AlfalfaGEDB | Msa0546790

M. sativa cultivar zhongmu-4 / Msa0546790

KEGG: -
GO: GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0010016 GO:0010073 GO:0010074 GO:0010076 GO:0010077 GO:0010223 GO:0010228 GO:0010229 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048367 GO:0048507 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080006 GO:0080090 GO:0090567 GO:0098727 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141
PFAM: PF07526.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0546790	XP_039688675.1	90.698	688	33	8	1	679	1	666	0.0	1153

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0546790	sp\|Q9SJJ3\|BLH8_ARATH	33.986	715	302	26	1	679	4	584	1.67e-90	296

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0546790	A0A396I7I3	90.698	688	33	8	1	679	1	666	0.0	1153

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TFs/TRs:

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Gene ID	Type	Classification
Msa0546790	TF	HB-BELL

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0029890	Msa0546790	0.807006	6.240332e-50	-8.615850e-47
Msa0169860	Msa0546790	0.802414	5.674112e-49	-8.615850e-47
Msa0546790	Msa0642820	0.898407	5.467366e-77	-8.615850e-47
Msa0546790	Msa0677430	0.848752	5.016053e-60	-8.615850e-47
Msa0546790	Msa0682620	0.801293	9.639117e-49	-8.615850e-47
Msa0546790	Msa0688770	0.803568	3.275497e-49	-8.615850e-47
Msa0546790	Msa1009000	0.807050	6.108178e-50	-8.615850e-47
Msa0546790	Msa1228210	0.811381	7.204712e-51	-8.615850e-47
Msa0546790	Msa1271280	0.807154	5.805329e-50	-8.615850e-47
Msa0546790	Msa1271300	0.823820	1.127300e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0546790	MtrunA17_Chr4g0028701	90.698	688	33	8	1	679	1	666	0.0	1153
Msa0546790	MtrunA17_Chr2g0327021	40.416	673	263	28	48	645	3	612	2.12e-121	375
Msa0546790	MtrunA17_Chr7g0240371	40.783	434	183	11	238	668	123	485	2.39e-86	280
Msa0546790	MtrunA17_Chr4g0008591	47.866	328	101	10	245	572	189	446	3.83e-80	266
Msa0546790	MtrunA17_Chr7g0267481	37.002	427	197	10	157	583	99	453	3.34e-68	235
Msa0546790	MtrunA17_Chr1g0155681	36.165	412	187	10	255	641	173	533	6.87e-66	228
Msa0546790	MtrunA17_Chr8g0387321	43.175	315	127	6	232	546	170	432	1.07e-65	228
Msa0546790	MtrunA17_Chr4g0025521	39.877	326	146	6	252	575	217	494	3.54e-65	228
Msa0546790	MtrunA17_Chr5g0403251	50.000	228	95	4	343	570	402	610	1.18e-64	228
Msa0546790	MtrunA17_Chr1g0177751	43.537	294	120	5	251	544	160	407	6.00e-64	224

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0546790	AT2G27990.1	33.986	715	302	26	1	679	4	584	1.70e-91	296
Msa0546790	AT5G02030.1	42.708	384	129	8	188	554	110	419	5.39e-79	263
Msa0546790	AT4G36870.2	45.151	299	119	7	252	550	312	565	1.92e-66	233
Msa0546790	AT4G36870.1	45.151	299	119	7	252	550	312	565	1.92e-66	233
Msa0546790	AT4G34610.2	53.081	211	76	3	343	553	197	384	5.14e-66	227
Msa0546790	AT4G34610.4	53.081	211	76	3	343	553	197	384	5.14e-66	227
Msa0546790	AT4G34610.3	53.081	211	76	3	343	553	197	384	5.14e-66	227
Msa0546790	AT4G34610.1	53.081	211	76	3	343	553	197	384	5.14e-66	227
Msa0546790	AT1G19700.1	35.874	446	184	15	147	553	39	421	9.64e-66	226
Msa0546790	AT1G19700.3	35.874	446	184	15	147	553	39	421	9.64e-66	226

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Find 184 sgRNAs with CRISPR-Local

Find 564 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACAAATCTGGAGCT+GGG	0.563662	4_1:-39111084	Msa0546790:CDS
AAAATTCGAAGATGAAGTTG+AGG	0.545913	4_1:+39116834	None:intergenic
AAACTCGAGCGTTAAGAATT+TGG	0.167949	4_1:+39117711	None:intergenic
AAACTTACATGTCAAGTATT+AGG	0.326456	4_1:-39111217	Msa0546790:CDS
AAAGAGAAAGAGAATAGTGG+TGG	0.617298	4_1:-39116478	Msa0546790:CDS
AAAGAGAATAGTGGTGGTGA+TGG	0.422004	4_1:-39116472	Msa0546790:CDS
AAAGGTAGTAGTAATTCAGG+TGG	0.682385	4_1:-39116526	Msa0546790:CDS
AAATATGGATTCAACAGTGA+TGG	0.505789	4_1:-39109189	Msa0546790:CDS
AAATTAGGAGAGACAAATTG+AGG	0.599560	4_1:-39117416	Msa0546790:CDS
AAATTCGAAGATGAAGTTGA+GGG	0.527318	4_1:+39116835	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAACTTCTTAGATTACCT+TGG	+	chr4_1:39108616-39108635	None:intergenic	30.0%
CTCTCTTATAACAACTCAAA+TGG	+	chr4_1:39108797-39108816	None:intergenic	30.0%
AGTTGTTATAAGAGAGATCA+AGG	-	chr4_1:39108801-39108820	Msa0546790:three_prime_UTR	30.0%
GTTGTTATAAGAGAGATCAA+GGG	-	chr4_1:39108802-39108821	Msa0546790:three_prime_UTR	30.0%
TACCGACATATATATAACAC+AGG	-	chr4_1:39108911-39108930	Msa0546790:three_prime_UTR	30.0%
TATAACACAGGTTAATTGGA+AGG	-	chr4_1:39108923-39108942	Msa0546790:three_prime_UTR	30.0%
AAATTAGGAGAGACAAATTG+AGG	-	chr4_1:39109294-39109313	Msa0546790:CDS	30.0%
TTTCTGTGTAAAGGATTTGA+GGG	+	chr4_1:39109506-39109525	None:intergenic	30.0%
GTTCATGACAATATTCCAAA+GGG	+	chr4_1:39109529-39109548	None:intergenic	30.0%
AGTTCATGACAATATTCCAA+AGG	+	chr4_1:39109530-39109549	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	39108512	39118220	39108512	ID=Msa0546790;Name=Msa0546790
chr4_1	mRNA	39108512	39118220	39108512	ID=Msa0546790-mRNA-1;Parent=Msa0546790;Name=Msa0546790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=305\|1\|1\|1\|0.4\|0.5\|6\|525\|679
chr4_1	exon	39108512	39109489	39108512	ID=Msa0546790-mRNA-1:exon:9956;Parent=Msa0546790-mRNA-1
chr4_1	exon	39110146	39110206	39110146	ID=Msa0546790-mRNA-1:exon:9955;Parent=Msa0546790-mRNA-1
chr4_1	exon	39110965	39111401	39110965	ID=Msa0546790-mRNA-1:exon:9954;Parent=Msa0546790-mRNA-1
chr4_1	exon	39116381	39117507	39116381	ID=Msa0546790-mRNA-1:exon:9953;Parent=Msa0546790-mRNA-1
chr4_1	exon	39117681	39117841	39117681	ID=Msa0546790-mRNA-1:exon:9952;Parent=Msa0546790-mRNA-1
chr4_1	exon	39118115	39118220	39118115	ID=Msa0546790-mRNA-1:exon:9951;Parent=Msa0546790-mRNA-1
chr4_1	five_prime_UTR	39118115	39118220	39118115	ID=Msa0546790-mRNA-1:five_prime_utr;Parent=Msa0546790-mRNA-1
chr4_1	five_prime_UTR	39117681	39117841	39117681	ID=Msa0546790-mRNA-1:five_prime_utr;Parent=Msa0546790-mRNA-1
chr4_1	five_prime_UTR	39117470	39117507	39117470	ID=Msa0546790-mRNA-1:five_prime_utr;Parent=Msa0546790-mRNA-1
chr4_1	CDS	39116381	39117469	39116381	ID=Msa0546790-mRNA-1:cds;Parent=Msa0546790-mRNA-1
chr4_1	CDS	39110965	39111401	39110965	ID=Msa0546790-mRNA-1:cds;Parent=Msa0546790-mRNA-1
chr4_1	CDS	39110146	39110206	39110146	ID=Msa0546790-mRNA-1:cds;Parent=Msa0546790-mRNA-1
chr4_1	CDS	39109037	39109489	39109037	ID=Msa0546790-mRNA-1:cds;Parent=Msa0546790-mRNA-1
chr4_1	three_prime_UTR	39108512	39109036	39108512	ID=Msa0546790-mRNA-1:three_prime_utr;Parent=Msa0546790-mRNA-1

Gene Sequence

>Msa0546790

ATGAGGCCAGATCAATTGCATGTTGCACAACAAATTAGGAGAGACAAATTGAGGATCCAGAATCAAGAGTTTCCTAACAACAACATTGAACAATTGTTATCATTACACCAAACACCACAACCTGCAGGCTTCAATAACTTGGATCTTCTTCATCTCAGAAATGCCAACAACAACATGCTTGATGATCATGATCATGAAGGTCTTTATTCATCTAGTCAAATGATAAATAGTTTTTCATCACCCTCAAATCCTTTACACAGAAACCCTTTGGAATATTGTCATGAACTAGCTGAATCAAGTAACAGTAGGGTAAATTATTATTATGAAAATCATGAAACCAATTCCAACTCTTTCTTGCCTACTGATATTTTCAAGTCTTCAACATCCATTAGTTCACATAGTACTTCAGAAATGGCTTCTTTAATGAATCATCATGGCATTTGGGGAGGTGGGAATAGTCATAATCCTATTATACCTGTATTTCATGAAAATCAAGCAAATTTGTGGACAAATAGAGGTGTAACTGTTGAAAACAACAACATGAATTCTTTCTTTACTGATTACAATCCTCAAGGTTTATCCTTGTCACTTTCATCAAATTCACAATCCAAACCCTCAACTTCATCTTCGAATTTTGAACAAAGTTCTTTAAATGCTGTGAAACCAACAACACTAATTTCTAGGGACTGTACTACTAGTAGTAGTGGTTTAAGGAATGTTGGTCCACTTGGACCATTTACTGGCTATGCAACAATTTTGAAGAATTCAAGGTATTTGAAACCTTGTCAAGAGTTGTTAGAAGAATGTTGTTGCTTTGTTAAATCCTTTGATAATAATAATAACAATGTTCCAAGATGGGTTTCTAGAGATGTTGTTGGTTGTTCTAGCTCTGGTGGTGTTGATGAAAGTGCAGTTTCTGCAAAAGGTAGTAGTAATTCAGGTGGTTCATCTTCAATGTTGTATGGTTCAAAAGAGAAAGAGAATAGTGGTGGTGATGGAGGAATTGGGAATAACTTTTGTCTTTCTTCTTCTTCTTCTCGACCAGAGTGCCAAAAGAATAAGGCTCAATTACTGTACATGCACGATGAGGTTACAAGAAGGTACAAGCAATACCATCAACAAATGCAAATGGTGGTTTCATCGTTTGAGTCAGTAGCTGGTCTAAGTTCAGCTACACCATACATTTCATTGGCTCTAAAGTCACTATCAAGACACTTCAGATGCCTTAAAAATGCTATCACAGATCAACTCAAACTTACATGTCAAGTATTAGGAGAGGACTTTTCAATACTACCAACAACCACAAGTAGCAGTAATAAATTTGACAGTAATAATAATAATAATATGACAAGGCTAAGATGCATGAATCATCACCATAGCTTACAAAAGAACAAATCTGGAGCTGGGAATAGTAATGTAGACTTTGTTGAACCTCAACAACAGCATGTTTGGAGGCCCCAGAGAGGGTTACCTGAAAGATCAGTGGCAATTCTTAAAGCTTGGTTATTTGAGCATTTTCTTCATCCGTACCCTACAGACACTGATAAACACATGTTAGCTACTCAAACAGGTCTATCAAGAAACCAGGTATCAAATTGGTTCATAAACGCTCGAGTCCGTGTATGGAAACCAATGGTTGAAGAAATACACATGCTTGAATCAAAAGGCACAGCAGAAGCTCAGAATCAAAACAATGATAAAAATGAGGCATGCAGAGTCGGAACGCATGAAAAGCAGTTTCAGTGTTTGGAAATGGGGTCATCTTCAGGCAATAACAATGTTGAAAAGGTTATTACAAACGAAGAGCAATGGATTAATAATATTCAAGAGAAGAGGTCTAAATTAGAAAGTGATCAGATTACACCAAATATGGATTCAACAGTGATGGGTTTTATGCCGTATCAACGTGGATCCGTATCGCTGACTTTGGGTCTCAGACACGGCGTTGAAAGTGTACAACAGCAGCAACATCAGTTGCAGCAGGAGGTAGACCTTAGACATCAATTTGGAGAGCACATGATCCATGATTTTGTGGGTTAA

Protein sequence

>Msa0546790

MRPDQLHVAQQIRRDKLRIQNQEFPNNNIEQLLSLHQTPQPAGFNNLDLLHLRNANNNMLDDHDHEGLYSSSQMINSFSSPSNPLHRNPLEYCHELAESSNSRVNYYYENHETNSNSFLPTDIFKSSTSISSHSTSEMASLMNHHGIWGGGNSHNPIIPVFHENQANLWTNRGVTVENNNMNSFFTDYNPQGLSLSLSSNSQSKPSTSSSNFEQSSLNAVKPTTLISRDCTTSSSGLRNVGPLGPFTGYATILKNSRYLKPCQELLEECCCFVKSFDNNNNNVPRWVSRDVVGCSSSGGVDESAVSAKGSSNSGGSSSMLYGSKEKENSGGDGGIGNNFCLSSSSSRPECQKNKAQLLYMHDEVTRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKSLSRHFRCLKNAITDQLKLTCQVLGEDFSILPTTTSSSNKFDSNNNNNMTRLRCMNHHHSLQKNKSGAGNSNVDFVEPQQQHVWRPQRGLPERSVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLESKGTAEAQNQNNDKNEACRVGTHEKQFQCLEMGSSSGNNNVEKVITNEEQWINNIQEKRSKLESDQITPNMDSTVMGFMPYQRGSVSLTLGLRHGVESVQQQQHQLQQEVDLRHQFGEHMIHDFVG*