
Msa0004840 AT1G77200.1 61.765 68 26 0 32 99 34 101 1.57e-18 80.1
Msa0004840 AT5G53290.1 44.086 93 50 1 4 96 90 180 1.64e-18 81.6
Msa0004840 AT5G51990.1 58.824 68 27 1 30 96 42 109 1.78e-18 79.7
Msa0004840 AT5G51190.1 60.345 58 22 1 41 97 72 129 2.19e-18 79.3
Msa0004840 AT4G25470.1 55.714 70 30 1 30 98 39 108 2.25e-18 79.3
Msa0004840 AT2G40340.6 34.058 138 87 2 29 166 67 200 2.88e-18 80.9
Msa0004840 AT3G15210.1 46.591 88 39 3 19 105 10 90 2.93e-18 79.0
Msa0004840 AT2G40340.1 49.296 71 36 0 29 99 60 130 3.05e-18 80.9
Msa0004840 AT3G20310.1 59.649 57 23 0 41 97 27 83 3.09e-18 79.3
Msa0004840 AT5G07580.1 62.069 58 21 1 41 97 110 167 3.15e-18 78.6
Msa0004840 AT2G40340.3 49.296 71 36 0 29 99 60 130 3.24e-18 80.1
Msa0004840 AT5G61890.1 56.897 58 25 0 41 98 90 147 3.25e-18 79.3
Msa0004840 AT4G17490.1 62.069 58 21 1 41 97 137 194 3.68e-18 79.7
Msa0004840 AT5G13330.1 56.897 58 25 0 41 98 39 96 3.75e-18 78.6
Msa0004840 AT3G16770.1 55.224 67 30 0 33 99 71 137 4.09e-18 79.3
Msa0004840 AT1G44830.1 66.667 63 20 1 38 99 32 94 1.03e-17 77.4
Msa0004840 AT3G61630.1 56.897 58 25 0 39 96 103 160 1.29e-17 79.0
Msa0004840 AT1G72360.2 47.368 76 40 0 22 97 57 132 1.95e-17 77.4
Msa0004840 AT1G03800.1 48.649 74 36 1 28 101 42 113 2.44e-17 77.0
Msa0004840 AT1G28360.1 53.968 63 29 0 41 103 12 74 3.45e-17 75.5
Msa0004840 AT5G18450.1 51.471 68 33 0 29 96 22 89 4.03e-17 77.4
Msa0004840 AT4G23750.2 58.621 58 24 0 39 96 120 177 4.10e-17 77.8
Msa0004840 AT4G23750.1 58.621 58 24 0 39 96 120 177 4.10e-17 77.8
Msa0004840 AT5G25390.2 50.820 61 30 0 39 99 5 65 5.09e-17 75.1
Msa0004840 AT1G28370.1 56.140 57 25 0 41 97 20 76 8.75e-17 73.9
Msa0004840 AT1G72360.3 48.611 72 37 0 26 97 59 130 8.81e-17 75.9
Msa0004840 AT1G72360.1 53.968 63 29 0 35 97 19 81 1.04e-16 74.7
Msa0004840 AT1G28370.2 56.140 57 25 0 41 97 58 114 1.32e-16 74.3
Msa0004840 AT5G44210.1 54.386 57 26 0 41 97 33 89 1.42e-16 74.3
Msa0004840 AT1G15360.1 54.237 59 27 0 39 97 5 63 1.70e-16 73.9
Msa0004840 AT1G15360.2 54.237 59 27 0 39 97 5 63 1.70e-16 73.9
Msa0004840 AT2G36450.1 53.521 71 31 2 29 97 2 72 2.33e-16 73.2
Msa0004840 AT5G25190.1 54.386 57 26 0 41 97 8 64 3.56e-16 72.8
Msa0004840 AT3G11020.1 55.172 58 26 0 41 98 78 135 5.82e-16 74.3
Msa0004840 AT1G50640.1 54.386 57 26 0 41 97 28 84 1.06e-15 72.4
Msa0004840 AT1G63030.2 37.391 115 63 2 17 130 5 111 1.14e-15 71.2
Msa0004840 AT1G63030.1 37.391 115 63 2 17 130 5 111 1.14e-15 71.2
Msa0004840 AT1G12610.1 62.500 56 21 0 41 96 30 85 1.29e-15 71.6
Msa0004840 AT5G47220.1 56.667 60 25 1 39 97 115 174 1.53e-15 72.0
Msa0004840 AT3G23230.1 56.897 58 24 1 41 97 20 77 1.68e-15 69.7
Msa0004840 AT5G43410.1 55.172 58 25 1 41 97 15 72 1.86e-15 69.7
Msa0004840 AT2G40350.2 46.479 71 38 0 29 99 62 132 2.16e-15 70.1
Msa0004840 AT2G40350.1 52.542 59 28 0 41 99 67 125 2.75e-15 69.7
Msa0004840 AT2G38340.1 49.351 77 31 1 41 109 70 146 5.41e-15 70.9
Msa0004840 AT4G17500.1 56.897 58 24 1 41 97 148 205 1.49e-14 69.7
Msa0004840 AT3G23240.1 50.794 63 30 1 35 96 76 138 1.81e-14 68.9
Msa0004840 AT5G25390.1 49.180 61 28 1 39 99 5 62 1.94e-14 68.2
Msa0004840 AT1G43160.1 61.667 60 23 0 39 98 59 118 2.32e-14 68.2
Msa0004840 AT2G46310.1 47.541 61 32 0 36 96 94 154 2.72e-14 69.3
Msa0004840 AT1G71130.1 39.450 109 50 3 5 108 52 149 5.91e-14 66.2
Msa0004840 AT5G52020.1 60.656 61 23 1 41 101 65 124 9.47e-14 67.0
Msa0004840 AT5G64750.1 58.000 50 21 0 49 98 193 242 1.17e-13 68.2
Msa0004840 AT5G50080.2 50.000 86 34 2 20 98 60 143 2.45e-13 65.9
Msa0004840 AT5G07310.1 58.621 58 24 0 41 98 92 149 3.11e-13 66.2
Msa0004840 AT5G50080.1 50.000 86 34 2 20 98 51 134 3.12e-13 65.5
Msa0004840 AT2G31230.1 41.892 74 42 1 39 111 84 157 5.79e-13 65.1
Msa0004840 AT5G19790.1 40.260 77 46 0 20 96 1 77 1.45e-12 64.3
Msa0004840 AT2G40220.1 64.286 56 20 0 41 96 55 110 1.51e-12 64.7
Msa0004840 AT1G53910.3 35.338 133 79 2 41 169 123 252 2.20e-12 64.3
Msa0004840 AT1G53910.1 35.338 133 79 2 41 169 125 254 2.26e-12 64.3
Msa0004840 AT1G53910.2 35.338 133 79 2 41 169 125 254 2.26e-12 64.3
Msa0004840 AT1G64380.1 60.563 71 26 1 36 106 131 199 2.45e-12 64.3
Msa0004840 AT4G34410.1 57.895 57 24 0 41 97 136 192 2.59e-12 63.5
Msa0004840 AT5G61590.1 63.793 58 20 1 41 97 107 164 4.61e-12 62.0
Msa0004840 AT1G12980.1 50.000 56 28 0 41 96 57 112 5.15e-12 63.2
Msa0004840 AT1G22985.1 50.820 61 27 1 39 96 73 133 5.74e-12 61.2
Msa0004840 AT5G18560.1 39.706 68 41 0 29 96 43 110 1.09e-11 62.4
Msa0004840 AT3G14230.3 62.069 58 22 0 41 98 123 180 1.58e-11 62.0
Msa0004840 AT1G12890.1 43.056 72 39 1 27 96 5 76 1.65e-11 60.8
Msa0004840 AT3G14230.2 62.069 58 22 0 41 98 124 181 1.68e-11 62.0
Msa0004840 AT1G68550.1 61.538 39 15 0 43 81 115 153 2.00e-11 61.6
Msa0004840 AT1G68550.2 61.538 39 15 0 43 81 115 153 2.00e-11 61.6
Msa0004840 AT3G14230.1 62.069 58 22 0 41 98 128 185 2.01e-11 61.6
Msa0004840 AT1G24590.1 50.000 56 28 0 41 96 58 113 2.11e-11 61.2
Msa0004840 AT1G28160.1 48.214 56 29 0 41 96 39 94 4.64e-11 60.1
Msa0004840 AT5G13910.1 40.541 74 43 1 24 96 2 75 7.35e-11 58.9

Find 29 sgRNAs with CRISPR-Local

Find 33 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCAACAATCTTCAGGTTT+TGG 0.213321 1_1:+7315028 None:intergenic
CAAACAAGAGATCAAGAATT+TGG 0.229206 1_1:-7315360 Msa0004840:CDS
CTCATCCTTATTCCTCTATA+TGG 0.230567 1_1:+7315418 None:intergenic
ACAACAGTTCTGGAAAATTA+AGG 0.258743 1_1:+7315257 None:intergenic
ATTGGAGTGAACATGATTAT+TGG 0.266059 1_1:+7315087 None:intergenic
TTTGAGAGAAGAAGTAGAAT+TGG 0.281114 1_1:+7315069 None:intergenic
CAAATTCTTGATCTCTTGTT+TGG 0.310510 1_1:+7315361 None:intergenic
TTGCATGATCAACAATCTTC+AGG 0.324330 1_1:+7315022 None:intergenic
TGGTCTTTGAACAACAGTTC+TGG 0.346041 1_1:+7315247 None:intergenic
TGAAACCATATAGAGGAATA+AGG 0.368718 1_1:-7315423 Msa0004840:CDS
TTTGTGATCTACAGGGATAT+TGG 0.377358 1_1:+7315489 None:intergenic
AGGGTATGGAAGAAGAAGAT+AGG 0.393416 1_1:-7315540 None:intergenic
ATATGTCGGCTGATTCAATA+AGG 0.409220 1_1:-7315189 Msa0004840:CDS
TAAGCACGTGCTGCAGCAAT+AGG 0.431148 1_1:+7315319 None:intergenic
AAGAGATCAAGAATTTGGTT+AGG 0.437115 1_1:-7315355 Msa0004840:CDS
GAGGAATAAGGATGAGAAAG+TGG 0.441232 1_1:-7315411 Msa0004840:CDS
TTTGGAAACTCATTCAAGTC+AGG 0.457299 1_1:+7315046 None:intergenic
GATGAGAAAGTGGGGTAAGT+GGG 0.457552 1_1:-7315401 Msa0004840:CDS
AGGAATAAGGATGAGAAAGT+GGG 0.476638 1_1:-7315410 Msa0004840:CDS
GGATGAGAAAGTGGGGTAAG+TGG 0.483953 1_1:-7315402 Msa0004840:CDS
GGGTATGGAAGAAGAAGATA+GGG 0.511618 1_1:-7315539 None:intergenic
AAAGCTATGAAACCATATAG+AGG 0.522157 1_1:-7315430 Msa0004840:CDS
GAGAAAGTGGGGTAAGTGGG+TGG 0.554706 1_1:-7315398 Msa0004840:CDS
GGAAAATTAAGGTTTGCAGA+AGG 0.561895 1_1:+7315268 None:intergenic
AAAATAACCATAACAATAAG+GGG 0.573694 1_1:-7315468 Msa0004840:CDS
GGAATAAGGATGAGAAAGTG+GGG 0.610907 1_1:-7315409 Msa0004840:CDS
ACAACAACGTGGGAATATGT+CGG 0.633780 1_1:-7315203 Msa0004840:CDS
AAGAAAATCTACAACAACGT+GGG 0.641819 1_1:-7315213 Msa0004840:CDS
GAAGAAAATCTACAACAACG+TGG 0.766530 1_1:-7315214 Msa0004840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAACCATAACAATAA+GGG - chr1_1:7315096-7315115 Msa0004840:CDS 15.0%
!! CAAAAATAACCATAACAATA+AGG - chr1_1:7315095-7315114 Msa0004840:CDS 20.0%
!! AAAATAACCATAACAATAAG+GGG - chr1_1:7315097-7315116 Msa0004840:CDS 20.0%
!!! GGTTATTTTTGTGATCTACA+GGG + chr1_1:7315086-7315105 None:intergenic 30.0%
!!! TGGTTATTTTTGTGATCTAC+AGG + chr1_1:7315087-7315106 None:intergenic 30.0%
! TTTTCATCCCCTTATTGTTA+TGG + chr1_1:7315107-7315126 None:intergenic 30.0%
AAAGCTATGAAACCATATAG+AGG - chr1_1:7315135-7315154 Msa0004840:CDS 30.0%
TGAAACCATATAGAGGAATA+AGG - chr1_1:7315142-7315161 Msa0004840:CDS 30.0%
CAAATTCTTGATCTCTTGTT+TGG + chr1_1:7315207-7315226 None:intergenic 30.0%
CAAACAAGAGATCAAGAATT+TGG - chr1_1:7315205-7315224 Msa0004840:CDS 30.0%
AAGAGATCAAGAATTTGGTT+AGG - chr1_1:7315210-7315229 Msa0004840:CDS 30.0%
!! ACAACAGTTCTGGAAAATTA+AGG + chr1_1:7315311-7315330 None:intergenic 30.0%
! GATTTTCTTCATCTTCTTGT+TGG + chr1_1:7315341-7315360 None:intergenic 30.0%
AAGAAAATCTACAACAACGT+GGG - chr1_1:7315352-7315371 Msa0004840:CDS 30.0%
ATTGGAGTGAACATGATTAT+TGG + chr1_1:7315481-7315500 None:intergenic 30.0%
TTTGAGAGAAGAAGTAGAAT+TGG + chr1_1:7315499-7315518 None:intergenic 30.0%
TTTGTGATCTACAGGGATAT+TGG + chr1_1:7315079-7315098 None:intergenic 35.0%
CTCATCCTTATTCCTCTATA+TGG + chr1_1:7315150-7315169 None:intergenic 35.0%
AGGAATAAGGATGAGAAAGT+GGG - chr1_1:7315155-7315174 Msa0004840:CDS 35.0%
! ACTGCTGTGTTTTATCTTAG+AGG - chr1_1:7315273-7315292 Msa0004840:CDS 35.0%
GGAAAATTAAGGTTTGCAGA+AGG + chr1_1:7315300-7315319 None:intergenic 35.0%
GAAGAAAATCTACAACAACG+TGG - chr1_1:7315351-7315370 Msa0004840:CDS 35.0%
! ATATGTCGGCTGATTCAATA+AGG - chr1_1:7315376-7315395 Msa0004840:CDS 35.0%
AGGAAAAAAGCTACACAAGT+TGG - chr1_1:7315396-7315415 Msa0004840:CDS 35.0%
TTTGGAAACTCATTCAAGTC+AGG + chr1_1:7315522-7315541 None:intergenic 35.0%
GAGGAATAAGGATGAGAAAG+TGG - chr1_1:7315154-7315173 Msa0004840:CDS 40.0%
GGAATAAGGATGAGAAAGTG+GGG - chr1_1:7315156-7315175 Msa0004840:CDS 40.0%
TGGTCTTTGAACAACAGTTC+TGG + chr1_1:7315321-7315340 None:intergenic 40.0%
ACAACAACGTGGGAATATGT+CGG - chr1_1:7315362-7315381 Msa0004840:CDS 40.0%
GATGAGAAAGTGGGGTAAGT+GGG - chr1_1:7315164-7315183 Msa0004840:CDS 45.0%
GGATGAGAAAGTGGGGTAAG+TGG - chr1_1:7315163-7315182 Msa0004840:CDS 50.0%
TAAGCACGTGCTGCAGCAAT+AGG + chr1_1:7315249-7315268 None:intergenic 50.0%
GAGAAAGTGGGGTAAGTGGG+TGG - chr1_1:7315167-7315186 Msa0004840:CDS 55.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 7315030 7315557 7315030 ID=Msa0004840;Name=Msa0004840
chr1_1 mRNA 7315030 7315557 7315030 ID=Msa0004840-mRNA-1;Parent=Msa0004840;Name=Msa0004840-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|175
chr1_1 exon 7315030 7315557 7315030 ID=Msa0004840-mRNA-1:exon:2566;Parent=Msa0004840-mRNA-1
chr1_1 CDS 7315030 7315557 7315030 ID=Msa0004840-mRNA-1:cds;Parent=Msa0004840-mRNA-1
Gene Sequence

>Msa0004840

ATGGAAGAAGAAGATAGGGAATATTGTTGTTCGATGAATTCAAGAACCAATATCCCTGTAGATCACAAAAATAACCATAACAATAAGGGGATGAAAAAAGAGAAAAAAGCTATGAAACCATATAGAGGAATAAGGATGAGAAAGTGGGGTAAGTGGGTGGCAGAGATTAGAGAACCAAACAAGAGATCAAGAATTTGGTTAGGTTCTTACATAACACCTATTGCTGCAGCACGTGCTTATGATACTGCTGTGTTTTATCTTAGAGGTCCTTCTGCAAACCTTAATTTTCCAGAACTGTTGTTCAAAGACCAACAAGAAGATGAAGAAAATCTACAACAACGTGGGAATATGTCGGCTGATTCAATAAGGAAAAAAGCTACACAAGTTGGTGCTAGAGTTGATGCTATTGAAACTAATTCTCTAATTAATCATCATCATCATGTTTCTTCCAATAATCATGTTCACTCCAATTCTACTTCTTCTCTCAAACCTGACTTGAATGAGTTTCCAAAACCTGAAGATTGTTGA
Protein sequence

>Msa0004840

MEEEDREYCCSMNSRTNIPVDHKNNHNNKGMKKEKKAMKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYITPIAAARAYDTAVFYLRGPSANLNFPELLFKDQQEDEENLQQRGNMSADSIRKKATQVGARVDAIETNSLINHHHHVSSNNHVHSNSTSSLKPDLNEFPKPEDC*