AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0642820

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0642820 MtrunA17_Chr4g0028701 90.304 691 34 9 1 683 1 666 0.0 1145
Msa0642820 MtrunA17_Chr2g0327021 40.030 677 264 28 48 649 3 612 6.74e-120 371
Msa0642820 MtrunA17_Chr7g0240371 40.411 438 183 11 238 672 123 485 8.43e-86 279
Msa0642820 MtrunA17_Chr4g0008591 45.906 342 105 9 245 583 189 453 9.63e-80 265
Msa0642820 MtrunA17_Chr5g0403251 41.515 330 129 7 252 574 338 610 4.96e-67 234
Msa0642820 MtrunA17_Chr7g0267481 37.965 403 179 10 157 559 99 430 7.18e-67 232
Msa0642820 MtrunA17_Chr1g0155681 35.663 415 189 9 255 645 173 533 3.94e-66 229
Msa0642820 MtrunA17_Chr4g0025521 40.120 334 138 6 252 579 217 494 7.76e-66 230
Msa0642820 MtrunA17_Chr8g0387321 42.633 319 127 6 232 550 170 432 5.15e-65 226
Msa0642820 MtrunA17_Chr1g0177751 43.624 298 118 5 251 548 160 407 3.82e-64 224
Msa0642820 MtrunA17_Chr3g0141941 40.764 314 134 5 248 561 158 419 7.21e-61 212
Msa0642820 MtrunA17_Chr3g0141931 38.050 318 145 7 249 566 162 427 2.69e-57 201
Msa0642820 MtrunA17_Chr1g0151681 27.623 467 248 16 148 584 115 521 7.75e-38 148
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0642820 AT2G27990.1 33.797 719 302 26 1 683 4 584 4.51e-90 292
Msa0642820 AT4G34610.2 42.532 308 110 6 253 557 141 384 5.37e-67 229
Msa0642820 AT4G34610.4 42.532 308 110 6 253 557 141 384 5.37e-67 229
Msa0642820 AT4G34610.3 42.532 308 110 6 253 557 141 384 5.37e-67 229
Msa0642820 AT4G34610.1 42.532 308 110 6 253 557 141 384 5.37e-67 229
Msa0642820 AT1G19700.1 35.214 443 195 13 147 557 39 421 9.39e-67 229
Msa0642820 AT1G19700.3 35.214 443 195 13 147 557 39 421 9.39e-67 229
Msa0642820 AT1G19700.5 35.214 443 195 13 147 557 39 421 9.39e-67 229
Msa0642820 AT1G19700.4 35.214 443 195 13 147 557 39 421 9.39e-67 229
Msa0642820 AT1G19700.2 35.214 443 195 13 147 557 39 421 9.39e-67 229
Msa0642820 AT1G75410.1 33.703 451 211 8 160 583 53 442 3.96e-66 227
Msa0642820 AT1G75410.2 33.703 451 211 8 160 583 53 442 3.96e-66 227
Msa0642820 AT5G02030.1 54.545 209 61 3 361 558 234 419 7.65e-65 225
Msa0642820 AT2G35940.3 53.731 201 77 3 348 548 262 446 1.44e-63 224
Msa0642820 AT2G35940.1 53.731 201 77 3 348 548 262 446 1.44e-63 224
Msa0642820 AT2G35940.2 53.731 201 77 3 348 548 262 446 1.44e-63 224
Msa0642820 AT2G16400.1 38.177 351 167 8 349 683 166 482 7.99e-63 217
Msa0642820 AT2G27220.1 38.585 311 103 8 244 554 73 295 1.21e-56 199
Msa0642820 AT2G27220.3 38.585 311 103 8 244 554 73 295 1.21e-56 199
Msa0642820 AT5G41410.1 50.000 208 87 4 353 559 272 463 2.18e-56 202
Msa0642820 AT2G27220.2 37.342 316 118 8 244 554 73 313 9.43e-54 191
Msa0642820 AT4G36870.4 41.549 284 117 6 252 535 312 546 6.52e-52 189
Msa0642820 AT1G75410.3 32.587 402 183 8 160 534 53 393 6.65e-51 182
Msa0642820 AT4G36870.3 41.135 282 117 6 252 533 312 544 1.79e-50 185
Msa0642820 AT1G75430.1 39.231 260 127 6 323 572 52 290 6.30e-49 173
Msa0642820 AT2G27990.2 30.203 543 253 20 1 513 4 450 1.35e-47 174
Msa0642820 AT4G32980.1 27.624 362 186 8 193 554 154 439 3.24e-35 139
Msa0642820 AT4G32980.2 27.624 362 186 8 193 554 154 439 3.24e-35 139
Msa0642820 AT1G75430.2 34.343 198 102 6 323 513 52 228 4.11e-24 103

Find 185 sgRNAs with CRISPR-Local

Find 479 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTCGAGCGTTAAGAATT+TGG 0.167949 4_3:+45010270 None:intergenic
ATTTAAATTTAATGTGATAT+TGG 0.186069 4_3:-45002244 Msa0642820:three_prime_UTR
ATCTTTCAGGTAACCCTCTC+TGG 0.199963 4_3:+45004754 None:intergenic
TATATATAACACAGGTTAAT+TGG 0.214505 4_3:-45010350 Msa0642820:five_prime_UTR
ATCACTGTTGAATCCATATT+TGG 0.216643 4_3:+45002928 None:intergenic
AAGTATAGTAGTTGGAAATT+TGG 0.228982 4_3:-45010021 Msa0642820:five_prime_UTR
ATCCCCTACGACCGGCTTTA+TGG 0.231926 4_3:+45010293 None:intergenic
AGAATTGCCACTGATCTTTC+AGG 0.234528 4_3:+45004741 None:intergenic
GGTCCACTTGGACCATTTAC+TGG 0.239951 4_3:-45009277 Msa0642820:CDS
TGTTAGGAAACTCTTGATTC+TGG 0.254536 4_3:+45009941 None:intergenic
CTACTAGTAGTAGTGGTTTA+AGG 0.267636 4_3:-45009306 Msa0642820:CDS
TTTAAATTTAATGTGATATT+GGG 0.269604 4_3:-45002243 Msa0642820:three_prime_UTR
TCATGAAATACAGGTATAAT+AGG 0.277260 4_3:+45009532 None:intergenic
AATTGTTCAATGTTGTTGTT+AGG 0.282548 4_3:+45009925 None:intergenic
GTAATTGAGCCTTATTCTTT+TGG 0.283413 4_3:+45008936 None:intergenic
TAATGAATCATCATGGCATT+TGG 0.286737 4_3:-45009576 Msa0642820:CDS
AACCAACAACACTAATTTCT+AGG 0.290192 4_3:-45009336 Msa0642820:CDS
CCACCATTTGCATTTGTTGA+TGG 0.290812 4_3:+45005099 None:intergenic
TGCATGTTGCACAACAAATT+AGG 0.293946 4_3:-45009981 Msa0642820:CDS
TGAAAAGCACTTTCAGTGTT+TGG 0.299425 4_3:-45003064 Msa0642820:CDS
TGATCAGATTACACCAAATA+TGG 0.305163 4_3:-45002941 Msa0642820:CDS
CACTTTCAGTGTTTGGAAAT+GGG 0.305923 4_3:-45003057 Msa0642820:CDS
TCCCTAGAAATTAGTGTTGT+TGG 0.305981 4_3:+45009334 None:intergenic
GTTGTTGGTTGTTCTAGTTC+TGG 0.313916 4_3:-45009118 Msa0642820:CDS
AGTGGTGGTGATGGAGGAAT+TGG 0.314187 4_3:-45009004 Msa0642820:CDS
AAACTTACATGTCAAGTATT+AGG 0.326456 4_3:-45004960 Msa0642820:CDS
AACCTCAACAACAGCATGTT+TGG 0.326715 4_3:-45004782 Msa0642820:CDS
AATGAATCATCATGGCATTT+GGG 0.328650 4_3:-45009575 Msa0642820:CDS
ACCAGAGTGCCAAAAGAATA+AGG 0.328721 4_3:-45008945 Msa0642820:CDS
GCACTTTCAGTGTTTGGAAA+TGG 0.338021 4_3:-45003058 Msa0642820:CDS
TTGGAAATGGGGTCATCTTC+AGG 0.341648 4_3:-45003045 Msa0642820:CDS
ATGAAAATCAAGCAAATTTG+TGG 0.348791 4_3:-45009513 Msa0642820:CDS
GCAAAAGGTAGTAGTAATTC+AGG 0.350990 4_3:-45009070 Msa0642820:CDS
GTAGACCTTAGACATCAATT+TGG 0.356780 4_3:-45002805 Msa0642820:CDS
AGCCTGCAGGTTGTGGTGTT+TGG 0.357501 4_3:+45009890 None:intergenic
TGAAGATGAAGTTGAGGGTT+TGG 0.362405 4_3:+45009390 None:intergenic
ATAAATAATAGGTATCAAAT+TGG 0.363771 4_3:-45003215 Msa0642820:intron
TGTTTGTGTGGAGGATAGAT+AGG 0.365834 4_3:+45010690 None:intergenic
CAATGTTTCATTGTCGCGTT+CGG 0.370295 4_3:-45002390 Msa0642820:three_prime_UTR
AACTTCTACCTTTGATTCTC+CGG 0.385907 4_3:+45010231 None:intergenic
TTCACATAGTACTTCAGAAA+TGG 0.389982 4_3:-45009605 Msa0642820:CDS
AGCTACACCATACATTTCAT+TGG 0.390026 4_3:-45005042 Msa0642820:CDS
TCCTTTACACAGAAACCCTT+TGG 0.393027 4_3:-45009749 Msa0642820:CDS
GGTTCATCTTCAATGTTGTA+TGG 0.394873 4_3:-45009046 Msa0642820:CDS
TGAAGTACTATGTGAACTAA+TGG 0.397402 4_3:+45009612 None:intergenic
AGCTTACAAAAGAACAAATC+TGG 0.398649 4_3:-45004834 Msa0642820:CDS
TGTGGAGGATAGATAGGAAA+TGG 0.402084 4_3:+45010696 None:intergenic
TTGTTTCTCCAGCAAATTGT+TGG 0.404979 4_3:+45002610 None:intergenic
TATGCTGGCCAACAATTTGC+TGG 0.405505 4_3:-45002618 Msa0642820:three_prime_UTR
TAAACGCTCGAGTCCGTGTA+TGG 0.405578 4_3:-45003188 Msa0642820:CDS
TTACTGCTACTTGTAGTTGT+TGG 0.413005 4_3:+45004918 None:intergenic
GCTCTCCAAATTGATGTCTA+AGG 0.413976 4_3:+45002800 None:intergenic
TGGATCCGTATCGCTGACTT+TGG 0.419631 4_3:-45002884 Msa0642820:CDS
TCCAAAGGGTTTCTGTGTAA+AGG 0.420893 4_3:+45009748 None:intergenic
AAAGAGAATAGTGGTGGTGA+TGG 0.422004 4_3:-45009013 Msa0642820:CDS
GCAAATTTGTGGACAAATAG+AGG 0.424244 4_3:-45009502 Msa0642820:CDS
CATCATGGCATTTGGGGAGG+TGG 0.426888 4_3:-45009568 Msa0642820:CDS
AGGCAAGAAAGAGTTGGAAT+TGG 0.426992 4_3:+45009660 None:intergenic
CGGTTGGAACCTCAACTTTG+AGG 0.431524 4_3:+45002556 None:intergenic
AAGGCTTTAAGTATAGTAGT+TGG 0.435143 4_3:-45010029 Msa0642820:five_prime_UTR
CTCAAAGTTGAGGTTCCAAC+CGG 0.435913 4_3:-45002555 Msa0642820:three_prime_UTR
ATTGTTGCATAGCCAGTAAA+TGG 0.437686 4_3:+45009265 None:intergenic
CAGTGGCAATTCTTAAAGCT+TGG 0.440006 4_3:-45004731 Msa0642820:CDS
CACATGTTAGCTACTCAAAC+AGG 0.444126 4_3:-45003905 Msa0642820:CDS
ACATCTCTTGAAACCCATCT+TGG 0.448290 4_3:+45009139 None:intergenic
ACCTGCAGGCTTCAATAACT+TGG 0.448462 4_3:-45009878 Msa0642820:CDS
TCATCATTTGAGTCAGTAGC+TGG 0.449229 4_3:-45005074 Msa0642820:CDS
AGGCAATAACAATGTTGAAA+AGG 0.450410 4_3:-45003025 Msa0642820:CDS
CAAAAGAACAAATCTGGAGC+TGG 0.451287 4_3:-45004828 Msa0642820:CDS
TTAAGGAATGTTGGTCCACT+TGG 0.451509 4_3:-45009289 Msa0642820:CDS
GGATAGATAGGAAATGGAAG+TGG 0.461464 4_3:+45010702 None:intergenic
ATCATCAAGCATGTTGTTGT+TGG 0.462163 4_3:+45009834 None:intergenic
TCTTTCAGGTAACCCTCTCT+GGG 0.462284 4_3:+45004755 None:intergenic
GTTTCTGTGTAAAGGATTTG+AGG 0.473684 4_3:+45009756 None:intergenic
CTAATTAACCCACAAAATCA+TGG 0.474328 4_3:+45002770 None:intergenic
CTCCAAACATGCTGTTGTTG+AGG 0.475472 4_3:+45004780 None:intergenic
CAACCATTGGTTTCCATACA+CGG 0.478260 4_3:+45003175 None:intergenic
GCTAAATACAACGTGTTTCG+AGG 0.481842 4_3:-45002340 Msa0642820:three_prime_UTR
ATGTGTATTTCTTCAACCAT+TGG 0.483354 4_3:+45003162 None:intergenic
TAATAATAATGTTCCAAGAT+GGG 0.485516 4_3:-45009152 Msa0642820:CDS
GAGAATAGTGGTGGTGATGG+AGG 0.486943 4_3:-45009010 Msa0642820:CDS
CTAAAGATTTGGTGATGGAA+TGG 0.487377 4_3:-45002726 Msa0642820:three_prime_UTR
GGATCCGTATCGCTGACTTT+GGG 0.487993 4_3:-45002883 Msa0642820:CDS
GGTTGGAACCTCAACTTTGA+GGG 0.490077 4_3:+45002557 None:intergenic
ATACACATGCTTGAATCAAA+AGG 0.494309 4_3:-45003147 Msa0642820:CDS
TTTCTGTGTAAAGGATTTGA+GGG 0.495400 4_3:+45009757 None:intergenic
GATGGAATGGAAGGAATAAT+CGG 0.499895 4_3:-45002713 Msa0642820:three_prime_UTR
AAATTTGAAGATGAAGTTGA+GGG 0.503079 4_3:+45009385 None:intergenic
GATAGATAGGAAATGGAAGT+GGG 0.504038 4_3:+45010703 None:intergenic
AACTTCTTAGATTACCTTGG+TGG 0.504719 4_3:+45010655 None:intergenic
GAAAGTGGAGTTTCTGCAAA+AGG 0.505107 4_3:-45009085 Msa0642820:CDS
AAATATGGATTCAACAGTGA+TGG 0.505789 4_3:-45002926 Msa0642820:CDS
TCAAAAGAGAAAGAGAATAG+TGG 0.510959 4_3:-45009022 Msa0642820:CDS
GTAGTTGGAAATTTGGAATG+AGG 0.511929 4_3:-45010014 Msa0642820:exon
ACCAACAACACTAATTTCTA+GGG 0.513111 4_3:-45009335 Msa0642820:CDS
GTTCATGACAATATTCCAAA+GGG 0.513243 4_3:+45009734 None:intergenic
GCTACTTACTACTCGCAAAC+CGG 0.516743 4_3:+45002536 None:intergenic
GTGGTGGTGATGGAGGAATT+GGG 0.517374 4_3:-45009003 Msa0642820:CDS
ATCATGGCATTTGGGGAGGT+GGG 0.517411 4_3:-45009567 Msa0642820:CDS
AAGATAGATTCTTGTTTGTG+TGG 0.518155 4_3:+45010678 None:intergenic
ATGTGTTTATCAGTGTCTGT+AGG 0.521595 4_3:+45003923 None:intergenic
TCCAAGTTATTGAAGCCTGC+AGG 0.521736 4_3:+45009877 None:intergenic
ATAATAATAATGTTCCAAGA+TGG 0.522752 4_3:-45009153 Msa0642820:CDS
TGTGCAACATGCAATTGATC+TGG 0.523813 4_3:+45009991 None:intergenic
ATACCATCAACAAATGCAAA+TGG 0.525199 4_3:-45005102 Msa0642820:CDS
ATACCATAAAGCCGGTCGTA+GGG 0.525453 4_3:-45010296 Msa0642820:five_prime_UTR
AAAATTTGAAGATGAAGTTG+AGG 0.528817 4_3:+45009384 None:intergenic
ACTTTCAGTGTTTGGAAATG+GGG 0.530029 4_3:-45003056 Msa0642820:CDS
ATCAGTAGGCAAGAAAGAGT+TGG 0.531884 4_3:+45009654 None:intergenic
TCTGGTGGTGTTGATGAAAG+TGG 0.532409 4_3:-45009100 Msa0642820:CDS
AGTAGTGGTTTAAGGAATGT+TGG 0.534594 4_3:-45009298 Msa0642820:CDS
TGTGTTTATCAGTGTCTGTA+GGG 0.537038 4_3:+45003924 None:intergenic
GCAGCAACATCAGTTGCAGC+AGG 0.539152 4_3:-45002830 Msa0642820:CDS
GCTTCTTTAATGAATCATCA+TGG 0.540035 4_3:-45009583 Msa0642820:CDS
TATAACACAGGTTAATTGGA+AGG 0.543045 4_3:-45010346 Msa0642820:five_prime_UTR
ATGAATTGAGTCGTGGAGGT+TGG 0.544377 4_3:-45002652 Msa0642820:three_prime_UTR
TGGGTTTCAAGAGATGTTGT+TGG 0.544401 4_3:-45009133 Msa0642820:CDS
TAGCTGAATCAAGTAACAGT+AGG 0.546492 4_3:-45009711 Msa0642820:CDS
GAATTTGGATCCCCTACGAC+CGG 0.547159 4_3:+45010285 None:intergenic
CAATTTGCTGGAGAAACAAA+GGG 0.548315 4_3:-45002606 Msa0642820:three_prime_UTR
TTATTGAAGCCTGCAGGTTG+TGG 0.549648 4_3:+45009883 None:intergenic
TGTAATTACACAAACGTGGA+TGG 0.550671 4_3:+45002287 None:intergenic
GATACGGATCCACGTTGATA+CGG 0.551902 4_3:+45002895 None:intergenic
TTTACTGATTACAATCCTCA+AGG 0.552560 4_3:-45009445 Msa0642820:CDS
AATATGGATTCAACAGTGAT+GGG 0.554086 4_3:-45002925 Msa0642820:CDS
AGATTTGGTGATGGAATGGA+AGG 0.554279 4_3:-45002722 Msa0642820:three_prime_UTR
CACCAAACACCACAACCTGC+AGG 0.555881 4_3:-45009892 Msa0642820:CDS
CTCAACAACAGCATGTTTGG+AGG 0.557669 4_3:-45004779 Msa0642820:CDS
GGCAAAGCCCCTCAAAGTTG+AGG 0.558646 4_3:-45002565 Msa0642820:three_prime_UTR
CTAAATACAACGTGTTTCGA+GGG 0.561009 4_3:-45002339 Msa0642820:three_prime_UTR
AAAAGAACAAATCTGGAGCT+GGG 0.563662 4_3:-45004827 Msa0642820:CDS
TTGGCCAGAGTGAAATATGC+TGG 0.565493 4_3:-45002633 Msa0642820:three_prime_UTR
GACTGTACTACTAGTAGTAG+TGG 0.567360 4_3:-45009313 Msa0642820:CDS
ACAATTTGCTGGAGAAACAA+AGG 0.568223 4_3:-45002607 Msa0642820:three_prime_UTR
TTTGATTACCGGAGAATCAA+AGG 0.569161 4_3:-45010239 Msa0642820:intron
TTTAGAGCCAATGAAATGTA+TGG 0.569263 4_3:+45005035 None:intergenic
ATAGATTCTTGTTTGTGTGG+AGG 0.572433 4_3:+45010681 None:intergenic
TTGGCACTCTGGTCGAGAAG+AGG 0.572512 4_3:+45008955 None:intergenic
AGCTGAATCAAGTAACAGTA+GGG 0.574347 4_3:-45009710 Msa0642820:CDS
TTGGCCAGCATATTTCACTC+TGG 0.580288 4_3:+45002629 None:intergenic
AACCTGTGTTATATATATGT+CGG 0.583230 4_3:+45010356 None:intergenic
TTATTACAAACGAAGAGCAA+TGG 0.584359 4_3:-45003002 Msa0642820:CDS
AGTTTAGATGAATTGAGTCG+TGG 0.585775 4_3:-45002659 Msa0642820:three_prime_UTR
ATGTTTGGAGGCCCCAGAGA+GGG 0.586157 4_3:-45004767 Msa0642820:CDS
CTTACTACTCGCAAACCGGT+TGG 0.589023 4_3:+45002540 None:intergenic
AGATAGGAAATGGAAGTGGG+AGG 0.589107 4_3:+45010706 None:intergenic
AGTTCATGACAATATTCCAA+AGG 0.591381 4_3:+45009733 None:intergenic
GTTGGTTGTTCTAGTTCTGG+TGG 0.593108 4_3:-45009115 Msa0642820:CDS
GAAGACTTGAAAATATCAGT+AGG 0.595028 4_3:+45009640 None:intergenic
AAATTAGGAGAGACAAATTG+AGG 0.599560 4_3:-45009966 Msa0642820:CDS
GCTAGACAATACCATAAAGC+CGG 0.600661 4_3:-45010304 Msa0642820:five_prime_UTR
GTTGGAACCTCAACTTTGAG+GGG 0.601616 4_3:+45002558 None:intergenic
TTAATAATATTCAAGAGAAG+AGG 0.603624 4_3:-45002978 Msa0642820:CDS
GAGACCCAAAGTCAGCGATA+CGG 0.605617 4_3:+45002879 None:intergenic
TACCATAAAGCCGGTCGTAG+GGG 0.610839 4_3:-45010295 Msa0642820:five_prime_UTR
ATGAATCATCATGGCATTTG+GGG 0.611041 4_3:-45009574 Msa0642820:CDS
TCTTCTAACAACTCTTGACA+AGG 0.615926 4_3:+45009217 None:intergenic
AATTGATATAGGTTACAAGA+AGG 0.616269 4_3:-45005133 Msa0642820:intron
CTTGATGATCATGATCATGA+AGG 0.617196 4_3:-45009820 Msa0642820:CDS
AAAGAGAAAGAGAATAGTGG+TGG 0.617298 4_3:-45009019 Msa0642820:CDS
ATTACACAAACGTGGATGGA+GGG 0.618066 4_3:+45002291 None:intergenic
AATACCATAAAGCCGGTCGT+AGG 0.624551 4_3:-45010297 Msa0642820:five_prime_UTR
AATTACACAAACGTGGATGG+AGG 0.628647 4_3:+45002290 None:intergenic
GCAACATCAGTTGCAGCAGG+AGG 0.630480 4_3:-45002827 Msa0642820:CDS
TTAGATGAATTGAGTCGTGG+AGG 0.632065 4_3:-45002656 Msa0642820:three_prime_UTR
AGTCCGTGTATGGAAACCAA+TGG 0.633260 4_3:-45003178 Msa0642820:CDS
TAAACTTTAAGTCTAGCGAA+AGG 0.635034 4_3:+45002676 None:intergenic
AACAGGTCTATCAAGAAACC+AGG 0.637050 4_3:-45003888 Msa0642820:intron
AACTTGTAATTACACAAACG+TGG 0.640679 4_3:+45002283 None:intergenic
CCATCAACAAATGCAAATGG+TGG 0.649972 4_3:-45005099 Msa0642820:CDS
TAGCCAGTAAATGGTCCAAG+TGG 0.657116 4_3:+45009274 None:intergenic
CTGACTTTGGGTCTCAGACA+CGG 0.667702 4_3:-45002871 Msa0642820:CDS
AATCATCATGGCATTTGGGG+AGG 0.668916 4_3:-45009571 Msa0642820:CDS
TACCGACATATATATAACAC+AGG 0.669110 4_3:-45010358 Msa0642820:five_prime_UTR
AAGTGGGAGGAAGCAAAGCA+AGG 0.670551 4_3:+45010719 None:intergenic
ATTACTGTACATGCACGATG+AGG 0.677646 4_3:-45008918 Msa0642820:intron
AGGGTTACCTGAAAGATCAG+TGG 0.678566 4_3:-45004748 Msa0642820:CDS
AGTGACAAGGATAAACCTTG+AGG 0.680284 4_3:+45009430 None:intergenic
AAAGGTAGTAGTAATTCAGG+TGG 0.682385 4_3:-45009067 Msa0642820:CDS
CAAGAATCTATCTTCCACCA+AGG 0.683473 4_3:-45010669 Msa0642820:intron
TACATGTCAAGTATTAGGAG+AGG 0.684996 4_3:-45004955 Msa0642820:CDS
CATGTTTGGAGGCCCCAGAG+AGG 0.701806 4_3:-45004768 Msa0642820:CDS
TGAATTTGATGAAAGTGACA+AGG 0.713273 4_3:+45009417 None:intergenic
CTTTCAGGTAACCCTCTCTG+GGG 0.726576 4_3:+45004756 None:intergenic
TGGAAGGAATAATCGGAACG+AGG 0.742633 4_3:-45002706 Msa0642820:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATAATAATATTA+TGG + chr4_3:45002879-45002898 None:intergenic 0.0%
!! AAAAATAAAAATTTGATAGA+AGG + chr4_3:45002477-45002496 None:intergenic 10.0%
!! CAATAATATAAATTGTTTAT+TGG + chr4_3:45004271-45004290 None:intergenic 10.0%
!! AATAAAATCATACATAAAAA+GGG + chr4_3:45004333-45004352 None:intergenic 10.0%
!! AAATAAAATCATACATAAAA+AGG + chr4_3:45004334-45004353 None:intergenic 10.0%
!!! TACTGTTTTAATTTTAAAAA+AGG - chr4_3:45004425-45004444 Msa0642820:intron 10.0%
!! ATAAAAAATTATATATTGGT+AGG + chr4_3:45004746-45004765 None:intergenic 10.0%
!!! ACCAATATATAATTTTTTAT+TGG - chr4_3:45004746-45004765 Msa0642820:CDS 10.0%
!! TCCAATAAAAAATTATATAT+TGG + chr4_3:45004750-45004769 None:intergenic 10.0%
!!! TCAGATTTTTATTTATTTTT+AGG - chr4_3:45004828-45004847 Msa0642820:CDS 10.0%
!!! TTTTATTTATTTTTAGGTTT+TGG - chr4_3:45004834-45004853 Msa0642820:CDS 10.0%
!!! TTTATTTATTTTTAGGTTTT+GGG - chr4_3:45004835-45004854 Msa0642820:CDS 10.0%
!! TTACTTTAATATAATAATTG+TGG - chr4_3:45007034-45007053 Msa0642820:intron 10.0%
!!! AATTAGTTTAATATTGTTTA+AGG - chr4_3:45007542-45007561 Msa0642820:intron 10.0%
!! ATAATAATAATAATATGACA+AGG - chr4_3:45008114-45008133 Msa0642820:intron 10.0%
!! TTAAATTATATAAGTATGTA+CGG - chr4_3:45008347-45008366 Msa0642820:intron 10.0%
!!! AAAAAACATTTTTTAAAATG+GGG + chr4_3:45008437-45008456 None:intergenic 10.0%
!!! CAAAAAACATTTTTTAAAAT+GGG + chr4_3:45008438-45008457 None:intergenic 10.0%
!!! TAAAAAATTTTGTAATTTGT+AGG + chr4_3:45008600-45008619 None:intergenic 10.0%
!!! TGTTTTATGAATATAATAAA+AGG - chr4_3:45009002-45009021 Msa0642820:CDS 10.0%
!! ATTTAAATTTAATGTGATAT+TGG - chr4_3:45010751-45010770 Msa0642820:five_prime_UTR 10.0%
!! TTTAAATTTAATGTGATATT+GGG - chr4_3:45010752-45010771 Msa0642820:five_prime_UTR 10.0%
!!! TAAAGAATATTTCTTCTTTT+AGG + chr4_3:45004192-45004211 None:intergenic 15.0%
!!! TTATTTATTTTTAGGTTTTG+GGG - chr4_3:45004836-45004855 Msa0642820:CDS 15.0%
!! ATAAAAAAACATATTCGATA+TGG + chr4_3:45005005-45005024 None:intergenic 15.0%
!! AAAATAAGGACAAAATAAAT+TGG - chr4_3:45005223-45005242 Msa0642820:intron 15.0%
!! AAATTGGAAACAATTTATAT+AGG - chr4_3:45005239-45005258 Msa0642820:intron 15.0%
!! AATTGGAAACAATTTATATA+GGG - chr4_3:45005240-45005259 Msa0642820:intron 15.0%
!!! TCTAACATTTACTATTTTAT+TGG - chr4_3:45005424-45005443 Msa0642820:intron 15.0%
!!! CTAACATTTACTATTTTATT+GGG - chr4_3:45005425-45005444 Msa0642820:intron 15.0%
!! GAATAAAGATAAAACAAATT+AGG + chr4_3:45005629-45005648 None:intergenic 15.0%
!! AGTAAAAAACAAAACTAATA+TGG + chr4_3:45006373-45006392 None:intergenic 15.0%
!! TTATTTATAAATCATGCTAA+TGG - chr4_3:45006640-45006659 Msa0642820:intron 15.0%
!!! AAAACTCTAAAAAAGTTTTT+AGG - chr4_3:45006914-45006933 Msa0642820:intron 15.0%
!!! AAACTCTAAAAAAGTTTTTA+GGG - chr4_3:45006915-45006934 Msa0642820:intron 15.0%
!! TAGAATATACTATATATAGT+TGG - chr4_3:45007814-45007833 Msa0642820:intron 15.0%
!!! ACTTTGTTTTTTTGAAAATA+TGG + chr4_3:45008408-45008427 None:intergenic 15.0%
!!! CCAAAAAACATTTTTTAAAA+TGG + chr4_3:45008439-45008458 None:intergenic 15.0%
!!! CCATTTTAAAAAATGTTTTT+TGG - chr4_3:45008436-45008455 Msa0642820:intron 15.0%
!! AAATTGTAGAAATTATTGTA+AGG - chr4_3:45008639-45008658 Msa0642820:intron 15.0%
!!! TTTCAATGCATAATTTTTTA+GGG + chr4_3:45008959-45008978 None:intergenic 15.0%
!!! ATTTCAATGCATAATTTTTT+AGG + chr4_3:45008960-45008979 None:intergenic 15.0%
!!! AACATAAGATATATTGTTTT+AGG + chr4_3:45008986-45009005 None:intergenic 15.0%
!!! TTTTATATTATTTCTCTTGA+TGG - chr4_3:45009149-45009168 Msa0642820:CDS 15.0%
!!! AATTATTGATTTGAAAATCA+AGG + chr4_3:45009216-45009235 None:intergenic 15.0%
!! TGTAATAACTGATAAATAAT+AGG - chr4_3:45009769-45009788 Msa0642820:CDS 15.0%
!! ATAAATAATAGGTATCAAAT+TGG - chr4_3:45009780-45009799 Msa0642820:CDS 15.0%
!! TATATATAACACAGGTTAAT+TGG - chr4_3:45002645-45002664 Msa0642820:three_prime_UTR 20.0%
!!! ATTTTTTTTTCAGCTTTGAA+AGG - chr4_3:45002947-45002966 Msa0642820:CDS 20.0%
!! ATAATAATAATGTTCCAAGA+TGG - chr4_3:45003842-45003861 Msa0642820:intron 20.0%
!! TAATAATAATGTTCCAAGAT+GGG - chr4_3:45003843-45003862 Msa0642820:intron 20.0%
!! TAAAATAAAACAGACTACAA+GGG + chr4_3:45004128-45004147 None:intergenic 20.0%
!!! TTTTTTAATATGTGCTCTAA+GGG + chr4_3:45004169-45004188 None:intergenic 20.0%
!! GACAAAATTGTATTATTATG+TGG - chr4_3:45004589-45004608 Msa0642820:intron 20.0%
!!! GAATTTTTTTTGTCTGATAT+TGG - chr4_3:45004688-45004707 Msa0642820:intron 20.0%
!!! TATTTATTTTTAGGTTTTGG+GGG - chr4_3:45004837-45004856 Msa0642820:CDS 20.0%
!!! TCATTTTCTTTTGAAATCTT+GGG - chr4_3:45004953-45004972 Msa0642820:CDS 20.0%
!!! TTTTCTACACTTTTTGAAAA+TGG + chr4_3:45005147-45005166 None:intergenic 20.0%
!! AGATCTATCAAATCAAAATA+AGG - chr4_3:45005209-45005228 Msa0642820:intron 20.0%
!! ATTCGTGAAAACAAAAAAAA+AGG - chr4_3:45005320-45005339 Msa0642820:intron 20.0%
!!! ACAAATTTTCTCAAATCATA+TGG - chr4_3:45005741-45005760 Msa0642820:intron 20.0%
!! AACAAAACACTTAGAAAAAT+GGG + chr4_3:45005865-45005884 None:intergenic 20.0%
!! AAACAAAACACTTAGAAAAA+TGG + chr4_3:45005866-45005885 None:intergenic 20.0%
!!! TTTTCTAAGTGTTTTGTTTA+TGG - chr4_3:45005867-45005886 Msa0642820:intron 20.0%
!!! CTATTTTCTCAAATTATTAC+TGG - chr4_3:45006164-45006183 Msa0642820:intron 20.0%
!!! TTGTTTTTTACTTAGTTTGA+TGG - chr4_3:45006381-45006400 Msa0642820:intron 20.0%
!!! TCTCTAAAACCTTTATATTA+TGG - chr4_3:45006491-45006510 Msa0642820:intron 20.0%
!! TAGCATGATTTATAAATAAC+TGG + chr4_3:45006639-45006658 None:intergenic 20.0%
!! TCGTTAAAATTTAGTTGTAT+CGG - chr4_3:45007565-45007584 Msa0642820:intron 20.0%
!! ACTATATATAGTTGGAAAAA+TGG - chr4_3:45007822-45007841 Msa0642820:intron 20.0%
!! TAGTAATGTTGAATTGATAT+AGG - chr4_3:45007851-45007870 Msa0642820:intron 20.0%
!!! TCTTCTGACTTTTTTAAAAT+AGG - chr4_3:45008481-45008500 Msa0642820:intron 20.0%
!!! CTTCTGACTTTTTTAAAATA+GGG - chr4_3:45008482-45008501 Msa0642820:intron 20.0%
!!! TTCTGACTTTTTTAAAATAG+GGG - chr4_3:45008483-45008502 Msa0642820:intron 20.0%
!!! AACAACGAGTTAATTTTATA+AGG - chr4_3:45008668-45008687 Msa0642820:intron 20.0%
!!! TAATACTTTTTCATACAACA+TGG + chr4_3:45008893-45008912 None:intergenic 20.0%
!!! TGTATGAAAAAGTATTATGA+AGG - chr4_3:45008896-45008915 Msa0642820:intron 20.0%
!! ACAATAAAAACAAAGTAGTA+CGG + chr4_3:45009391-45009410 None:intergenic 20.0%
!!! ATTTTCTGCAATTTGAATTA+TGG - chr4_3:45009466-45009485 Msa0642820:CDS 20.0%
!! TCAAAACAATGATAAAAATG+AGG - chr4_3:45009889-45009908 Msa0642820:CDS 20.0%
!! TTAATAATATTCAAGAGAAG+AGG - chr4_3:45010017-45010036 Msa0642820:exon 20.0%
!!! TATCATGTTTTCTAAAGATT+TGG - chr4_3:45010258-45010277 Msa0642820:five_prime_UTR 20.0%
!! TTGTTAAGCTTTAGCATATA+CGG + chr4_3:45002574-45002593 None:intergenic 25.0%
!!! TTGTTTTTGTCTTCTTCTTT+AGG - chr4_3:45002595-45002614 Msa0642820:three_prime_UTR 25.0%
! AACCTGTGTTATATATATGT+CGG + chr4_3:45002642-45002661 None:intergenic 25.0%
!!! TTTTCTTTGGTTTTGATTAC+CGG - chr4_3:45002745-45002764 Msa0642820:three_prime_UTR 25.0%
! AAGTATAGTAGTTGGAAATT+TGG - chr4_3:45002974-45002993 Msa0642820:CDS 25.0%
!! AATTGTTCAATGTTGTTGTT+AGG + chr4_3:45003073-45003092 None:intergenic 25.0%
! TCATGAAATACAGGTATAAT+AGG + chr4_3:45003466-45003485 None:intergenic 25.0%
! ATGAAAATCAAGCAAATTTG+TGG - chr4_3:45003482-45003501 Msa0642820:intron 25.0%
! AAATTTGAAGATGAAGTTGA+GGG + chr4_3:45003613-45003632 None:intergenic 25.0%
! AAAATTTGAAGATGAAGTTG+AGG + chr4_3:45003614-45003633 None:intergenic 25.0%
!!! CAACAATTTTGAAGAATTCA+AGG - chr4_3:45003746-45003765 Msa0642820:intron 25.0%
! CTAAAATAAAACAGACTACA+AGG + chr4_3:45004129-45004148 None:intergenic 25.0%
!!! GTTTTTTAATATGTGCTCTA+AGG + chr4_3:45004170-45004189 None:intergenic 25.0%
! TAACTTAATTAATGTCTGTC+AGG - chr4_3:45004388-45004407 Msa0642820:intron 25.0%
! AAAAAAAAGAAGAAGAAGCT+AGG - chr4_3:45004542-45004561 Msa0642820:intron 25.0%
!!! TGGTATATTTTTTCAAGACA+TGG - chr4_3:45004609-45004628 Msa0642820:intron 25.0%
! TGATATTGGATTTCTATTCT+TGG - chr4_3:45004702-45004721 Msa0642820:intron 25.0%
! CTTACTATTATTGCAAATCT+AGG - chr4_3:45004791-45004810 Msa0642820:CDS 25.0%
! AATAACATAATAGGACAGAA+TGG + chr4_3:45004882-45004901 None:intergenic 25.0%
! CAATGCAAGAATAACATAAT+AGG + chr4_3:45004891-45004910 None:intergenic 25.0%
!!! CTCATTTTCTTTTGAAATCT+TGG - chr4_3:45004952-45004971 Msa0642820:CDS 25.0%
!! TCTAAAAGTTGTGATTTTAC+GGG + chr4_3:45005088-45005107 None:intergenic 25.0%
!!! CTCTAAAAGTTGTGATTTTA+CGG + chr4_3:45005089-45005108 None:intergenic 25.0%
! TTGGCAAAAAATTTCAACAA+AGG - chr4_3:45005360-45005379 Msa0642820:intron 25.0%
!! TTTATTCTATTTTCTGTCTG+TGG - chr4_3:45005642-45005661 Msa0642820:intron 25.0%
!! TTATTCTATTTTCTGTCTGT+GGG - chr4_3:45005643-45005662 Msa0642820:intron 25.0%
!! CAAATCATATGGATATTTTC+TGG - chr4_3:45005752-45005771 Msa0642820:intron 25.0%
!! ATGTTGATTGTATTTAGGTT+TGG - chr4_3:45005778-45005797 Msa0642820:intron 25.0%
!! TTTGCTTTCTAAGAAACATA+TGG - chr4_3:45005933-45005952 Msa0642820:intron 25.0%
! AATGATACATGTTATTCACA+TGG - chr4_3:45006015-45006034 Msa0642820:intron 25.0%
! ATGATACATGTTATTCACAT+GGG - chr4_3:45006016-45006035 Msa0642820:intron 25.0%
! CTTTGTGTTAAATATTCCAA+AGG - chr4_3:45006276-45006295 Msa0642820:intron 25.0%
! TTAAGAATAGAGTTTGAACT+TGG + chr4_3:45006310-45006329 None:intergenic 25.0%
! AACAAAACTAATATGGTACA+AGG + chr4_3:45006366-45006385 None:intergenic 25.0%
! CAATTACAGCCATAATATAA+AGG + chr4_3:45006503-45006522 None:intergenic 25.0%
! TATTACATAACTTTCCTTGT+TGG - chr4_3:45007197-45007216 Msa0642820:intron 25.0%
! ATATTTATACATTCATCTCG+AGG + chr4_3:45007247-45007266 None:intergenic 25.0%
! ATAGAAAGAACACAAATCAT+AGG - chr4_3:45007274-45007293 Msa0642820:intron 25.0%
! TAGAAAGAACACAAATCATA+GGG - chr4_3:45007275-45007294 Msa0642820:intron 25.0%
!! ACAGAAGGTGTAAATTATTA+AGG + chr4_3:45007349-45007368 None:intergenic 25.0%
!! ATTTGAACTTTTTGAACAGA+AGG + chr4_3:45007364-45007383 None:intergenic 25.0%
! CAATAATACAACCAAGAAAT+TGG + chr4_3:45007447-45007466 None:intergenic 25.0%
!!! CATCGACTAAAACAAATTTT+CGG + chr4_3:45007495-45007514 None:intergenic 25.0%
! CACTTTATAAAGTGATTCTA+AGG + chr4_3:45007619-45007638 None:intergenic 25.0%
! ACTTTATAAAGTGTATCATG+CGG - chr4_3:45007626-45007645 Msa0642820:intron 25.0%
! AATTGATATAGGTTACAAGA+AGG - chr4_3:45007862-45007881 Msa0642820:intron 25.0%
! AAACTTACATGTCAAGTATT+AGG - chr4_3:45008035-45008054 Msa0642820:intron 25.0%
!! ATTTGTTCTTTTGTAAGCTA+TGG + chr4_3:45008160-45008179 None:intergenic 25.0%
!! ATGTACGGATTAAATATGTT+TGG - chr4_3:45008362-45008381 Msa0642820:intron 25.0%
! CAATTTACAAAACTACATGT+AGG + chr4_3:45008625-45008644 None:intergenic 25.0%
! ATGCAAGATTTATTTCACTT+GGG + chr4_3:45008720-45008739 None:intergenic 25.0%
! CATGGTTAAATATGGTATTA+GGG + chr4_3:45008875-45008894 None:intergenic 25.0%
! ACATGGTTAAATATGGTATT+AGG + chr4_3:45008876-45008895 None:intergenic 25.0%
! TCATACAACATGGTTAAATA+TGG + chr4_3:45008883-45008902 None:intergenic 25.0%
!!! AATGCATAATTTTTTAGGGT+GGG + chr4_3:45008955-45008974 None:intergenic 25.0%
!! TTTGAAAACTTCGAAGTTTT+GGG + chr4_3:45009276-45009295 None:intergenic 25.0%
!! ATTTGAAAACTTCGAAGTTT+TGG + chr4_3:45009277-45009296 None:intergenic 25.0%
!! TAATTGTTCCTTGATTGTTT+TGG - chr4_3:45009300-45009319 Msa0642820:CDS 25.0%
! AATGAAAACCAAAACAATCA+AGG + chr4_3:45009311-45009330 None:intergenic 25.0%
!!! TATTATGTGTCATTTTGTTG+AGG - chr4_3:45009692-45009711 Msa0642820:CDS 25.0%
! AAGATAGATTCTTGTTTGTG+TGG + chr4_3:45002320-45002339 None:intergenic 30.0%
AGAAACTTCTTAGATTACCT+TGG + chr4_3:45002346-45002365 None:intergenic 30.0%
CTCTCTTATAACAACTCAAA+TGG + chr4_3:45002523-45002542 None:intergenic 30.0%
AGTTGTTATAAGAGAGATCA+AGG - chr4_3:45002527-45002546 Msa0642820:three_prime_UTR 30.0%
GTTGTTATAAGAGAGATCAA+GGG - chr4_3:45002528-45002547 Msa0642820:three_prime_UTR 30.0%
TACCGACATATATATAACAC+AGG - chr4_3:45002637-45002656 Msa0642820:three_prime_UTR 30.0%
TATAACACAGGTTAATTGGA+AGG - chr4_3:45002649-45002668 Msa0642820:three_prime_UTR 30.0%
!! AAGGCTTTAAGTATAGTAGT+TGG - chr4_3:45002966-45002985 Msa0642820:CDS 30.0%
AAATTAGGAGAGACAAATTG+AGG - chr4_3:45003029-45003048 Msa0642820:CDS 30.0%
TTTCTGTGTAAAGGATTTGA+GGG + chr4_3:45003241-45003260 None:intergenic 30.0%
GTTCATGACAATATTCCAAA+GGG + chr4_3:45003264-45003283 None:intergenic 30.0%
AGTTCATGACAATATTCCAA+AGG + chr4_3:45003265-45003284 None:intergenic 30.0%
GAAGACTTGAAAATATCAGT+AGG + chr4_3:45003358-45003377 None:intergenic 30.0%
! TGAAGTACTATGTGAACTAA+TGG + chr4_3:45003386-45003405 None:intergenic 30.0%
TTCACATAGTACTTCAGAAA+TGG - chr4_3:45003390-45003409 Msa0642820:intron 30.0%
GCTTCTTTAATGAATCATCA+TGG - chr4_3:45003412-45003431 Msa0642820:intron 30.0%
TAATGAATCATCATGGCATT+TGG - chr4_3:45003419-45003438 Msa0642820:intron 30.0%
AATGAATCATCATGGCATTT+GGG - chr4_3:45003420-45003439 Msa0642820:intron 30.0%
! GCTTGATTTTCATGAAATAC+AGG + chr4_3:45003475-45003494 None:intergenic 30.0%
! TTTACTGATTACAATCCTCA+AGG - chr4_3:45003550-45003569 Msa0642820:intron 30.0%
TGAATTTGATGAAAGTGACA+AGG + chr4_3:45003581-45003600 None:intergenic 30.0%
AACCAACAACACTAATTTCT+AGG - chr4_3:45003659-45003678 Msa0642820:intron 30.0%
ACCAACAACACTAATTTCTA+GGG - chr4_3:45003660-45003679 Msa0642820:intron 30.0%
TCAAAAGAGAAAGAGAATAG+TGG - chr4_3:45003973-45003992 Msa0642820:intron 30.0%
!!! GTAATTGAGCCTTATTCTTT+TGG + chr4_3:45004062-45004081 None:intergenic 30.0%
!!! GTCTTTTACTGTTGATTCAA+AGG - chr4_3:45004478-45004497 Msa0642820:intron 30.0%
ATGGTTAAGTTTGTAGCTTA+TGG - chr4_3:45004628-45004647 Msa0642820:intron 30.0%
AGCTTATGGATTTCTTAGAT+TGG - chr4_3:45004642-45004661 Msa0642820:intron 30.0%
! CTAAAAGTTGTGATTTTACG+GGG + chr4_3:45005087-45005106 None:intergenic 30.0%
! ATATAGTTCTTTTATCCCCT+AGG + chr4_3:45005189-45005208 None:intergenic 30.0%
!!! GGTGTGAAATAAGAGTATTT+TGG - chr4_3:45005341-45005360 Msa0642820:intron 30.0%
! TATTCTATTTTCTGTCTGTG+GGG - chr4_3:45005644-45005663 Msa0642820:intron 30.0%
!! TTAGCTTTGATTTGACATTG+TGG - chr4_3:45005694-45005713 Msa0642820:intron 30.0%
! TGTTGGTTATTTGGTATTTG+AGG - chr4_3:45005717-45005736 Msa0642820:intron 30.0%
! GGTGAATGTTGATTGTATTT+AGG - chr4_3:45005773-45005792 Msa0642820:intron 30.0%
! ATTGTATTTAGGTTTGGTCT+TGG - chr4_3:45005784-45005803 Msa0642820:intron 30.0%
!!! TAAGTGTTTTGTTTATGGCT+TGG - chr4_3:45005872-45005891 Msa0642820:intron 30.0%
! TTTATGTGTCAGTGTTTTGT+TGG + chr4_3:45006128-45006147 None:intergenic 30.0%
TAATATGGTACAAGGAAAAG+TGG + chr4_3:45006358-45006377 None:intergenic 30.0%
!! CCAAAAAAGCATTCTTGTTT+GGG + chr4_3:45006673-45006692 None:intergenic 30.0%
!! TCCAAAAAAGCATTCTTGTT+TGG + chr4_3:45006674-45006693 None:intergenic 30.0%
AATGAATAGACACAGTTGAA+GGG + chr4_3:45006875-45006894 None:intergenic 30.0%
AAATGAATAGACACAGTTGA+AGG + chr4_3:45006876-45006895 None:intergenic 30.0%
TTGCATCAACTAACTCAAAT+TGG - chr4_3:45006952-45006971 Msa0642820:intron 30.0%
! TGTAGTGATTGTTATTGATG+TGG - chr4_3:45007124-45007143 Msa0642820:intron 30.0%
AGTTCTTTATACTACCAACA+AGG + chr4_3:45007214-45007233 None:intergenic 30.0%
AGAAAGAACACAAATCATAG+GGG - chr4_3:45007276-45007295 Msa0642820:intron 30.0%
AGTAGATTATCTGATGCAAT+AGG - chr4_3:45007401-45007420 Msa0642820:intron 30.0%
! AAATTTTCGGTATGAAGTGT+CGG + chr4_3:45007482-45007501 None:intergenic 30.0%
! GTATCGGATTAATTTCAAGT+TGG - chr4_3:45007581-45007600 Msa0642820:intron 30.0%
TATAATAGCATGTGTCAATG+CGG + chr4_3:45007687-45007706 None:intergenic 30.0%
ATACCATCAACAAATGCAAA+TGG - chr4_3:45007893-45007912 Msa0642820:intron 30.0%
! TTTAGAGCCAATGAAATGTA+TGG + chr4_3:45007963-45007982 None:intergenic 30.0%
! GATCTGTGATAGCATTTTTA+AGG + chr4_3:45008010-45008029 None:intergenic 30.0%
AGCTTACAAAAGAACAAATC+TGG - chr4_3:45008161-45008180 Msa0642820:intron 30.0%
GAAGAAAAAAAGTGAAGTTG+AGG + chr4_3:45008463-45008482 None:intergenic 30.0%
GATGCAAGATTTATTTCACT+TGG + chr4_3:45008721-45008740 None:intergenic 30.0%
!!! ATGCATAATTTTTTAGGGTG+GGG + chr4_3:45008954-45008973 None:intergenic 30.0%
!!! CAATGCATAATTTTTTAGGG+TGG + chr4_3:45008956-45008975 None:intergenic 30.0%
! TGCTGTTCAATTTCATTTTC+AGG - chr4_3:45009046-45009065 Msa0642820:CDS 30.0%
TTCTATTTGACATACACTCT+TGG - chr4_3:45009175-45009194 Msa0642820:CDS 30.0%
TCAATAATTGCACTCTTGAA+TGG - chr4_3:45009227-45009246 Msa0642820:CDS 30.0%
TAGTCTTCAAAAACATTCCT+AGG + chr4_3:45009672-45009691 None:intergenic 30.0%
!!! GTATGTGAATTTTTTACTGC+TGG - chr4_3:45009738-45009757 Msa0642820:CDS 30.0%
ATGTGTATTTCTTCAACCAT+TGG + chr4_3:45009836-45009855 None:intergenic 30.0%
ATACACATGCTTGAATCAAA+AGG - chr4_3:45009848-45009867 Msa0642820:CDS 30.0%
AGGCAATAACAATGTTGAAA+AGG - chr4_3:45009970-45009989 Msa0642820:CDS 30.0%
TTATTACAAACGAAGAGCAA+TGG - chr4_3:45009993-45010012 Msa0642820:CDS 30.0%
TGATCAGATTACACCAAATA+TGG - chr4_3:45010054-45010073 Msa0642820:intron 30.0%
ATCACTGTTGAATCCATATT+TGG + chr4_3:45010070-45010089 None:intergenic 30.0%
AAATATGGATTCAACAGTGA+TGG - chr4_3:45010069-45010088 Msa0642820:intron 30.0%
AATATGGATTCAACAGTGAT+GGG - chr4_3:45010070-45010089 Msa0642820:intron 30.0%
CTAATTAACCCACAAAATCA+TGG + chr4_3:45010228-45010247 None:intergenic 30.0%
!!! GTTTTCTAAAGATTTGGTGA+TGG - chr4_3:45010264-45010283 Msa0642820:five_prime_UTR 30.0%
TAAACTTTAAGTCTAGCGAA+AGG + chr4_3:45010322-45010341 None:intergenic 30.0%
!! GGGATGTTTACTTTTAAACT+TGG - chr4_3:45010409-45010428 Msa0642820:intron 30.0%
!! TATAAGTTTTGTGTCACTGT+CGG + chr4_3:45010538-45010557 None:intergenic 30.0%
AACTTGTAATTACACAAACG+TGG + chr4_3:45010715-45010734 None:intergenic 30.0%
GATAGATAGGAAATGGAAGT+GGG + chr4_3:45002295-45002314 None:intergenic 35.0%
! ATAGATTCTTGTTTGTGTGG+AGG + chr4_3:45002317-45002336 None:intergenic 35.0%
AACTTCTTAGATTACCTTGG+TGG + chr4_3:45002343-45002362 None:intergenic 35.0%
GTGAATATACTAGATGTGAG+TGG - chr4_3:45002430-45002449 Msa0642820:three_prime_UTR 35.0%
TATACTAGATGTGAGTGGTT+TGG - chr4_3:45002435-45002454 Msa0642820:three_prime_UTR 35.0%
CTCAAATGGATCTAGTTGTT+GGG + chr4_3:45002509-45002528 None:intergenic 35.0%
ACTCAAATGGATCTAGTTGT+TGG + chr4_3:45002510-45002529 None:intergenic 35.0%
AAACTCGAGCGTTAAGAATT+TGG + chr4_3:45002728-45002747 None:intergenic 35.0%
TTTGATTACCGGAGAATCAA+AGG - chr4_3:45002756-45002775 Msa0642820:exon 35.0%
AACTTCTACCTTTGATTCTC+CGG + chr4_3:45002767-45002786 None:intergenic 35.0%
! GTAGTTGGAAATTTGGAATG+AGG - chr4_3:45002981-45003000 Msa0642820:CDS 35.0%
TGCATGTTGCACAACAAATT+AGG - chr4_3:45003014-45003033 Msa0642820:CDS 35.0%
TGTTAGGAAACTCTTGATTC+TGG + chr4_3:45003057-45003076 None:intergenic 35.0%
ATCATCAAGCATGTTGTTGT+TGG + chr4_3:45003164-45003183 None:intergenic 35.0%
! CTTGATGATCATGATCATGA+AGG - chr4_3:45003175-45003194 Msa0642820:CDS 35.0%
GTTTCTGTGTAAAGGATTTG+AGG + chr4_3:45003242-45003261 None:intergenic 35.0%
TAGCTGAATCAAGTAACAGT+AGG - chr4_3:45003284-45003303 Msa0642820:intron 35.0%
AGCTGAATCAAGTAACAGTA+GGG - chr4_3:45003285-45003304 Msa0642820:intron 35.0%
ATGAATCATCATGGCATTTG+GGG - chr4_3:45003421-45003440 Msa0642820:intron 35.0%
GCAAATTTGTGGACAAATAG+AGG - chr4_3:45003493-45003512 Msa0642820:intron 35.0%
TCCCTAGAAATTAGTGTTGT+TGG + chr4_3:45003664-45003683 None:intergenic 35.0%
CTACTAGTAGTAGTGGTTTA+AGG - chr4_3:45003689-45003708 Msa0642820:intron 35.0%
AGTAGTGGTTTAAGGAATGT+TGG - chr4_3:45003697-45003716 Msa0642820:intron 35.0%
ATTGTTGCATAGCCAGTAAA+TGG + chr4_3:45003733-45003752 None:intergenic 35.0%
TCTTCTAACAACTCTTGACA+AGG + chr4_3:45003781-45003800 None:intergenic 35.0%
GCAAAAGGTAGTAGTAATTC+AGG - chr4_3:45003925-45003944 Msa0642820:CDS 35.0%
AAAGGTAGTAGTAATTCAGG+TGG - chr4_3:45003928-45003947 Msa0642820:CDS 35.0%
GGTTCATCTTCAATGTTGTA+TGG - chr4_3:45003949-45003968 Msa0642820:intron 35.0%
AAAGAGAAAGAGAATAGTGG+TGG - chr4_3:45003976-45003995 Msa0642820:intron 35.0%
!! TTTCTTAGATTGGTCTGATG+TGG - chr4_3:45004652-45004671 Msa0642820:intron 35.0%
!!! TTATTTTTAGGTTTTGGGGG+TGG - chr4_3:45004840-45004859 Msa0642820:CDS 35.0%
!!! TATTTTTAGGTTTTGGGGGT+GGG - chr4_3:45004841-45004860 Msa0642820:CDS 35.0%
TTTATTGGGTGAAACTCATG+CGG - chr4_3:45005439-45005458 Msa0642820:intron 35.0%
! AAGACTCGCTCTTTTATTGA+GGG + chr4_3:45005514-45005533 None:intergenic 35.0%
! TAAGACTCGCTCTTTTATTG+AGG + chr4_3:45005515-45005534 None:intergenic 35.0%
! TTGATTTGACATTGTGGTGT+TGG - chr4_3:45005700-45005719 Msa0642820:intron 35.0%
!! ACATTGTGGTGTTGGTTATT+TGG - chr4_3:45005708-45005727 Msa0642820:intron 35.0%
ACAAACCAGTTGTGAAACAT+GGG + chr4_3:45005904-45005923 None:intergenic 35.0%
TACAAACCAGTTGTGAAACA+TGG + chr4_3:45005905-45005924 None:intergenic 35.0%
GATGCAAATTAATCCACCTA+TGG - chr4_3:45006040-45006059 Msa0642820:intron 35.0%
CTGGTTTATATGCGTAGTAT+CGG - chr4_3:45006071-45006090 Msa0642820:intron 35.0%
! ATTATTACTGGTGTCAGTGT+AGG - chr4_3:45006176-45006195 Msa0642820:intron 35.0%
! TTAGATGTTGAAGTATCCCA+TGG - chr4_3:45006238-45006257 Msa0642820:intron 35.0%
GTAATAGAAGAATCTGCCAT+GGG + chr4_3:45006257-45006276 None:intergenic 35.0%
AGTAATAGAAGAATCTGCCA+TGG + chr4_3:45006258-45006277 None:intergenic 35.0%
! AGTTTGATGGAGAAGAGTAT+TGG - chr4_3:45006394-45006413 Msa0642820:intron 35.0%
!! AAGCATTCTTGTTTGGGTTT+TGG + chr4_3:45006667-45006686 None:intergenic 35.0%
!!! CCCAAACAAGAATGCTTTTT+TGG - chr4_3:45006670-45006689 Msa0642820:intron 35.0%
AATACTTCCATGACTTTGCT+TGG - chr4_3:45006695-45006714 Msa0642820:intron 35.0%
ATACTTCCATGACTTTGCTT+GGG - chr4_3:45006696-45006715 Msa0642820:intron 35.0%
! TTAGTTGATGCAACTAGGTA+GGG + chr4_3:45006945-45006964 None:intergenic 35.0%
! TTGAGTTAGTTGATGCAACT+AGG + chr4_3:45006950-45006969 None:intergenic 35.0%
AATAGTGTTCTTACAGTGCA+TGG - chr4_3:45007148-45007167 Msa0642820:intron 35.0%
TGTTGTCTTGACCAATTTCT+TGG - chr4_3:45007433-45007452 Msa0642820:intron 35.0%
ATGCTAACCACATGAACAAT+CGG + chr4_3:45007765-45007784 None:intergenic 35.0%
AGCTACACCATACATTTCAT+TGG - chr4_3:45007953-45007972 Msa0642820:intron 35.0%
TACATGTCAAGTATTAGGAG+AGG - chr4_3:45008040-45008059 Msa0642820:intron 35.0%
! TTACTGCTACTTGTAGTTGT+TGG + chr4_3:45008080-45008099 None:intergenic 35.0%
! AAAAGAACAAATCTGGAGCT+GGG - chr4_3:45008168-45008187 Msa0642820:intron 35.0%
AGAGTGACAGAGAAAACATA+CGG + chr4_3:45008311-45008330 None:intergenic 35.0%
TCACTTGGGCATTATAGAAT+TGG + chr4_3:45008706-45008725 None:intergenic 35.0%
TAGTAAAAAACACTTGCGCA+CGG - chr4_3:45008814-45008833 Msa0642820:intron 35.0%
!!! TGCATAATTTTTTAGGGTGG+GGG + chr4_3:45008953-45008972 None:intergenic 35.0%
TGTGTTTATCAGTGTCTGTA+GGG + chr4_3:45009074-45009093 None:intergenic 35.0%
ATGTGTTTATCAGTGTCTGT+AGG + chr4_3:45009075-45009094 None:intergenic 35.0%
ATTTGACATACACTCTTGGA+TGG - chr4_3:45009179-45009198 Msa0642820:CDS 35.0%
AATAGTAGTCTAGCTGCAAA+TGG + chr4_3:45009449-45009468 None:intergenic 35.0%
ACCATCAAATCAAGATCAGA+CGG + chr4_3:45009590-45009609 None:intergenic 35.0%
CACATTGCAGTTATGCAATT+TGG + chr4_3:45009613-45009632 None:intergenic 35.0%
CAAAAACATTCCTAGGAGAA+GGG + chr4_3:45009665-45009684 None:intergenic 35.0%
TCAAAAACATTCCTAGGAGA+AGG + chr4_3:45009666-45009685 None:intergenic 35.0%
!! TGAAAAGCACTTTCAGTGTT+TGG - chr4_3:45009931-45009950 Msa0642820:CDS 35.0%
CACTTTCAGTGTTTGGAAAT+GGG - chr4_3:45009938-45009957 Msa0642820:CDS 35.0%
ACTTTCAGTGTTTGGAAATG+GGG - chr4_3:45009939-45009958 Msa0642820:CDS 35.0%
GTAGACCTTAGACATCAATT+TGG - chr4_3:45010190-45010209 Msa0642820:intron 35.0%
! CACATGATCCATGATTTTGT+GGG - chr4_3:45010217-45010236 Msa0642820:intron 35.0%
!! CTAAAGATTTGGTGATGGAA+TGG - chr4_3:45010269-45010288 Msa0642820:five_prime_UTR 35.0%
GATGGAATGGAAGGAATAAT+CGG - chr4_3:45010282-45010301 Msa0642820:five_prime_UTR 35.0%
AGTTTAGATGAATTGAGTCG+TGG - chr4_3:45010336-45010355 Msa0642820:five_prime_UTR 35.0%
! TTGTTTCTCCAGCAAATTGT+TGG + chr4_3:45010388-45010407 None:intergenic 35.0%
!! ACAATTTGCTGGAGAAACAA+AGG - chr4_3:45010388-45010407 Msa0642820:intron 35.0%
!! CAATTTGCTGGAGAAACAAA+GGG - chr4_3:45010389-45010408 Msa0642820:intron 35.0%
CTAAATACAACGTGTTTCGA+GGG - chr4_3:45010656-45010675 Msa0642820:intron 35.0%
TGTAATTACACAAACGTGGA+TGG + chr4_3:45010711-45010730 None:intergenic 35.0%
GGATAGATAGGAAATGGAAG+TGG + chr4_3:45002296-45002315 None:intergenic 40.0%
TGTGGAGGATAGATAGGAAA+TGG + chr4_3:45002302-45002321 None:intergenic 40.0%
TGTTTGTGTGGAGGATAGAT+AGG + chr4_3:45002308-45002327 None:intergenic 40.0%
CAAGAATCTATCTTCCACCA+AGG - chr4_3:45002326-45002345 Msa0642820:three_prime_UTR 40.0%
GCTAGACAATACCATAAAGC+CGG - chr4_3:45002691-45002710 Msa0642820:three_prime_UTR 40.0%
! CTTAACGCTCGAGTTTTCTT+TGG - chr4_3:45002732-45002751 Msa0642820:three_prime_UTR 40.0%
TGTGCAACATGCAATTGATC+TGG + chr4_3:45003007-45003026 None:intergenic 40.0%
TCCTTTACACAGAAACCCTT+TGG - chr4_3:45003246-45003265 Msa0642820:intron 40.0%
TCCAAAGGGTTTCTGTGTAA+AGG + chr4_3:45003250-45003269 None:intergenic 40.0%
AGGCAAGAAAGAGTTGGAAT+TGG + chr4_3:45003338-45003357 None:intergenic 40.0%
ATCAGTAGGCAAGAAAGAGT+TGG + chr4_3:45003344-45003363 None:intergenic 40.0%
AGTGACAAGGATAAACCTTG+AGG + chr4_3:45003568-45003587 None:intergenic 40.0%
TGAAGATGAAGTTGAGGGTT+TGG + chr4_3:45003608-45003627 None:intergenic 40.0%
GACTGTACTACTAGTAGTAG+TGG - chr4_3:45003682-45003701 Msa0642820:intron 40.0%
TTAAGGAATGTTGGTCCACT+TGG - chr4_3:45003706-45003725 Msa0642820:intron 40.0%
ACATCTCTTGAAACCCATCT+TGG + chr4_3:45003859-45003878 None:intergenic 40.0%
TGGGTTTCAAGAGATGTTGT+TGG - chr4_3:45003862-45003881 Msa0642820:intron 40.0%
!! GTTGTTGGTTGTTCTAGTTC+TGG - chr4_3:45003877-45003896 Msa0642820:intron 40.0%
GAAAGTGGAGTTTCTGCAAA+AGG - chr4_3:45003910-45003929 Msa0642820:CDS 40.0%
! AAAGAGAATAGTGGTGGTGA+TGG - chr4_3:45003982-45004001 Msa0642820:intron 40.0%
! ACCAGAGTGCCAAAAGAATA+AGG - chr4_3:45004050-45004069 Msa0642820:intron 40.0%
ATTACTGTACATGCACGATG+AGG - chr4_3:45004077-45004096 Msa0642820:intron 40.0%
!!! ATTTTTAGGTTTTGGGGGTG+GGG - chr4_3:45004842-45004861 Msa0642820:CDS 40.0%
! AGTTCTTTTATCCCCTAGGA+GGG + chr4_3:45005185-45005204 None:intergenic 40.0%
! TAGTTCTTTTATCCCCTAGG+AGG + chr4_3:45005186-45005205 None:intergenic 40.0%
CATGATCCATTTCCAAAACG+TGG - chr4_3:45005478-45005497 Msa0642820:intron 40.0%
!!! TCACAACCACGTTTTGGAAA+TGG + chr4_3:45005487-45005506 None:intergenic 40.0%
AAACAATTGCACGACATGGT+TGG + chr4_3:45005842-45005861 None:intergenic 40.0%
GTATTCCCATGTTTCACAAC+TGG - chr4_3:45005896-45005915 Msa0642820:intron 40.0%
CAGAATGATGTTGTACTCAG+AGG - chr4_3:45006099-45006118 Msa0642820:intron 40.0%
TGTCGATGTCTATGTTTCGT+AGG - chr4_3:45006213-45006232 Msa0642820:intron 40.0%
!! GAACTTGGAAGCATTTCCTT+TGG + chr4_3:45006295-45006314 None:intergenic 40.0%
AAAAAAGCAGGGTTCCACTT+TGG + chr4_3:45006848-45006867 None:intergenic 40.0%
!!! AAAGTGGAACCCTGCTTTTT+TGG - chr4_3:45006847-45006866 Msa0642820:intron 40.0%
TGAAGGGTTCCAAAAAAGCA+GGG + chr4_3:45006859-45006878 None:intergenic 40.0%
TTGAAGGGTTCCAAAAAAGC+AGG + chr4_3:45006860-45006879 None:intergenic 40.0%
! GTTAGTTGATGCAACTAGGT+AGG + chr4_3:45006946-45006965 None:intergenic 40.0%
! CCACCATTTGCATTTGTTGA+TGG + chr4_3:45007899-45007918 None:intergenic 40.0%
CCATCAACAAATGCAAATGG+TGG - chr4_3:45007896-45007915 Msa0642820:intron 40.0%
TCATCATTTGAGTCAGTAGC+TGG - chr4_3:45007921-45007940 Msa0642820:intron 40.0%
! CAAAAGAACAAATCTGGAGC+TGG - chr4_3:45008167-45008186 Msa0642820:intron 40.0%
AACCTCAACAACAGCATGTT+TGG - chr4_3:45008213-45008232 Msa0642820:intron 40.0%
AGAATTGCCACTGATCTTTC+AGG + chr4_3:45008257-45008276 None:intergenic 40.0%
CAGTGGCAATTCTTAAAGCT+TGG - chr4_3:45008264-45008283 Msa0642820:intron 40.0%
!!! TTTTTTAGGGTGGGGGAAAT+TGG + chr4_3:45008946-45008965 None:intergenic 40.0%
CACATGTTAGCTACTCAAAC+AGG - chr4_3:45009090-45009109 Msa0642820:CDS 40.0%
AACAGGTCTATCAAGAAACC+AGG - chr4_3:45009107-45009126 Msa0642820:CDS 40.0%
CCATATTGCTTAGCTGCAAA+TGG + chr4_3:45009496-45009515 None:intergenic 40.0%
CCATTTGCAGCTAAGCAATA+TGG - chr4_3:45009493-45009512 Msa0642820:CDS 40.0%
AATGTGAGTCATCCATCTGA+TGG + chr4_3:45009524-45009543 None:intergenic 40.0%
! TCCGTCTGATCTTGATTTGA+TGG - chr4_3:45009586-45009605 Msa0642820:CDS 40.0%
TGATCTTTATCCCTTCTCCT+AGG - chr4_3:45009652-45009671 Msa0642820:CDS 40.0%
!! CAACCATTGGTTTCCATACA+CGG + chr4_3:45009823-45009842 None:intergenic 40.0%
AAAAATGAGGCATGCAGAGT+CGG - chr4_3:45009902-45009921 Msa0642820:CDS 40.0%
GCACTTTCAGTGTTTGGAAA+TGG - chr4_3:45009937-45009956 Msa0642820:CDS 40.0%
GCTCTCCAAATTGATGTCTA+AGG + chr4_3:45010198-45010217 None:intergenic 40.0%
! GCACATGATCCATGATTTTG+TGG - chr4_3:45010216-45010235 Msa0642820:intron 40.0%
!! AGATTTGGTGATGGAATGGA+AGG - chr4_3:45010273-45010292 Msa0642820:five_prime_UTR 40.0%
TTAGATGAATTGAGTCGTGG+AGG - chr4_3:45010339-45010358 Msa0642820:five_prime_UTR 40.0%
CAATGTTTCATTGTCGCGTT+CGG - chr4_3:45010605-45010624 Msa0642820:intron 40.0%
GCTAAATACAACGTGTTTCG+AGG - chr4_3:45010655-45010674 Msa0642820:intron 40.0%
! GTTTCGAGGGCTTTTCATTT+CGG - chr4_3:45010669-45010688 Msa0642820:intron 40.0%
ATTACACAAACGTGGATGGA+GGG + chr4_3:45010707-45010726 None:intergenic 40.0%
AATTACACAAACGTGGATGG+AGG + chr4_3:45010708-45010727 None:intergenic 40.0%
AGATAGGAAATGGAAGTGGG+AGG + chr4_3:45002292-45002311 None:intergenic 45.0%
AATACCATAAAGCCGGTCGT+AGG - chr4_3:45002698-45002717 Msa0642820:three_prime_UTR 45.0%
ATACCATAAAGCCGGTCGTA+GGG - chr4_3:45002699-45002718 Msa0642820:three_prime_UTR 45.0%
TTATTGAAGCCTGCAGGTTG+TGG + chr4_3:45003115-45003134 None:intergenic 45.0%
ACCTGCAGGCTTCAATAACT+TGG - chr4_3:45003117-45003136 Msa0642820:CDS 45.0%
TCCAAGTTATTGAAGCCTGC+AGG + chr4_3:45003121-45003140 None:intergenic 45.0%
AATCATCATGGCATTTGGGG+AGG - chr4_3:45003424-45003443 Msa0642820:intron 45.0%
TAGCCAGTAAATGGTCCAAG+TGG + chr4_3:45003724-45003743 None:intergenic 45.0%
!! GTTGGTTGTTCTAGTTCTGG+TGG - chr4_3:45003880-45003899 Msa0642820:intron 45.0%
!! TCTGGTGGTGTTGATGAAAG+TGG - chr4_3:45003895-45003914 Msa0642820:CDS 45.0%
!! GCCTTATTCTTTTGGCACTC+TGG + chr4_3:45004054-45004073 None:intergenic 45.0%
!!! TTTTTAGGTTTTGGGGGTGG+GGG - chr4_3:45004843-45004862 Msa0642820:CDS 45.0%
AGTGCCTATTATCCCTCCTA+GGG - chr4_3:45005170-45005189 Msa0642820:intron 45.0%
TATCCCCTAGGAGGGATAAT+AGG + chr4_3:45005177-45005196 None:intergenic 45.0%
! GGAAACTCACAACCACGTTT+TGG + chr4_3:45005493-45005512 None:intergenic 45.0%
CACACATACACACACTCACA+TGG - chr4_3:45005590-45005609 Msa0642820:intron 45.0%
! CTATTTTCTGTCTGTGGGGT+TGG - chr4_3:45005648-45005667 Msa0642820:intron 45.0%
TGGGGTTGGACATAACATAG+AGG - chr4_3:45005662-45005681 Msa0642820:intron 45.0%
TGGGAAACAATTGCACGACA+TGG + chr4_3:45005846-45005865 None:intergenic 45.0%
TAAACCAGTGCACAGTCCAT+AGG + chr4_3:45006059-45006078 None:intergenic 45.0%
! ACAGCTTAACGCAGTTGATG+TGG - chr4_3:45006436-45006455 Msa0642820:intron 45.0%
TAAAGCTCAGCCACATCTTG+TGG + chr4_3:45006536-45006555 None:intergenic 45.0%
CAAGATGTGGCTGAGCTTTA+AGG - chr4_3:45006536-45006555 Msa0642820:intron 45.0%
ATGACACCCAAGCAAAGTCA+TGG + chr4_3:45006705-45006724 None:intergenic 45.0%
! TGACTTTGCTTGGGTGTCAT+TGG - chr4_3:45006705-45006724 Msa0642820:intron 45.0%
!! TTGGGTGTCATTGGTGTCAT+TGG - chr4_3:45006714-45006733 Msa0642820:intron 45.0%
CACCCATCAACACACATCAA+CGG + chr4_3:45006751-45006770 None:intergenic 45.0%
! TTGATGTGTGTTGATGGGTG+TGG - chr4_3:45006751-45006770 Msa0642820:intron 45.0%
! TGATGTGTGTTGATGGGTGT+GGG - chr4_3:45006752-45006771 Msa0642820:intron 45.0%
TGTGATGTGTGTGTGTGTGA+TGG - chr4_3:45006783-45006802 Msa0642820:intron 45.0%
!! TTGTGTGCCATTGGTGTCAT+TGG + chr4_3:45006817-45006836 None:intergenic 45.0%
ACACCAATGGCACACAACTA+TGG - chr4_3:45006820-45006839 Msa0642820:intron 45.0%
ACACAACTATGGCACCAAAG+TGG - chr4_3:45006831-45006850 Msa0642820:intron 45.0%
CTGATGTCCGATTGTTCATG+TGG - chr4_3:45007755-45007774 Msa0642820:intron 45.0%
CTCCAAACATGCTGTTGTTG+AGG + chr4_3:45008218-45008237 None:intergenic 45.0%
CTCAACAACAGCATGTTTGG+AGG - chr4_3:45008216-45008235 Msa0642820:intron 45.0%
! TCTTTCAGGTAACCCTCTCT+GGG + chr4_3:45008243-45008262 None:intergenic 45.0%
! ATCTTTCAGGTAACCCTCTC+TGG + chr4_3:45008244-45008263 None:intergenic 45.0%
AGGGTTACCTGAAAGATCAG+TGG - chr4_3:45008247-45008266 Msa0642820:intron 45.0%
AGGTCTATCAAGAAACCAGG+TGG - chr4_3:45009110-45009129 Msa0642820:CDS 45.0%
GGTCTATCAAGAAACCAGGT+GGG - chr4_3:45009111-45009130 Msa0642820:CDS 45.0%
GTCTATCAAGAAACCAGGTG+GGG - chr4_3:45009112-45009131 Msa0642820:CDS 45.0%
TCTATCAAGAAACCAGGTGG+GGG - chr4_3:45009113-45009132 Msa0642820:CDS 45.0%
AATATGGACCGTCCATCAGA+TGG - chr4_3:45009509-45009528 Msa0642820:CDS 45.0%
TGAGTCATCCATCTGATGGA+CGG + chr4_3:45009520-45009539 None:intergenic 45.0%
GGGATAAAGATCACTTGCAG+CGG + chr4_3:45009645-45009664 None:intergenic 45.0%
AGTCCGTGTATGGAAACCAA+TGG - chr4_3:45009817-45009836 Msa0642820:CDS 45.0%
TTGGAAATGGGGTCATCTTC+AGG - chr4_3:45009950-45009969 Msa0642820:CDS 45.0%
!! GGTTTTATGCCGTATCAACG+TGG - chr4_3:45010091-45010110 Msa0642820:intron 45.0%
GATACGGATCCACGTTGATA+CGG + chr4_3:45010103-45010122 None:intergenic 45.0%
TGGAAGGAATAATCGGAACG+AGG - chr4_3:45010289-45010308 Msa0642820:five_prime_UTR 45.0%
ATGAATTGAGTCGTGGAGGT+TGG - chr4_3:45010343-45010362 Msa0642820:five_prime_UTR 45.0%
TTGGCCAGAGTGAAATATGC+TGG - chr4_3:45010362-45010381 Msa0642820:five_prime_UTR 45.0%
TTGGCCAGCATATTTCACTC+TGG + chr4_3:45010369-45010388 None:intergenic 45.0%
TATGCTGGCCAACAATTTGC+TGG - chr4_3:45010377-45010396 Msa0642820:five_prime_UTR 45.0%
GTTGGAACCTCAACTTTGAG+GGG + chr4_3:45010440-45010459 None:intergenic 45.0%
GGTTGGAACCTCAACTTTGA+GGG + chr4_3:45010441-45010460 None:intergenic 45.0%
CTCAAAGTTGAGGTTCCAAC+CGG - chr4_3:45010440-45010459 Msa0642820:intron 45.0%
GCTACTTACTACTCGCAAAC+CGG + chr4_3:45010462-45010481 None:intergenic 45.0%
!! TTTTGTGTCACTGTCGGACT+TGG + chr4_3:45010532-45010551 None:intergenic 45.0%
!! ATTATTATTATTATTATCAA+AGG + chr4_3:45003824-45003843 None:intergenic 5.0%
AAGTGGGAGGAAGCAAAGCA+AGG + chr4_3:45002279-45002298 None:intergenic 50.0%
!! AGAGAGATCAAGGGCTAGCT+AGG - chr4_3:45002537-45002556 Msa0642820:three_prime_UTR 50.0%
!! GAGAGATCAAGGGCTAGCTA+GGG - chr4_3:45002538-45002557 Msa0642820:three_prime_UTR 50.0%
TACCATAAAGCCGGTCGTAG+GGG - chr4_3:45002700-45002719 Msa0642820:three_prime_UTR 50.0%
GAATTTGGATCCCCTACGAC+CGG + chr4_3:45002713-45002732 None:intergenic 50.0%
ATCATGGCATTTGGGGAGGT+GGG - chr4_3:45003428-45003447 Msa0642820:intron 50.0%
GGTCCACTTGGACCATTTAC+TGG - chr4_3:45003718-45003737 Msa0642820:intron 50.0%
!! GAGAATAGTGGTGGTGATGG+AGG - chr4_3:45003985-45004004 Msa0642820:intron 50.0%
!! AGTGGTGGTGATGGAGGAAT+TGG - chr4_3:45003991-45004010 Msa0642820:intron 50.0%
!! GTGGTGGTGATGGAGGAATT+GGG - chr4_3:45003992-45004011 Msa0642820:intron 50.0%
GAGTGCCTATTATCCCTCCT+AGG - chr4_3:45005169-45005188 Msa0642820:intron 50.0%
GTGCCTATTATCCCTCCTAG+GGG - chr4_3:45005171-45005190 Msa0642820:intron 50.0%
! TGGTCTTGGATGTGACTGTG+TGG - chr4_3:45005798-45005817 Msa0642820:intron 50.0%
GGTCTTGGATGTGACTGTGT+GGG - chr4_3:45005799-45005818 Msa0642820:intron 50.0%
GTCTTGGATGTGACTGTGTG+GGG - chr4_3:45005800-45005819 Msa0642820:intron 50.0%
! AGTTGATGTGGCCGTTATCG+CGG - chr4_3:45006448-45006467 Msa0642820:intron 50.0%
CGACATTGCAACCGCGATAA+CGG + chr4_3:45006462-45006481 None:intergenic 50.0%
CAGTTGTGCACCACAAGATG+TGG - chr4_3:45006523-45006542 Msa0642820:intron 50.0%
!! TGGTGTCATTGGTGCAATCC+TGG - chr4_3:45006725-45006744 Msa0642820:intron 50.0%
ATCAACACACATCAACGGCC+AGG + chr4_3:45006746-45006765 None:intergenic 50.0%
TGGCCGTTGATGTGTGTTGA+TGG - chr4_3:45006745-45006764 Msa0642820:intron 50.0%
! GGCCGTTGATGTGTGTTGAT+GGG - chr4_3:45006746-45006765 Msa0642820:intron 50.0%
! GATGTGTGTTGATGGGTGTG+GGG - chr4_3:45006753-45006772 Msa0642820:intron 50.0%
! GTGTGTGTGTGTGATGGAGA+TGG - chr4_3:45006789-45006808 Msa0642820:intron 50.0%
GATGGCACCAATGACACCAA+TGG - chr4_3:45006807-45006826 Msa0642820:intron 50.0%
GTGCCATAGTTGTGTGCCAT+TGG + chr4_3:45006826-45006845 None:intergenic 50.0%
! CTTTCAGGTAACCCTCTCTG+GGG + chr4_3:45008242-45008261 None:intergenic 50.0%
GGGGGAAATTGGTCAGTAGT+AGG + chr4_3:45008935-45008954 None:intergenic 50.0%
AAAGATCACTTGCAGCGGCA+AGG + chr4_3:45009640-45009659 None:intergenic 50.0%
TAAACGCTCGAGTCCGTGTA+TGG - chr4_3:45009807-45009826 Msa0642820:CDS 50.0%
!! TGGATCCGTATCGCTGACTT+TGG - chr4_3:45010111-45010130 Msa0642820:intron 50.0%
!! GGATCCGTATCGCTGACTTT+GGG - chr4_3:45010112-45010131 Msa0642820:intron 50.0%
GAGACCCAAAGTCAGCGATA+CGG + chr4_3:45010119-45010138 None:intergenic 50.0%
CTGACTTTGGGTCTCAGACA+CGG - chr4_3:45010124-45010143 Msa0642820:intron 50.0%
CGGTTGGAACCTCAACTTTG+AGG + chr4_3:45010442-45010461 None:intergenic 50.0%
CTTACTACTCGCAAACCGGT+TGG + chr4_3:45010458-45010477 None:intergenic 50.0%
! ATCCCCTACGACCGGCTTTA+TGG + chr4_3:45002705-45002724 None:intergenic 55.0%
CACCAAACACCACAACCTGC+AGG - chr4_3:45003103-45003122 Msa0642820:CDS 55.0%
AGCCTGCAGGTTGTGGTGTT+TGG + chr4_3:45003108-45003127 None:intergenic 55.0%
CATCATGGCATTTGGGGAGG+TGG - chr4_3:45003427-45003446 Msa0642820:intron 55.0%
TTGGCACTCTGGTCGAGAAG+AGG + chr4_3:45004043-45004062 None:intergenic 55.0%
! TCCACCTATGGACTGTGCAC+TGG - chr4_3:45006052-45006071 Msa0642820:intron 55.0%
ACCAGTGCACAGTCCATAGG+TGG + chr4_3:45006056-45006075 None:intergenic 55.0%
ATGTTTGGAGGCCCCAGAGA+GGG - chr4_3:45008228-45008247 Msa0642820:intron 55.0%
TGAGTAAGTAGACCCCCACC+TGG + chr4_3:45009128-45009147 None:intergenic 55.0%
GCAGCAACATCAGTTGCAGC+AGG - chr4_3:45010165-45010184 Msa0642820:intron 55.0%
GCAACATCAGTTGCAGCAGG+AGG - chr4_3:45010168-45010187 Msa0642820:intron 55.0%
GGCAAAGCCCCTCAAAGTTG+AGG - chr4_3:45010430-45010449 Msa0642820:intron 55.0%
!!! TTAGGTTTTGGGGGTGGGGG+TGG - chr4_3:45004846-45004865 Msa0642820:CDS 60.0%
CATGTTTGGAGGCCCCAGAG+AGG - chr4_3:45008227-45008246 Msa0642820:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 45002242 45010775 45002242 ID=Msa0642820;Name=Msa0642820
chr4_3 mRNA 45002242 45010775 45002242 ID=Msa0642820-mRNA-1;Parent=Msa0642820;Name=Msa0642820-mRNA-1;_AED=0.00;_eAED=0.00;_QI=305|1|1|1|0.6|0.5|6|532|683
chr4_3 exon 45002242 45003226 45002242 ID=Msa0642820-mRNA-1:exon:10370;Parent=Msa0642820-mRNA-1
chr4_3 exon 45003889 45003949 45003889 ID=Msa0642820-mRNA-1:exon:10369;Parent=Msa0642820-mRNA-1
chr4_3 exon 45004708 45005144 45004708 ID=Msa0642820-mRNA-1:exon:10368;Parent=Msa0642820-mRNA-1
chr4_3 exon 45008919 45010057 45008919 ID=Msa0642820-mRNA-1:exon:10367;Parent=Msa0642820-mRNA-1
chr4_3 exon 45010240 45010400 45010240 ID=Msa0642820-mRNA-1:exon:10366;Parent=Msa0642820-mRNA-1
chr4_3 exon 45010670 45010775 45010670 ID=Msa0642820-mRNA-1:exon:10365;Parent=Msa0642820-mRNA-1
chr4_3 five_prime_UTR 45010670 45010775 45010670 ID=Msa0642820-mRNA-1:five_prime_utr;Parent=Msa0642820-mRNA-1
chr4_3 five_prime_UTR 45010240 45010400 45010240 ID=Msa0642820-mRNA-1:five_prime_utr;Parent=Msa0642820-mRNA-1
chr4_3 five_prime_UTR 45010020 45010057 45010020 ID=Msa0642820-mRNA-1:five_prime_utr;Parent=Msa0642820-mRNA-1
chr4_3 CDS 45008919 45010019 45008919 ID=Msa0642820-mRNA-1:cds;Parent=Msa0642820-mRNA-1
chr4_3 CDS 45004708 45005144 45004708 ID=Msa0642820-mRNA-1:cds;Parent=Msa0642820-mRNA-1
chr4_3 CDS 45003889 45003949 45003889 ID=Msa0642820-mRNA-1:cds;Parent=Msa0642820-mRNA-1
chr4_3 CDS 45002774 45003226 45002774 ID=Msa0642820-mRNA-1:cds;Parent=Msa0642820-mRNA-1
chr4_3 three_prime_UTR 45002242 45002773 45002242 ID=Msa0642820-mRNA-1:three_prime_utr;Parent=Msa0642820-mRNA-1
Gene Sequence

>Msa0642820

ATGAGGCCAGATCAATTGCATGTTGCACAACAAATTAGGAGAGACAAATTGAGGATCCAGAATCAAGAGTTTCCTAACAACAACATTGAACAATTGTTATCATTACACCAAACACCACAACCTGCAGGCTTCAATAACTTGGATCTTCTTCATCTCAGAAATGCCAACAACAACATGCTTGATGATCATGATCATGAAGGTCTTTATTCATCTAGTCAAATGATAAATAGTTTTTCATCACCCTCAAATCCTTTACACAGAAACCCTTTGGAATATTGTCATGAACTAGCTGAATCAAGTAACAGTAGGGTAAATTATTATTATGAAAATCATGAAACCAATTCCAACTCTTTCTTGCCTACTGATATTTTCAAGTCTTCAACTTCCATTAGTTCACATAGTACTTCAGAAATGGCTTCTTTAATGAATCATCATGGCATTTGGGGAGGTGGGAATAGTCATAATCCTATTATACCTGTATTTCATGAAAATCAAGCAAATTTGTGGACAAATAGAGGTGTAACTGTTGAAAACAACAACATGAATTCTTTCTTTACTGATTACAATCCTCAAGGTTTATCCTTGTCACTTTCATCAAATTCACAATCCAAACCCTCAACTTCATCTTCAAATTTTGAACAAAGTTCTTTAAATGCTGTGAAACCAACAACACTAATTTCTAGGGACTGTACTACTAGTAGTAGTGGTTTAAGGAATGTTGGTCCACTTGGACCATTTACTGGCTATGCAACAATTTTGAAGAATTCAAGGTATTTAAAACCTTGTCAAGAGTTGTTAGAAGAATGTTGTTGCTTTGTTAAATCCTTTGATAATAATAATAATAATAATAATAATGTTCCAAGATGGGTTTCAAGAGATGTTGTTGGTTGTTCTAGTTCTGGTGGTGTTGATGAAAGTGGAGTTTCTGCAAAAGGTAGTAGTAATTCAGGTGGTTCATCTTCAATGTTGTATGGTTCAAAAGAGAAAGAGAATAGTGGTGGTGATGGAGGAATTGGGAATAACTTTTGTCTTTCTTCTTCTTCCTCTTCTCGACCAGAGTGCCAAAAGAATAAGGCTCAATTACTGTACATGCACGATGAGGTTACAAGAAGGTACAAGCAATACCATCAACAAATGCAAATGGTGGTTTCATCATTTGAGTCAGTAGCTGGTCTAAGTTCAGCTACACCATACATTTCATTGGCTCTAAAGTCACTATCAAGACACTTCAGATGCCTTAAAAATGCTATCACAGATCAACTCAAACTTACATGTCAAGTATTAGGAGAGGACTTTTCAATACTACCAACAACTACAAGTAGCAGTAATAAATTTGACAGTAATAATAATAATAATATGACAAGGCTAAGATGCATGAATCATCACCATAGCTTACAAAAGAACAAATCTGGAGCTGGGAATAGTAATGTAGACTTTGTTGAACCTCAACAACAGCATGTTTGGAGGCCCCAGAGAGGGTTACCTGAAAGATCAGTGGCAATTCTTAAAGCTTGGTTATTTGAGCATTTTCTTCATCCGTACCCTACAGACACTGATAAACACATGTTAGCTACTCAAACAGGTCTATCAAGAAACCAGGTATCAAATTGGTTCATAAACGCTCGAGTCCGTGTATGGAAACCAATGGTTGAAGAAATACACATGCTTGAATCAAAAGGCACAGCAGAAGCTCAGAATCAAAACAATGATAAAAATGAGGCATGCAGAGTCGGAACGCATGAAAAGCACTTTCAGTGTTTGGAAATGGGGTCATCTTCAGGCAATAACAATGTTGAAAAGGTTATTACAAACGAAGAGCAATGGATTAATAATATTCAAGAGAAGAGGTCTAAATTAGAAAGTGATCAGATTACACCAAATATGGATTCAACAGTGATGGGTTTTATGCCGTATCAACGTGGATCCGTATCGCTGACTTTGGGTCTCAGACACGGCGTTGAAAGTGTACAACAGCAGCAACATCAGTTGCAGCAGGAGGTAGACCTTAGACATCAATTTGGAGAGCACATGATCCATGATTTTGTGGGTTAA
Protein sequence

>Msa0642820

MRPDQLHVAQQIRRDKLRIQNQEFPNNNIEQLLSLHQTPQPAGFNNLDLLHLRNANNNMLDDHDHEGLYSSSQMINSFSSPSNPLHRNPLEYCHELAESSNSRVNYYYENHETNSNSFLPTDIFKSSTSISSHSTSEMASLMNHHGIWGGGNSHNPIIPVFHENQANLWTNRGVTVENNNMNSFFTDYNPQGLSLSLSSNSQSKPSTSSSNFEQSSLNAVKPTTLISRDCTTSSSGLRNVGPLGPFTGYATILKNSRYLKPCQELLEECCCFVKSFDNNNNNNNNVPRWVSRDVVGCSSSGGVDESGVSAKGSSNSGGSSSMLYGSKEKENSGGDGGIGNNFCLSSSSSSRPECQKNKAQLLYMHDEVTRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKSLSRHFRCLKNAITDQLKLTCQVLGEDFSILPTTTSSSNKFDSNNNNNMTRLRCMNHHHSLQKNKSGAGNSNVDFVEPQQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLESKGTAEAQNQNNDKNEACRVGTHEKHFQCLEMGSSSGNNNVEKVITNEEQWINNIQEKRSKLESDQITPNMDSTVMGFMPYQRGSVSLTLGLRHGVESVQQQQHQLQQEVDLRHQFGEHMIHDFVG*